AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0508080

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0508080 MtrunA17_Chr3g0112371 83.424 368 11 1 1 368 53 370 0.0 595
Msa0508080 MtrunA17_Chr3g0112381 88.957 163 18 0 352 514 1 163 2.97e-101 301
Msa0508080 MtrunA17_Chr3g0112381 30.400 125 82 2 339 461 40 161 9.43e-11 60.5
Msa0508080 MtrunA17_Chr7g0239601 62.791 215 70 3 305 513 1 211 1.14e-92 281
Msa0508080 MtrunA17_Chr7g0239591 52.000 150 68 1 87 232 7 156 8.96e-41 144
Msa0508080 MtrunA17_Chr3g0130621 32.301 226 128 5 289 512 39 241 1.13e-32 129
Msa0508080 MtrunA17_Chr3g0130621 33.913 230 126 6 284 511 139 344 2.41e-29 120
Msa0508080 MtrunA17_Chr3g0130621 33.333 210 111 4 280 486 187 370 5.90e-27 113
Msa0508080 MtrunA17_Chr8g0384631 32.877 219 121 4 284 499 121 316 2.13e-30 122
Msa0508080 MtrunA17_Chr8g0384631 33.889 180 115 2 334 512 47 223 3.48e-26 110
Msa0508080 MtrunA17_Chr8g0384631 34.899 149 95 1 364 512 25 171 7.84e-26 108
Msa0508080 MtrunA17_Chr5g0442001 36.364 176 108 3 339 511 311 485 1.36e-27 117
Msa0508080 MtrunA17_Chr5g0442001 29.752 242 131 7 284 510 328 545 9.80e-19 90.1
Msa0508080 MtrunA17_Chr5g0442001 31.330 233 122 8 284 502 435 643 9.64e-18 87.0
Msa0508080 MtrunA17_Chr5g0442001 32.414 145 90 4 370 509 290 431 5.24e-16 81.6
Msa0508080 MtrunA17_Chr5g0442001 31.250 176 96 7 284 458 499 650 4.06e-14 75.5
Msa0508080 MtrunA17_Chr3g0094741 36.364 176 108 3 339 511 321 495 2.64e-27 116
Msa0508080 MtrunA17_Chr3g0094741 33.047 233 119 7 284 502 445 654 6.62e-20 94.0
Msa0508080 MtrunA17_Chr3g0094741 32.394 142 88 4 376 512 306 444 3.52e-16 82.0
Msa0508080 MtrunA17_Chr3g0094741 28.571 175 103 5 284 458 509 661 1.36e-11 67.4
Msa0508080 MtrunA17_Chr7g0239581 66.667 75 24 1 13 86 24 98 3.45e-27 105
Msa0508080 MtrunA17_Chr8g0362061 33.065 248 135 8 275 511 234 461 6.70e-27 115
Msa0508080 MtrunA17_Chr8g0362061 30.857 175 105 3 342 502 449 621 1.13e-14 77.0
Msa0508080 MtrunA17_Chr6g0457381 34.555 191 105 4 339 511 197 385 4.50e-23 101
Msa0508080 MtrunA17_Chr6g0457381 26.340 429 208 15 53 460 44 385 3.04e-21 95.9
Msa0508080 MtrunA17_Chr6g0457381 26.180 233 118 5 334 512 33 265 7.13e-16 79.7
Msa0508080 MtrunA17_Chr3g0130871 30.085 236 128 7 284 506 48 259 5.81e-23 99.8
Msa0508080 MtrunA17_Chr3g0109811 34.091 176 112 3 339 511 306 480 2.47e-22 101
Msa0508080 MtrunA17_Chr3g0109811 28.881 277 145 8 284 512 323 595 5.66e-22 100
Msa0508080 MtrunA17_Chr3g0109811 27.469 324 187 11 200 502 341 637 1.42e-20 95.9
Msa0508080 MtrunA17_Chr3g0109811 29.078 141 86 4 378 510 293 427 1.41e-13 73.6
Msa0508080 MtrunA17_Chr1g0167471 36.364 176 108 3 339 511 276 450 7.06e-22 99.8
Msa0508080 MtrunA17_Chr1g0167471 28.755 233 130 6 284 502 400 610 9.94e-17 83.6
Msa0508080 MtrunA17_Chr1g0167471 32.609 138 87 3 376 509 261 396 9.79e-14 73.9
Msa0508080 MtrunA17_Chr1g0202151 33.526 173 111 3 342 511 284 455 9.70e-22 99.4
Msa0508080 MtrunA17_Chr1g0202151 30.736 231 126 6 284 502 405 613 1.43e-19 92.8
Msa0508080 MtrunA17_Chr1g0202151 28.631 241 135 8 284 509 350 568 3.29e-16 82.0
Msa0508080 MtrunA17_Chr1g0202151 28.000 175 104 3 284 458 468 620 3.76e-12 69.3
Msa0508080 MtrunA17_Chr6g0463421 32.955 176 114 3 339 511 278 452 1.47e-21 99.0
Msa0508080 MtrunA17_Chr6g0463421 33.714 175 100 5 341 502 439 610 2.69e-18 88.6
Msa0508080 MtrunA17_Chr6g0463421 28.395 243 133 9 284 509 347 565 1.23e-17 86.7
Msa0508080 MtrunA17_Chr6g0463421 26.948 308 168 12 235 514 238 516 7.10e-17 84.3
Msa0508080 MtrunA17_Chr6g0463421 26.705 176 105 6 284 458 465 617 5.79e-11 65.5
Msa0508080 MtrunA17_Chr7g0253611 31.092 238 125 9 285 509 154 365 3.40e-21 97.8
Msa0508080 MtrunA17_Chr7g0253611 27.801 241 147 6 280 511 201 423 1.08e-14 77.4
Msa0508080 MtrunA17_Chr7g0253611 30.808 198 124 5 323 511 120 313 5.02e-13 72.0
Msa0508080 MtrunA17_Chr7g0253611 26.842 190 110 5 284 467 264 430 2.50e-12 69.7
Msa0508080 MtrunA17_Chr7g0244411 34.659 176 111 3 339 511 266 440 3.59e-21 97.8
Msa0508080 MtrunA17_Chr7g0244411 33.140 172 102 4 342 502 428 597 6.05e-19 90.9
Msa0508080 MtrunA17_Chr7g0244411 33.571 140 87 3 373 508 248 385 6.31e-15 78.2
Msa0508080 MtrunA17_Chr7g0244411 25.207 242 141 9 284 510 283 499 2.56e-12 69.7
Msa0508080 MtrunA17_Chr5g0415871 28.899 218 114 6 285 491 174 361 2.65e-19 89.7
Msa0508080 MtrunA17_Chr5g0415871 27.468 233 132 7 284 509 65 267 3.88e-15 77.4
Msa0508080 MtrunA17_Chr5g0415871 29.442 197 112 5 285 477 15 188 1.06e-13 72.8
Msa0508080 MtrunA17_Chr3g0123301 29.707 239 141 6 280 511 213 431 1.38e-18 89.0
Msa0508080 MtrunA17_Chr3g0123301 34.078 179 111 4 340 514 150 325 2.86e-18 87.8
Msa0508080 MtrunA17_Chr3g0123301 30.769 169 97 5 342 492 367 533 7.74e-14 73.9
Msa0508080 MtrunA17_Chr3g0142381 27.386 241 138 5 268 491 57 277 1.46e-18 89.0
Msa0508080 MtrunA17_Chr3g0142381 24.923 325 217 10 198 511 93 401 3.41e-12 68.9
Msa0508080 MtrunA17_Chr3g0142381 32.203 118 76 2 363 478 30 145 7.32e-11 64.7
Msa0508080 MtrunA17_Chr3g0140201 32.287 223 113 9 287 489 129 333 4.26e-17 84.0
Msa0508080 MtrunA17_Chr4g0013271 33.721 172 101 4 342 502 230 399 1.05e-16 83.6
Msa0508080 MtrunA17_Chr4g0013271 30.114 176 119 3 339 511 68 242 3.38e-15 79.0
Msa0508080 MtrunA17_Chr2g0317861 28.704 216 146 3 305 512 178 393 1.65e-15 79.0
Msa0508080 MtrunA17_Chr2g0317861 27.753 227 138 5 278 499 282 487 1.51e-12 69.7
Msa0508080 MtrunA17_Chr7g0233601 29.832 238 130 7 284 511 119 329 3.91e-15 77.8
Msa0508080 MtrunA17_Chr7g0233601 31.111 180 92 7 358 512 48 220 8.85e-12 67.0
Msa0508080 MtrunA17_Chr7g0233601 31.651 218 117 7 280 489 165 358 7.45e-11 64.3
Msa0508080 MtrunA17_Chr7g0220131 28.099 242 141 7 286 512 23 246 3.85e-14 74.7
Msa0508080 MtrunA17_Chr7g0220131 29.740 269 150 8 265 512 164 414 2.39e-13 72.4
Msa0508080 MtrunA17_Chr5g0404371 30.688 189 111 5 333 509 259 439 5.89e-13 70.9
Msa0508080 MtrunA17_Chr5g0404371 35.583 163 89 6 358 509 26 183 1.30e-12 69.7
Msa0508080 MtrunA17_Chr1g0146211 29.464 224 117 7 287 489 140 343 7.99e-13 70.1
Msa0508080 MtrunA17_Chr1g0146211 28.505 214 110 9 336 512 107 314 9.92e-13 69.7
Msa0508080 MtrunA17_Chr1g0146221 35.714 84 54 0 387 470 10 93 4.91e-12 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0508080 AT3G55580.1 63.056 517 119 7 8 511 28 485 0.0 618
Msa0508080 AT3G53830.3 54.008 524 161 6 7 514 13 472 0.0 552
Msa0508080 AT3G53830.4 52.045 538 178 6 7 514 13 500 0.0 540
Msa0508080 AT3G53830.1 52.350 468 143 6 7 458 13 416 4.12e-160 462
Msa0508080 AT3G53830.1 31.481 162 79 4 379 510 204 363 4.74e-14 74.7
Msa0508080 AT3G53830.2 50.207 482 160 6 7 458 13 444 1.00e-154 449
Msa0508080 AT3G53830.2 31.481 162 79 4 379 510 232 391 6.02e-14 74.3
Msa0508080 AT5G63860.1 34.513 226 124 5 289 512 39 242 6.55e-34 133
Msa0508080 AT5G63860.1 35.371 229 125 4 284 511 139 345 1.29e-33 132
Msa0508080 AT5G63860.1 33.790 219 120 4 284 499 191 387 8.72e-32 127
Msa0508080 AT5G63860.1 33.628 226 127 5 285 509 88 291 3.38e-30 123
Msa0508080 AT5G63860.1 39.106 179 105 3 335 511 13 189 3.64e-24 105
Msa0508080 AT5G12350.1 34.483 174 112 2 339 511 310 482 3.77e-25 110
Msa0508080 AT5G12350.1 29.741 232 128 5 284 502 432 641 1.26e-18 90.1
Msa0508080 AT5G12350.1 30.882 136 90 2 376 509 295 428 1.59e-15 80.5
Msa0508080 AT5G19420.1 33.908 174 113 2 339 511 314 486 4.00e-25 110
Msa0508080 AT5G19420.1 29.310 232 129 6 284 502 436 645 2.26e-17 86.3
Msa0508080 AT5G19420.1 30.882 136 90 2 376 509 299 432 1.21e-15 80.9
Msa0508080 AT5G19420.1 28.977 176 101 6 284 458 500 652 2.68e-12 70.1
Msa0508080 AT5G19420.3 33.908 174 113 2 339 511 314 486 4.42e-25 110
Msa0508080 AT5G19420.3 29.310 232 129 6 284 502 436 645 3.07e-17 85.9
Msa0508080 AT5G19420.3 30.882 136 90 2 376 509 299 432 1.07e-15 80.9
Msa0508080 AT5G19420.3 28.977 176 101 6 284 458 500 652 4.68e-12 69.3
Msa0508080 AT5G19420.2 33.908 174 113 2 339 511 348 520 4.73e-25 110
Msa0508080 AT5G19420.2 29.310 232 129 6 284 502 470 679 2.61e-17 86.3
Msa0508080 AT5G19420.2 30.882 136 90 2 376 509 333 466 1.33e-15 80.5
Msa0508080 AT5G19420.2 28.977 176 101 6 284 458 534 686 3.13e-12 70.1
Msa0508080 AT4G14368.1 35.795 176 109 3 339 511 272 446 5.79e-23 103
Msa0508080 AT4G14368.1 30.870 230 126 6 284 502 396 603 1.20e-18 90.1
Msa0508080 AT4G14368.1 29.255 188 118 4 334 509 374 558 8.05e-15 78.2
Msa0508080 AT4G14368.1 31.387 137 88 3 376 508 257 391 1.74e-11 67.4
Msa0508080 AT4G14368.4 35.795 176 109 3 339 511 272 446 6.35e-23 103
Msa0508080 AT4G14368.4 30.870 230 126 6 284 502 396 603 1.28e-18 90.1
Msa0508080 AT4G14368.4 29.255 188 118 4 334 509 374 558 9.21e-15 77.8
Msa0508080 AT4G14368.4 31.387 137 88 3 376 508 257 391 2.11e-11 67.4
Msa0508080 AT4G14368.3 35.795 176 109 3 339 511 265 439 6.56e-23 103
Msa0508080 AT4G14368.3 30.870 230 126 6 284 502 389 596 1.19e-18 90.1
Msa0508080 AT4G14368.3 29.255 188 118 4 334 509 367 551 8.95e-15 78.2
Msa0508080 AT4G14368.3 31.387 137 88 3 376 508 250 384 2.13e-11 67.4
Msa0508080 AT4G14368.2 35.795 176 109 3 339 511 270 444 6.63e-23 103
Msa0508080 AT4G14368.2 30.870 230 126 6 284 502 394 601 1.24e-18 90.1
Msa0508080 AT4G14368.2 29.255 188 118 4 334 509 372 556 9.29e-15 77.8
Msa0508080 AT4G14368.2 31.387 137 88 3 376 508 255 389 2.15e-11 67.4
Msa0508080 AT3G23270.1 35.227 176 110 3 339 511 253 427 1.00e-22 102
Msa0508080 AT3G23270.1 30.435 230 127 6 284 502 377 584 2.09e-18 89.4
Msa0508080 AT3G23270.1 27.459 244 139 8 284 512 270 490 2.51e-15 79.7
Msa0508080 AT3G23270.1 28.936 235 133 7 287 509 327 539 2.84e-15 79.7
Msa0508080 AT3G23270.1 32.847 137 86 3 376 508 238 372 1.73e-13 73.9
Msa0508080 AT3G23270.1 27.429 175 103 6 285 458 440 591 4.58e-11 66.2
Msa0508080 AT3G23270.2 35.227 176 110 3 339 511 257 431 1.03e-22 102
Msa0508080 AT3G23270.2 30.435 230 127 6 284 502 381 588 2.19e-18 89.4
Msa0508080 AT3G23270.2 27.459 244 139 8 284 512 274 494 2.70e-15 79.7
Msa0508080 AT3G23270.2 28.936 235 133 7 287 509 331 543 3.08e-15 79.3
Msa0508080 AT3G23270.2 32.847 137 86 3 376 508 242 376 1.80e-13 73.9
Msa0508080 AT3G23270.2 27.429 175 103 6 285 458 444 595 4.32e-11 66.2
Msa0508080 AT5G42140.2 30.992 242 133 7 283 511 233 453 1.70e-22 102
Msa0508080 AT5G42140.2 36.207 174 97 4 341 502 440 611 2.56e-20 95.5
Msa0508080 AT5G42140.2 28.409 176 102 6 284 458 466 618 2.52e-11 67.0
Msa0508080 AT5G42140.1 30.992 242 133 7 283 511 233 453 1.70e-22 102
Msa0508080 AT5G42140.1 36.207 174 97 4 341 502 440 611 2.56e-20 95.5
Msa0508080 AT5G42140.1 28.409 176 102 6 284 458 466 618 2.52e-11 67.0
Msa0508080 AT3G47660.1 37.427 171 101 4 340 506 302 470 4.05e-22 100
Msa0508080 AT3G47660.1 27.468 233 130 6 284 506 425 628 2.34e-14 76.6
Msa0508080 AT3G47660.4 37.427 171 101 4 340 506 338 506 4.13e-22 100
Msa0508080 AT3G47660.4 27.468 233 130 6 284 506 461 664 2.59e-14 76.6
Msa0508080 AT3G47660.6 37.427 171 101 4 340 506 224 392 4.50e-22 100
Msa0508080 AT3G47660.6 27.468 233 130 6 284 506 347 550 2.45e-14 76.6
Msa0508080 AT3G47660.3 37.427 171 101 4 340 506 299 467 4.61e-22 100
Msa0508080 AT3G47660.3 27.468 233 130 6 284 506 422 625 2.68e-14 76.3
Msa0508080 AT3G47660.5 37.427 171 101 4 340 506 299 467 4.61e-22 100
Msa0508080 AT3G47660.5 27.468 233 130 6 284 506 422 625 2.68e-14 76.3
Msa0508080 AT3G47660.7 37.427 171 101 4 340 506 157 325 4.64e-22 100
Msa0508080 AT3G47660.7 27.468 233 130 6 284 506 280 483 2.54e-14 76.3
Msa0508080 AT3G47660.2 37.427 171 101 4 340 506 302 470 4.75e-22 100
Msa0508080 AT3G47660.2 27.468 233 130 6 284 506 425 628 2.83e-14 76.3
Msa0508080 AT5G08710.1 27.726 321 173 13 217 512 84 370 5.24e-22 99.0
Msa0508080 AT5G08710.1 28.409 176 106 2 289 464 54 209 9.96e-13 70.5
Msa0508080 AT1G76950.1 35.028 177 110 4 339 511 283 458 7.66e-22 100
Msa0508080 AT1G76950.1 33.520 179 104 4 341 506 445 621 9.94e-19 90.5
Msa0508080 AT1G76950.1 27.686 242 137 8 284 509 353 572 3.70e-15 79.3
Msa0508080 AT1G76950.1 28.163 245 139 7 284 512 300 523 6.14e-15 78.6
Msa0508080 AT1G76950.1 27.841 176 103 6 284 458 472 624 1.06e-11 68.2
Msa0508080 AT1G76950.1 31.884 138 89 3 376 509 268 404 1.45e-11 67.8
Msa0508080 AT3G02510.1 25.410 366 204 12 207 511 30 387 1.56e-21 97.1
Msa0508080 AT3G02510.1 25.949 316 137 12 289 512 10 320 1.54e-14 75.9
Msa0508080 AT3G02510.3 31.250 192 111 4 339 511 140 329 7.25e-21 94.4
Msa0508080 AT3G02510.3 24.760 416 205 13 66 460 1 329 3.19e-16 80.5
Msa0508080 AT3G02510.3 23.759 282 134 8 289 512 4 262 4.46e-14 73.9
Msa0508080 AT5G16040.1 25.814 430 211 13 52 460 45 387 7.44e-21 95.1
Msa0508080 AT5G16040.1 31.771 192 110 4 339 511 198 387 1.14e-20 94.4
Msa0508080 AT5G16040.1 26.667 255 150 7 265 509 36 263 3.58e-18 87.0
Msa0508080 AT3G03790.1 32.766 235 125 9 285 509 151 362 3.89e-20 95.1
Msa0508080 AT3G03790.1 27.386 241 140 7 284 511 202 420 8.02e-14 75.1
Msa0508080 AT3G03790.3 32.766 235 125 9 285 509 154 365 4.21e-20 94.7
Msa0508080 AT3G03790.3 27.386 241 140 7 284 511 205 423 8.73e-14 74.7
Msa0508080 AT3G03790.3 29.798 198 126 5 323 511 120 313 2.25e-12 70.5
Msa0508080 AT3G03790.2 32.766 235 125 9 285 509 154 365 4.25e-20 94.7
Msa0508080 AT3G03790.2 27.386 241 140 7 284 511 205 423 8.68e-14 74.7
Msa0508080 AT3G03790.2 29.798 198 126 5 323 511 120 313 2.25e-12 70.5
Msa0508080 AT1G27060.1 30.396 227 129 5 284 509 67 265 9.43e-20 91.7
Msa0508080 AT1G27060.1 27.869 305 175 10 198 491 83 353 7.71e-18 85.9
Msa0508080 AT1G27060.1 31.606 193 110 5 285 477 16 186 3.53e-15 77.8
Msa0508080 AT1G69710.2 29.412 238 147 6 279 511 242 463 1.68e-19 92.8
Msa0508080 AT1G69710.2 29.583 240 133 7 284 509 413 630 1.46e-18 90.1
Msa0508080 AT1G69710.2 28.322 286 150 12 275 509 297 578 2.17e-15 80.1
Msa0508080 AT5G08710.2 28.014 282 148 11 217 476 84 332 1.84e-19 90.1
Msa0508080 AT5G08710.2 28.409 176 106 2 289 464 54 209 6.23e-13 70.5
Msa0508080 AT5G08710.2 31.522 184 112 4 339 511 136 316 7.48e-13 70.1
Msa0508080 AT1G69710.1 29.412 238 147 6 279 511 255 476 1.96e-19 92.8
Msa0508080 AT1G69710.1 29.583 240 133 7 284 509 426 643 1.81e-18 89.7
Msa0508080 AT1G69710.1 28.322 286 150 12 275 509 310 591 2.71e-15 79.7
Msa0508080 AT5G16040.2 26.070 257 140 7 265 479 36 284 2.76e-19 89.7
Msa0508080 AT5G16040.2 28.992 238 132 10 286 514 7 216 1.43e-16 81.6
Msa0508080 AT5G16040.2 25.937 347 163 10 52 391 45 304 6.89e-13 70.5
Msa0508080 AT3G02510.2 26.217 267 146 8 256 479 26 284 7.50e-19 87.8
Msa0508080 AT3G15430.6 29.302 215 144 3 305 511 178 392 2.82e-18 88.2
Msa0508080 AT3G15430.6 27.746 173 120 2 332 501 318 488 1.10e-11 67.4
Msa0508080 AT3G15430.4 29.302 215 144 3 305 511 178 392 2.82e-18 88.2
Msa0508080 AT3G15430.4 27.746 173 120 2 332 501 318 488 1.10e-11 67.4
Msa0508080 AT3G15430.2 29.302 215 144 3 305 511 178 392 2.82e-18 88.2
Msa0508080 AT3G15430.2 27.746 173 120 2 332 501 318 488 1.10e-11 67.4
Msa0508080 AT3G15430.3 29.302 215 144 3 305 511 178 392 2.82e-18 88.2
Msa0508080 AT3G15430.3 27.746 173 120 2 332 501 318 488 1.10e-11 67.4
Msa0508080 AT3G15430.5 29.302 215 144 3 305 511 178 392 2.82e-18 88.2
Msa0508080 AT3G15430.5 27.746 173 120 2 332 501 318 488 1.10e-11 67.4
Msa0508080 AT3G15430.1 29.302 215 144 3 305 511 178 392 2.82e-18 88.2
Msa0508080 AT3G15430.1 27.746 173 120 2 332 501 318 488 1.10e-11 67.4
Msa0508080 AT1G65920.2 29.741 232 128 5 284 502 368 577 3.65e-18 88.6
Msa0508080 AT1G65920.2 27.935 247 136 9 284 514 265 485 4.51e-17 85.1
Msa0508080 AT1G65920.2 29.944 177 116 3 339 512 248 419 2.53e-14 76.6
Msa0508080 AT1G65920.1 29.741 232 128 5 284 502 414 623 3.80e-18 88.6
Msa0508080 AT1G65920.1 27.935 247 136 9 284 514 311 531 5.44e-17 85.1
Msa0508080 AT1G65920.1 29.944 177 116 3 339 512 294 465 2.77e-14 76.3
Msa0508080 AT3G26100.5 35.260 173 102 4 348 514 154 322 3.09e-17 85.1
Msa0508080 AT3G26100.5 26.047 430 233 15 102 492 147 530 3.66e-17 84.7
Msa0508080 AT3G26100.5 27.615 239 146 6 280 511 210 428 2.65e-16 82.0
Msa0508080 AT3G26100.6 35.260 173 102 4 348 514 154 322 3.09e-17 85.1
Msa0508080 AT3G26100.6 26.047 430 233 15 102 492 147 530 3.66e-17 84.7
Msa0508080 AT3G26100.6 27.615 239 146 6 280 511 210 428 2.65e-16 82.0
Msa0508080 AT3G26100.2 35.260 173 102 4 348 514 154 322 3.09e-17 85.1
Msa0508080 AT3G26100.2 26.047 430 233 15 102 492 147 530 3.66e-17 84.7
Msa0508080 AT3G26100.2 27.615 239 146 6 280 511 210 428 2.65e-16 82.0
Msa0508080 AT3G26100.3 25.874 429 235 14 102 492 47 430 3.17e-17 84.3
Msa0508080 AT3G26100.3 35.260 173 102 4 348 514 54 222 3.29e-17 84.3
Msa0508080 AT3G26100.3 27.615 239 146 6 280 511 110 328 3.65e-16 81.3
Msa0508080 AT3G26100.4 25.874 429 235 14 102 492 47 430 3.17e-17 84.3
Msa0508080 AT3G26100.4 35.260 173 102 4 348 514 54 222 3.29e-17 84.3
Msa0508080 AT3G26100.4 27.615 239 146 6 280 511 110 328 3.65e-16 81.3
Msa0508080 AT3G26100.1 25.874 429 235 14 102 492 47 430 3.17e-17 84.3
Msa0508080 AT3G26100.1 35.260 173 102 4 348 514 54 222 3.29e-17 84.3
Msa0508080 AT3G26100.1 27.615 239 146 6 280 511 110 328 3.65e-16 81.3
Msa0508080 AT1G19880.1 27.753 227 125 6 284 491 77 283 3.25e-17 85.1
Msa0508080 AT1G19880.1 32.298 161 99 4 360 512 27 185 1.06e-13 73.9
Msa0508080 AT1G19880.1 25.658 304 131 11 281 511 126 407 2.06e-12 70.1
Msa0508080 AT1G19880.1 30.102 196 109 5 341 512 62 253 4.03e-11 65.9
Msa0508080 AT5G48330.2 28.235 255 142 9 284 509 209 451 1.04e-16 83.2
Msa0508080 AT5G48330.2 35.152 165 89 7 358 509 46 205 4.42e-15 77.8
Msa0508080 AT5G48330.1 28.235 255 142 9 284 509 210 452 1.16e-16 82.8
Msa0508080 AT5G48330.1 34.940 166 89 7 358 509 46 206 5.49e-15 77.8
Msa0508080 AT5G60870.1 28.517 263 137 7 268 511 101 331 1.41e-16 82.4
Msa0508080 AT5G60870.1 28.455 246 142 8 285 511 49 279 1.33e-13 73.2
Msa0508080 AT5G60870.1 24.903 257 147 5 265 477 146 400 1.92e-11 66.6
Msa0508080 AT5G60870.2 28.517 263 137 7 268 511 101 331 1.47e-16 82.4
Msa0508080 AT5G60870.2 28.455 246 142 8 285 511 49 279 1.45e-13 73.2
Msa0508080 AT5G60870.4 28.517 263 137 7 268 511 101 331 1.48e-16 82.0
Msa0508080 AT5G60870.4 28.455 246 142 8 285 511 49 279 1.34e-13 73.2
Msa0508080 AT3G02300.2 30.986 213 111 6 280 474 192 386 2.31e-16 82.0
Msa0508080 AT3G02300.2 35.556 135 76 3 386 511 9 141 3.57e-13 72.0
Msa0508080 AT3G02300.2 24.797 246 144 7 286 512 33 256 2.74e-12 69.3
Msa0508080 AT3G02300.1 30.986 213 111 6 280 474 181 375 2.97e-16 81.6
Msa0508080 AT3G02300.1 39.640 111 56 3 410 511 22 130 5.38e-13 71.6
Msa0508080 AT3G02300.1 24.797 246 144 7 286 512 22 245 3.66e-12 68.9
Msa0508080 AT5G11580.1 24.145 468 260 16 49 489 31 430 1.92e-15 79.3
Msa0508080 AT5G11580.1 35.156 128 71 3 376 499 2 121 5.89e-15 77.8
Msa0508080 AT5G11580.1 28.462 260 136 10 284 509 35 278 3.17e-14 75.9
Msa0508080 AT5G11580.2 29.741 232 119 8 279 489 71 279 3.13e-14 75.1
Msa0508080 AT5G11580.2 24.164 269 146 9 278 511 4 249 5.46e-11 65.1
Msa0508080 AT5G60870.3 29.560 159 100 3 339 489 37 191 7.05e-13 69.7
Msa0508080 AT5G60870.3 28.777 139 97 1 339 477 95 231 3.13e-11 64.7

Find 205 sgRNAs with CRISPR-Local

Find 493 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTATGTGGGAAGGGAATTT+TGG 0.150889 3_4:-55809962 Msa0508080:three_prime_UTR
GCATTTGGTTGGGGACTTTA+TGG 0.158518 3_4:-55812819 Msa0508080:CDS
GAAGATCTAGCTAACAAAAT+TGG 0.168886 3_4:+55810133 None:intergenic
ATTCCTTCTGGGAAGGTATT+TGG 0.211398 3_4:-55814156 Msa0508080:CDS
TATTGACGCCGGTACTTGTT+AGG 0.211776 3_4:-55815992 Msa0508080:CDS
TGATTCCTCTTCACTGGTTC+AGG 0.228496 3_4:-55813361 Msa0508080:CDS
TTTAGGACAGGTGTGGGGTT+GGG 0.238807 3_4:-55813460 Msa0508080:CDS
GGTGAAGGGCAGCTTGGTTT+GGG 0.260428 3_4:-55813429 Msa0508080:CDS
CAGGTGTGGGGTTGGGGCTA+TGG 0.283878 3_4:-55813453 Msa0508080:CDS
TGGTTGTGGCAGCTCGGCCT+CGG 0.288720 3_4:-55810286 Msa0508080:intron
AGGTGAAGGGCAGCTTGGTT+TGG 0.290994 3_4:-55813430 Msa0508080:CDS
TGGAAGGAATGTATTCCTTC+TGG 0.295067 3_4:-55814168 Msa0508080:CDS
CTCTATTTGAATGCCCAATA+AGG 0.296580 3_4:+55812055 None:intergenic
TTCACATCCTTCACCATTCA+TGG 0.297016 3_4:+55816079 None:intergenic
TATAACTGGAAGGATGTTTC+TGG 0.301761 3_4:-55815948 Msa0508080:CDS
AGCTGTGCTTGCATTTGGTT+GGG 0.321117 3_4:-55812829 Msa0508080:CDS
TTACATGTGGGGTTATTTAC+CGG 0.325716 3_4:-55816039 Msa0508080:CDS
GCAACGAAGACAATGCATTT+AGG 0.328494 3_4:-55816211 Msa0508080:five_prime_UTR
AACCTGCGTATCTTCCTTAT+TGG 0.328914 3_4:-55812069 Msa0508080:CDS
AGCTGGGGATGGAACAAATA+TGG 0.330745 3_4:-55810487 Msa0508080:CDS
ACAACATGGATAGTAATTTC+TGG 0.335811 3_4:-55809983 Msa0508080:three_prime_UTR
TGGGAATCAGTTTGGGCAGC+TGG 0.338590 3_4:-55811967 Msa0508080:CDS
TGTCAGGTATTGACTTCATA+TGG 0.341213 3_4:-55813617 Msa0508080:CDS
TTAGGACAGGTGTGGGGTTG+GGG 0.355303 3_4:-55813459 Msa0508080:CDS
GCGTTTGGTGGGAATCAGTT+TGG 0.359198 3_4:-55811975 Msa0508080:CDS
AGTCAATACCTGACAATACT+AGG 0.365243 3_4:+55813625 None:intergenic
CTTATTGGGCATTCAAATAG+AGG 0.368963 3_4:-55812054 Msa0508080:CDS
AGAAACTTCTTTAAAATTCG+TGG 0.372307 3_4:-55816352 None:intergenic
TTGCATTGATTCCTCTTCAC+TGG 0.375732 3_4:-55813367 Msa0508080:CDS
ACCTGCGTATCTTCCTTATT+GGG 0.376536 3_4:-55812068 Msa0508080:CDS
GAGCTGTGCTTGCATTTGGT+TGG 0.378959 3_4:-55812830 Msa0508080:CDS
ATGTGAAGTGAAGGAGAAAA+TGG 0.379074 3_4:-55816063 Msa0508080:CDS
GGTTGTGGCAGCTCGGCCTC+GGG 0.379904 3_4:-55810285 Msa0508080:intron
GCCGGTACTTGTTAGGGTTC+CGG 0.380488 3_4:-55815985 Msa0508080:CDS
CGTCGTCTGGTGGTTATAAC+TGG 0.381051 3_4:-55815962 Msa0508080:CDS
TGAAGATACTTTCCTTCTCT+TGG 0.382299 3_4:+55813767 None:intergenic
TTGGTGGCACACTCTTCTTT+TGG 0.382716 3_4:-55810191 Msa0508080:CDS
CATGTAACGTGACCATCTTT+TGG 0.390976 3_4:-55813566 Msa0508080:CDS
GTGTGGGGTTGGGGCTATGG+AGG 0.391729 3_4:-55813450 Msa0508080:CDS
CGTTTGGTGGGAATCAGTTT+GGG 0.392467 3_4:-55811974 Msa0508080:CDS
GGATTTGCCATGGCTATATC+TGG 0.393061 3_4:-55815915 Msa0508080:intron
CGACTTCAGATGGAATGTTT+CGG 0.393363 3_4:+55810251 None:intergenic
GATGTTTCTGGTGGTGGTTG+TGG 0.393818 3_4:-55815936 Msa0508080:CDS
TAGATACCTTGTTTGTAAGT+TGG 0.397787 3_4:-55809881 Msa0508080:three_prime_UTR
ATAGCCTTTATACAGCTTCC+AGG 0.400597 3_4:+55813303 None:intergenic
TTTACAATAGACACTTCATT+TGG 0.412128 3_4:+55814952 None:intergenic
ATTTAGGACAGGTGTGGGGT+TGG 0.412433 3_4:-55813461 Msa0508080:CDS
GTTAGGGTTCCGGCGTCGTC+TGG 0.415167 3_4:-55815975 Msa0508080:CDS
CCATCTGAAGTCGCAATTGA+AGG 0.417788 3_4:-55810241 Msa0508080:CDS
AAGATCTAGCTAACAAAATT+GGG 0.419980 3_4:+55810134 None:intergenic
TGAAGTCAATGTTTAATGCC+TGG 0.423857 3_4:-55809776 Msa0508080:three_prime_UTR
GATTCCTGGAAGCTGTATAA+AGG 0.424422 3_4:-55813307 Msa0508080:CDS
GCCGGAGCTGTGCTTGCATT+TGG 0.424707 3_4:-55812834 Msa0508080:CDS
CAGTTTGGGCAGCTGGGAAC+TGG 0.427878 3_4:-55811960 Msa0508080:CDS
GGATAGTAATTTCTGGTATG+TGG 0.434821 3_4:-55809976 Msa0508080:three_prime_UTR
GTCAATAACGGCGTCCTTTG+CGG 0.437055 3_4:+55816008 None:intergenic
TGCTCCCACAGCTTCATGTT+AGG 0.439024 3_4:+55809841 None:intergenic
AGGGAATTGCTGCCGGTTTG+TGG 0.443270 3_4:-55812034 Msa0508080:CDS
GCGGCTCAAACCTCATCATC+TGG 0.455279 3_4:-55813735 Msa0508080:CDS
TTTGGAAGAGGGAAAGGCTC+TGG 0.459125 3_4:+55814970 None:intergenic
CCTTCAATTGCGACTTCAGA+TGG 0.460907 3_4:+55810241 None:intergenic
TATGGAGGTGAAGGGCAGCT+TGG 0.466985 3_4:-55813435 Msa0508080:CDS
ACCAAATGCAAGCACAGCTC+CGG 0.470121 3_4:+55812833 None:intergenic
GGAAGGAATGTATTCCTTCT+GGG 0.471533 3_4:-55814167 Msa0508080:CDS
TGGTTGGGGACTTTATGGTC+AGG 0.471769 3_4:-55812814 Msa0508080:intron
AAATCAACGAAGAAAATAAA+CGG 0.472550 3_4:-55816325 Msa0508080:five_prime_UTR
ATTGACGCCGGTACTTGTTA+GGG 0.473292 3_4:-55815991 Msa0508080:CDS
TGGAAGGATGTTTCTGGTGG+TGG 0.474487 3_4:-55815942 Msa0508080:CDS
AACATGAAGCTGTGGGAGCA+TGG 0.478277 3_4:-55809838 Msa0508080:three_prime_UTR
GATTCCTCTTCACTGGTTCA+GGG 0.479791 3_4:-55813360 Msa0508080:CDS
TGCCCGACGTCACATAACTT+TGG 0.480052 3_4:+55815090 None:intergenic
ACTACTGGATTGTCCGAGCT+TGG 0.480269 3_4:-55811523 Msa0508080:CDS
GGTTGGGGCTATGGAGGTGA+AGG 0.481635 3_4:-55813444 Msa0508080:CDS
ATGGTGTAAATTACCATGAC+TGG 0.487959 3_4:-55810018 Msa0508080:three_prime_UTR
TATGTGACGTCGGGCAAACA+TGG 0.488871 3_4:-55815083 Msa0508080:CDS
TTCAGATTTAGGACAGGTGT+GGG 0.489157 3_4:-55813466 Msa0508080:CDS
GTGACGAGCCCCACAAGATA+TGG 0.489670 3_4:+55811482 None:intergenic
CTCGGACAATCCAGTAGTCT+TGG 0.496295 3_4:+55811528 None:intergenic
GGCCAAAGTTATGTGACGTC+GGG 0.496472 3_4:-55815092 Msa0508080:CDS
ATAATGTTACATAGATGAAA+AGG 0.497033 3_4:+55809937 None:intergenic
GGAGAAAATGGTTTACATGT+GGG 0.497266 3_4:-55816051 Msa0508080:CDS
ACAAGTACCGGCGTCAATAA+CGG 0.503351 3_4:+55815996 None:intergenic
AGAGGGTGTATCATTATCAC+TGG 0.504388 3_4:+55816244 None:intergenic
GGCACATTGTGTTGCTGCAA+CGG 0.507002 3_4:-55814914 Msa0508080:CDS
TGTCTTGTCACACTAAATCC+AGG 0.508387 3_4:-55813687 Msa0508080:CDS
ATGACATGTCTAAGACTGTA+TGG 0.508541 3_4:+55813510 None:intergenic
GGGAATCAGTTTGGGCAGCT+GGG 0.510736 3_4:-55811966 Msa0508080:CDS
ATAATGGTAAAGTCTTCAGC+TGG 0.512255 3_4:-55810504 Msa0508080:CDS
CGTCATACCCTAGTATTGTC+AGG 0.516459 3_4:-55813633 Msa0508080:CDS
GATGGTGATGTATATGCGTT+TGG 0.518094 3_4:-55811990 Msa0508080:CDS
GCAGACTCTACCAAGACTAC+TGG 0.519977 3_4:-55811538 Msa0508080:intron
GGGAAAATCGTAACCATGAA+TGG 0.522279 3_4:-55816092 Msa0508080:exon
TCAATGCAAGGAATAATATG+AGG 0.522895 3_4:+55813381 None:intergenic
GAAGTCAATGTTTAATGCCT+GGG 0.524043 3_4:-55809775 Msa0508080:three_prime_UTR
TGGGGTTCGACAGATGATCT+AGG 0.524645 3_4:-55815113 Msa0508080:CDS
ATTAGTATATTCATGCAAGT+TGG 0.527615 3_4:-55809803 Msa0508080:three_prime_UTR
AGAGGACACCATACGTACTC+TGG 0.527885 3_4:+55813404 None:intergenic
GCACATTGTGTTGCTGCAAC+GGG 0.531828 3_4:-55814913 Msa0508080:intron
GCTGTGCTTGCATTTGGTTG+GGG 0.533215 3_4:-55812828 Msa0508080:CDS
TACATGTGGGGTTATTTACC+GGG 0.534429 3_4:-55816038 Msa0508080:CDS
TACCGGGAGCTTTACCGCAA+AGG 0.535059 3_4:-55816022 Msa0508080:CDS
ACTTCATTTGGAAGAGGGAA+AGG 0.539459 3_4:+55814964 None:intergenic
GTCCTTTGCGGTAAAGCTCC+CGG 0.541246 3_4:+55816020 None:intergenic
TAATTTCTGGTATGTGGGAA+GGG 0.542560 3_4:-55809970 Msa0508080:three_prime_UTR
CAAATAGAGGGAATTGCTGC+CGG 0.542837 3_4:-55812041 Msa0508080:CDS
ACAGACAGTATGCCACAAAC+CGG 0.543251 3_4:+55812022 None:intergenic
GATAGTAATTTCTGGTATGT+GGG 0.543987 3_4:-55809975 Msa0508080:three_prime_UTR
ATGTGACGTCGGGCAAACAT+GGG 0.544519 3_4:-55815082 Msa0508080:CDS
ACATGAAGCTGTGGGAGCAT+GGG 0.544604 3_4:-55809837 Msa0508080:three_prime_UTR
AGTTCATTCTTGACAGAACA+AGG 0.546472 3_4:-55814084 Msa0508080:intron
GTAAAGTCTTCAGCTGGGGA+TGG 0.551486 3_4:-55810498 Msa0508080:CDS
GTGATGCTTCAACCAAAAGA+TGG 0.554479 3_4:+55813554 None:intergenic
ATAGACACTTCATTTGGAAG+AGG 0.555428 3_4:+55814958 None:intergenic
GCCGGAACCCTAACAAGTAC+CGG 0.556555 3_4:+55815984 None:intergenic
TTTGGGCTCCAGAGTACGTA+TGG 0.558409 3_4:-55813412 Msa0508080:CDS
AGGGTTCCGGCGTCGTCTGG+TGG 0.558761 3_4:-55815972 Msa0508080:CDS
GTAATTTCTGGTATGTGGGA+AGG 0.559765 3_4:-55809971 Msa0508080:three_prime_UTR
ATCGTAACCATGAATGGTGA+AGG 0.560716 3_4:-55816086 Msa0508080:exon
TGTATATGTACATACGGTAG+TGG 0.561189 3_4:-55810074 Msa0508080:three_prime_UTR
TTATTGGGCATTCAAATAGA+GGG 0.562884 3_4:-55812053 Msa0508080:CDS
GCATTAAACATTGACTTCAA+AGG 0.563788 3_4:+55809780 None:intergenic
GTTATATGTATATGTACATA+CGG 0.564485 3_4:-55810080 Msa0508080:three_prime_UTR
TTTCAGATTTAGGACAGGTG+TGG 0.564888 3_4:-55813467 Msa0508080:CDS
TGGTGGTTGTGGATTTGCCA+TGG 0.565419 3_4:-55815925 Msa0508080:CDS
TAGACACTTCATTTGGAAGA+GGG 0.572472 3_4:+55814959 None:intergenic
AGTTTACACATGGGGATGGA+AGG 0.573235 3_4:-55814184 Msa0508080:CDS
GAGAAGAAAGTACCAAGAGA+AGG 0.574982 3_4:-55813779 Msa0508080:CDS
CAGGGAAGCATGAGTTCAGA+AGG 0.575474 3_4:-55813342 Msa0508080:CDS
GTCTTGTCACACTAAATCCA+GGG 0.576790 3_4:-55813686 Msa0508080:CDS
TAATGGTAAAGTCTTCAGCT+GGG 0.578165 3_4:-55810503 Msa0508080:CDS
GGGATGGAACAAATATGGAC+AGG 0.578779 3_4:-55810482 Msa0508080:intron
CGTCACACTGCTATAGTGAC+AGG 0.579855 3_4:-55811465 Msa0508080:intron
GAGAAAATGGTTTACATGTG+GGG 0.580932 3_4:-55816050 Msa0508080:CDS
GGTGATGTATATGCGTTTGG+TGG 0.580941 3_4:-55811987 Msa0508080:CDS
TAGCTAACAAAATTGGGTCG+AGG 0.581089 3_4:+55810140 None:intergenic
ACTTGAAACAGTTCCTCCTG+TGG 0.584795 3_4:+55813803 None:intergenic
TGTAAAAGCTGCTTCTGCGT+GGG 0.587507 3_4:-55814935 Msa0508080:CDS
GAGAAGTTTACACATGGGGA+TGG 0.587963 3_4:-55814188 Msa0508080:CDS
TCACCAAATACCTTCCCAGA+AGG 0.589000 3_4:+55814153 None:intergenic
ACAAGGAAAGCTTATAACAT+GGG 0.591090 3_4:-55815132 Msa0508080:CDS
GTTGGGGCTATGGAGGTGAA+GGG 0.591660 3_4:-55813443 Msa0508080:CDS
GCTTCCCTGAACCAGTGAAG+AGG 0.592977 3_4:+55813356 None:intergenic
GTCTGGTGGTTATAACTGGA+AGG 0.593694 3_4:-55815958 Msa0508080:CDS
AATATCATCACCAGATGATG+AGG 0.594292 3_4:+55813725 None:intergenic
TAAAGATACAATGTCACCCC+AGG 0.594882 3_4:+55809758 None:intergenic
CGACATAGTGCAGTAATCAC+AGG 0.595133 3_4:-55813267 Msa0508080:intron
GTCAATACCTGACAATACTA+GGG 0.595356 3_4:+55813626 None:intergenic
ATGGCATCAAGTCGGTGACT+CGG 0.596431 3_4:+55810168 None:intergenic
TCTCAAGTCTCAAAATCCAC+AGG 0.602133 3_4:-55813819 Msa0508080:CDS
ATAACAAGTGTTGCTGCTGG+TGG 0.603716 3_4:-55813657 Msa0508080:CDS
TTGTAAAAGCTGCTTCTGCG+TGG 0.607380 3_4:-55814936 Msa0508080:CDS
AGAACGTTGCATGTGGTTGG+TGG 0.607933 3_4:-55810207 Msa0508080:CDS
CTAAGAACGTTGCATGTGGT+TGG 0.609940 3_4:-55810210 Msa0508080:CDS
AGGAGAAAATGGTTTACATG+TGG 0.611777 3_4:-55816052 Msa0508080:CDS
AAAATAACAAGTGTTGCTGC+TGG 0.612287 3_4:-55813660 Msa0508080:CDS
AATAAGGAAGATACGCAGGT+TGG 0.613901 3_4:+55812071 None:intergenic
GAGTCACCGACTTGATGCCA+TGG 0.614965 3_4:-55810166 Msa0508080:exon
GGTTGGACTTAATTCATCGT+CGG 0.616761 3_4:+55812088 None:intergenic
AACAAGGAAAGCTTATAACA+TGG 0.617045 3_4:-55815133 Msa0508080:CDS
GGATTTAGTGTGACAAGACA+CGG 0.618965 3_4:+55813690 None:intergenic
ACAGGAGGAACTGTTTCAAG+TGG 0.619205 3_4:-55813801 Msa0508080:CDS
GTGATGTATATGCGTTTGGT+GGG 0.620495 3_4:-55811986 Msa0508080:CDS
CTGGAATGCGTGCGCCACGT+AGG 0.620748 3_4:+55816263 None:intergenic
TGAGTCCTAACATGAAGCTG+TGG 0.622399 3_4:-55809846 Msa0508080:three_prime_UTR
TGGTGAAGGATGTGAAGTGA+AGG 0.622942 3_4:-55816072 Msa0508080:CDS
GGAATGTATTCCTTCTGGGA+AGG 0.625442 3_4:-55814163 Msa0508080:CDS
GCCCAATAAGGAAGATACGC+AGG 0.626018 3_4:+55812067 None:intergenic
AGGCCAAAGTTATGTGACGT+CGG 0.626575 3_4:-55815093 Msa0508080:CDS
GGCTCTAGCTATTAACAACA+TGG 0.632174 3_4:-55809997 Msa0508080:three_prime_UTR
TAACAAGTGTTGCTGCTGGT+GGG 0.636489 3_4:-55813656 Msa0508080:CDS
GCAAGGAATAATATGAGGAG+AGG 0.637549 3_4:+55813386 None:intergenic
TCAGATTTAGGACAGGTGTG+GGG 0.637919 3_4:-55813465 Msa0508080:CDS
ATTGTGGAGAAGTTTACACA+TGG 0.639267 3_4:-55814194 Msa0508080:CDS
ACTGTCTGTACATCTGCTGA+TGG 0.639570 3_4:-55812008 Msa0508080:CDS
GTATTTGGTGAAACTTCGCA+AGG 0.642924 3_4:-55814141 Msa0508080:CDS
AACTGGTTCTGATCAAGCTG+AGG 0.643001 3_4:-55811943 Msa0508080:intron
TTATAACCACCAGACGACGC+CGG 0.643155 3_4:+55815966 None:intergenic
ATTTGGTGAAACTTCGCAAG+GGG 0.643269 3_4:-55814139 Msa0508080:CDS
TGTGGAGAAGTTTACACATG+GGG 0.646292 3_4:-55814192 Msa0508080:CDS
AAATTGGGTCGAGGAAACCA+TGG 0.648307 3_4:+55810149 None:intergenic
TGTGACGTCGGGCAAACATG+GGG 0.650298 3_4:-55815081 Msa0508080:intron
TATTTGGTGAAACTTCGCAA+GGG 0.650738 3_4:-55814140 Msa0508080:CDS
TAAAATACCAGATATAGCCA+TGG 0.651155 3_4:+55815908 None:intergenic
AGTGAAGAGGAATCAATGCA+AGG 0.652033 3_4:+55813369 None:intergenic
AAGTCAATGTTTAATGCCTG+GGG 0.652533 3_4:-55809774 Msa0508080:three_prime_UTR
AACTGGAAGGATGTTTCTGG+TGG 0.653094 3_4:-55815945 Msa0508080:CDS
TTGTGGAGAAGTTTACACAT+GGG 0.656542 3_4:-55814193 Msa0508080:CDS
CAAGGAAAGCTTATAACATG+GGG 0.656689 3_4:-55815131 Msa0508080:CDS
TGTATAAAGGCTATTGCTTG+TGG 0.659292 3_4:-55813294 Msa0508080:CDS
GAGTCCTAACATGAAGCTGT+GGG 0.661847 3_4:-55809845 Msa0508080:three_prime_UTR
GTTGTGGCAGCTCGGCCTCG+GGG 0.662235 3_4:-55810284 Msa0508080:intron
ATAAAGGCTATTGCTTGTGG+TGG 0.663416 3_4:-55813291 Msa0508080:CDS
AATGGTAAAGTCTTCAGCTG+GGG 0.663672 3_4:-55810502 Msa0508080:CDS
TTAATAGCTAGAGCCAGTCA+TGG 0.663977 3_4:+55810005 None:intergenic
AGTATACCAACTTACAAACA+AGG 0.666166 3_4:+55809875 None:intergenic
AGTATCTTCAGCAAAGCAAG+CGG 0.670333 3_4:-55813754 Msa0508080:CDS
CAAGTCTCAAAATCCACAGG+AGG 0.671688 3_4:-55813816 Msa0508080:CDS
AGGAAACCATGGCATCAAGT+CGG 0.672820 3_4:+55810160 None:intergenic
CACGTGGTTCAACTAACACG+TGG 0.675263 3_4:+55816291 None:intergenic
TTCGGTCAATCACGTCCCCG+AGG 0.690703 3_4:+55810269 None:intergenic
AAGGACGCCGTTATTGACGC+CGG 0.695358 3_4:-55816003 Msa0508080:CDS
TCTTGTCACACTAAATCCAG+GGG 0.704093 3_4:-55813685 Msa0508080:CDS
GTAGCTAAGAACGTTGCATG+TGG 0.715490 3_4:-55810214 Msa0508080:CDS
CGCCACGTAGGATTCTCACG+TGG 0.726996 3_4:+55816275 None:intergenic
AACCACGTGAGAATCCTACG+TGG 0.854412 3_4:-55816277 Msa0508080:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACAATAACAATTAAAAAATT+AGG + chr3_4:55810421-55810440 None:intergenic 10.0%
!! AATTTAGTTAATTAAGTAAA+TGG - chr3_4:55810452-55810471 Msa0508080:intron 10.0%
!! AAGAATTAAAAACATATTTA+CGG + chr3_4:55810481-55810500 None:intergenic 10.0%
!! AAAAAGATTAATTAAGTAAA+TGG + chr3_4:55810686-55810705 None:intergenic 10.0%
!!! TTTTATAATTTTGTTTGTAA+AGG - chr3_4:55811080-55811099 Msa0508080:intron 10.0%
!! ATAAATTAAAATTGAATCAA+TGG - chr3_4:55811251-55811270 Msa0508080:intron 10.0%
!! TTAGTTATTTGAATAATATT+TGG - chr3_4:55815395-55815414 Msa0508080:intron 10.0%
!! AATTTCTCACTTAATTAAAA+TGG + chr3_4:55810309-55810328 None:intergenic 15.0%
!!! TTTTTTTTTGTAAGAACTAA+AGG - chr3_4:55810630-55810649 Msa0508080:intron 15.0%
!! AATTTAAATGATTTCAATCA+AGG - chr3_4:55810707-55810726 Msa0508080:intron 15.0%
!! TTAAGGAATCATTAAATTAT+AGG - chr3_4:55811524-55811543 Msa0508080:CDS 15.0%
!! AAATTATAGGAATAATTGTA+TGG - chr3_4:55811537-55811556 Msa0508080:CDS 15.0%
!!! TTTTGAGAAAAAAAAAATCA+AGG + chr3_4:55811589-55811608 None:intergenic 15.0%
!! TTATAAAACATCAAAAGAAA+AGG - chr3_4:55811761-55811780 Msa0508080:intron 15.0%
!! TTCAAGAAATTATATTTATC+TGG - chr3_4:55811800-55811819 Msa0508080:intron 15.0%
!! TCAAGAAATTATATTTATCT+GGG - chr3_4:55811801-55811820 Msa0508080:intron 15.0%
!!! AGAATATGCTTTTTAAAATT+AGG + chr3_4:55813525-55813544 None:intergenic 15.0%
!! AAACATTACAAAACATATAT+AGG - chr3_4:55815125-55815144 Msa0508080:CDS 15.0%
!!! TTTTACCTTCTATTTATAAT+TGG + chr3_4:55815166-55815185 None:intergenic 15.0%
!! TTATTTGAATAATATTTGGA+GGG - chr3_4:55815399-55815418 Msa0508080:intron 15.0%
!! AAAAAGGAGATAAATAAAAA+TGG + chr3_4:55815638-55815657 None:intergenic 15.0%
!! GAAATAAAGGAATATATAAT+TGG - chr3_4:55815735-55815754 Msa0508080:intron 15.0%
!! AAATCAACGAAGAAAATAAA+CGG - chr3_4:55809753-55809772 Msa0508080:three_prime_UTR 20.0%
!!! TTAATTTCAAAACAGTTTTG+TGG + chr3_4:55809941-55809960 None:intergenic 20.0%
!! CTCAACAAATTAATTGAAAA+TGG + chr3_4:55810196-55810215 None:intergenic 20.0%
!! AAAAAATTGATGTGATTGAA+AGG - chr3_4:55811221-55811240 Msa0508080:intron 20.0%
!! TACGATATTCATGAAATTAA+CGG + chr3_4:55811314-55811333 None:intergenic 20.0%
!! AAACATCAAAAGAAAATGAA+TGG + chr3_4:55811486-55811505 None:intergenic 20.0%
!!! TCATTTTCTTTTGATGTTTT+AGG - chr3_4:55811487-55811506 Msa0508080:CDS 20.0%
!! AATAATAAATGCAATTTGTG+TGG + chr3_4:55811640-55811659 None:intergenic 20.0%
!!! TTCTAAAACATCAAAAGTTT+TGG - chr3_4:55811724-55811743 Msa0508080:intron 20.0%
!!! TTTCTGAATTTTTCAGATTT+AGG - chr3_4:55812601-55812620 Msa0508080:intron 20.0%
!! AATTGTATGATTTAATGAGA+GGG - chr3_4:55813010-55813029 Msa0508080:intron 20.0%
!! AATAGTTGAGAAACAATTAT+AGG + chr3_4:55813161-55813180 None:intergenic 20.0%
!!! AATTGTTTCTCAACTATTTT+CGG - chr3_4:55813163-55813182 Msa0508080:intron 20.0%
!!! TTTACCTTTTTAGAAAGTTT+TGG - chr3_4:55813439-55813458 Msa0508080:CDS 20.0%
!! CAGTAAAATTAAAAAGATGT+TGG + chr3_4:55813674-55813693 None:intergenic 20.0%
!! AATGGTTAAAAATTGAAAAC+AGG + chr3_4:55813775-55813794 None:intergenic 20.0%
!!! TCAATTTTTAACCATTCTAT+AGG - chr3_4:55813779-55813798 Msa0508080:CDS 20.0%
!! AATAAAATTCCCAAACAAAT+GGG + chr3_4:55814248-55814267 None:intergenic 20.0%
!! AAATAAAATTCCCAAACAAA+TGG + chr3_4:55814249-55814268 None:intergenic 20.0%
!!! CATTTTTTAAGCTTAACAAA+TGG - chr3_4:55814395-55814414 Msa0508080:intron 20.0%
!! GTTATTTGAATAATATTTGG+AGG - chr3_4:55815398-55815417 Msa0508080:intron 20.0%
!! GTGATAATCTATTAATGATA+GGG + chr3_4:55815524-55815543 None:intergenic 20.0%
!! AGTGATAATCTATTAATGAT+AGG + chr3_4:55815525-55815544 None:intergenic 20.0%
!!! TTTTTGTTTCTTCAAGATAA+TGG - chr3_4:55815558-55815577 Msa0508080:intron 20.0%
!! AAAGGAATATATAATTGGTA+TGG - chr3_4:55815740-55815759 Msa0508080:intron 20.0%
!!! CTTCATTTTATTTGGTAAAA+CGG - chr3_4:55815964-55815983 Msa0508080:CDS 20.0%
!! GTTATATGTATATGTACATA+CGG - chr3_4:55815998-55816017 Msa0508080:CDS 20.0%
!! ATAATGTTACATAGATGAAA+AGG + chr3_4:55816144-55816163 None:intergenic 20.0%
!!! TGTTTTGAAATTAACTGCAT+TGG - chr3_4:55809947-55809966 Msa0508080:three_prime_UTR 25.0%
!!! GTTTTGAAATTAACTGCATT+GGG - chr3_4:55809948-55809967 Msa0508080:three_prime_UTR 25.0%
! TATGTGTTTGTTTGATTGAA+TGG - chr3_4:55810364-55810383 Msa0508080:intron 25.0%
!! GTTCTTGTAAAATTTTCCAT+CGG - chr3_4:55810547-55810566 Msa0508080:intron 25.0%
!!! ATTTTAACCGACAATTTAGT+CGG + chr3_4:55810585-55810604 None:intergenic 25.0%
!! ATTCTGGTTATGAATATCTA+CGG - chr3_4:55810657-55810676 Msa0508080:intron 25.0%
! TTTACAATAGACACTTCATT+TGG + chr3_4:55811129-55811148 None:intergenic 25.0%
!!! ATCACATCAATTTTTTTCTC+AGG + chr3_4:55811217-55811236 None:intergenic 25.0%
! ATCAAAAGAAAATGAATGGA+GGG + chr3_4:55811482-55811501 None:intergenic 25.0%
! AAAAAAAAAATCAAGGAGGA+AGG + chr3_4:55811582-55811601 None:intergenic 25.0%
! TGAGAAAAAAAAAATCAAGG+AGG + chr3_4:55811586-55811605 None:intergenic 25.0%
!! GAAAAACACACTTTGAAAAT+TGG + chr3_4:55811670-55811689 None:intergenic 25.0%
!!! TTTTTCAACAAGGGTAAAAT+TGG - chr3_4:55811684-55811703 Msa0508080:intron 25.0%
! AAACATCAAAAGAAAAGGAA+TGG - chr3_4:55811766-55811785 Msa0508080:intron 25.0%
!! TCTTTTCTTCTTTCTTTTTG+GGG + chr3_4:55812151-55812170 None:intergenic 25.0%
!! CTCTTTTCTTCTTTCTTTTT+GGG + chr3_4:55812152-55812171 None:intergenic 25.0%
!! ACTCTTTTCTTCTTTCTTTT+TGG + chr3_4:55812153-55812172 None:intergenic 25.0%
!! TTACATGAAATTTTAAGCTC+GGG + chr3_4:55812499-55812518 None:intergenic 25.0%
!! GTTACATGAAATTTTAAGCT+CGG + chr3_4:55812500-55812519 None:intergenic 25.0%
!! GTCACAAATAAACATTTTTC+AGG - chr3_4:55812856-55812875 Msa0508080:intron 25.0%
! GAATTGTATGATTTAATGAG+AGG - chr3_4:55813009-55813028 Msa0508080:intron 25.0%
! GCGATCAAAAAGATAAATAT+TGG + chr3_4:55813892-55813911 None:intergenic 25.0%
!!! TATCTTGTTTTTGATAAGTG+CGG - chr3_4:55813956-55813975 Msa0508080:intron 25.0%
!! AATTGTTAACTTGAATTACG+AGG - chr3_4:55814518-55814537 Msa0508080:intron 25.0%
! AATGTAAAAACCATATCTTG+TGG - chr3_4:55814586-55814605 Msa0508080:intron 25.0%
! ATGTAAAAACCATATCTTGT+GGG - chr3_4:55814587-55814606 Msa0508080:intron 25.0%
! TCCTAAAAATGAAATCTAGA+AGG - chr3_4:55814760-55814779 Msa0508080:intron 25.0%
!!! ACCTTCTAGATTTCATTTTT+AGG + chr3_4:55814764-55814783 None:intergenic 25.0%
! CTTGATCGACAAAATATAAT+GGG + chr3_4:55814792-55814811 None:intergenic 25.0%
! ACTTGATCGACAAAATATAA+TGG + chr3_4:55814793-55814812 None:intergenic 25.0%
! GATAATGTAACTAAACTTGA+GGG + chr3_4:55814886-55814905 None:intergenic 25.0%
! AGATAATGTAACTAAACTTG+AGG + chr3_4:55814887-55814906 None:intergenic 25.0%
!! ATTATATTTTGTCGCTCTAT+TGG + chr3_4:55814914-55814933 None:intergenic 25.0%
! ATTTCCTTTGTAAAAGATGA+AGG - chr3_4:55814947-55814966 Msa0508080:CDS 25.0%
! CAAAACATATATAGGAAGTA+AGG - chr3_4:55815133-55815152 Msa0508080:CDS 25.0%
! CTTGAAGAAACAAAAACAAA+AGG + chr3_4:55815554-55815573 None:intergenic 25.0%
!!! GTTCTAGTTTAGTGAAATAA+AGG - chr3_4:55815722-55815741 Msa0508080:intron 25.0%
! AAGATCTAGCTAACAAAATT+GGG + chr3_4:55815947-55815966 None:intergenic 25.0%
!! AGCTAGATCTTCATTTTATT+TGG - chr3_4:55815956-55815975 Msa0508080:CDS 25.0%
!! TAAGCTTTTGTATTCTTTCA+TGG - chr3_4:55816041-55816060 Msa0508080:CDS 25.0%
! ATTAGTATATTCATGCAAGT+TGG - chr3_4:55816275-55816294 Msa0508080:five_prime_UTR 25.0%
!! ATTTCAAAACAGTTTTGTGG+CGG + chr3_4:55809938-55809957 None:intergenic 30.0%
TAAAATACCAGATATAGCCA+TGG + chr3_4:55810173-55810192 None:intergenic 30.0%
!!! GTTTGATTGAATGGTTTTGT+TGG - chr3_4:55810373-55810392 Msa0508080:intron 30.0%
! TTTTAACCGACAATTTAGTC+GGG + chr3_4:55810584-55810603 None:intergenic 30.0%
! AATTGTCGGTTAAAATGCTA+TGG - chr3_4:55810589-55810608 Msa0508080:intron 30.0%
! ATTGTCGGTTAAAATGCTAT+GGG - chr3_4:55810590-55810609 Msa0508080:intron 30.0%
AAGAACTAAAGGTGAAATTC+TGG - chr3_4:55810641-55810660 Msa0508080:intron 30.0%
AACAATCTTTGACCAAACAT+CGG - chr3_4:55810764-55810783 Msa0508080:intron 30.0%
TTCCTCAAAAAAAACGTTCA+TGG + chr3_4:55810810-55810829 None:intergenic 30.0%
!!! CGTTTTTTTTGAGGAAGTTA+TGG - chr3_4:55810814-55810833 Msa0508080:intron 30.0%
TTTCTTCCTTAATCAGAACA+AGG - chr3_4:55810929-55810948 Msa0508080:intron 30.0%
AACAAGGAAAGCTTATAACA+TGG - chr3_4:55810945-55810964 Msa0508080:intron 30.0%
ACAAGGAAAGCTTATAACAT+GGG - chr3_4:55810946-55810965 Msa0508080:intron 30.0%
!! GCTGATGATGAAAGTATTAT+TGG - chr3_4:55811334-55811353 Msa0508080:intron 30.0%
TTTGAATCAAAGATGAAGAG+AGG + chr3_4:55811433-55811452 None:intergenic 30.0%
CATCAAAAGAAAATGAATGG+AGG + chr3_4:55811483-55811502 None:intergenic 30.0%
AGGTGATTGCACAAATATTA+AGG - chr3_4:55811507-55811526 Msa0508080:CDS 30.0%
GTGGTGAGTATCAATAATTA+AGG + chr3_4:55811621-55811640 None:intergenic 30.0%
!! TCAAAGTGTGTTTTTCAACA+AGG - chr3_4:55811674-55811693 Msa0508080:intron 30.0%
!! CAAAGTGTGTTTTTCAACAA+GGG - chr3_4:55811675-55811694 Msa0508080:intron 30.0%
ATCAAAAGAAAAGGAATGGA+GGG - chr3_4:55811770-55811789 Msa0508080:intron 30.0%
TAAGTGATTGTATGTCTTAC+TGG - chr3_4:55811824-55811843 Msa0508080:intron 30.0%
! TTTCCTTTTGCATCTTTTTC+AGG + chr3_4:55811970-55811989 None:intergenic 30.0%
! TATGTCTAACCTCTTTTCAA+TGG - chr3_4:55812017-55812036 Msa0508080:CDS 30.0%
!! GAATTTTTCAGATTTAGGAC+AGG - chr3_4:55812606-55812625 Msa0508080:intron 30.0%
TCAATGCAAGGAATAATATG+AGG + chr3_4:55812700-55812719 None:intergenic 30.0%
CATATGGATATTCTCATTGT+TGG + chr3_4:55812908-55812927 None:intergenic 30.0%
AGTCAGGTAAATTAAGCATA+TGG + chr3_4:55812924-55812943 None:intergenic 30.0%
ATATGCTTAATTTACCTGAC+TGG - chr3_4:55812923-55812942 Msa0508080:intron 30.0%
!! TTGATATTTTCACTGACTGA+AGG + chr3_4:55813052-55813071 None:intergenic 30.0%
TTTATGGTCAGGTGATTTAA+GGG - chr3_4:55813275-55813294 Msa0508080:CDS 30.0%
TTATGTAGCCACATAAGATA+GGG + chr3_4:55813383-55813402 None:intergenic 30.0%
! ACAGCCAAAACTTTCTAAAA+AGG + chr3_4:55813446-55813465 None:intergenic 30.0%
TATTGTATCAAGAAAACGCA+TGG + chr3_4:55813597-55813616 None:intergenic 30.0%
TTTACTGTCTAATACTTCCT+TGG - chr3_4:55813687-55813706 Msa0508080:CDS 30.0%
TACATGTTGATCCTATAGAA+TGG + chr3_4:55813793-55813812 None:intergenic 30.0%
ATTCTATAGGATCAACATGT+AGG - chr3_4:55813792-55813811 Msa0508080:CDS 30.0%
! TTCAACATCTACATTGCTTT+TGG + chr3_4:55813836-55813855 None:intergenic 30.0%
!!! ATCTTGTTTTTGATAAGTGC+GGG - chr3_4:55813957-55813976 Msa0508080:intron 30.0%
TTATTGGGCATTCAAATAGA+GGG - chr3_4:55814025-55814044 Msa0508080:intron 30.0%
!! ATTTTAGCGACAATAAGTGT+GGG + chr3_4:55814194-55814213 None:intergenic 30.0%
!! AATTTTAGCGACAATAAGTG+TGG + chr3_4:55814195-55814214 None:intergenic 30.0%
! AAATTTGAAACGAACCATAG+TGG - chr3_4:55814210-55814229 Msa0508080:intron 30.0%
CAGCAATAAAGATATAGTCA+TGG + chr3_4:55814444-55814463 None:intergenic 30.0%
AAAACTGAGTATGTAGCTTA+AGG + chr3_4:55814470-55814489 None:intergenic 30.0%
!!! CTACATACTCAGTTTTATTG+AGG - chr3_4:55814474-55814493 Msa0508080:intron 30.0%
! ATTGAGGTATTATGTGATAC+TGG - chr3_4:55814490-55814509 Msa0508080:intron 30.0%
TGTAAAAACCATATCTTGTG+GGG - chr3_4:55814588-55814607 Msa0508080:intron 30.0%
AAAATGACATACACAGGTTA+TGG + chr3_4:55814643-55814662 None:intergenic 30.0%
!! ATAACCTGTGTATGTCATTT+TGG - chr3_4:55814642-55814661 Msa0508080:intron 30.0%
!!! TGTCATTTTGGTATCTTCAT+TGG - chr3_4:55814654-55814673 Msa0508080:intron 30.0%
TCGGAACAAACAAAAACAAA+AGG + chr3_4:55814832-55814851 None:intergenic 30.0%
!! TGTTTTTGTTTGTTCCGAAA+TGG - chr3_4:55814834-55814853 Msa0508080:intron 30.0%
! TCTTTTGATGGAAACCATTT+CGG + chr3_4:55814851-55814870 None:intergenic 30.0%
!!! ATGCTAGTGCTATTTTGAAA+TGG - chr3_4:55814970-55814989 Msa0508080:CDS 30.0%
AACATATATAGGAAGTAAGG+AGG - chr3_4:55815136-55815155 Msa0508080:CDS 30.0%
ACATATATAGGAAGTAAGGA+GGG - chr3_4:55815137-55815156 Msa0508080:intron 30.0%
GGCAACCAATTATAAATAGA+AGG - chr3_4:55815158-55815177 Msa0508080:intron 30.0%
AAGGTAAAAGAGAAGATAGA+GGG - chr3_4:55815177-55815196 Msa0508080:intron 30.0%
! GAGTCTTATCCTAGTTATAT+TGG - chr3_4:55815266-55815285 Msa0508080:intron 30.0%
AAATTCGACTGGTATTAAGA+GGG + chr3_4:55815344-55815363 None:intergenic 30.0%
TAAATTCGACTGGTATTAAG+AGG + chr3_4:55815345-55815364 None:intergenic 30.0%
! TGACTTTTGATAAATTCGAC+TGG + chr3_4:55815355-55815374 None:intergenic 30.0%
TTGAATAATATTTGGAGGGT+TGG - chr3_4:55815403-55815422 Msa0508080:intron 30.0%
TCGTATCTTCTTGATTACAT+TGG - chr3_4:55815471-55815490 Msa0508080:intron 30.0%
ACATTATTGAAAGTTCTACC+TGG - chr3_4:55815678-55815697 Msa0508080:intron 30.0%
ATCACTTAAATACATATGCC+AGG + chr3_4:55815699-55815718 None:intergenic 30.0%
GAAGATCTAGCTAACAAAAT+TGG + chr3_4:55815948-55815967 None:intergenic 30.0%
ACAACATGGATAGTAATTTC+TGG - chr3_4:55816095-55816114 Msa0508080:exon 30.0%
!! GATAGTAATTTCTGGTATGT+GGG - chr3_4:55816103-55816122 Msa0508080:five_prime_UTR 30.0%
! TAGATACCTTGTTTGTAAGT+TGG - chr3_4:55816197-55816216 Msa0508080:five_prime_UTR 30.0%
AGTATACCAACTTACAAACA+AGG + chr3_4:55816206-55816225 None:intergenic 30.0%
!! GCATTAAACATTGACTTCAA+AGG + chr3_4:55816301-55816320 None:intergenic 30.0%
TCGTTGCTTCGTTAAAAAGA+GGG + chr3_4:55809854-55809873 None:intergenic 35.0%
TTCGTTGCTTCGTTAAAAAG+AGG + chr3_4:55809855-55809874 None:intergenic 35.0%
!! TGCATTGGGTTTTGTGTTTT+TGG - chr3_4:55809962-55809981 Msa0508080:three_prime_UTR 35.0%
!!! ATTGGGTTTTGTGTTTTTGG+TGG - chr3_4:55809965-55809984 Msa0508080:three_prime_UTR 35.0%
!!! TTGGGTTTTGTGTTTTTGGT+GGG - chr3_4:55809966-55809985 Msa0508080:three_prime_UTR 35.0%
ATGTGAAGTGAAGGAGAAAA+TGG - chr3_4:55810015-55810034 Msa0508080:three_prime_UTR 35.0%
AGGAGAAAATGGTTTACATG+TGG - chr3_4:55810026-55810045 Msa0508080:three_prime_UTR 35.0%
GGAGAAAATGGTTTACATGT+GGG - chr3_4:55810027-55810046 Msa0508080:three_prime_UTR 35.0%
GAGAAAATGGTTTACATGTG+GGG - chr3_4:55810028-55810047 Msa0508080:three_prime_UTR 35.0%
TTACATGTGGGGTTATTTAC+CGG - chr3_4:55810039-55810058 Msa0508080:three_prime_UTR 35.0%
TATAACTGGAAGGATGTTTC+TGG - chr3_4:55810130-55810149 Msa0508080:three_prime_UTR 35.0%
TTTAACCGACAATTTAGTCG+GGG + chr3_4:55810583-55810602 None:intergenic 35.0%
CAATCAAGGTCGAATTGATT+TGG - chr3_4:55810721-55810740 Msa0508080:intron 35.0%
ACAATCTTTGACCAAACATC+GGG - chr3_4:55810765-55810784 Msa0508080:intron 35.0%
TCAAAAAAAACGTTCATGGC+TGG + chr3_4:55810806-55810825 None:intergenic 35.0%
!!! AGCCATGAACGTTTTTTTTG+AGG - chr3_4:55810805-55810824 Msa0508080:intron 35.0%
TGCTTAAAGAGATAGAGTGA+CGG + chr3_4:55810854-55810873 None:intergenic 35.0%
AGCTTTCCTTGTTCTGATTA+AGG + chr3_4:55810938-55810957 None:intergenic 35.0%
CAAGGAAAGCTTATAACATG+GGG - chr3_4:55810947-55810966 Msa0508080:intron 35.0%
TAGACACTTCATTTGGAAGA+GGG + chr3_4:55811122-55811141 None:intergenic 35.0%
ATAGACACTTCATTTGGAAG+AGG + chr3_4:55811123-55811142 None:intergenic 35.0%
TTGATGTGATTGAAAGGACA+AGG - chr3_4:55811227-55811246 Msa0508080:intron 35.0%
TGATGTGATTGAAAGGACAA+GGG - chr3_4:55811228-55811247 Msa0508080:intron 35.0%
AATTAACGGTCAGTAAGCAT+TGG + chr3_4:55811300-55811319 None:intergenic 35.0%
AAAAATCAAGGAGGAAGGAA+GGG + chr3_4:55811577-55811596 None:intergenic 35.0%
AAAAAATCAAGGAGGAAGGA+AGG + chr3_4:55811578-55811597 None:intergenic 35.0%
CATCAAAAGAAAAGGAATGG+AGG - chr3_4:55811769-55811788 Msa0508080:intron 35.0%
ATTGTGGAGAAGTTTACACA+TGG - chr3_4:55811884-55811903 Msa0508080:intron 35.0%
TTGTGGAGAAGTTTACACAT+GGG - chr3_4:55811885-55811904 Msa0508080:intron 35.0%
! TATTTGGTGAAACTTCGCAA+GGG - chr3_4:55811938-55811957 Msa0508080:intron 35.0%
AGTCCTGAAAAAGATGCAAA+AGG - chr3_4:55811964-55811983 Msa0508080:CDS 35.0%
AGTTCATTCTTGACAGAACA+AGG - chr3_4:55811994-55812013 Msa0508080:CDS 35.0%
GACAAATGTCCATTGAAAAG+AGG + chr3_4:55812029-55812048 None:intergenic 35.0%
CACTTTATGATGAGCAAAGA+AGG - chr3_4:55812177-55812196 Msa0508080:intron 35.0%
TGAAGATACTTTCCTTCTCT+TGG + chr3_4:55812314-55812333 None:intergenic 35.0%
AATATCATCACCAGATGATG+AGG + chr3_4:55812356-55812375 None:intergenic 35.0%
!!! ACACTTGTTATTTTTACCCC+TGG + chr3_4:55812412-55812431 None:intergenic 35.0%
! AAAATAACAAGTGTTGCTGC+TGG - chr3_4:55812418-55812437 Msa0508080:intron 35.0%
GTCAATACCTGACAATACTA+GGG + chr3_4:55812455-55812474 None:intergenic 35.0%
AGTCAATACCTGACAATACT+AGG + chr3_4:55812456-55812475 None:intergenic 35.0%
!! TGTCAGGTATTGACTTCATA+TGG - chr3_4:55812461-55812480 Msa0508080:intron 35.0%
! ATGACATGTCTAAGACTGTA+TGG + chr3_4:55812571-55812590 None:intergenic 35.0%
! GTTCAGAAGGACACAATTTT+AGG - chr3_4:55812749-55812768 Msa0508080:intron 35.0%
TGTATAAAGGCTATTGCTTG+TGG - chr3_4:55812784-55812803 Msa0508080:intron 35.0%
! AAGCCTGCATTAGTTTCTTT+GGG - chr3_4:55812879-55812898 Msa0508080:intron 35.0%
TAATTTACCTGACTGGTATC+AGG - chr3_4:55812930-55812949 Msa0508080:intron 35.0%
CTTTATGGTCAGGTGATTTA+AGG - chr3_4:55813274-55813293 Msa0508080:CDS 35.0%
AATAATTTACACTGCCAGCT+AGG + chr3_4:55813341-55813360 None:intergenic 35.0%
! GCATTTTTCCCTATCTTATG+TGG - chr3_4:55813372-55813391 Msa0508080:CDS 35.0%
GTTATGTAGCCACATAAGAT+AGG + chr3_4:55813384-55813403 None:intergenic 35.0%
CTTATGTGGCTACATAACTA+AGG - chr3_4:55813386-55813405 Msa0508080:CDS 35.0%
TTAACGCCAATAGAAAGCAA+CGG + chr3_4:55813628-55813647 None:intergenic 35.0%
CAATGTAGATGTTGAAGATG+AGG - chr3_4:55813840-55813859 Msa0508080:intron 35.0%
CTCTATTTGAATGCCCAATA+AGG + chr3_4:55814026-55814045 None:intergenic 35.0%
CTTATTGGGCATTCAAATAG+AGG - chr3_4:55814024-55814043 Msa0508080:intron 35.0%
! TTTTAGCGACAATAAGTGTG+GGG + chr3_4:55814193-55814212 None:intergenic 35.0%
TGATTATGAGCCCATTTGTT+TGG - chr3_4:55814235-55814254 Msa0508080:intron 35.0%
GATTATGAGCCCATTTGTTT+GGG - chr3_4:55814236-55814255 Msa0508080:intron 35.0%
CTCAGTTTGTAAGAATTCGT+AGG - chr3_4:55814291-55814310 Msa0508080:intron 35.0%
GTAAGAATTCGTAGGAGATT+TGG - chr3_4:55814299-55814318 Msa0508080:intron 35.0%
AAGATATAGTCATGGTACAC+TGG + chr3_4:55814436-55814455 None:intergenic 35.0%
! ACATTCACATTTTCCAAGCT+CGG + chr3_4:55814571-55814590 None:intergenic 35.0%
GATACCAAAATGACATACAC+AGG + chr3_4:55814649-55814668 None:intergenic 35.0%
! AAAAACCCTCTCTCTTTTGA+TGG + chr3_4:55814863-55814882 None:intergenic 35.0%
! GCATCCTTCATCTTTTACAA+AGG + chr3_4:55814954-55814973 None:intergenic 35.0%
!!! CTAGTGCTATTTTGAAATGG+TGG - chr3_4:55814973-55814992 Msa0508080:CDS 35.0%
GAAGGTAAAAGAGAAGATAG+AGG - chr3_4:55815176-55815195 Msa0508080:intron 35.0%
CTGGGTGATTGTATTAACAT+TGG + chr3_4:55815295-55815314 None:intergenic 35.0%
AATTCGACTGGTATTAAGAG+GGG + chr3_4:55815343-55815362 None:intergenic 35.0%
ATAATGGTAAAGTCTTCAGC+TGG - chr3_4:55815574-55815593 Msa0508080:intron 35.0%
TAATGGTAAAGTCTTCAGCT+GGG - chr3_4:55815575-55815594 Msa0508080:intron 35.0%
GTTGTCTAAGTAGCAATTTG+TGG - chr3_4:55815772-55815791 Msa0508080:intron 35.0%
TAAGTAGCAATTTGTGGTTG+TGG - chr3_4:55815778-55815797 Msa0508080:intron 35.0%
TGTATATGTACATACGGTAG+TGG - chr3_4:55816004-55816023 Msa0508080:CDS 35.0%
ATGGTGTAAATTACCATGAC+TGG - chr3_4:55816060-55816079 Msa0508080:CDS 35.0%
!! GGATAGTAATTTCTGGTATG+TGG - chr3_4:55816102-55816121 Msa0508080:five_prime_UTR 35.0%
!! TAATTTCTGGTATGTGGGAA+GGG - chr3_4:55816108-55816127 Msa0508080:five_prime_UTR 35.0%
TGAAGTCAATGTTTAATGCC+TGG - chr3_4:55816302-55816321 Msa0508080:five_prime_UTR 35.0%
GAAGTCAATGTTTAATGCCT+GGG - chr3_4:55816303-55816322 Msa0508080:five_prime_UTR 35.0%
AAGTCAATGTTTAATGCCTG+GGG - chr3_4:55816304-55816323 Msa0508080:five_prime_UTR 35.0%
! AGAGGGTGTATCATTATCAC+TGG + chr3_4:55809837-55809856 None:intergenic 40.0%
GCAACGAAGACAATGCATTT+AGG - chr3_4:55809867-55809886 Msa0508080:three_prime_UTR 40.0%
GGGAAAATCGTAACCATGAA+TGG - chr3_4:55809986-55810005 Msa0508080:three_prime_UTR 40.0%
ATCGTAACCATGAATGGTGA+AGG - chr3_4:55809992-55810011 Msa0508080:three_prime_UTR 40.0%
TTCACATCCTTCACCATTCA+TGG + chr3_4:55810002-55810021 None:intergenic 40.0%
TACATGTGGGGTTATTTACC+GGG - chr3_4:55810040-55810059 Msa0508080:three_prime_UTR 40.0%
TGCTATGGGACTAAAAAGTG+CGG - chr3_4:55810604-55810623 Msa0508080:intron 40.0%
AACGTTCATGGCTGGAAATA+CGG + chr3_4:55810798-55810817 None:intergenic 40.0%
TTGACTTCTACTGTCTCTCT+TGG - chr3_4:55811035-55811054 Msa0508080:intron 40.0%
ACTTCATTTGGAAGAGGGAA+AGG + chr3_4:55811117-55811136 None:intergenic 40.0%
AATCAATGGCAATGTCTTGC+TGG - chr3_4:55811265-55811284 Msa0508080:intron 40.0%
TTATGCGCACTGAGTTGTTA+CGG - chr3_4:55811374-55811393 Msa0508080:intron 40.0%
GAGGCTTCAGATTAGCATTT+AGG + chr3_4:55811414-55811433 None:intergenic 40.0%
ACTTCTCCACAATCTACAAC+AGG + chr3_4:55811877-55811896 None:intergenic 40.0%
TGTGGAGAAGTTTACACATG+GGG - chr3_4:55811886-55811905 Msa0508080:intron 40.0%
TGGAAGGAATGTATTCCTTC+TGG - chr3_4:55811910-55811929 Msa0508080:intron 40.0%
GGAAGGAATGTATTCCTTCT+GGG - chr3_4:55811911-55811930 Msa0508080:intron 40.0%
!! ATTCCTTCTGGGAAGGTATT+TGG - chr3_4:55811922-55811941 Msa0508080:intron 40.0%
! GTATTTGGTGAAACTTCGCA+AGG - chr3_4:55811937-55811956 Msa0508080:intron 40.0%
! ATTTGGTGAAACTTCGCAAG+GGG - chr3_4:55811939-55811958 Msa0508080:intron 40.0%
! AGAATCCTTTTCGTAGACCT+TGG + chr3_4:55812092-55812111 None:intergenic 40.0%
AAGGTCTACGAAAAGGATTC+TGG - chr3_4:55812091-55812110 Msa0508080:CDS 40.0%
! TACGAAAAGGATTCTGGAGA+AGG - chr3_4:55812097-55812116 Msa0508080:CDS 40.0%
! ACGAAAAGGATTCTGGAGAA+GGG - chr3_4:55812098-55812117 Msa0508080:CDS 40.0%
TCTCAAGTCTCAAAATCCAC+AGG - chr3_4:55812259-55812278 Msa0508080:intron 40.0%
!! GAGAAGAAAGTACCAAGAGA+AGG - chr3_4:55812299-55812318 Msa0508080:intron 40.0%
AGTATCTTCAGCAAAGCAAG+CGG - chr3_4:55812324-55812343 Msa0508080:intron 40.0%
GGATTTAGTGTGACAAGACA+CGG + chr3_4:55812391-55812410 None:intergenic 40.0%
TGTCTTGTCACACTAAATCC+AGG - chr3_4:55812391-55812410 Msa0508080:intron 40.0%
GTCTTGTCACACTAAATCCA+GGG - chr3_4:55812392-55812411 Msa0508080:intron 40.0%
TCTTGTCACACTAAATCCAG+GGG - chr3_4:55812393-55812412 Msa0508080:intron 40.0%
! CATGTAACGTGACCATCTTT+TGG - chr3_4:55812512-55812531 Msa0508080:intron 40.0%
GTGATGCTTCAACCAAAAGA+TGG + chr3_4:55812527-55812546 None:intergenic 40.0%
!! GAAGCATCACTTTTGTGCTA+TGG - chr3_4:55812537-55812556 Msa0508080:intron 40.0%
! TTTCAGATTTAGGACAGGTG+TGG - chr3_4:55812611-55812630 Msa0508080:intron 40.0%
! TTCAGATTTAGGACAGGTGT+GGG - chr3_4:55812612-55812631 Msa0508080:intron 40.0%
GCAAGGAATAATATGAGGAG+AGG + chr3_4:55812695-55812714 None:intergenic 40.0%
AGTGAAGAGGAATCAATGCA+AGG + chr3_4:55812712-55812731 None:intergenic 40.0%
!! TTGCATTGATTCCTCTTCAC+TGG - chr3_4:55812711-55812730 Msa0508080:intron 40.0%
!!! GGACACAATTTTAGGATTCC+TGG - chr3_4:55812757-55812776 Msa0508080:intron 40.0%
GATTCCTGGAAGCTGTATAA+AGG - chr3_4:55812771-55812790 Msa0508080:intron 40.0%
ATAGCCTTTATACAGCTTCC+AGG + chr3_4:55812778-55812797 None:intergenic 40.0%
ATAAAGGCTATTGCTTGTGG+TGG - chr3_4:55812787-55812806 Msa0508080:intron 40.0%
! GAAGCCTGCATTAGTTTCTT+TGG - chr3_4:55812878-55812897 Msa0508080:intron 40.0%
! AGCCTGCATTAGTTTCTTTG+GGG - chr3_4:55812880-55812899 Msa0508080:intron 40.0%
TTCCCCAAAGAAACTAATGC+AGG + chr3_4:55812885-55812904 None:intergenic 40.0%
AGGATATGCAAGTGGAGAAA+AGG + chr3_4:55813321-55813340 None:intergenic 40.0%
AAATTCTGCATGCGTAATGC+TGG + chr3_4:55813422-55813441 None:intergenic 40.0%
TCTAGTGTTGTATTCCTCTC+CGG - chr3_4:55813542-55813561 Msa0508080:CDS 40.0%
! TATCAGCCGTTGCTTTCTAT+TGG - chr3_4:55813619-55813638 Msa0508080:CDS 40.0%
TTTGCAAACACACAATGCCA+AGG + chr3_4:55813707-55813726 None:intergenic 40.0%
TGGCATTGTGTGTTTGCAAA+AGG - chr3_4:55813707-55813726 Msa0508080:CDS 40.0%
AGATGAGGTTCACTCTAACA+AGG - chr3_4:55813855-55813874 Msa0508080:intron 40.0%
GATGAGGTTCACTCTAACAA+GGG - chr3_4:55813856-55813875 Msa0508080:intron 40.0%
GGTTGGACTTAATTCATCGT+CGG + chr3_4:55813993-55814012 None:intergenic 40.0%
AATAAGGAAGATACGCAGGT+TGG + chr3_4:55814010-55814029 None:intergenic 40.0%
AACCTGCGTATCTTCCTTAT+TGG - chr3_4:55814009-55814028 Msa0508080:intron 40.0%
ACCTGCGTATCTTCCTTATT+GGG - chr3_4:55814010-55814029 Msa0508080:intron 40.0%
! GATGGTGATGTATATGCGTT+TGG - chr3_4:55814088-55814107 Msa0508080:CDS 40.0%
GTGATGTATATGCGTTTGGT+GGG - chr3_4:55814092-55814111 Msa0508080:CDS 40.0%
TTTAGCGACAATAAGTGTGG+GGG + chr3_4:55814192-55814211 None:intergenic 40.0%
GGCTCATAATCATACCACTA+TGG + chr3_4:55814227-55814246 None:intergenic 40.0%
TTGGCATAGCAATCGTTCTA+CGG - chr3_4:55814673-55814692 Msa0508080:intron 40.0%
TGGTTTCCATCAAAAGAGAG+AGG - chr3_4:55814854-55814873 Msa0508080:intron 40.0%
GGTTTCCATCAAAAGAGAGA+GGG - chr3_4:55814855-55814874 Msa0508080:intron 40.0%
ATATCAGACCTCACAGTAAG+AGG - chr3_4:55815028-55815047 Msa0508080:intron 40.0%
TATCAGACCTCACAGTAAGA+GGG - chr3_4:55815029-55815048 Msa0508080:intron 40.0%
GTAAAAGAGAAGATAGAGGG+TGG - chr3_4:55815180-55815199 Msa0508080:intron 40.0%
! AACCGAGTGAAGAGAGTTTT+AGG - chr3_4:55815212-55815231 Msa0508080:intron 40.0%
CACCTAAAACTCTCTTCACT+CGG + chr3_4:55815217-55815236 None:intergenic 40.0%
AGACTCTACACACTTCACTT+GGG + chr3_4:55815252-55815271 None:intergenic 40.0%
AAGACTCTACACACTTCACT+TGG + chr3_4:55815253-55815272 None:intergenic 40.0%
CATTGGTCGCCAATATAACT+AGG + chr3_4:55815278-55815297 None:intergenic 40.0%
ATTCGACTGGTATTAAGAGG+GGG + chr3_4:55815342-55815361 None:intergenic 40.0%
AATGGTAAAGTCTTCAGCTG+GGG - chr3_4:55815576-55815595 Msa0508080:intron 40.0%
CGACTTCAGATGGAATGTTT+CGG + chr3_4:55815830-55815849 None:intergenic 40.0%
TAGCTAACAAAATTGGGTCG+AGG + chr3_4:55815941-55815960 None:intergenic 40.0%
TTAATAGCTAGAGCCAGTCA+TGG + chr3_4:55816076-55816095 None:intergenic 40.0%
! GGCTCTAGCTATTAACAACA+TGG - chr3_4:55816081-55816100 Msa0508080:exon 40.0%
!! GTAATTTCTGGTATGTGGGA+AGG - chr3_4:55816107-55816126 Msa0508080:five_prime_UTR 40.0%
! GTATGTGGGAAGGGAATTTT+GGG - chr3_4:55816117-55816136 Msa0508080:five_prime_UTR 40.0%
TAAAGATACAATGTCACCCC+AGG + chr3_4:55816323-55816342 None:intergenic 40.0%
TGGTGAAGGATGTGAAGTGA+AGG - chr3_4:55810006-55810025 Msa0508080:three_prime_UTR 45.0%
!! ACAAGTACCGGCGTCAATAA+CGG + chr3_4:55810085-55810104 None:intergenic 45.0%
TATTGACGCCGGTACTTGTT+AGG - chr3_4:55810086-55810105 Msa0508080:three_prime_UTR 45.0%
! ATTGACGCCGGTACTTGTTA+GGG - chr3_4:55810087-55810106 Msa0508080:three_prime_UTR 45.0%
GTCTGGTGGTTATAACTGGA+AGG - chr3_4:55810120-55810139 Msa0508080:three_prime_UTR 45.0%
!! AACTGGAAGGATGTTTCTGG+TGG - chr3_4:55810133-55810152 Msa0508080:three_prime_UTR 45.0%
GGATTTGCCATGGCTATATC+TGG - chr3_4:55810163-55810182 Msa0508080:exon 45.0%
CTTGTCCCCGACTAAATTGT+CGG - chr3_4:55810575-55810594 Msa0508080:intron 45.0%
AGGCCAAAGTTATGTGACGT+CGG - chr3_4:55810985-55811004 Msa0508080:intron 45.0%
TTGTAAAAGCTGCTTCTGCG+TGG - chr3_4:55811142-55811161 Msa0508080:intron 45.0%
TGTAAAAGCTGCTTCTGCGT+GGG - chr3_4:55811143-55811162 Msa0508080:intron 45.0%
AGAAAAGGAATGGAGGGAGT+AGG - chr3_4:55811776-55811795 Msa0508080:intron 45.0%
TGCTGTCCTGTTGTAGATTG+TGG - chr3_4:55811868-55811887 Msa0508080:intron 45.0%
GAGAAGTTTACACATGGGGA+TGG - chr3_4:55811890-55811909 Msa0508080:intron 45.0%
AGTTTACACATGGGGATGGA+AGG - chr3_4:55811894-55811913 Msa0508080:intron 45.0%
! GGAATGTATTCCTTCTGGGA+AGG - chr3_4:55811915-55811934 Msa0508080:intron 45.0%
TCACCAAATACCTTCCCAGA+AGG + chr3_4:55811928-55811947 None:intergenic 45.0%
CTTAGCCAAGGTCTACGAAA+AGG - chr3_4:55812084-55812103 Msa0508080:CDS 45.0%
CAAGTCTCAAAATCCACAGG+AGG - chr3_4:55812262-55812281 Msa0508080:intron 45.0%
ACTTGAAACAGTTCCTCCTG+TGG + chr3_4:55812278-55812297 None:intergenic 45.0%
ACAGGAGGAACTGTTTCAAG+TGG - chr3_4:55812277-55812296 Msa0508080:intron 45.0%
! ATAACAAGTGTTGCTGCTGG+TGG - chr3_4:55812421-55812440 Msa0508080:intron 45.0%
! TAACAAGTGTTGCTGCTGGT+GGG - chr3_4:55812422-55812441 Msa0508080:intron 45.0%
CGTCATACCCTAGTATTGTC+AGG - chr3_4:55812445-55812464 Msa0508080:intron 45.0%
! TCAGATTTAGGACAGGTGTG+GGG - chr3_4:55812613-55812632 Msa0508080:intron 45.0%
!! TGATTCCTCTTCACTGGTTC+AGG - chr3_4:55812717-55812736 Msa0508080:intron 45.0%
!! GATTCCTCTTCACTGGTTCA+GGG - chr3_4:55812718-55812737 Msa0508080:intron 45.0%
CGACATAGTGCAGTAATCAC+AGG - chr3_4:55812811-55812830 Msa0508080:intron 45.0%
TACCTGACTGGTATCAGGAT+TGG - chr3_4:55812935-55812954 Msa0508080:intron 45.0%
TGAGAGGGAGAAACTACAAC+AGG - chr3_4:55813025-55813044 Msa0508080:intron 45.0%
AGCTGTGCTTGCATTTGGTT+GGG - chr3_4:55813249-55813268 Msa0508080:intron 45.0%
GCATTTGGTTGGGGACTTTA+TGG - chr3_4:55813259-55813278 Msa0508080:intron 45.0%
!! CTTACCTGTGGTAGTTTGCT+TGG - chr3_4:55813497-55813516 Msa0508080:CDS 45.0%
CTAGTGTTGTATTCCTCTCC+GGG - chr3_4:55813543-55813562 Msa0508080:CDS 45.0%
ACCATGCAGTTCACCTTACT+GGG - chr3_4:55813569-55813588 Msa0508080:CDS 45.0%
AAAACGCATGGAACCCAGTA+AGG + chr3_4:55813585-55813604 None:intergenic 45.0%
! GTTTTTGATAAGTGCGGGCA+AGG - chr3_4:55813962-55813981 Msa0508080:intron 45.0%
CAAATAGAGGGAATTGCTGC+CGG - chr3_4:55814037-55814056 Msa0508080:intron 45.0%
ACAGACAGTATGCCACAAAC+CGG + chr3_4:55814059-55814078 None:intergenic 45.0%
ACTGTCTGTACATCTGCTGA+TGG - chr3_4:55814070-55814089 Msa0508080:intron 45.0%
GGTGATGTATATGCGTTTGG+TGG - chr3_4:55814091-55814110 Msa0508080:CDS 45.0%
! CGTTTGGTGGGAATCAGTTT+GGG - chr3_4:55814104-55814123 Msa0508080:CDS 45.0%
!! AACTGGTTCTGATCAAGCTG+AGG - chr3_4:55814135-55814154 Msa0508080:CDS 45.0%
TAAGAGGGTCTGTCGGAAAA+GGG - chr3_4:55815044-55815063 Msa0508080:intron 45.0%
CTGTCGGAAAAGGGATAAAG+AGG - chr3_4:55815053-55815072 Msa0508080:intron 45.0%
AGAGTGAAGGAAACACAGCT+GGG + chr3_4:55815313-55815332 None:intergenic 45.0%
AAGAGTGAAGGAAACACAGC+TGG + chr3_4:55815314-55815333 None:intergenic 45.0%
AGCTGGGGATGGAACAAATA+TGG - chr3_4:55815591-55815610 Msa0508080:intron 45.0%
GGGATGGAACAAATATGGAC+AGG - chr3_4:55815596-55815615 Msa0508080:intron 45.0%
AATTTGTGGTTGTGGCAGCT+CGG - chr3_4:55815786-55815805 Msa0508080:intron 45.0%
CCTTCAATTGCGACTTCAGA+TGG + chr3_4:55815840-55815859 None:intergenic 45.0%
! CCATCTGAAGTCGCAATTGA+AGG - chr3_4:55815837-55815856 Msa0508080:intron 45.0%
GTAGCTAAGAACGTTGCATG+TGG - chr3_4:55815864-55815883 Msa0508080:intron 45.0%
CTAAGAACGTTGCATGTGGT+TGG - chr3_4:55815868-55815887 Msa0508080:intron 45.0%
!! TTGGTGGCACACTCTTCTTT+TGG - chr3_4:55815887-55815906 Msa0508080:intron 45.0%
AGGAAACCATGGCATCAAGT+CGG + chr3_4:55815921-55815940 None:intergenic 45.0%
AAATTGGGTCGAGGAAACCA+TGG + chr3_4:55815932-55815951 None:intergenic 45.0%
! GGTATGTGGGAAGGGAATTT+TGG - chr3_4:55816116-55816135 Msa0508080:five_prime_UTR 45.0%
TGAGTCCTAACATGAAGCTG+TGG - chr3_4:55816232-55816251 Msa0508080:five_prime_UTR 45.0%
GAGTCCTAACATGAAGCTGT+GGG - chr3_4:55816233-55816252 Msa0508080:five_prime_UTR 45.0%
!!! TTTTAAAATATGAAATAAAA+AGG + chr3_4:55815654-55815673 None:intergenic 5.0%
CACGTGGTTCAACTAACACG+TGG + chr3_4:55809790-55809809 None:intergenic 50.0%
AACCACGTGAGAATCCTACG+TGG - chr3_4:55809801-55809820 Msa0508080:three_prime_UTR 50.0%
GTCAATAACGGCGTCCTTTG+CGG + chr3_4:55810073-55810092 None:intergenic 50.0%
TTATAACCACCAGACGACGC+CGG + chr3_4:55810115-55810134 None:intergenic 50.0%
CGTCGTCTGGTGGTTATAAC+TGG - chr3_4:55810116-55810135 Msa0508080:three_prime_UTR 50.0%
!! TGGAAGGATGTTTCTGGTGG+TGG - chr3_4:55810136-55810155 Msa0508080:three_prime_UTR 50.0%
!! GATGTTTCTGGTGGTGGTTG+TGG - chr3_4:55810142-55810161 Msa0508080:three_prime_UTR 50.0%
TGGTGGTTGTGGATTTGCCA+TGG - chr3_4:55810153-55810172 Msa0508080:three_prime_UTR 50.0%
TGGGGTTCGACAGATGATCT+AGG - chr3_4:55810965-55810984 Msa0508080:intron 50.0%
GGCCAAAGTTATGTGACGTC+GGG - chr3_4:55810986-55811005 Msa0508080:intron 50.0%
TGCCCGACGTCACATAACTT+TGG + chr3_4:55810991-55811010 None:intergenic 50.0%
TATGTGACGTCGGGCAAACA+TGG - chr3_4:55810995-55811014 Msa0508080:intron 50.0%
ATGTGACGTCGGGCAAACAT+GGG - chr3_4:55810996-55811015 Msa0508080:intron 50.0%
TTTGGAAGAGGGAAAGGCTC+TGG + chr3_4:55811111-55811130 None:intergenic 50.0%
! GGCACATTGTGTTGCTGCAA+CGG - chr3_4:55811164-55811183 Msa0508080:intron 50.0%
! GCACATTGTGTTGCTGCAAC+GGG - chr3_4:55811165-55811184 Msa0508080:intron 50.0%
CTAAGCTTAGACCACCTCCT+GGG + chr3_4:55812069-55812088 None:intergenic 50.0%
AGGTGGTCTAAGCTTAGCCA+AGG - chr3_4:55812072-55812091 Msa0508080:CDS 50.0%
! ATTTAGGACAGGTGTGGGGT+TGG - chr3_4:55812617-55812636 Msa0508080:intron 50.0%
! TTTAGGACAGGTGTGGGGTT+GGG - chr3_4:55812618-55812637 Msa0508080:intron 50.0%
TTTGGGCTCCAGAGTACGTA+TGG - chr3_4:55812666-55812685 Msa0508080:intron 50.0%
AGAGGACACCATACGTACTC+TGG + chr3_4:55812677-55812696 None:intergenic 50.0%
! CAGGGAAGCATGAGTTCAGA+AGG - chr3_4:55812736-55812755 Msa0508080:intron 50.0%
CACCAATCCTGATACCAGTC+AGG + chr3_4:55812940-55812959 None:intergenic 50.0%
CTGACTGGTATCAGGATTGG+TGG - chr3_4:55812938-55812957 Msa0508080:intron 50.0%
CCTGCTGAAATGACAGATGC+CGG - chr3_4:55813226-55813245 Msa0508080:intron 50.0%
ACCAAATGCAAGCACAGCTC+CGG + chr3_4:55813248-55813267 None:intergenic 50.0%
GAGCTGTGCTTGCATTTGGT+TGG - chr3_4:55813248-55813267 Msa0508080:intron 50.0%
GCTGTGCTTGCATTTGGTTG+GGG - chr3_4:55813250-55813269 Msa0508080:intron 50.0%
TGGTTGGGGACTTTATGGTC+AGG - chr3_4:55813264-55813283 Msa0508080:intron 50.0%
CTCCACTTGCATATCCTAGC+TGG - chr3_4:55813324-55813343 Msa0508080:CDS 50.0%
TGCCAGCTAGGATATGCAAG+TGG + chr3_4:55813329-55813348 None:intergenic 50.0%
CACAGGTAAGAACACGTCAG+GGG + chr3_4:55813487-55813506 None:intergenic 50.0%
CCACAGGTAAGAACACGTCA+GGG + chr3_4:55813488-55813507 None:intergenic 50.0%
ACCACAGGTAAGAACACGTC+AGG + chr3_4:55813489-55813508 None:intergenic 50.0%
GGATCCAAGCAAACTACCAC+AGG + chr3_4:55813504-55813523 None:intergenic 50.0%
GACCATGCAGTTCACCTTAC+TGG - chr3_4:55813568-55813587 Msa0508080:CDS 50.0%
ACCCAGTAAGGTGAACTGCA+TGG + chr3_4:55813573-55813592 None:intergenic 50.0%
GCCCAATAAGGAAGATACGC+AGG + chr3_4:55814014-55814033 None:intergenic 50.0%
! GCGTTTGGTGGGAATCAGTT+TGG - chr3_4:55814103-55814122 Msa0508080:CDS 50.0%
! GACAATAAGTGTGGGGGTGT+GGG + chr3_4:55814186-55814205 None:intergenic 50.0%
GCAGACTCTACCAAGACTAC+TGG - chr3_4:55814540-55814559 Msa0508080:intron 50.0%
CTCGGACAATCCAGTAGTCT+TGG + chr3_4:55814553-55814572 None:intergenic 50.0%
ACTACTGGATTGTCCGAGCT+TGG - chr3_4:55814555-55814574 Msa0508080:intron 50.0%
CGTCACACTGCTATAGTGAC+AGG - chr3_4:55814613-55814632 Msa0508080:intron 50.0%
CTCACAGTAAGAGGGTCTGT+CGG - chr3_4:55815037-55815056 Msa0508080:intron 50.0%
GTAAGAGGGTCTGTCGGAAA+AGG - chr3_4:55815043-55815062 Msa0508080:intron 50.0%
GAGGGGGAAGAAAAGAGTGA+AGG + chr3_4:55815326-55815345 None:intergenic 50.0%
GTAAAGTCTTCAGCTGGGGA+TGG - chr3_4:55815580-55815599 Msa0508080:intron 50.0%
AGAACGTTGCATGTGGTTGG+TGG - chr3_4:55815871-55815890 Msa0508080:intron 50.0%
ATGGCATCAAGTCGGTGACT+CGG + chr3_4:55815913-55815932 None:intergenic 50.0%
TGCTCCCACAGCTTCATGTT+AGG + chr3_4:55816240-55816259 None:intergenic 50.0%
AACATGAAGCTGTGGGAGCA+TGG - chr3_4:55816240-55816259 Msa0508080:five_prime_UTR 50.0%
! ACATGAAGCTGTGGGAGCAT+GGG - chr3_4:55816241-55816260 Msa0508080:five_prime_UTR 50.0%
TACCGGGAGCTTTACCGCAA+AGG - chr3_4:55810056-55810075 Msa0508080:three_prime_UTR 55.0%
GTCCTTTGCGGTAAAGCTCC+CGG + chr3_4:55810061-55810080 None:intergenic 55.0%
AAGGACGCCGTTATTGACGC+CGG - chr3_4:55810075-55810094 Msa0508080:three_prime_UTR 55.0%
! GCCGGTACTTGTTAGGGTTC+CGG - chr3_4:55810093-55810112 Msa0508080:three_prime_UTR 55.0%
GCCGGAACCCTAACAAGTAC+CGG + chr3_4:55810097-55810116 None:intergenic 55.0%
ACGGAGTTCAGCCCGATGTT+TGG + chr3_4:55810779-55810798 None:intergenic 55.0%
TGTGACGTCGGGCAAACATG+GGG - chr3_4:55810997-55811016 Msa0508080:intron 55.0%
GCTAAGCTTAGACCACCTCC+TGG + chr3_4:55812070-55812089 None:intergenic 55.0%
GCGGCTCAAACCTCATCATC+TGG - chr3_4:55812343-55812362 Msa0508080:intron 55.0%
TTAGGACAGGTGTGGGGTTG+GGG - chr3_4:55812619-55812638 Msa0508080:intron 55.0%
GTTGGGGCTATGGAGGTGAA+GGG - chr3_4:55812635-55812654 Msa0508080:intron 55.0%
TATGGAGGTGAAGGGCAGCT+TGG - chr3_4:55812643-55812662 Msa0508080:intron 55.0%
AGGTGAAGGGCAGCTTGGTT+TGG - chr3_4:55812648-55812667 Msa0508080:intron 55.0%
GGTGAAGGGCAGCTTGGTTT+GGG - chr3_4:55812649-55812668 Msa0508080:intron 55.0%
GCTTCCCTGAACCAGTGAAG+AGG + chr3_4:55812725-55812744 None:intergenic 55.0%
! CCGGCATCTGTCATTTCAGC+AGG + chr3_4:55813229-55813248 None:intergenic 55.0%
CCCTGACGTGTTCTTACCTG+TGG - chr3_4:55813485-55813504 Msa0508080:CDS 55.0%
GGTGAACTGCATGGTCTTCC+CGG + chr3_4:55813564-55813583 None:intergenic 55.0%
!! AGGGAATTGCTGCCGGTTTG+TGG - chr3_4:55814044-55814063 Msa0508080:intron 55.0%
TGGGAATCAGTTTGGGCAGC+TGG - chr3_4:55814111-55814130 Msa0508080:CDS 55.0%
GGGAATCAGTTTGGGCAGCT+GGG - chr3_4:55814112-55814131 Msa0508080:CDS 55.0%
GGTCATCTGTGGGATGGCTA+GGG + chr3_4:55814165-55814184 None:intergenic 55.0%
CGACAATAAGTGTGGGGGTG+TGG + chr3_4:55814187-55814206 None:intergenic 55.0%
GTGACGAGCCCCACAAGATA+TGG + chr3_4:55814599-55814618 None:intergenic 55.0%
CGACAGACCCTCTTACTGTG+AGG + chr3_4:55815039-55815058 None:intergenic 55.0%
!! GAGTCACCGACTTGATGCCA+TGG - chr3_4:55815912-55815931 Msa0508080:intron 55.0%
CGCCACGTAGGATTCTCACG+TGG + chr3_4:55809806-55809825 None:intergenic 60.0%
TCGGGGACAAGAACTGCCGA+TGG + chr3_4:55810566-55810585 None:intergenic 60.0%
TACAGATACCTGCCCCTCCC+AGG - chr3_4:55812049-55812068 Msa0508080:CDS 60.0%
CTTAGACCACCTCCTGGGAG+GGG + chr3_4:55812064-55812083 None:intergenic 60.0%
GCTTAGACCACCTCCTGGGA+GGG + chr3_4:55812065-55812084 None:intergenic 60.0%
AGCTTAGACCACCTCCTGGG+AGG + chr3_4:55812066-55812085 None:intergenic 60.0%
GGTTGGGGCTATGGAGGTGA+AGG - chr3_4:55812634-55812653 Msa0508080:intron 60.0%
GCCGGAGCTGTGCTTGCATT+TGG - chr3_4:55813244-55813263 Msa0508080:intron 60.0%
ACTGCATGGTCTTCCCGGAG+AGG + chr3_4:55813559-55813578 None:intergenic 60.0%
CAGTTTGGGCAGCTGGGAAC+TGG - chr3_4:55814118-55814137 Msa0508080:CDS 60.0%
GGGTCATCTGTGGGATGGCT+AGG + chr3_4:55814166-55814185 None:intergenic 60.0%
GGTGTGGGTCATCTGTGGGA+TGG + chr3_4:55814171-55814190 None:intergenic 60.0%
! TGGGGGTGTGGGTCATCTGT+GGG + chr3_4:55814175-55814194 None:intergenic 60.0%
TTCGGTCAATCACGTCCCCG+AGG + chr3_4:55815812-55815831 None:intergenic 60.0%
CTGGAATGCGTGCGCCACGT+AGG + chr3_4:55809818-55809837 None:intergenic 65.0%
GTTAGGGTTCCGGCGTCGTC+TGG - chr3_4:55810103-55810122 Msa0508080:three_prime_UTR 65.0%
AGATACCTGCCCCTCCCAGG+AGG - chr3_4:55812052-55812071 Msa0508080:CDS 65.0%
CAGGTGTGGGGTTGGGGCTA+TGG - chr3_4:55812625-55812644 Msa0508080:intron 65.0%
GTGTGGGGTTGGGGCTATGG+AGG - chr3_4:55812628-55812647 Msa0508080:intron 65.0%
! GTGGGGGTGTGGGTCATCTG+TGG + chr3_4:55814176-55814195 None:intergenic 65.0%
TGGTTGTGGCAGCTCGGCCT+CGG - chr3_4:55815792-55815811 Msa0508080:intron 65.0%
AGGGTTCCGGCGTCGTCTGG+TGG - chr3_4:55810106-55810125 Msa0508080:three_prime_UTR 70.0%
TACCTGCCCCTCCCAGGAGG+TGG - chr3_4:55812055-55812074 Msa0508080:CDS 70.0%
GGTTGTGGCAGCTCGGCCTC+GGG - chr3_4:55815793-55815812 Msa0508080:intron 70.0%
GTTGTGGCAGCTCGGCCTCG+GGG - chr3_4:55815794-55815813 Msa0508080:intron 70.0%
GACCACCTCCTGGGAGGGGC+AGG + chr3_4:55812060-55812079 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 55809733 55816367 55809733 ID=Msa0508080;Name=Msa0508080
chr3_4 mRNA 55809733 55816367 55809733 ID=Msa0508080-mRNA-1;Parent=Msa0508080;Name=Msa0508080-mRNA-1;_AED=0.16;_eAED=0.16;_QI=268|1|0.9|1|1|1|10|441|514
chr3_4 exon 55809733 55810296 55809733 ID=Msa0508080-mRNA-1:exon:12530;Parent=Msa0508080-mRNA-1
chr3_4 exon 55810483 55810526 55810483 ID=Msa0508080-mRNA-1:exon:12529;Parent=Msa0508080-mRNA-1
chr3_4 exon 55811466 55811556 55811466 ID=Msa0508080-mRNA-1:exon:12528;Parent=Msa0508080-mRNA-1
chr3_4 exon 55811944 55812126 55811944 ID=Msa0508080-mRNA-1:exon:12527;Parent=Msa0508080-mRNA-1
chr3_4 exon 55812815 55812858 55812815 ID=Msa0508080-mRNA-1:exon:12526;Parent=Msa0508080-mRNA-1
chr3_4 exon 55813268 55813852 55813268 ID=Msa0508080-mRNA-1:exon:12525;Parent=Msa0508080-mRNA-1
chr3_4 exon 55814085 55814216 55814085 ID=Msa0508080-mRNA-1:exon:12524;Parent=Msa0508080-mRNA-1
chr3_4 exon 55814914 55814998 55814914 ID=Msa0508080-mRNA-1:exon:12523;Parent=Msa0508080-mRNA-1
chr3_4 exon 55815082 55815155 55815082 ID=Msa0508080-mRNA-1:exon:12522;Parent=Msa0508080-mRNA-1
chr3_4 exon 55815916 55816367 55815916 ID=Msa0508080-mRNA-1:exon:12521;Parent=Msa0508080-mRNA-1
chr3_4 five_prime_UTR 55816100 55816367 55816100 ID=Msa0508080-mRNA-1:five_prime_utr;Parent=Msa0508080-mRNA-1
chr3_4 CDS 55815916 55816099 55815916 ID=Msa0508080-mRNA-1:cds;Parent=Msa0508080-mRNA-1
chr3_4 CDS 55815082 55815155 55815082 ID=Msa0508080-mRNA-1:cds;Parent=Msa0508080-mRNA-1
chr3_4 CDS 55814914 55814998 55814914 ID=Msa0508080-mRNA-1:cds;Parent=Msa0508080-mRNA-1
chr3_4 CDS 55814085 55814216 55814085 ID=Msa0508080-mRNA-1:cds;Parent=Msa0508080-mRNA-1
chr3_4 CDS 55813268 55813852 55813268 ID=Msa0508080-mRNA-1:cds;Parent=Msa0508080-mRNA-1
chr3_4 CDS 55812815 55812858 55812815 ID=Msa0508080-mRNA-1:cds;Parent=Msa0508080-mRNA-1
chr3_4 CDS 55811944 55812126 55811944 ID=Msa0508080-mRNA-1:cds;Parent=Msa0508080-mRNA-1
chr3_4 CDS 55811466 55811556 55811466 ID=Msa0508080-mRNA-1:cds;Parent=Msa0508080-mRNA-1
chr3_4 CDS 55810483 55810526 55810483 ID=Msa0508080-mRNA-1:cds;Parent=Msa0508080-mRNA-1
chr3_4 CDS 55810174 55810296 55810174 ID=Msa0508080-mRNA-1:cds;Parent=Msa0508080-mRNA-1
chr3_4 three_prime_UTR 55809733 55810173 55809733 ID=Msa0508080-mRNA-1:three_prime_utr;Parent=Msa0508080-mRNA-1
Gene Sequence

>Msa0508080

ATGAATGGTGAAGGATGTGAAGTGAAGGAGAAAATGGTTTACATGTGGGGTTATTTACCGGGAGCTTTACCGCAAAGGACGCCGTTATTGACGCCGGTACTTGTTAGGGTTCCGGCGTCGTCTGGTGGTTATAACTGGAAGGATGTTTCTGGTGGTGGTTGTGGATTTGCCATGGCTATATCTGAACAAGGAAAGCTTATAACATGGGGTTCGACAGATGATCTAGGCCAAAGTTATGTGACGTCGGGCAAACATGGGGAAACTCCAGAGCCTTTCCCTCTTCCAAATGAAGTGTCTATTGTAAAAGCTGCTTCTGCGTGGGCACATTGTGTTGCTGCAACGGATTGTGGAGAAGTTTACACATGGGGATGGAAGGAATGTATTCCTTCTGGGAAGGTATTTGGTGAAACTTCGCAAGGGGTAAGTCCTGAAAAAGATGCAAAAGGAAAGCAGAGTTCATTCTTGACAGAACAAGTGAGCTCTCGTTCTCAAGTCTCAAAATCCACAGGAGGAACTGTTTCAAGTGGAGAAGAAAGTACCAAGAGAAGGAAAGTATCTTCAGCAAAGCAAGCGGCTCAAACCTCATCATCTGGTGATGATATTCTAACAGCAATGCCGTGTCTTGTCACACTAAATCCAGGGGTAAAAATAACAAGTGTTGCTGCTGGTGGGCGTCATACCCTAGTATTGTCAGGTATTGACTTCATATGGATTATTTATTCTCCCGAGCTTAAAATTTCATGTAACGTGACCATCTTTTGGTTGAAGCATCACTTTTGTGCTATGGAAGATCAGCCATACAGTCTTAGACATGTCATTAATTGTAACTTTCTGAATTTTTCAGATTTAGGACAGGTGTGGGGTTGGGGCTATGGAGGTGAAGGGCAGCTTGGTTTGGGCTCCAGAGTACGTATGGTGTCCTCTCCTCATATTATTCCTTGCATTGATTCCTCTTCACTGGTTCAGGGAAGCATGAGTTCAGAAGGACACAATTTTAGGATTCCTGGAAGCTGTATAAAGGCTATTGCTTGTGGTGGTCGACATAGTGCAGTAATCACAGATGCCGGAGCTGTGCTTGCATTTGGTTGGGGACTTTATGGTCAGTGCGGGCAAGGAAGCACCGACGATGAATTAAGTCCAACCTGCGTATCTTCCTTATTGGGCATTCAAATAGAGGGAATTGCTGCCGGTTTGTGGCATACTGTCTGTACATCTGCTGATGGTGATGTATATGCGTTTGGTGGGAATCAGTTTGGGCAGCTGGGAACTGGTTCTGATCAAGCTGAGACTCTACCAAGACTACTGGATTGTCCGAGCTTGGAAAATGTGAATGTAAAAACCATATCTTGTGGGGCTCGTCACACTGCTATAGTGACAGATAATGGTAAAGTCTTCAGCTGGGGATGGAACAAATATGGACAGCTCGGCCTCGGGGACGTGATTGACCGAAACATTCCATCTGAAGTCGCAATTGAAGGTTGTGTAGCTAAGAACGTTGCATGTGGTTGGTGGCACACTCTTCTTTTGGCCGAGTCACCGACTTGA
Protein sequence

>Msa0508080

MNGEGCEVKEKMVYMWGYLPGALPQRTPLLTPVLVRVPASSGGYNWKDVSGGGCGFAMAISEQGKLITWGSTDDLGQSYVTSGKHGETPEPFPLPNEVSIVKAASAWAHCVAATDCGEVYTWGWKECIPSGKVFGETSQGVSPEKDAKGKQSSFLTEQVSSRSQVSKSTGGTVSSGEESTKRRKVSSAKQAAQTSSSGDDILTAMPCLVTLNPGVKITSVAAGGRHTLVLSGIDFIWIIYSPELKISCNVTIFWLKHHFCAMEDQPYSLRHVINCNFLNFSDLGQVWGWGYGGEGQLGLGSRVRMVSSPHIIPCIDSSSLVQGSMSSEGHNFRIPGSCIKAIACGGRHSAVITDAGAVLAFGWGLYGQCGQGSTDDELSPTCVSSLLGIQIEGIAAGLWHTVCTSADGDVYAFGGNQFGQLGTGSDQAETLPRLLDCPSLENVNVKTISCGARHTAIVTDNGKVFSWGWNKYGQLGLGDVIDRNIPSEVAIEGCVAKNVACGWWHTLLLAESPT*