AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0074140

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0074140 MtrunA17_Chr1g0181771 94.966 298 9 1 1 292 1 298 0.0 581
Msa0074140 MtrunA17_Chr8g0348391 53.846 260 98 5 35 273 52 310 9.07e-86 260
Msa0074140 MtrunA17_Chr6g0469431 64.384 146 41 4 17 153 18 161 3.09e-56 181
Msa0074140 MtrunA17_Chr6g0481061 57.843 102 35 1 28 121 38 139 9.04e-26 106
Msa0074140 MtrunA17_Chr3g0109791 59.140 93 30 1 36 120 46 138 1.32e-25 104
Msa0074140 MtrunA17_Chr5g0433851 61.972 71 27 0 28 98 24 94 6.24e-25 103
Msa0074140 MtrunA17_Chr7g0276421 57.143 70 30 0 28 97 7 76 6.48e-23 98.6
Msa0074140 MtrunA17_Chr6g0469441 68.519 54 17 0 206 259 24 77 1.16e-21 87.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0074140 AT3G09600.1 66.667 261 74 4 21 269 17 276 2.71e-123 354
Msa0074140 AT3G09600.7 66.667 261 74 4 21 269 17 276 2.71e-123 354
Msa0074140 AT3G09600.2 65.799 269 73 5 21 277 17 278 9.14e-121 347
Msa0074140 AT3G09600.6 65.799 269 73 5 21 277 17 278 9.14e-121 347
Msa0074140 AT3G09600.4 68.127 251 67 4 21 259 17 266 1.44e-120 347
Msa0074140 AT5G02840.3 64.706 255 71 5 30 267 31 283 4.54e-111 323
Msa0074140 AT5G02840.1 63.178 258 76 5 30 270 31 286 6.38e-109 318
Msa0074140 AT5G02840.2 63.178 258 76 5 30 270 31 286 6.38e-109 318
Msa0074140 AT3G09600.3 65.438 217 62 4 65 269 5 220 6.52e-98 288
Msa0074140 AT3G09600.8 65.438 217 62 4 65 269 5 220 6.52e-98 288
Msa0074140 AT5G02840.4 63.913 230 64 5 30 242 31 258 3.77e-96 284
Msa0074140 AT5G02840.5 63.478 230 65 5 30 242 31 258 1.61e-95 283
Msa0074140 AT3G09600.5 64.444 225 61 5 65 277 5 222 6.85e-95 280
Msa0074140 AT3G09600.9 64.444 225 61 5 65 277 5 222 6.85e-95 280
Msa0074140 AT5G52660.1 52.688 279 120 4 19 285 44 322 5.16e-87 263
Msa0074140 AT5G52660.2 51.071 280 124 4 19 285 44 323 4.47e-86 261
Msa0074140 AT1G01520.1 55.906 254 94 6 26 269 40 285 4.90e-85 257
Msa0074140 AT4G01280.2 51.852 270 111 6 17 268 29 297 5.35e-84 255
Msa0074140 AT4G01280.1 51.301 269 113 6 17 268 29 296 8.93e-83 251
Msa0074140 AT1G01520.3 56.967 244 87 6 26 259 40 275 1.27e-82 251
Msa0074140 AT1G01520.2 55.507 227 83 6 26 242 40 258 7.80e-72 222
Msa0074140 AT1G01520.4 55.507 227 83 6 26 242 40 258 7.80e-72 222
Msa0074140 AT5G17300.1 44.828 145 60 3 29 161 37 173 7.18e-28 111
Msa0074140 AT5G37260.1 56.701 97 38 1 28 120 17 113 2.17e-26 105
Msa0074140 AT1G01520.5 71.429 63 18 0 207 269 139 201 2.72e-26 103
Msa0074140 AT1G01060.8 35.754 179 101 4 26 193 3 178 8.12e-25 104
Msa0074140 AT1G01060.2 35.754 179 101 4 26 193 3 178 8.12e-25 104
Msa0074140 AT1G01060.3 35.754 179 101 4 26 193 3 178 8.12e-25 104
Msa0074140 AT1G01060.1 35.754 179 101 4 26 193 3 178 8.12e-25 104
Msa0074140 AT1G01060.7 35.754 179 101 4 26 193 3 178 8.12e-25 104
Msa0074140 AT1G18330.1 55.319 94 34 2 36 121 39 132 2.29e-24 101
Msa0074140 AT1G01060.4 51.250 80 39 0 26 105 3 82 2.41e-24 103
Msa0074140 AT3G10113.1 55.319 94 34 2 36 121 54 147 4.75e-24 100
Msa0074140 AT1G18330.2 55.319 94 34 2 36 121 65 158 5.41e-24 100
Msa0074140 AT2G46830.1 59.722 72 29 0 26 97 3 74 2.63e-23 100

Find 93 sgRNAs with CRISPR-Local

Find 601 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTACACATGTGGCATATT+TGG 0.134325 1_2:-48387599 None:intergenic
CTTACAATGGGATCAAAATT+AGG 0.151868 1_2:-48385092 None:intergenic
CATAATAGAAACTAACTAAT+TGG 0.195892 1_2:-48379877 None:intergenic
CTACCAGCATCCATTGCTTT+TGG 0.209435 1_2:+48380996 Msa0074140:intron
CCGGACTTTGCTGAAGTTTA+CGG 0.260906 1_2:+48381753 Msa0074140:CDS
TGAGTTAGAATTAGAGTTCA+TGG 0.279860 1_2:-48379925 None:intergenic
CTCACAGTTTCAAAGTTTAT+AGG 0.310240 1_2:-48381840 None:intergenic
TGGCTCTAAAACAGTTATTC+AGG 0.322186 1_2:+48380216 Msa0074140:CDS
CTTGACTTGGTAATTGTGTA+AGG 0.342024 1_2:-48380014 None:intergenic
TCACAGTTTCAAAGTTTATA+GGG 0.345459 1_2:-48381839 None:intergenic
GCTCAATAATCTAATGAAAA+AGG 0.354018 1_2:-48387647 None:intergenic
ACGATATTTAACAGGTTTGC+CGG 0.354143 1_2:+48381734 Msa0074140:intron
ATTGTTATATTGCTCTGATT+TGG 0.364135 1_2:+48387467 Msa0074140:three_prime_UTR
TTACAATGGGATCAAAATTA+GGG 0.364435 1_2:-48385091 None:intergenic
CTAGTTGTTGTAGTTGTTGT+TGG 0.376561 1_2:-48379957 None:intergenic
TATTCAGATTTGATAGAGAT+TGG 0.391995 1_2:+48380173 Msa0074140:intron
TTCTTAAAGGTTCAAAAGAA+TGG 0.393543 1_2:+48380380 Msa0074140:CDS
GATAAATGTTAATAAGTTAG+TGG 0.394238 1_2:+48387345 Msa0074140:three_prime_UTR
TTGACAACTTGTGTTATGTT+TGG 0.396112 1_2:+48379805 Msa0074140:five_prime_UTR
TGCACATGGCCGTTTGTATC+CGG 0.400201 1_2:-48381798 None:intergenic
TGACATACCCTGCAGGTAGA+AGG 0.407875 1_2:-48381034 None:intergenic
GGATGAATAGCTTTGCGCTT+AGG 0.413895 1_2:-48380431 None:intergenic
CCACTAGCAATTTGTTGACT+TGG 0.414790 1_2:+48387055 Msa0074140:exon
TAACACTTCTACAGTTAGAT+TGG 0.418283 1_2:+48387144 Msa0074140:intron
ACTAGTGGTGGAGATGCTTC+TGG 0.418390 1_2:+48379975 Msa0074140:CDS
GCTGAAGTTTACGGTTTCAT+TGG 0.426347 1_2:+48381762 Msa0074140:CDS
GATGAACTCAACAATCTTCA+AGG 0.432102 1_2:+48381095 Msa0074140:CDS
TTAGCTGACATTGGATCAAA+GGG 0.440291 1_2:+48381254 Msa0074140:intron
TGTGCAGAAGCTGAAGGAAA+TGG 0.443024 1_2:+48381815 Msa0074140:CDS
TGTGTTGGTATTTGAGAAGT+AGG 0.447932 1_2:-48381326 None:intergenic
ATAATAGAAACTAACTAATT+GGG 0.448680 1_2:-48379876 None:intergenic
ACACAAAATCCCGTGATTCA+TGG 0.453178 1_2:+48381353 Msa0074140:CDS
CTACGGTGATTCTGATGAAT+GGG 0.456757 1_2:+48379710 Msa0074140:five_prime_UTR
TAGAATTAGAGTTCATGGTT+TGG 0.460644 1_2:-48379920 None:intergenic
ACACTCTCATGCCTAACTTC+TGG 0.465700 1_2:-48387201 None:intergenic
TGACAACTTGTGTTATGTTT+GGG 0.466397 1_2:+48379806 Msa0074140:five_prime_UTR
TTTACTGATTTAGCTGACAT+TGG 0.472761 1_2:+48381245 Msa0074140:intron
TTTCCTTCAGCTTCTGCACA+TGG 0.485443 1_2:-48381812 None:intergenic
ACTACGGTGATTCTGATGAA+TGG 0.486932 1_2:+48379709 Msa0074140:five_prime_UTR
AACAATCTTCAAGGAAATGA+AGG 0.487995 1_2:+48381104 Msa0074140:CDS
TTGCGCTTAGGACGAGGAGG+AGG 0.489119 1_2:-48380419 None:intergenic
ATCAGCAACAGCGGTCTTAG+TGG 0.492479 1_2:+48381278 Msa0074140:CDS
GAACTCTAATTCTAACTCAA+TGG 0.493422 1_2:+48379929 Msa0074140:CDS
GCAAATACCCTTCTACCTGC+AGG 0.497509 1_2:+48381026 Msa0074140:CDS
CATGCTGATGAATACTTGTC+AGG 0.511561 1_2:+48381073 Msa0074140:CDS
AAATTGAATTATGAAATGTT+CGG 0.517235 1_2:+48379768 Msa0074140:five_prime_UTR
GTGTTGGTATTTGAGAAGTA+GGG 0.528190 1_2:-48381325 None:intergenic
TTTAGCTGACATTGGATCAA+AGG 0.530841 1_2:+48381253 Msa0074140:intron
TGTGTTATGTTTGGGACAGT+TGG 0.530997 1_2:+48379814 Msa0074140:five_prime_UTR
CCGTAAACTTCAGCAAAGTC+CGG 0.533484 1_2:-48381753 None:intergenic
AGACCAGCTTTCTCTTGACT+TGG 0.533707 1_2:-48380027 None:intergenic
TTCAAAGTCGGTAACTCGGT+TGG 0.537616 1_2:-48387436 None:intergenic
ATGACAACAGTTACATTCAC+CGG 0.538240 1_2:-48387250 None:intergenic
AGAAACTAACTAATTGGGTA+TGG 0.541243 1_2:-48379871 None:intergenic
TGGAGATGCTTCTGGTAAGA+AGG 0.544373 1_2:+48379983 Msa0074140:CDS
TACTATGACTATTCTTGCTG+TGG 0.551136 1_2:-48387279 None:intergenic
TACCTGCAGGGTATGTCACG+TGG 0.562293 1_2:+48381039 Msa0074140:CDS
ATAGCTTTGCGCTTAGGACG+AGG 0.563263 1_2:-48380425 None:intergenic
ACAGTTAGATTGGTCAAACA+TGG 0.583368 1_2:+48387154 Msa0074140:intron
GACATACCCTGCAGGTAGAA+GGG 0.588018 1_2:-48381033 None:intergenic
GGACAGTATTATTCTGTCTG+TGG 0.589210 1_2:+48379679 Msa0074140:five_prime_UTR
TTACCAAGTCAAGAGAAAGC+TGG 0.591540 1_2:+48380024 Msa0074140:CDS
TGCCGAAGAGCCAAAAGCAA+TGG 0.592704 1_2:-48381006 None:intergenic
ATTGTTCAAAGTCGGTAACT+CGG 0.595384 1_2:-48387440 None:intergenic
GACAGTATTATTCTGTCTGT+GGG 0.596269 1_2:+48379680 Msa0074140:five_prime_UTR
TTAGATTGGTCAAACATGGA+TGG 0.596610 1_2:+48387158 Msa0074140:three_prime_UTR
TCAGCTGTAAAGTGTAAAGC+CGG 0.596664 1_2:+48387231 Msa0074140:three_prime_UTR
CAATAGCTATTGTTCAAAGT+CGG 0.599476 1_2:-48387448 None:intergenic
ACAACTACAACAACTAGTGG+TGG 0.601385 1_2:+48379963 Msa0074140:CDS
TGCAGTGATAACTATAGTGA+TGG 0.603706 1_2:-48379842 None:intergenic
CAAATACCCTTCTACCTGCA+GGG 0.604923 1_2:+48381027 Msa0074140:CDS
TGTCTGTGGGCACAACACTA+CGG 0.612371 1_2:+48379693 Msa0074140:five_prime_UTR
CGGCCATGTGCAGAAGCTGA+AGG 0.613903 1_2:+48381809 Msa0074140:CDS
AAATTGCTAGTGGTCAGTAG+TGG 0.620002 1_2:-48387045 None:intergenic
AGTTTCTATTATGTTCTCTG+TGG 0.620410 1_2:+48379887 Msa0074140:exon
TGCGCTTAGGACGAGGAGGA+GGG 0.622142 1_2:-48380418 None:intergenic
ACCTGCAGGGTATGTCACGT+GGG 0.625418 1_2:+48381040 Msa0074140:CDS
CAGACGATTACCATGAATCA+CGG 0.628602 1_2:-48381363 None:intergenic
AGACGATTACCATGAATCAC+GGG 0.628967 1_2:-48381362 None:intergenic
TCCCACGTGACATACCCTGC+AGG 0.633438 1_2:-48381041 None:intergenic
CTGACAAGTATTCATCAGCA+TGG 0.637093 1_2:-48381072 None:intergenic
ACAACAACTACAACAACTAG+TGG 0.647197 1_2:+48379960 Msa0074140:CDS
GGCTAGACAAGTTGACAGTG+AGG 0.653452 1_2:-48385070 None:intergenic
AAAGTGTGACTTTACACATG+TGG 0.657504 1_2:-48387608 None:intergenic
ACTTCTCAAATACCAACACA+AGG 0.657953 1_2:+48381329 Msa0074140:CDS
CCAAGTCAACAAATTGCTAG+TGG 0.669585 1_2:-48387055 None:intergenic
TCAAAGGGGATCAGCAACAG+CGG 0.674075 1_2:+48381269 Msa0074140:CDS
GTGTTGAAGATACTAATACA+AGG 0.674684 1_2:+48381300 Msa0074140:CDS
GCTTTGCGCTTAGGACGAGG+AGG 0.703477 1_2:-48380422 None:intergenic
CTTCTCAAATACCAACACAA+GGG 0.709558 1_2:+48381330 Msa0074140:CDS
CAAACATGGATGGAAGACTG+AGG 0.737564 1_2:+48387168 Msa0074140:three_prime_UTR
TAGCTGACATTGGATCAAAG+GGG 0.749798 1_2:+48381255 Msa0074140:intron
TGTGGTGTATATGAAACGTG+AGG 0.781020 1_2:+48379658 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATGAATAAATTAAATAAG+AGG + chr1_2:48385300-48385319 Msa0074140:intron 10.0%
!! CTAATTATATTTAATATTCA+AGG - chr1_2:48386911-48386930 None:intergenic 10.0%
!!! AATTTTCTGTATAATATTTT+AGG + chr1_2:48387697-48387716 Msa0074140:three_prime_UTR 10.0%
!! AAATTGAATTATGAAATGTT+CGG + chr1_2:48379768-48379787 Msa0074140:five_prime_UTR 15.0%
!! ATAATAGAAACTAACTAATT+GGG - chr1_2:48379879-48379898 None:intergenic 15.0%
!! ATATATTTGAAAACAAATTG+TGG + chr1_2:48380640-48380659 Msa0074140:intron 15.0%
!! GTTTATATTATATGATACTA+CGG - chr1_2:48381451-48381470 None:intergenic 15.0%
!!! ATTTTTAATGATTCAATTTG+CGG - chr1_2:48382474-48382493 None:intergenic 15.0%
!! AAATTGAATCATTAAAAATG+CGG + chr1_2:48382475-48382494 Msa0074140:intron 15.0%
!! CTTATTAATTATGAGTTTAT+CGG - chr1_2:48383524-48383543 None:intergenic 15.0%
!!! TTTAGTTTTTCAAGTAATTA+GGG - chr1_2:48385460-48385479 None:intergenic 15.0%
!!! TTTTAGTTTTTCAAGTAATT+AGG - chr1_2:48385461-48385480 None:intergenic 15.0%
!!! GAAAAACTAAAATAGTTTTT+AGG + chr1_2:48385469-48385488 Msa0074140:intron 15.0%
!! CATAATAGAAACTAACTAAT+TGG - chr1_2:48379880-48379899 None:intergenic 20.0%
!! AAAGAATGATATAAGATTGA+AGG - chr1_2:48380108-48380127 None:intergenic 20.0%
!! AAAAAAAAAGAGTAAAGACA+TGG - chr1_2:48380254-48380273 None:intergenic 20.0%
!!! AACCTTTAAGAAGTATTTTT+GGG - chr1_2:48380372-48380391 None:intergenic 20.0%
!!! TTTTCTTTTCTCTTTTTACT+TGG + chr1_2:48380497-48380516 Msa0074140:intron 20.0%
!! AATATATACATCGAAAATTG+TGG - chr1_2:48380627-48380646 None:intergenic 20.0%
!!! TATTTTGACACAAATTTAAC+TGG - chr1_2:48380898-48380917 None:intergenic 20.0%
!!! ACAAAAAGTAGCAATTTTTA+AGG - chr1_2:48380953-48380972 None:intergenic 20.0%
!! TCATATAACATAATAAGTAG+TGG - chr1_2:48381224-48381243 None:intergenic 20.0%
!!! TTAAGTTTTGAAACAATACT+CGG + chr1_2:48381403-48381422 Msa0074140:intron 20.0%
!!! TTAAAATACAACAGTTTTCA+AGG + chr1_2:48383714-48383733 Msa0074140:intron 20.0%
!!! TATCATAAGTTTTCTCAAAA+TGG - chr1_2:48383838-48383857 None:intergenic 20.0%
!! ATAGCTTAACATTGAATAAT+AGG + chr1_2:48384051-48384070 Msa0074140:intron 20.0%
!! TAGCTTAACATTGAATAATA+GGG + chr1_2:48384052-48384071 Msa0074140:intron 20.0%
!! ATCAAATTAACCTCTAATAT+TGG - chr1_2:48384233-48384252 None:intergenic 20.0%
!!! ATATTAGAGGTTAATTTGAT+AGG + chr1_2:48384233-48384252 Msa0074140:intron 20.0%
!!! TATTAGAGGTTAATTTGATA+GGG + chr1_2:48384234-48384253 Msa0074140:intron 20.0%
!!! ACATGTTAATTTTACTCTTT+TGG + chr1_2:48384359-48384378 Msa0074140:intron 20.0%
!!! CATGTTAATTTTACTCTTTT+GGG + chr1_2:48384360-48384379 Msa0074140:intron 20.0%
!! AAGCTATATATTTACACTAA+AGG + chr1_2:48384405-48384424 Msa0074140:intron 20.0%
!! GAAATTATTATTCACTAATG+TGG + chr1_2:48384528-48384547 Msa0074140:intron 20.0%
!! TTGATATTGAAACTTACAAT+GGG - chr1_2:48385107-48385126 None:intergenic 20.0%
!! ATTGATATTGAAACTTACAA+TGG - chr1_2:48385108-48385127 None:intergenic 20.0%
!!! TATATAGTTTTGTAACATAC+TGG + chr1_2:48385140-48385159 Msa0074140:intron 20.0%
!! GAAAACAAAATAAACTTTCT+GGG - chr1_2:48385166-48385185 None:intergenic 20.0%
!! TGAAAACAAAATAAACTTTC+TGG - chr1_2:48385167-48385186 None:intergenic 20.0%
!! TTCATAAATATAGTGACTAT+GGG - chr1_2:48385287-48385306 None:intergenic 20.0%
!! ATTCATAAATATAGTGACTA+TGG - chr1_2:48385288-48385307 None:intergenic 20.0%
!!! TTAGTTTTTCAAGTAATTAG+GGG - chr1_2:48385459-48385478 None:intergenic 20.0%
!! GATAAATGTTAATAAGTTAG+TGG + chr1_2:48387345-48387364 Msa0074140:three_prime_UTR 20.0%
!!! TTTTTATGGCATAATGTTAA+TGG + chr1_2:48387526-48387545 Msa0074140:three_prime_UTR 20.0%
! TATTCAGATTTGATAGAGAT+TGG + chr1_2:48380173-48380192 Msa0074140:intron 25.0%
!! AAGAAGATTGAAGATTTTGT+TGG + chr1_2:48380196-48380215 Msa0074140:CDS 25.0%
!!! GAACCTTTAAGAAGTATTTT+TGG - chr1_2:48380373-48380392 None:intergenic 25.0%
! TTCTTAAAGGTTCAAAAGAA+TGG + chr1_2:48380380-48380399 Msa0074140:CDS 25.0%
! GATGAACAATATGTAAAACA+AGG + chr1_2:48380563-48380582 Msa0074140:intron 25.0%
! AATACAATTTGAGTGATCAA+GGG + chr1_2:48380712-48380731 Msa0074140:intron 25.0%
! GATGATTAACTCAGTTTAAA+TGG - chr1_2:48380851-48380870 None:intergenic 25.0%
!! TTAAGTTGTGAAACAATACT+AGG + chr1_2:48381549-48381568 Msa0074140:intron 25.0%
!!! TCATTTTGACGATATTTAAC+AGG + chr1_2:48381726-48381745 Msa0074140:intron 25.0%
! TCACAGTTTCAAAGTTTATA+GGG - chr1_2:48381842-48381861 None:intergenic 25.0%
! ACTTAGCTATATAATCAGAT+AGG + chr1_2:48381935-48381954 Msa0074140:intron 25.0%
! TTTCTCTTTATCCAATCAAA+AGG - chr1_2:48383130-48383149 None:intergenic 25.0%
! TGTCTTTGGATAATTCAAAT+TGG - chr1_2:48383257-48383276 None:intergenic 25.0%
! AGTTTATCGGAAGATAAATT+GGG - chr1_2:48383511-48383530 None:intergenic 25.0%
! ATGGTTTATTTGGATCATAA+AGG - chr1_2:48383678-48383697 None:intergenic 25.0%
!! CCTTTAAGAAATGGTTTATT+TGG - chr1_2:48383688-48383707 None:intergenic 25.0%
! CCAAATAAACCATTTCTTAA+AGG + chr1_2:48383685-48383704 Msa0074140:intron 25.0%
!! TAAGACTTTCCTTTAAGAAA+TGG - chr1_2:48383697-48383716 None:intergenic 25.0%
!! ACTTATGATAACCTTTTTGA+AGG + chr1_2:48383747-48383766 Msa0074140:intron 25.0%
! AGGACTTTATCATATCAAAT+TGG + chr1_2:48383790-48383809 Msa0074140:intron 25.0%
!!! TTTTCTCAAAATGGTTTTAG+TGG - chr1_2:48383829-48383848 None:intergenic 25.0%
!! ACTTATGATAACCTTTTTGA+AGG + chr1_2:48383747-48383766 Msa0074140:intron 25.0%
! AGGACTTTATCATATCAAAT+TGG + chr1_2:48383790-48383809 Msa0074140:intron 25.0%
! GAATGTTCTTTAACATTATC+AGG + chr1_2:48384021-48384040 Msa0074140:intron 25.0%
! ATAAGCTAATCAAAATGTCA+TGG + chr1_2:48384185-48384204 Msa0074140:intron 25.0%
! TAAGCTAATCAAAATGTCAT+GGG + chr1_2:48384186-48384205 Msa0074140:intron 25.0%
!! ATTAGAGGTTAATTTGATAG+GGG + chr1_2:48384235-48384254 Msa0074140:intron 25.0%
! ATTATGCGAATAATTAACTC+TGG + chr1_2:48384438-48384457 Msa0074140:intron 25.0%
!! GCTTTTTAGATGAAATTCAA+AGG - chr1_2:48384497-48384516 None:intergenic 25.0%
! AATTTCATCTAAAAAGCTTG+AGG + chr1_2:48384500-48384519 Msa0074140:intron 25.0%
! CTTCATCCTTTGATATTATA+AGG + chr1_2:48384591-48384610 Msa0074140:intron 25.0%
! GTTTGACCTTATAATATCAA+AGG - chr1_2:48384600-48384619 None:intergenic 25.0%
! ATCTTAAAAAACTACCTATG+AGG - chr1_2:48384642-48384661 None:intergenic 25.0%
! CATTATATGGGTGAATAAAT+TGG - chr1_2:48384856-48384875 None:intergenic 25.0%
! CAATTTATTCACCCATATAA+TGG + chr1_2:48384854-48384873 Msa0074140:intron 25.0%
! TTAACTAGGAAATCAAAATG+AGG + chr1_2:48384925-48384944 Msa0074140:intron 25.0%
! TTACAATGGGATCAAAATTA+GGG - chr1_2:48385094-48385113 None:intergenic 25.0%
!!! ATAGACCAACACTTATTTTT+TGG + chr1_2:48385835-48385854 Msa0074140:intron 25.0%
! TTTCAGCTTATTTCGAATTA+GGG - chr1_2:48385867-48385886 None:intergenic 25.0%
!! TTTTCAGCTTATTTCGAATT+AGG - chr1_2:48385868-48385887 None:intergenic 25.0%
! TCCCATTGAGAATTAAATTA+GGG + chr1_2:48385917-48385936 Msa0074140:intron 25.0%
!!! CATAGATTTCAATGGTTTTT+TGG - chr1_2:48386226-48386245 None:intergenic 25.0%
! CAAAAAACCATTGAAATCTA+TGG + chr1_2:48386224-48386243 Msa0074140:intron 25.0%
!!! TCTTTTCATTTTTACTTCTG+AGG - chr1_2:48386250-48386269 None:intergenic 25.0%
! AAAGGCAATGAAGAAATAAA+TGG + chr1_2:48386304-48386323 Msa0074140:intron 25.0%
! AAGAAATAAATGGAGAAGAA+GGG + chr1_2:48386314-48386333 Msa0074140:intron 25.0%
! TTCCTGTTAAGAAAATTTCT+TGG - chr1_2:48386651-48386670 None:intergenic 25.0%
! TAAAGAAGTTCTTATGAATG+AGG + chr1_2:48386860-48386879 Msa0074140:intron 25.0%
! ATTGTTATATTGCTCTGATT+TGG + chr1_2:48387467-48387486 Msa0074140:three_prime_UTR 25.0%
! AATGGTCTGTATCAAAAAAT+TGG + chr1_2:48387544-48387563 Msa0074140:three_prime_UTR 25.0%
! ATGGTCTGTATCAAAAAATT+GGG + chr1_2:48387545-48387564 Msa0074140:three_prime_UTR 25.0%
! GCTCAATAATCTAATGAAAA+AGG - chr1_2:48387650-48387669 None:intergenic 25.0%
!!! CTGTATAATATTTTAGGAGT+TGG + chr1_2:48387703-48387722 Msa0074140:three_prime_UTR 25.0%
! TCATTCATTCATCTTTTGCA+CGG - chr1_2:48379737-48379756 None:intergenic 30.0%
TTGACAACTTGTGTTATGTT+TGG + chr1_2:48379805-48379824 Msa0074140:five_prime_UTR 30.0%
TGACAACTTGTGTTATGTTT+GGG + chr1_2:48379806-48379825 Msa0074140:five_prime_UTR 30.0%
AGAAACTAACTAATTGGGTA+TGG - chr1_2:48379874-48379893 None:intergenic 30.0%
AGTTTCTATTATGTTCTCTG+TGG + chr1_2:48379887-48379906 Msa0074140:exon 30.0%
TAGAATTAGAGTTCATGGTT+TGG - chr1_2:48379923-48379942 None:intergenic 30.0%
TGAGTTAGAATTAGAGTTCA+TGG - chr1_2:48379928-48379947 None:intergenic 30.0%
GAACTCTAATTCTAACTCAA+TGG + chr1_2:48379929-48379948 Msa0074140:CDS 30.0%
GATATAAGATTGAAGGTAGA+TGG - chr1_2:48380101-48380120 None:intergenic 30.0%
TGCCCAAAAATACTTCTTAA+AGG + chr1_2:48380367-48380386 Msa0074140:CDS 30.0%
!!! TTTGTTGCTTTTTGTGGATA+AGG - chr1_2:48380455-48380474 None:intergenic 30.0%
!!! CCATTTTTTGTTGCTTTTTG+TGG - chr1_2:48380461-48380480 None:intergenic 30.0%
CCACAAAAAGCAACAAAAAA+TGG + chr1_2:48380458-48380477 Msa0074140:CDS 30.0%
ATCATGCATATTTAGACATC+TGG + chr1_2:48380672-48380691 Msa0074140:intron 30.0%
GAATACAATTTGAGTGATCA+AGG + chr1_2:48380711-48380730 Msa0074140:intron 30.0%
AATGGACGATTAATTACGTT+TGG - chr1_2:48380833-48380852 None:intergenic 30.0%
AACAAATTTCTACGGCAATT+TGG - chr1_2:48380873-48380892 None:intergenic 30.0%
AACTGGACAACAAATTTCTA+CGG - chr1_2:48380881-48380900 None:intergenic 30.0%
AACAATCTTCAAGGAAATGA+AGG + chr1_2:48381104-48381123 Msa0074140:CDS 30.0%
!! TTTACTGATTTAGCTGACAT+TGG + chr1_2:48381245-48381264 Msa0074140:intron 30.0%
GTGTTGAAGATACTAATACA+AGG + chr1_2:48381300-48381319 Msa0074140:CDS 30.0%
TGAGTTTATTGAAATCCTTG+AGG + chr1_2:48381474-48381493 Msa0074140:intron 30.0%
ATATAGAAAGTTGCATGCAT+AGG + chr1_2:48381578-48381597 Msa0074140:intron 30.0%
CTCACAGTTTCAAAGTTTAT+AGG - chr1_2:48381843-48381862 None:intergenic 30.0%
!! TGTTTGCTGTTATAACAGAT+GGG - chr1_2:48382147-48382166 None:intergenic 30.0%
!!! TGATATCGGTTGTTTTTTTC+TGG - chr1_2:48382186-48382205 None:intergenic 30.0%
!!! TTTTTTCTGTTTTTTGCTGC+TGG - chr1_2:48382225-48382244 None:intergenic 30.0%
CAAAAAACAGAAAAAACCTG+AGG + chr1_2:48382229-48382248 Msa0074140:intron 30.0%
TCCCAATGGACAAATAAATT+AGG + chr1_2:48382594-48382613 Msa0074140:intron 30.0%
GCCTAATTTATTTGTCCATT+GGG - chr1_2:48382598-48382617 None:intergenic 30.0%
TGCCTAATTTATTTGTCCAT+TGG - chr1_2:48382599-48382618 None:intergenic 30.0%
!! AAAGCCAAATTCACTTTTGA+GGG + chr1_2:48382766-48382785 Msa0074140:intron 30.0%
AATACCCTCAAAAGTGAATT+TGG - chr1_2:48382773-48382792 None:intergenic 30.0%
TTGGATAAAGAGAAAAGTCT+AGG + chr1_2:48383135-48383154 Msa0074140:intron 30.0%
!!! AAATATGAGTTTTTGGGATG+TGG - chr1_2:48383196-48383215 None:intergenic 30.0%
!! TTTGGTTTGTAAACCAAAAG+AGG - chr1_2:48383478-48383497 None:intergenic 30.0%
GAGTTTATCGGAAGATAAAT+TGG - chr1_2:48383512-48383531 None:intergenic 30.0%
CATAACTAGGAAAGTTTATG+AGG + chr1_2:48383561-48383580 Msa0074140:intron 30.0%
AAATATTACCCTCCTCAAAA+TGG - chr1_2:48383587-48383606 None:intergenic 30.0%
! TTATATCGCTTCAAGTTACT+AGG - chr1_2:48383617-48383636 None:intergenic 30.0%
ACTTTATTCTGCTATATGTG+TGG + chr1_2:48383650-48383669 Msa0074140:intron 30.0%
!!! GACATTCAAAATGGTTTTAG+TGG - chr1_2:48383930-48383949 None:intergenic 30.0%
AAAGCACATGACATTCAAAA+TGG - chr1_2:48383939-48383958 None:intergenic 30.0%
! TATGATAACTTGCCTCAATA+AGG + chr1_2:48384107-48384126 Msa0074140:intron 30.0%
! ATGATAACTTGCCTCAATAA+GGG + chr1_2:48384108-48384127 Msa0074140:intron 30.0%
! TTAGAGGTTAATTTGATAGG+GGG + chr1_2:48384236-48384255 Msa0074140:intron 30.0%
AAATTAACATGTGTTTCCCA+TGG - chr1_2:48384351-48384370 None:intergenic 30.0%
! TTAACTCTGGAGAAACTATT+AGG + chr1_2:48384451-48384470 Msa0074140:intron 30.0%
! CATTTTACAACTGTCTCTTA+GGG + chr1_2:48384560-48384579 Msa0074140:intron 30.0%
! ATTTTACAACTGTCTCTTAG+GGG + chr1_2:48384561-48384580 Msa0074140:intron 30.0%
!! TGTTTTAAGCCTCTTAACAT+GGG - chr1_2:48384793-48384812 None:intergenic 30.0%
!!! TTGTTTTAAGCCTCTTAACA+TGG - chr1_2:48384794-48384813 None:intergenic 30.0%
TATATTTGATGTTCTTGTGC+AGG + chr1_2:48385028-48385047 Msa0074140:intron 30.0%
CTTACAATGGGATCAAAATT+AGG - chr1_2:48385095-48385114 None:intergenic 30.0%
ATTCATTCCAAGTTTCATTC+TGG + chr1_2:48385202-48385221 Msa0074140:intron 30.0%
TTAGAAACCAGAATGAAACT+TGG - chr1_2:48385212-48385231 None:intergenic 30.0%
TAAACACGCATAACGTTTAT+AGG + chr1_2:48385496-48385515 Msa0074140:intron 30.0%
TTCTTGTGCATAACGTTTAT+AGG - chr1_2:48385573-48385592 None:intergenic 30.0%
!! AAGTGTTGGTCTATTACAAA+AGG - chr1_2:48385829-48385848 None:intergenic 30.0%
CTGATCCAAAAAATAAGTGT+TGG - chr1_2:48385843-48385862 None:intergenic 30.0%
GTCCCATTGAGAATTAAATT+AGG + chr1_2:48385916-48385935 Msa0074140:intron 30.0%
GCCCTAATTTAATTCTCAAT+GGG - chr1_2:48385921-48385940 None:intergenic 30.0%
AGCCCTAATTTAATTCTCAA+TGG - chr1_2:48385922-48385941 None:intergenic 30.0%
!!! TTTCAATGGTTTTTTGGAGT+TGG - chr1_2:48386220-48386239 None:intergenic 30.0%
GAAGAAATAAATGGAGAAGA+AGG + chr1_2:48386313-48386332 Msa0074140:intron 30.0%
AATCCCATTCTTGAGAATTA+GGG - chr1_2:48386577-48386596 None:intergenic 30.0%
TAATCCCATTCTTGAGAATT+AGG - chr1_2:48386578-48386597 None:intergenic 30.0%
! GTCCAAGAAATTTTCTTAAC+AGG + chr1_2:48386646-48386665 Msa0074140:intron 30.0%
AGCATCACTAACTCTATATT+CGG - chr1_2:48386831-48386850 None:intergenic 30.0%
TAACACTTCTACAGTTAGAT+TGG + chr1_2:48387144-48387163 Msa0074140:intron 30.0%
! GTTTTTCTTAACCAGAAGTT+AGG + chr1_2:48387190-48387209 Msa0074140:three_prime_UTR 30.0%
!!! AGTGGTTATGTTGATTTTCA+AGG + chr1_2:48387363-48387382 Msa0074140:three_prime_UTR 30.0%
!! GATTTTCAAGGTTCAAACTT+TGG + chr1_2:48387375-48387394 Msa0074140:three_prime_UTR 30.0%
CAATAGCTATTGTTCAAAGT+CGG - chr1_2:48387451-48387470 None:intergenic 30.0%
! AGTAGAGACACAGATTTTTA+TGG + chr1_2:48387512-48387531 Msa0074140:three_prime_UTR 30.0%
! AGCTCATTTTCATTATGAAG+AGG + chr1_2:48387667-48387686 Msa0074140:three_prime_UTR 30.0%
! GCTCATTTTCATTATGAAGA+GGG + chr1_2:48387668-48387687 Msa0074140:three_prime_UTR 30.0%
GACAGTATTATTCTGTCTGT+GGG + chr1_2:48379680-48379699 Msa0074140:five_prime_UTR 35.0%
TGCAGTGATAACTATAGTGA+TGG - chr1_2:48379845-48379864 None:intergenic 35.0%
CTAGTTGTTGTAGTTGTTGT+TGG - chr1_2:48379960-48379979 None:intergenic 35.0%
ACAACAACTACAACAACTAG+TGG + chr1_2:48379960-48379979 Msa0074140:CDS 35.0%
!! CTTGACTTGGTAATTGTGTA+AGG - chr1_2:48380017-48380036 None:intergenic 35.0%
!! TGGCTCTAAAACAGTTATTC+AGG + chr1_2:48380216-48380235 Msa0074140:CDS 35.0%
CGTTGAACACTTCAAAATTG+TGG + chr1_2:48380754-48380773 Msa0074140:intron 35.0%
CAAAATTGTGGCTAAGTACA+TGG + chr1_2:48380766-48380785 Msa0074140:intron 35.0%
!!! TTTGTGTCACTTACCAGTTT+TGG + chr1_2:48380968-48380987 Msa0074140:intron 35.0%
GATGAACTCAACAATCTTCA+AGG + chr1_2:48381095-48381114 Msa0074140:CDS 35.0%
GGTATGCATAATGCATGTTA+TGG + chr1_2:48381125-48381144 Msa0074140:intron 35.0%
TTGATGCCAATAGTCTAGAT+TGG + chr1_2:48381175-48381194 Msa0074140:intron 35.0%
TTTAGCTGACATTGGATCAA+AGG + chr1_2:48381253-48381272 Msa0074140:intron 35.0%
TTAGCTGACATTGGATCAAA+GGG + chr1_2:48381254-48381273 Msa0074140:intron 35.0%
! GTGTTGGTATTTGAGAAGTA+GGG - chr1_2:48381328-48381347 None:intergenic 35.0%
! TGTGTTGGTATTTGAGAAGT+AGG - chr1_2:48381329-48381348 None:intergenic 35.0%
ACTTCTCAAATACCAACACA+AGG + chr1_2:48381329-48381348 Msa0074140:CDS 35.0%
CTTCTCAAATACCAACACAA+GGG + chr1_2:48381330-48381349 Msa0074140:CDS 35.0%
GTTTATTGAAATCCTTGAGG+TGG + chr1_2:48381477-48381496 Msa0074140:intron 35.0%
CATGCAACTTTCTATATGTG+AGG - chr1_2:48381575-48381594 None:intergenic 35.0%
TGAGTTTATTGAAATCCTCG+AGG + chr1_2:48381624-48381643 Msa0074140:intron 35.0%
CAAAATGACAGACAAAACAG+TGG - chr1_2:48381714-48381733 None:intergenic 35.0%
ACGATATTTAACAGGTTTGC+CGG + chr1_2:48381734-48381753 Msa0074140:intron 35.0%
!!! CATTGGAAGTGTTTTTGATC+CGG + chr1_2:48381779-48381798 Msa0074140:CDS 35.0%
! GTTTTTGATCCGGATACAAA+CGG + chr1_2:48381789-48381808 Msa0074140:CDS 35.0%
!! CTGTTTGCTGTTATAACAGA+TGG - chr1_2:48382148-48382167 None:intergenic 35.0%
!!! GTTGTTTTTTTCTGGTTTGC+TGG - chr1_2:48382178-48382197 None:intergenic 35.0%
! GTTTGGTTTAAGAATGGTGT+TGG - chr1_2:48382377-48382396 None:intergenic 35.0%
TAATGATTCAATTTGCGGAG+TGG - chr1_2:48382469-48382488 None:intergenic 35.0%
AAGATTGCGTTATGTGTGAA+GGG - chr1_2:48382717-48382736 None:intergenic 35.0%
!! GAAAGCCAAATTCACTTTTG+AGG + chr1_2:48382765-48382784 Msa0074140:intron 35.0%
TCCTTGTATAAGAAGTTGGA+GGG - chr1_2:48382913-48382932 None:intergenic 35.0%
GAAGTCCTTGTATAAGAAGT+TGG - chr1_2:48382917-48382936 None:intergenic 35.0%
!! TTGGGAGAATGACTTGTTAA+GGG - chr1_2:48383028-48383047 None:intergenic 35.0%
!! TTTGGGAGAATGACTTGTTA+AGG - chr1_2:48383029-48383048 None:intergenic 35.0%
TCATTCTCCCAAACAAAAAG+AGG + chr1_2:48383036-48383055 Msa0074140:intron 35.0%
!! GAGATGTCCTCTTTTTGTTT+GGG - chr1_2:48383046-48383065 None:intergenic 35.0%
AATCAAAAGGAGGCTTATGT+GGG - chr1_2:48383117-48383136 None:intergenic 35.0%
CTCTTTATCCAATCAAAAGG+AGG - chr1_2:48383127-48383146 None:intergenic 35.0%
! TGGGGCAAATATGAGTTTTT+GGG - chr1_2:48383202-48383221 None:intergenic 35.0%
! ATGGGGCAAATATGAGTTTT+TGG - chr1_2:48383203-48383222 None:intergenic 35.0%
TTGATAGAAAAGTGGGGAAT+GGG - chr1_2:48383221-48383240 None:intergenic 35.0%
TCCGAACTTGATAGAAAAGT+GGG - chr1_2:48383228-48383247 None:intergenic 35.0%
TTCCGAACTTGATAGAAAAG+TGG - chr1_2:48383229-48383248 None:intergenic 35.0%
AGATAGGAATACTCTTTGGA+AGG - chr1_2:48383379-48383398 None:intergenic 35.0%
!! TCCAAAGAGTATTCCTATCT+TGG + chr1_2:48383379-48383398 Msa0074140:intron 35.0%
TCCAAGATAGGAATACTCTT+TGG - chr1_2:48383383-48383402 None:intergenic 35.0%
AATGGAGGTTAATCCAAGAT+AGG - chr1_2:48383395-48383414 None:intergenic 35.0%
TACTAGCGAAATGAAAATGG+AGG - chr1_2:48383410-48383429 None:intergenic 35.0%
GCTTACTAGCGAAATGAAAA+TGG - chr1_2:48383413-48383432 None:intergenic 35.0%
GTTTGTAAACCAAAAGAGGA+TGG - chr1_2:48383474-48383493 None:intergenic 35.0%
!! AAGTTTATGAGGCCATTTTG+AGG + chr1_2:48383572-48383591 Msa0074140:intron 35.0%
ATCGAGTCAGTCAAAAATAG+AGG + chr1_2:48383770-48383789 Msa0074140:intron 35.0%
ATCGAGTCAGTCAAAAATAG+AGG + chr1_2:48383770-48383789 Msa0074140:intron 35.0%
!!! CTTTTTTTCCTGCTTATTCG+AGG + chr1_2:48383955-48383974 Msa0074140:intron 35.0%
TAATCTAACCTCGAATAAGC+AGG - chr1_2:48383966-48383985 None:intergenic 35.0%
! GACTGACAGATTTCTGAAAA+TGG - chr1_2:48383999-48384018 None:intergenic 35.0%
CATTGAATAATAGGGCTGAA+TGG + chr1_2:48384060-48384079 Msa0074140:intron 35.0%
GCAAGTTATCATAAGCTACA+AGG - chr1_2:48384100-48384119 None:intergenic 35.0%
! ATATTGGCCTAGGAAAAAAC+AGG - chr1_2:48384217-48384236 None:intergenic 35.0%
! TTTTCCTAGGCCAATATTAG+AGG + chr1_2:48384220-48384239 Msa0074140:intron 35.0%
! TTAACCTCTAATATTGGCCT+AGG - chr1_2:48384227-48384246 None:intergenic 35.0%
! TAGAGGTTAATTTGATAGGG+GGG + chr1_2:48384237-48384256 Msa0074140:intron 35.0%
TAGTAGCATAGATCAAACTC+CGG + chr1_2:48384274-48384293 Msa0074140:intron 35.0%
!! ATGCTGAAGGAGTATTATGA+AGG - chr1_2:48384304-48384323 None:intergenic 35.0%
! GTATTCTAGTGGTTTGAGTT+GGG - chr1_2:48384327-48384346 None:intergenic 35.0%
TGTATTCTAGTGGTTTGAGT+TGG - chr1_2:48384328-48384347 None:intergenic 35.0%
AAACCACTAGAATACACCAT+GGG + chr1_2:48384332-48384351 Msa0074140:intron 35.0%
AGGCTCTTAAAGAGTCAATT+TGG - chr1_2:48384477-48384496 None:intergenic 35.0%
TCATCTAAAAAGCTTGAGGA+AGG + chr1_2:48384504-48384523 Msa0074140:intron 35.0%
CATCTAAAAAGCTTGAGGAA+GGG + chr1_2:48384505-48384524 Msa0074140:intron 35.0%
ATCTAAAAAGCTTGAGGAAG+GGG + chr1_2:48384506-48384525 Msa0074140:intron 35.0%
CCTAAGAGACAGTTGTAAAA+TGG - chr1_2:48384562-48384581 None:intergenic 35.0%
! CCATTTTACAACTGTCTCTT+AGG + chr1_2:48384559-48384578 Msa0074140:intron 35.0%
ACACTAATTCCCATGTTAAG+AGG + chr1_2:48384781-48384800 Msa0074140:intron 35.0%
TTGCTAAACTGTCTTCACTA+AGG + chr1_2:48384822-48384841 Msa0074140:intron 35.0%
TGCTAAACTGTCTTCACTAA+GGG + chr1_2:48384823-48384842 Msa0074140:intron 35.0%
ATATGAGATGCAGAAGAACA+GGG - chr1_2:48384880-48384899 None:intergenic 35.0%
AATATGAGATGCAGAAGAAC+AGG - chr1_2:48384881-48384900 None:intergenic 35.0%
CTAGTTAATGCAGAAAAGAG+GGG - chr1_2:48384913-48384932 None:intergenic 35.0%
CCTAGTTAATGCAGAAAAGA+GGG - chr1_2:48384914-48384933 None:intergenic 35.0%
TCCTAGTTAATGCAGAAAAG+AGG - chr1_2:48384915-48384934 None:intergenic 35.0%
ACTATGGGAAGACTTACATT+GGG - chr1_2:48385272-48385291 None:intergenic 35.0%
AGTGTTTAATCCCTTGACTA+TGG + chr1_2:48385323-48385342 Msa0074140:intron 35.0%
ATGCATGAACTTGAGAGATT+TGG - chr1_2:48385357-48385376 None:intergenic 35.0%
TATTACCTACCAATGCAATG+AGG - chr1_2:48385628-48385647 None:intergenic 35.0%
! TGCATTGGTAGGTAATATGT+AGG + chr1_2:48385631-48385650 Msa0074140:intron 35.0%
GTGAGTTGTCTTGAGATTTA+GGG + chr1_2:48385953-48385972 Msa0074140:intron 35.0%
GACATAGTAGATAACCTAGA+AGG + chr1_2:48386054-48386073 Msa0074140:intron 35.0%
AATTGGCTACAGCATACTTT+GGG - chr1_2:48386158-48386177 None:intergenic 35.0%
AAATTGGCTACAGCATACTT+TGG - chr1_2:48386159-48386178 None:intergenic 35.0%
TGCATGTTGATGCTGTAAAT+TGG - chr1_2:48386175-48386194 None:intergenic 35.0%
AAATAAATGGAGAAGAAGGG+AGG + chr1_2:48386317-48386336 Msa0074140:intron 35.0%
AATAAATGGAGAAGAAGGGA+GGG + chr1_2:48386318-48386337 Msa0074140:intron 35.0%
GTGAGTTGTCTTGAGAATTA+GGG - chr1_2:48386541-48386560 None:intergenic 35.0%
ATTCGCTAGTCATGATAAGT+AGG - chr1_2:48386767-48386786 None:intergenic 35.0%
! ACAGTTAGATTGGTCAAACA+TGG + chr1_2:48387154-48387173 Msa0074140:intron 35.0%
! TTAGATTGGTCAAACATGGA+TGG + chr1_2:48387158-48387177 Msa0074140:three_prime_UTR 35.0%
ATGACAACAGTTACATTCAC+CGG - chr1_2:48387253-48387272 None:intergenic 35.0%
TACTATGACTATTCTTGCTG+TGG - chr1_2:48387282-48387301 None:intergenic 35.0%
ATTGTTCAAAGTCGGTAACT+CGG - chr1_2:48387443-48387462 None:intergenic 35.0%
CTTTACACATGTGGCATATT+TGG - chr1_2:48387602-48387621 None:intergenic 35.0%
AAAGTGTGACTTTACACATG+TGG - chr1_2:48387611-48387630 None:intergenic 35.0%
! TGTAAAGTCACACTTTTACC+TGG + chr1_2:48387615-48387634 Msa0074140:three_prime_UTR 35.0%
! GTAAAGTCACACTTTTACCT+GGG + chr1_2:48387616-48387635 Msa0074140:three_prime_UTR 35.0%
GGACAGTATTATTCTGTCTG+TGG + chr1_2:48379679-48379698 Msa0074140:five_prime_UTR 40.0%
ACTACGGTGATTCTGATGAA+TGG + chr1_2:48379709-48379728 Msa0074140:five_prime_UTR 40.0%
CTACGGTGATTCTGATGAAT+GGG + chr1_2:48379710-48379729 Msa0074140:five_prime_UTR 40.0%
! TGTGTTATGTTTGGGACAGT+TGG + chr1_2:48379814-48379833 Msa0074140:five_prime_UTR 40.0%
ACAACTACAACAACTAGTGG+TGG + chr1_2:48379963-48379982 Msa0074140:CDS 40.0%
TTACCAAGTCAAGAGAAAGC+TGG + chr1_2:48380024-48380043 Msa0074140:CDS 40.0%
!!! ATCCATTGCTTTTGGCTCTT+CGG + chr1_2:48381004-48381023 Msa0074140:CDS 40.0%
CTGACAAGTATTCATCAGCA+TGG - chr1_2:48381075-48381094 None:intergenic 40.0%
CATGCTGATGAATACTTGTC+AGG + chr1_2:48381073-48381092 Msa0074140:CDS 40.0%
AGCTAGCCAATCTAGACTAT+TGG - chr1_2:48381184-48381203 None:intergenic 40.0%
! GATTGGCTAGCTGAACTTAA+AGG + chr1_2:48381192-48381211 Msa0074140:intron 40.0%
TAGCTGACATTGGATCAAAG+GGG + chr1_2:48381255-48381274 Msa0074140:intron 40.0%
ACACAAAATCCCGTGATTCA+TGG + chr1_2:48381353-48381372 Msa0074140:CDS 40.0%
AGACGATTACCATGAATCAC+GGG - chr1_2:48381365-48381384 None:intergenic 40.0%
CAGACGATTACCATGAATCA+CGG - chr1_2:48381366-48381385 None:intergenic 40.0%
GAAACAACTTTCTAGATGCG+AGG - chr1_2:48381429-48381448 None:intergenic 40.0%
! CAAGATCATTTTCCACCTCA+AGG - chr1_2:48381492-48381511 None:intergenic 40.0%
GTTTATTGAAATCCTCGAGG+TGG + chr1_2:48381627-48381646 Msa0074140:intron 40.0%
GCTGAAGTTTACGGTTTCAT+TGG + chr1_2:48381762-48381781 Msa0074140:CDS 40.0%
CTCAGTAGTTACTTCTGTTG+AGG - chr1_2:48381910-48381929 None:intergenic 40.0%
GAGACAAAACAAGAACCTAC+AGG + chr1_2:48381992-48382011 Msa0074140:intron 40.0%
GAGTTTATCATGCAACCTGT+AGG - chr1_2:48382010-48382029 None:intergenic 40.0%
CAGCAGGGAACAATTACATA+AGG + chr1_2:48382104-48382123 Msa0074140:intron 40.0%
! TGTTATAACAGATGGGCTTC+TGG - chr1_2:48382140-48382159 None:intergenic 40.0%
GGTCTCTTTCTGTCTGATAT+CGG - chr1_2:48382200-48382219 None:intergenic 40.0%
AAACAGAAAAAACCTGAGGC+TGG + chr1_2:48382233-48382252 Msa0074140:intron 40.0%
!!! CTGTTTCCTGCTGTTTTTTG+CGG - chr1_2:48382270-48382289 None:intergenic 40.0%
! TTAATGGAGCTGCTTTGGTA+AGG - chr1_2:48382331-48382350 None:intergenic 40.0%
TACCAAAGCAGCTCCATTAA+CGG + chr1_2:48382331-48382350 Msa0074140:intron 40.0%
CATTCTTAAACCAAACACGC+CGG + chr1_2:48382381-48382400 Msa0074140:intron 40.0%
TGGATGTTGAGTCGTATGAA+GGG - chr1_2:48382408-48382427 None:intergenic 40.0%
ACAAATAAGAAGGTCCGCAT+CGG - chr1_2:48382555-48382574 None:intergenic 40.0%
! TATTTGTCCATTGGGAGTGT+TGG - chr1_2:48382590-48382609 None:intergenic 40.0%
CAAGATTGCGTTATGTGTGA+AGG - chr1_2:48382718-48382737 None:intergenic 40.0%
GAACTATATCAGAGGAGCAA+GGG - chr1_2:48382873-48382892 None:intergenic 40.0%
AGAACTATATCAGAGGAGCA+AGG - chr1_2:48382874-48382893 None:intergenic 40.0%
ACCCTCCAACTTCTTATACA+AGG + chr1_2:48382909-48382928 Msa0074140:intron 40.0%
GTCCTTGTATAAGAAGTTGG+AGG - chr1_2:48382914-48382933 None:intergenic 40.0%
CTTGTTAAGGGAGTTGTATG+CGG - chr1_2:48383016-48383035 None:intergenic 40.0%
! GGAGATGTCCTCTTTTTGTT+TGG - chr1_2:48383047-48383066 None:intergenic 40.0%
!! AGTGCAATTGGTCGTTTTCT+TGG - chr1_2:48383068-48383087 None:intergenic 40.0%
TTAATACTCCGGAGTGCAAT+TGG - chr1_2:48383080-48383099 None:intergenic 40.0%
CAATCAAAAGGAGGCTTATG+TGG - chr1_2:48383118-48383137 None:intergenic 40.0%
! CACATAAGCCTCCTTTTGAT+TGG + chr1_2:48383116-48383135 Msa0074140:intron 40.0%
TGATAGAAAAGTGGGGAATG+GGG - chr1_2:48383220-48383239 None:intergenic 40.0%
CTTGATAGAAAAGTGGGGAA+TGG - chr1_2:48383222-48383241 None:intergenic 40.0%
CCGAACTTGATAGAAAAGTG+GGG - chr1_2:48383227-48383246 None:intergenic 40.0%
!! CCCCACTTTTCTATCAAGTT+CGG + chr1_2:48383224-48383243 Msa0074140:intron 40.0%
AGTATGGTACCTCAAGTGTA+GGG - chr1_2:48383341-48383360 None:intergenic 40.0%
AAGTATGGTACCTCAAGTGT+AGG - chr1_2:48383342-48383361 None:intergenic 40.0%
! TAGGAATACTCTTTGGAAGG+AGG - chr1_2:48383376-48383395 None:intergenic 40.0%
! AAAAGAGGATGGTGGTTTAG+GGG - chr1_2:48383463-48383482 None:intergenic 40.0%
! CAAAAGAGGATGGTGGTTTA+GGG - chr1_2:48383464-48383483 None:intergenic 40.0%
TGTAAACCAAAAGAGGATGG+TGG - chr1_2:48383471-48383490 None:intergenic 40.0%
ATCGGAAGATAAATTGGGTG+AGG - chr1_2:48383506-48383525 None:intergenic 40.0%
TTTCCTAGTTATGTGTGCAG+AGG - chr1_2:48383554-48383573 None:intergenic 40.0%
!! TTTATGAGGCCATTTTGAGG+AGG + chr1_2:48383575-48383594 Msa0074140:intron 40.0%
!! TTATGAGGCCATTTTGAGGA+GGG + chr1_2:48383576-48383595 Msa0074140:intron 40.0%
!! ACTGACTCGATCCTTCAAAA+AGG - chr1_2:48383761-48383780 None:intergenic 40.0%
!! ACTGACTCGATCCTTCAAAA+AGG - chr1_2:48383761-48383780 None:intergenic 40.0%
TCATATTCACGCCCTTATTG+AGG - chr1_2:48384122-48384141 None:intergenic 40.0%
CTTATCTTGCTTCAACACAC+TGG - chr1_2:48384155-48384174 None:intergenic 40.0%
! AGAGGTTAATTTGATAGGGG+GGG + chr1_2:48384238-48384257 Msa0074140:intron 40.0%
!! CTGAAGGAGTATTATGAAGG+AGG - chr1_2:48384301-48384320 None:intergenic 40.0%
CAAACCACTAGAATACACCA+TGG + chr1_2:48384331-48384350 Msa0074140:intron 40.0%
TTTCCCATGGTGTATTCTAG+TGG - chr1_2:48384338-48384357 None:intergenic 40.0%
AAAAACTACCTATGAGGCGT+CGG - chr1_2:48384636-48384655 None:intergenic 40.0%
AGTGAAGACAGTTTAGCAAG+TGG - chr1_2:48384821-48384840 None:intergenic 40.0%
GAAGAACAGGGCCATTATAT+GGG - chr1_2:48384868-48384887 None:intergenic 40.0%
AGAAGAACAGGGCCATTATA+TGG - chr1_2:48384869-48384888 None:intergenic 40.0%
TTAATGCAGAAAAGAGGGGA+GGG - chr1_2:48384909-48384928 None:intergenic 40.0%
! CCCTCTTTTCTGCATTAACT+AGG + chr1_2:48384911-48384930 Msa0074140:intron 40.0%
GACTATGGGAAGACTTACAT+TGG - chr1_2:48385273-48385292 None:intergenic 40.0%
GCAAGTCACAAGTTAATGCA+GGG - chr1_2:48385411-48385430 None:intergenic 40.0%
AGCAAGTCACAAGTTAATGC+AGG - chr1_2:48385412-48385431 None:intergenic 40.0%
TTCAAGTAATTAGGGGCTTG+AGG - chr1_2:48385452-48385471 None:intergenic 40.0%
CAGCAACTAGATTCAAACTC+AGG - chr1_2:48385596-48385615 None:intergenic 40.0%
GAGTTTGAATCTAGTTGCTG+AGG + chr1_2:48385596-48385615 Msa0074140:intron 40.0%
AGCTCAGAGAGAACTTATAG+AGG - chr1_2:48385659-48385678 None:intergenic 40.0%
TAAGTTCTCTCTGAGCTTTG+AGG + chr1_2:48385662-48385681 Msa0074140:intron 40.0%
AAATGTTAGCCGTCAACACT+CGG + chr1_2:48385885-48385904 Msa0074140:intron 40.0%
AAATTAGGGCTAATCTGACC+TGG + chr1_2:48385931-48385950 Msa0074140:intron 40.0%
AAATCTCAAGACAACTCACC+AGG - chr1_2:48385952-48385971 None:intergenic 40.0%
GGTGAGTTGTCTTGAGATTT+AGG + chr1_2:48385952-48385971 Msa0074140:intron 40.0%
! GTGGGTTGTCTTGAGAATTA+GGG + chr1_2:48385989-48386008 Msa0074140:intron 40.0%
GCGGCACAAAAAAATAAACG+AGG - chr1_2:48386117-48386136 None:intergenic 40.0%
!!! TTTTGGAGTTGGAGGCAAAT+TGG - chr1_2:48386209-48386228 None:intergenic 40.0%
!!! CAATGGTTTTTTGGAGTTGG+AGG - chr1_2:48386217-48386236 None:intergenic 40.0%
! TCTGAGGCCATAGATTTCAA+TGG - chr1_2:48386234-48386253 None:intergenic 40.0%
AGTGTCATGTTGCTGCTAAA+GGG - chr1_2:48386278-48386297 None:intergenic 40.0%
CAACATGACACTCTTGAGAA+AGG + chr1_2:48386286-48386305 Msa0074140:intron 40.0%
CCTAATTGTAATCGAGGTCT+TGG - chr1_2:48386360-48386379 None:intergenic 40.0%
CCAAGACCTCGATTACAATT+AGG + chr1_2:48386357-48386376 Msa0074140:intron 40.0%
CTTCTGCCTAATTGTAATCG+AGG - chr1_2:48386366-48386385 None:intergenic 40.0%
GACACAGTAGATAACCTAGA+AGG - chr1_2:48386440-48386459 None:intergenic 40.0%
! GTGGGTTGTCTTGAGAATTA+GGG - chr1_2:48385989-48386008 None:intergenic 40.0%
GGTGAGTTGTCTTGAGAATT+AGG - chr1_2:48386542-48386561 None:intergenic 40.0%
AATTCTCAAGACAACTCACC+AGG + chr1_2:48386542-48386561 Msa0074140:intron 40.0%
TCAGCCCTAATTCTCAAGAA+TGG + chr1_2:48386570-48386589 Msa0074140:intron 40.0%
CAGCCCTAATTCTCAAGAAT+GGG + chr1_2:48386571-48386590 Msa0074140:intron 40.0%
GGATTAAATCCACTGAGTGT+TGG + chr1_2:48386592-48386611 Msa0074140:intron 40.0%
AGAAAAGAATCCCTTCCACT+GGG + chr1_2:48386623-48386642 Msa0074140:intron 40.0%
CTAGTCATCTGCTTCAATCT+CGG + chr1_2:48386798-48386817 Msa0074140:intron 40.0%
TTGCTTCGTTGTTCAGAAGA+AGG + chr1_2:48386941-48386960 Msa0074140:intron 40.0%
AAATTGCTAGTGGTCAGTAG+TGG - chr1_2:48387048-48387067 None:intergenic 40.0%
CCAAGTCAACAAATTGCTAG+TGG - chr1_2:48387058-48387077 None:intergenic 40.0%
!! CCACTAGCAATTTGTTGACT+TGG + chr1_2:48387055-48387074 Msa0074140:exon 40.0%
TCAGCTGTAAAGTGTAAAGC+CGG + chr1_2:48387231-48387250 Msa0074140:three_prime_UTR 40.0%
TGGAGATGCTTCTGGTAAGA+AGG + chr1_2:48379983-48380002 Msa0074140:CDS 45.0%
AGACCAGCTTTCTCTTGACT+TGG - chr1_2:48380030-48380049 None:intergenic 45.0%
! GGATGAATAGCTTTGCGCTT+AGG - chr1_2:48380434-48380453 None:intergenic 45.0%
AAAGCAATGGATGCTGGTAG+TGG - chr1_2:48380996-48381015 None:intergenic 45.0%
! CTACCAGCATCCATTGCTTT+TGG + chr1_2:48380996-48381015 Msa0074140:intron 45.0%
CAAATACCCTTCTACCTGCA+GGG + chr1_2:48381027-48381046 Msa0074140:CDS 45.0%
! GGATTTTGTGTCCCTTGTGT+TGG - chr1_2:48381344-48381363 None:intergenic 45.0%
CCGTAAACTTCAGCAAAGTC+CGG - chr1_2:48381756-48381775 None:intergenic 45.0%
CCGGACTTTGCTGAAGTTTA+CGG + chr1_2:48381753-48381772 Msa0074140:CDS 45.0%
TTTCCTTCAGCTTCTGCACA+TGG - chr1_2:48381815-48381834 None:intergenic 45.0%
TGTGCAGAAGCTGAAGGAAA+TGG + chr1_2:48381815-48381834 Msa0074140:CDS 45.0%
AACAAAAACTCGCGATCAGC+AGG + chr1_2:48382088-48382107 Msa0074140:intron 45.0%
ACAAAAACTCGCGATCAGCA+GGG + chr1_2:48382089-48382108 Msa0074140:intron 45.0%
!!! TTCTGTTTTTTGCTGCTGGC+TGG - chr1_2:48382221-48382240 None:intergenic 45.0%
ACAGAACCGCAAAAAACAGC+AGG + chr1_2:48382261-48382280 Msa0074140:intron 45.0%
ATCCGTTAATGGAGCTGCTT+TGG - chr1_2:48382336-48382355 None:intergenic 45.0%
! AGCAGCTCCATTAACGGATA+AGG + chr1_2:48382337-48382356 Msa0074140:intron 45.0%
! CGGCGTGTTTGGTTTAAGAA+TGG - chr1_2:48382383-48382402 None:intergenic 45.0%
GGATGTTGAGTCGTATGAAG+GGG - chr1_2:48382407-48382426 None:intergenic 45.0%
GTGGATGTTGAGTCGTATGA+AGG - chr1_2:48382409-48382428 None:intergenic 45.0%
TGATTCAATTTGCGGAGTGG+CGG - chr1_2:48382466-48382485 None:intergenic 45.0%
AAATCAACCGGTAACCGATG+CGG + chr1_2:48382538-48382557 Msa0074140:intron 45.0%
TGGGGCTGAGACAAATAAGA+AGG - chr1_2:48382565-48382584 None:intergenic 45.0%
!! TCCATTGGGAGTGTTGGATT+GGG - chr1_2:48382584-48382603 None:intergenic 45.0%
ATTCACTGTGTTTGCTTCCG+AGG - chr1_2:48382667-48382686 None:intergenic 45.0%
GTGTGAAGGGATGTTGGAAT+CGG - chr1_2:48382704-48382723 None:intergenic 45.0%
CGTTATGTGTGAAGGGATGT+TGG - chr1_2:48382710-48382729 None:intergenic 45.0%
TCTATCACGAAGAAGCTTCC+AGG + chr1_2:48382792-48382811 Msa0074140:intron 45.0%
! GAGAGCGCAACAACTTTAGA+CGG + chr1_2:48382814-48382833 Msa0074140:intron 45.0%
TTCCTCCATTTGGAAAAGCC+CGG - chr1_2:48382842-48382861 None:intergenic 45.0%
TATATCAGAGGAGCAAGGGA+GGG - chr1_2:48382869-48382888 None:intergenic 45.0%
AGAGGCGAGAACTATATCAG+AGG - chr1_2:48382881-48382900 None:intergenic 45.0%
! GTTGGAGGGTATAATGCTAG+AGG - chr1_2:48382899-48382918 None:intergenic 45.0%
!!! GGAAGAGAGTGGTGCTTTTT+TGG - chr1_2:48382941-48382960 None:intergenic 45.0%
!! CGGATTTGGAAGGCTTTAGA+GGG - chr1_2:48382996-48383015 None:intergenic 45.0%
GAGTTGTATGCGGATTTGGA+AGG - chr1_2:48383006-48383025 None:intergenic 45.0%
AAGGGAGTTGTATGCGGATT+TGG - chr1_2:48383010-48383029 None:intergenic 45.0%
GAAAACGACCAATTGCACTC+CGG + chr1_2:48383069-48383088 Msa0074140:intron 45.0%
CTTGGGGACTCTTAATACTC+CGG - chr1_2:48383091-48383110 None:intergenic 45.0%
!!! TGAGTTTTTGGGATGTGGCT+TGG - chr1_2:48383191-48383210 None:intergenic 45.0%
TGGAGGTTGAGGATTACACT+TGG - chr1_2:48383314-48383333 None:intergenic 45.0%
GTATGGTACCTCAAGTGTAG+GGG - chr1_2:48383340-48383359 None:intergenic 45.0%
! TACTCTTTGGAAGGAGGTGT+TGG - chr1_2:48383370-48383389 None:intergenic 45.0%
! CCAAAAGAGGATGGTGGTTT+AGG - chr1_2:48383465-48383484 None:intergenic 45.0%
! CCTAAACCACCATCCTCTTT+TGG + chr1_2:48383462-48383481 Msa0074140:intron 45.0%
AAATTGGGTGAGGTGGAGTT+TGG - chr1_2:48383496-48383515 None:intergenic 45.0%
GGAAGATAAATTGGGTGAGG+TGG - chr1_2:48383503-48383522 None:intergenic 45.0%
CTTCCTCTGCACACATAACT+AGG + chr1_2:48383548-48383567 Msa0074140:intron 45.0%
! GAGGTTAATTTGATAGGGGG+GGG + chr1_2:48384239-48384258 Msa0074140:intron 45.0%
! GGAGTATTATGAAGGAGGTC+CGG - chr1_2:48384296-48384315 None:intergenic 45.0%
GTTAATGCAGAAAAGAGGGG+AGG - chr1_2:48384910-48384929 None:intergenic 45.0%
GGATTCAGAGCCATAGTCAA+GGG - chr1_2:48385336-48385355 None:intergenic 45.0%
TGGATTCAGAGCCATAGTCA+AGG - chr1_2:48385337-48385356 None:intergenic 45.0%
TGAATCTAGTTGCTGAGGAG+AGG + chr1_2:48385601-48385620 Msa0074140:intron 45.0%
!! CTAAATCCACCGAGTGTTGA+CGG - chr1_2:48385897-48385916 None:intergenic 45.0%
! GATTTAGGGCTAATCTGACC+TGG + chr1_2:48385967-48385986 Msa0074140:intron 45.0%
AATTCTCAAGACAACCCACC+AGG - chr1_2:48386506-48386525 None:intergenic 45.0%
!! GGTGGGTTGTCTTGAGAATT+AGG + chr1_2:48385988-48386007 Msa0074140:intron 45.0%
GAATTAGGGCTAATCTGAGC+TGG + chr1_2:48386003-48386022 Msa0074140:intron 45.0%
AATCTGAGCTGGTTGTGTGA+TGG + chr1_2:48386014-48386033 Msa0074140:intron 45.0%
ATCTGAGCTGGTTGTGTGAT+GGG + chr1_2:48386015-48386034 Msa0074140:intron 45.0%
! TTGTGTGATGGGAGAGTCAT+GGG + chr1_2:48386026-48386045 Msa0074140:intron 45.0%
CCTTTCAAATTCGGCCTTCT+AGG - chr1_2:48386423-48386442 None:intergenic 45.0%
CCTAGAAGGCCGAATTTGAA+AGG + chr1_2:48386068-48386087 Msa0074140:intron 45.0%
! TGGGAGCCTATTGATTACAG+CGG - chr1_2:48386139-48386158 None:intergenic 45.0%
GAGTGTCATGTTGCTGCTAA+AGG - chr1_2:48386279-48386298 None:intergenic 45.0%
! ATTTGAAAGGCACGACGACA+TGG - chr1_2:48386413-48386432 None:intergenic 45.0%
GTCGTCGTGCCTTTCAAATT+CGG + chr1_2:48386414-48386433 Msa0074140:intron 45.0%
CCTAGAAGGCCGAATTTGAA+AGG - chr1_2:48386068-48386087 None:intergenic 45.0%
CCTTTCAAATTCGGCCTTCT+AGG + chr1_2:48386423-48386442 Msa0074140:intron 45.0%
! TTGTGTGATGGGAGAGTCAT+GGG - chr1_2:48386026-48386045 None:intergenic 45.0%
ATCTGAGCTGGTTGTGTGAT+GGG - chr1_2:48386015-48386034 None:intergenic 45.0%
AATCTGAGCTGGTTGTGTGA+TGG - chr1_2:48386014-48386033 None:intergenic 45.0%
GAATTAGGGCTAATCTGAGC+TGG - chr1_2:48386003-48386022 None:intergenic 45.0%
!! GGTGGGTTGTCTTGAGAATT+AGG - chr1_2:48385988-48386007 None:intergenic 45.0%
AATTCTCAAGACAACCCACC+AGG + chr1_2:48386506-48386525 Msa0074140:intron 45.0%
GAATTAGGGCTAATCTGACC+TGG - chr1_2:48386527-48386546 None:intergenic 45.0%
CAGAAAAGAATCCCTTCCAC+TGG + chr1_2:48386622-48386641 Msa0074140:intron 45.0%
GAAAAGAATCCCTTCCACTG+GGG + chr1_2:48386624-48386643 Msa0074140:intron 45.0%
GAAAATTTCTTGGACCCCAG+TGG - chr1_2:48386641-48386660 None:intergenic 45.0%
GGCAGAAGATCAAGAAACTG+AGG - chr1_2:48386746-48386765 None:intergenic 45.0%
TCTGCTTCAATCTCGGACTA+AGG + chr1_2:48386805-48386824 Msa0074140:intron 45.0%
CAAACATGGATGGAAGACTG+AGG + chr1_2:48387168-48387187 Msa0074140:three_prime_UTR 45.0%
ACACTCTCATGCCTAACTTC+TGG - chr1_2:48387204-48387223 None:intergenic 45.0%
TTCAAAGTCGGTAACTCGGT+TGG - chr1_2:48387439-48387458 None:intergenic 45.0%
TGAAAAAGGTCATTTCGCCC+AGG - chr1_2:48387636-48387655 None:intergenic 45.0%
!! TTTATTAAAGAATAATTTAA+TGG - chr1_2:48386691-48386710 None:intergenic 5.0%
!! TTAAATTATTCTTTAATAAA+AGG + chr1_2:48386691-48386710 Msa0074140:intron 5.0%
TGTCTGTGGGCACAACACTA+CGG + chr1_2:48379693-48379712 Msa0074140:five_prime_UTR 50.0%
! ACTAGTGGTGGAGATGCTTC+TGG + chr1_2:48379975-48379994 Msa0074140:CDS 50.0%
! ATAGCTTTGCGCTTAGGACG+AGG - chr1_2:48380428-48380447 None:intergenic 50.0%
GAGCCAAAAGCAATGGATGC+TGG - chr1_2:48381002-48381021 None:intergenic 50.0%
TGCCGAAGAGCCAAAAGCAA+TGG - chr1_2:48381009-48381028 None:intergenic 50.0%
GCAAATACCCTTCTACCTGC+AGG + chr1_2:48381026-48381045 Msa0074140:CDS 50.0%
GACATACCCTGCAGGTAGAA+GGG - chr1_2:48381036-48381055 None:intergenic 50.0%
TGACATACCCTGCAGGTAGA+AGG - chr1_2:48381037-48381056 None:intergenic 50.0%
TCAAAGGGGATCAGCAACAG+CGG + chr1_2:48381269-48381288 Msa0074140:CDS 50.0%
ATCAGCAACAGCGGTCTTAG+TGG + chr1_2:48381278-48381297 Msa0074140:CDS 50.0%
TCATGGTAATCGTCTGCGAC+AGG + chr1_2:48381370-48381389 Msa0074140:intron 50.0%
CAAGATCATTTGCCACCTCG+AGG - chr1_2:48381642-48381661 None:intergenic 50.0%
TGCACATGGCCGTTTGTATC+CGG - chr1_2:48381801-48381820 None:intergenic 50.0%
GTTCTGTATATGCCAGCCTC+AGG - chr1_2:48382248-48382267 None:intergenic 50.0%
! ATGGAGCTGCTTTGGTAAGG+CGG - chr1_2:48382328-48382347 None:intergenic 50.0%
!! GAGGGTGCCTTATCCGTTAA+TGG - chr1_2:48382347-48382366 None:intergenic 50.0%
! TAACGGATAAGGCACCCTCT+CGG + chr1_2:48382348-48382367 Msa0074140:intron 50.0%
!! AATGGTGTTGGTGTCCGAGA+GGG - chr1_2:48382365-48382384 None:intergenic 50.0%
!! TTCAGGTTTTGTCGTGGAGG+TGG - chr1_2:48382428-48382447 None:intergenic 50.0%
!! CGATTCAGGTTTTGTCGTGG+AGG - chr1_2:48382431-48382450 None:intergenic 50.0%
!! AGGCGATTCAGGTTTTGTCG+TGG - chr1_2:48382434-48382453 None:intergenic 50.0%
!! GCATCGGTTACCGGTTGATT+TGG - chr1_2:48382539-48382558 None:intergenic 50.0%
!! CCATTGGGAGTGTTGGATTG+GGG - chr1_2:48382583-48382602 None:intergenic 50.0%
!! GTCCATTGGGAGTGTTGGAT+TGG - chr1_2:48382585-48382604 None:intergenic 50.0%
GCAAGGATTGTTGAGGTGGA+TGG - chr1_2:48382640-48382659 None:intergenic 50.0%
TGTGGCAAGGATTGTTGAGG+TGG - chr1_2:48382644-48382663 None:intergenic 50.0%
AGGTGTGGCAAGGATTGTTG+AGG - chr1_2:48382647-48382666 None:intergenic 50.0%
CAACAATCCTTGCCACACCT+CGG + chr1_2:48382647-48382666 Msa0074140:intron 50.0%
ACGCAATCTTGAGAAGCCTC+TGG + chr1_2:48382727-48382746 Msa0074140:intron 50.0%
CAATCTTGAGAAGCCTCTGG+AGG + chr1_2:48382730-48382749 Msa0074140:intron 50.0%
CAGACATGTGTTACCTCCAG+AGG - chr1_2:48382746-48382765 None:intergenic 50.0%
CTAAAGTTGTTGCGCTCTCC+TGG - chr1_2:48382813-48382832 None:intergenic 50.0%
GCAACAACTTTAGACGGTGC+CGG + chr1_2:48382820-48382839 Msa0074140:intron 50.0%
CAACAACTTTAGACGGTGCC+GGG + chr1_2:48382821-48382840 Msa0074140:intron 50.0%
!!! GGAGGGTGTTTTCCTCCATT+TGG - chr1_2:48382852-48382871 None:intergenic 50.0%
CTATATCAGAGGAGCAAGGG+AGG - chr1_2:48382870-48382889 None:intergenic 50.0%
CGTTGGAAGTTGGAAGAGAG+TGG - chr1_2:48382952-48382971 None:intergenic 50.0%
! AGATGTGTGGCGTTGGAAGT+TGG - chr1_2:48382962-48382981 None:intergenic 50.0%
TAGACGAAGATGTGTGGCGT+TGG - chr1_2:48382969-48382988 None:intergenic 50.0%
GGTCTCTAGACGAAGATGTG+TGG - chr1_2:48382975-48382994 None:intergenic 50.0%
! GCGGATTTGGAAGGCTTTAG+AGG - chr1_2:48382997-48383016 None:intergenic 50.0%
AGGCTTATGTGGGTGACTTG+GGG - chr1_2:48383107-48383126 None:intergenic 50.0%
GAGGCTTATGTGGGTGACTT+GGG - chr1_2:48383108-48383127 None:intergenic 50.0%
!!! TTTTGGGATGTGGCTTGGAG+AGG - chr1_2:48383186-48383205 None:intergenic 50.0%
!! GTGGAGGGATTTGGTGTCTT+TGG - chr1_2:48383271-48383290 None:intergenic 50.0%
! TACCTCAAGTGTAGGGGTGT+TGG - chr1_2:48383334-48383353 None:intergenic 50.0%
!! GAGGTGTTGGTGGAGAAGTA+TGG - chr1_2:48383357-48383376 None:intergenic 50.0%
!! TCTTTGGAAGGAGGTGTTGG+TGG - chr1_2:48383367-48383386 None:intergenic 50.0%
!!! GGAAGCGCCTGTTTTTTCCT+AGG + chr1_2:48384207-48384226 Msa0074140:intron 50.0%
!! GGTTTGAGTTGGGATGCTGA+AGG - chr1_2:48384317-48384336 None:intergenic 50.0%
! GGCTAGACAAGTTGACAGTG+AGG - chr1_2:48385073-48385092 None:intergenic 50.0%
AGGAGAGGACCTCATTGCAT+TGG + chr1_2:48385616-48385635 Msa0074140:intron 50.0%
! GAGGACCTCATTGCATTGGT+AGG + chr1_2:48385620-48385639 Msa0074140:intron 50.0%
TTCTCCGATCCTAGTAACCC+TGG + chr1_2:48385687-48385706 Msa0074140:intron 50.0%
TCTCCGATCCTAGTAACCCT+GGG + chr1_2:48385688-48385707 Msa0074140:intron 50.0%
AGTCCCAGGGTTACTAGGAT+CGG - chr1_2:48385694-48385713 None:intergenic 50.0%
AGTTGAGTCCCAGGGTTACT+AGG - chr1_2:48385699-48385718 None:intergenic 50.0%
!! TTTTCGCGAGTTGAGTCCCA+GGG - chr1_2:48385707-48385726 None:intergenic 50.0%
TTAGGGCTAATCTGACCTGG+TGG + chr1_2:48385934-48385953 Msa0074140:intron 50.0%
TAGGGCTAATCTGACCTGGT+GGG + chr1_2:48385935-48385954 Msa0074140:intron 50.0%
! GTTGTGTGATGGGAGAGTCA+TGG + chr1_2:48386025-48386044 Msa0074140:intron 50.0%
AACGAGGTGATCTTCGTCCA+TGG - chr1_2:48386101-48386120 None:intergenic 50.0%
! GAGCCTATTGATTACAGCGG+CGG - chr1_2:48386136-48386155 None:intergenic 50.0%
AGTTGGAGGCAAATTGGCGT+TGG - chr1_2:48386203-48386222 None:intergenic 50.0%
AATGGAGAAGAAGGGAGGGA+AGG + chr1_2:48386322-48386341 Msa0074140:intron 50.0%
!! AGGCAGAAGCACTCACGAAA+AGG + chr1_2:48386377-48386396 Msa0074140:intron 50.0%
! GTTGTGTGATGGGAGAGTCA+TGG - chr1_2:48386025-48386044 None:intergenic 50.0%
TAGGGCTAATCTGACCTGGT+GGG - chr1_2:48385935-48385954 None:intergenic 50.0%
TTAGGGCTAATCTGACCTGG+TGG - chr1_2:48385934-48385953 None:intergenic 50.0%
GAATTAGGGCTGATCTGACC+TGG - chr1_2:48386563-48386582 None:intergenic 50.0%
TGTTAGCAGCCAACACTCAG+TGG - chr1_2:48386604-48386623 None:intergenic 50.0%
TTTCTTGGACCCCAGTGGAA+GGG - chr1_2:48386636-48386655 None:intergenic 50.0%
ATTTCTTGGACCCCAGTGGA+AGG - chr1_2:48386637-48386656 None:intergenic 50.0%
!! GCTGGTAGTGGCACCAAAAC+TGG - chr1_2:48380984-48381003 None:intergenic 55.0%
TACCTGCAGGGTATGTCACG+TGG + chr1_2:48381039-48381058 Msa0074140:CDS 55.0%
ACCTGCAGGGTATGTCACGT+GGG + chr1_2:48381040-48381059 Msa0074140:CDS 55.0%
CTTTGGTAAGGCGGAGGTTG+AGG - chr1_2:48382319-48382338 None:intergenic 55.0%
!! GAATGGTGTTGGTGTCCGAG+AGG - chr1_2:48382366-48382385 None:intergenic 55.0%
GTTGAGTCGTATGAAGGGGC+CGG - chr1_2:48382403-48382422 None:intergenic 55.0%
GGAGTTAGTGGAGGCGATTC+AGG - chr1_2:48382445-48382464 None:intergenic 55.0%
!! CGCGGTTTGGTGCATTTGGA+GGG - chr1_2:48382511-48382530 None:intergenic 55.0%
CCTCCAAATGCACCAAACCG+CGG + chr1_2:48382509-48382528 Msa0074140:intron 55.0%
!! ATGCCGCGGTTTGGTGCATT+TGG - chr1_2:48382515-48382534 None:intergenic 55.0%
! TGATTTGGCATGCCGCGGTT+TGG - chr1_2:48382524-48382543 None:intergenic 55.0%
!! AGAAGGTCCGCATCGGTTAC+CGG - chr1_2:48382548-48382567 None:intergenic 55.0%
CCCCAATCCAACACTCCCAA+TGG + chr1_2:48382580-48382599 Msa0074140:intron 55.0%
TTTGCTTCCGAGGTGTGGCA+AGG - chr1_2:48382657-48382676 None:intergenic 55.0%
CTGTGTTTGCTTCCGAGGTG+TGG - chr1_2:48382662-48382681 None:intergenic 55.0%
! TGCCGGGCTTTTCCAAATGG+AGG + chr1_2:48382837-48382856 Msa0074140:intron 55.0%
GGAGGCTTATGTGGGTGACT+TGG - chr1_2:48383109-48383128 None:intergenic 55.0%
! GTTGCGTTGGTGGAGGGATT+TGG - chr1_2:48383280-48383299 None:intergenic 55.0%
! GCATGTGTTGCGTTGGTGGA+GGG - chr1_2:48383286-48383305 None:intergenic 55.0%
! TGCATGTGTTGCGTTGGTGG+AGG - chr1_2:48383287-48383306 None:intergenic 55.0%
CAGTGCATGTGTTGCGTTGG+TGG - chr1_2:48383290-48383309 None:intergenic 55.0%
CACCAACGCAACACATGCAC+TGG + chr1_2:48383288-48383307 Msa0074140:intron 55.0%
!! TGTAGGGGTGTTGGAGGTTG+AGG - chr1_2:48383325-48383344 None:intergenic 55.0%
!! CTCAAGTGTAGGGGTGTTGG+AGG - chr1_2:48383331-48383350 None:intergenic 55.0%
CTCCAACACCCCTACACTTG+AGG + chr1_2:48383329-48383348 Msa0074140:intron 55.0%
! GGATGGTGGTTTAGGGGTGA+GGG - chr1_2:48383457-48383476 None:intergenic 55.0%
! AGGATGGTGGTTTAGGGGTG+AGG - chr1_2:48383458-48383477 None:intergenic 55.0%
TCACTAAGCCGACGCCTCAT+AGG + chr1_2:48384625-48384644 Msa0074140:intron 55.0%
!! GTTTTCGCGAGTTGAGTCCC+AGG - chr1_2:48385708-48385727 None:intergenic 55.0%
TGTTAGCCGTCAACACTCGG+TGG + chr1_2:48385888-48385907 Msa0074140:intron 55.0%
GGCGTCGCGCCTTTCAAATT+CGG - chr1_2:48386080-48386099 None:intergenic 55.0%
! ATTTGAAAGGCGCGACGCCA+TGG + chr1_2:48386081-48386100 Msa0074140:intron 55.0%
GTGCCGCCGCTGTAATCAAT+AGG + chr1_2:48386130-48386149 Msa0074140:intron 55.0%
TGCGCTTAGGACGAGGAGGA+GGG - chr1_2:48380421-48380440 None:intergenic 60.0%
TTGCGCTTAGGACGAGGAGG+AGG - chr1_2:48380422-48380441 None:intergenic 60.0%
GCTTTGCGCTTAGGACGAGG+AGG - chr1_2:48380425-48380444 None:intergenic 60.0%
TCCCACGTGACATACCCTGC+AGG - chr1_2:48381044-48381063 None:intergenic 60.0%
CGGCCATGTGCAGAAGCTGA+AGG + chr1_2:48381809-48381828 Msa0074140:CDS 60.0%
GAGGTTGAGGCTGGGGTATG+CGG - chr1_2:48382306-48382325 None:intergenic 60.0%
TAAGGCGGAGGTTGAGGCTG+GGG - chr1_2:48382313-48382332 None:intergenic 60.0%
GTAAGGCGGAGGTTGAGGCT+GGG - chr1_2:48382314-48382333 None:intergenic 60.0%
! GAGCTGCTTTGGTAAGGCGG+AGG - chr1_2:48382325-48382344 None:intergenic 60.0%
TATGAAGGGGCCGGCGTGTT+TGG - chr1_2:48382394-48382413 None:intergenic 60.0%
! TTGCGGAGTGGCGGAGTTAG+TGG - chr1_2:48382457-48382476 None:intergenic 60.0%
!! CCGCGGTTTGGTGCATTTGG+AGG - chr1_2:48382512-48382531 None:intergenic 60.0%
!! CCGGTTGATTTGGCATGCCG+CGG - chr1_2:48382529-48382548 None:intergenic 60.0%
CCGCGGCATGCCAAATCAAC+CGG + chr1_2:48382526-48382545 Msa0074140:intron 60.0%
!! CGGTGCCGGGCTTTTCCAAA+TGG + chr1_2:48382834-48382853 Msa0074140:intron 60.0%
GGCCAGTGCATGTGTTGCGT+TGG - chr1_2:48383293-48383312 None:intergenic 60.0%
AGGGGTGAGGGATGTCAGAG+TGG - chr1_2:48383445-48383464 None:intergenic 60.0%
GGAGAAGAAGGGAGGGAAGG+AGG + chr1_2:48386325-48386344 Msa0074140:intron 60.0%
GGTAAGGCGGAGGTTGAGGC+TGG - chr1_2:48382315-48382334 None:intergenic 65.0%
! CGGAGTGGCGGAGTTAGTGG+AGG - chr1_2:48382454-48382473 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 48379668 48387769 48379668 ID=Msa0074140;Name=Msa0074140
chr1_2 mRNA 48379668 48387769 48379668 ID=Msa0074140-mRNA-1;Parent=Msa0074140;Name=Msa0074140-mRNA-1;_AED=0.09;_eAED=0.09;_QI=229|1|1|1|0.62|0.66|9|627|295
chr1_2 exon 48379668 48380087 48379668 ID=Msa0074140-mRNA-1:exon:14701;Parent=Msa0074140-mRNA-1
chr1_2 exon 48380180 48380237 48380180 ID=Msa0074140-mRNA-1:exon:14702;Parent=Msa0074140-mRNA-1
chr1_2 exon 48380356 48380479 48380356 ID=Msa0074140-mRNA-1:exon:14703;Parent=Msa0074140-mRNA-1
chr1_2 exon 48381003 48381125 48381003 ID=Msa0074140-mRNA-1:exon:14704;Parent=Msa0074140-mRNA-1
chr1_2 exon 48381258 48381374 48381258 ID=Msa0074140-mRNA-1:exon:14705;Parent=Msa0074140-mRNA-1
chr1_2 exon 48381748 48381857 48381748 ID=Msa0074140-mRNA-1:exon:14706;Parent=Msa0074140-mRNA-1
chr1_2 exon 48385050 48385109 48385050 ID=Msa0074140-mRNA-1:exon:14707;Parent=Msa0074140-mRNA-1
chr1_2 exon 48386957 48387076 48386957 ID=Msa0074140-mRNA-1:exon:14708;Parent=Msa0074140-mRNA-1
chr1_2 exon 48387158 48387769 48387158 ID=Msa0074140-mRNA-1:exon:14709;Parent=Msa0074140-mRNA-1
chr1_2 five_prime_UTR 48379668 48379896 48379668 ID=Msa0074140-mRNA-1:five_prime_utr;Parent=Msa0074140-mRNA-1
chr1_2 CDS 48379897 48380087 48379897 ID=Msa0074140-mRNA-1:cds;Parent=Msa0074140-mRNA-1
chr1_2 CDS 48380180 48380237 48380180 ID=Msa0074140-mRNA-1:cds;Parent=Msa0074140-mRNA-1
chr1_2 CDS 48380356 48380479 48380356 ID=Msa0074140-mRNA-1:cds;Parent=Msa0074140-mRNA-1
chr1_2 CDS 48381003 48381125 48381003 ID=Msa0074140-mRNA-1:cds;Parent=Msa0074140-mRNA-1
chr1_2 CDS 48381258 48381374 48381258 ID=Msa0074140-mRNA-1:cds;Parent=Msa0074140-mRNA-1
chr1_2 CDS 48381748 48381857 48381748 ID=Msa0074140-mRNA-1:cds;Parent=Msa0074140-mRNA-1
chr1_2 CDS 48385050 48385109 48385050 ID=Msa0074140-mRNA-1:cds;Parent=Msa0074140-mRNA-1
chr1_2 CDS 48386957 48387061 48386957 ID=Msa0074140-mRNA-1:cds;Parent=Msa0074140-mRNA-1
chr1_2 three_prime_UTR 48387062 48387076 48387062 ID=Msa0074140-mRNA-1:three_prime_utr;Parent=Msa0074140-mRNA-1
chr1_2 three_prime_UTR 48387158 48387769 48387158 ID=Msa0074140-mRNA-1:three_prime_utr;Parent=Msa0074140-mRNA-1
Gene Sequence

>Msa0074140

ATGTTCTCTGTGGCAGAAGAAAACCAAACCATGAACTCTAATTCTAACTCAATGGCAGCACCAACAACAACTACAACAACTAGTGGTGGAGATGCTTCTGGTAAGAAGGTTAGAAAGCCTTACACAATTACCAAGTCAAGAGAAAGCTGGTCTGATGAAGAACATGACAAGTTTCTTGAAGCTCTTCAATTATTTGATAGAGATTGGAAGAAGATTGAAGATTTTGTTGGCTCTAAAACAGTTATTCAGATTCGAAGTCATGCCCAAAAATACTTCTTAAAGGTTCAAAAGAATGGAACACTAGCTCATGTCCCTCCTCCTCGTCCTAAGCGCAAAGCTATTCATCCTTATCCACAAAAAGCAACAAAAAATGCATCCATTGCTTTTGGCTCTTCGGCAAATACCCTTCTACCTGCAGGGTATGTCACGTGGGATGAAACGTCCATGCTGATGAATACTTGTCAGGATGAACTCAACAATCTTCAAGGAAATGAAGCTGACATTGGATCAAAGGGGATCAGCAACAGCGGTCTTAGTGGTGTTGAAGATACTAATACAAGGCTCCCTACTTCTCAAATACCAACACAAGGGACACAAAATCCCGTGATTCATGGTTTGCCGGACTTTGCTGAAGTTTACGGTTTCATTGGAAGTGTTTTTGATCCGGATACAAACGGCCATGTGCAGAAGCTGAAGGAAATGGACCCTATAAACTTTGAAACTGTTTTGTTGTTAATGAGAAACCTCACTGTCAACTTGTCTAGCCCTAATTTTGATCCCATTAAGAAGGCAATGTCAACATATGATGAGAATAGCGATGCAGTAGAAGCTAATGATGTGAAGAAGCAAACAAATGATGTATCATGTCAAACCACTACTGACCACTAG
Protein sequence

>Msa0074140

MFSVAEENQTMNSNSNSMAAPTTTTTTSGGDASGKKVRKPYTITKSRESWSDEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQKNGTLAHVPPPRPKRKAIHPYPQKATKNASIAFGSSANTLLPAGYVTWDETSMLMNTCQDELNNLQGNEADIGSKGISNSGLSGVEDTNTRLPTSQIPTQGTQNPVIHGLPDFAEVYGFIGSVFDPDTNGHVQKLKEMDPINFETVLLLMRNLTVNLSSPNFDPIKKAMSTYDENSDAVEANDVKKQTNDVSCQTTTDH*