AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0074180

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0074180 MtrunA17_Chr1g0181771 94.966 298 9 1 1 292 1 298 0.0 581
Msa0074180 MtrunA17_Chr8g0348391 53.846 260 98 5 35 273 52 310 9.07e-86 260
Msa0074180 MtrunA17_Chr6g0469431 64.384 146 41 4 17 153 18 161 3.09e-56 181
Msa0074180 MtrunA17_Chr6g0481061 57.843 102 35 1 28 121 38 139 9.04e-26 106
Msa0074180 MtrunA17_Chr3g0109791 59.140 93 30 1 36 120 46 138 1.32e-25 104
Msa0074180 MtrunA17_Chr5g0433851 61.972 71 27 0 28 98 24 94 6.24e-25 103
Msa0074180 MtrunA17_Chr7g0276421 57.143 70 30 0 28 97 7 76 6.48e-23 98.6
Msa0074180 MtrunA17_Chr6g0469441 68.519 54 17 0 206 259 24 77 1.16e-21 87.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0074180 AT3G09600.1 66.667 261 74 4 21 269 17 276 2.71e-123 354
Msa0074180 AT3G09600.7 66.667 261 74 4 21 269 17 276 2.71e-123 354
Msa0074180 AT3G09600.2 65.799 269 73 5 21 277 17 278 9.14e-121 347
Msa0074180 AT3G09600.6 65.799 269 73 5 21 277 17 278 9.14e-121 347
Msa0074180 AT3G09600.4 68.127 251 67 4 21 259 17 266 1.44e-120 347
Msa0074180 AT5G02840.3 64.706 255 71 5 30 267 31 283 4.54e-111 323
Msa0074180 AT5G02840.1 63.178 258 76 5 30 270 31 286 6.38e-109 318
Msa0074180 AT5G02840.2 63.178 258 76 5 30 270 31 286 6.38e-109 318
Msa0074180 AT3G09600.3 65.438 217 62 4 65 269 5 220 6.52e-98 288
Msa0074180 AT3G09600.8 65.438 217 62 4 65 269 5 220 6.52e-98 288
Msa0074180 AT5G02840.4 63.913 230 64 5 30 242 31 258 3.77e-96 284
Msa0074180 AT5G02840.5 63.478 230 65 5 30 242 31 258 1.61e-95 283
Msa0074180 AT3G09600.5 64.444 225 61 5 65 277 5 222 6.85e-95 280
Msa0074180 AT3G09600.9 64.444 225 61 5 65 277 5 222 6.85e-95 280
Msa0074180 AT5G52660.1 52.688 279 120 4 19 285 44 322 5.16e-87 263
Msa0074180 AT5G52660.2 51.071 280 124 4 19 285 44 323 4.47e-86 261
Msa0074180 AT1G01520.1 55.906 254 94 6 26 269 40 285 4.90e-85 257
Msa0074180 AT4G01280.2 51.852 270 111 6 17 268 29 297 5.35e-84 255
Msa0074180 AT4G01280.1 51.301 269 113 6 17 268 29 296 8.93e-83 251
Msa0074180 AT1G01520.3 56.967 244 87 6 26 259 40 275 1.27e-82 251
Msa0074180 AT1G01520.2 55.507 227 83 6 26 242 40 258 7.80e-72 222
Msa0074180 AT1G01520.4 55.507 227 83 6 26 242 40 258 7.80e-72 222
Msa0074180 AT5G17300.1 44.828 145 60 3 29 161 37 173 7.18e-28 111
Msa0074180 AT5G37260.1 56.701 97 38 1 28 120 17 113 2.17e-26 105
Msa0074180 AT1G01520.5 71.429 63 18 0 207 269 139 201 2.72e-26 103
Msa0074180 AT1G01060.8 35.754 179 101 4 26 193 3 178 8.12e-25 104
Msa0074180 AT1G01060.2 35.754 179 101 4 26 193 3 178 8.12e-25 104
Msa0074180 AT1G01060.3 35.754 179 101 4 26 193 3 178 8.12e-25 104
Msa0074180 AT1G01060.1 35.754 179 101 4 26 193 3 178 8.12e-25 104
Msa0074180 AT1G01060.7 35.754 179 101 4 26 193 3 178 8.12e-25 104
Msa0074180 AT1G18330.1 55.319 94 34 2 36 121 39 132 2.29e-24 101
Msa0074180 AT1G01060.4 51.250 80 39 0 26 105 3 82 2.41e-24 103
Msa0074180 AT3G10113.1 55.319 94 34 2 36 121 54 147 4.75e-24 100
Msa0074180 AT1G18330.2 55.319 94 34 2 36 121 65 158 5.41e-24 100
Msa0074180 AT2G46830.1 59.722 72 29 0 26 97 3 74 2.63e-23 100

Find 94 sgRNAs with CRISPR-Local

Find 598 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTACACATGTGGCATATT+TGG 0.134325 1_2:+48412885 None:intergenic
CTTACAATGGGATCAAAATT+AGG 0.151868 1_2:+48415357 None:intergenic
CATAATAGAAACTAACTAAT+TGG 0.195892 1_2:+48420570 None:intergenic
CTACCAGCATCCATTGCTTT+TGG 0.209435 1_2:-48419452 Msa0074180:intron
CCGGACTTTGCTGAAGTTTA+CGG 0.260906 1_2:-48418695 Msa0074180:CDS
TGAGTTAGAATTAGAGTTCA+TGG 0.279860 1_2:+48420522 None:intergenic
CTCACAGTTTCAAAGTTTAT+AGG 0.310240 1_2:+48418608 None:intergenic
TGGCTCTAAAACAGTTATTC+AGG 0.322186 1_2:-48420231 Msa0074180:intron
CTTGACTTGGTAATTGTGTA+AGG 0.342024 1_2:+48420433 None:intergenic
TCACAGTTTCAAAGTTTATA+GGG 0.345459 1_2:+48418609 None:intergenic
GCTCAATAATCTAATGAAAA+AGG 0.354018 1_2:+48412837 None:intergenic
ACGATATTTAACAGGTTTGC+CGG 0.354143 1_2:-48418714 Msa0074180:intron
ATTGTTATATTGCTCTGATT+TGG 0.364135 1_2:-48413018 Msa0074180:three_prime_UTR
TTACAATGGGATCAAAATTA+GGG 0.364435 1_2:+48415358 None:intergenic
CTAGTTGTTGTAGTTGTTGT+TGG 0.376561 1_2:+48420490 None:intergenic
TATTCAGATTTGATAGAGAT+TGG 0.391995 1_2:-48420274 Msa0074180:intron
TTCTTAAAGGTTCAAAAGAA+TGG 0.393543 1_2:-48420068 Msa0074180:CDS
GATAAATGTTAATAAGTTAG+TGG 0.394238 1_2:-48413140 Msa0074180:three_prime_UTR
TTGACAACTTGTGTTATGTT+TGG 0.396112 1_2:-48420642 Msa0074180:five_prime_UTR
TGCACATGGCCGTTTGTATC+CGG 0.400201 1_2:+48418650 None:intergenic
TGACATACCCTGCAGGTAGA+AGG 0.407875 1_2:+48419414 None:intergenic
GGATGAATAGCTTTGCGCTT+AGG 0.413895 1_2:+48420017 None:intergenic
CCACTAGCAATTTGTTGACT+TGG 0.414790 1_2:-48413430 Msa0074180:intron
TAACACTTCTACAGTTAGAT+TGG 0.418283 1_2:-48413341 Msa0074180:intron
ACTAGTGGTGGAGATGCTTC+TGG 0.418390 1_2:-48420472 Msa0074180:CDS
GCTGAAGTTTACGGTTTCAT+TGG 0.426347 1_2:-48418686 Msa0074180:CDS
GATGAACTCAACAATCTTCA+AGG 0.432102 1_2:-48419353 Msa0074180:CDS
TTAGCTGACATTGGATCAAA+GGG 0.440291 1_2:-48419194 Msa0074180:intron
TGTGCAGAAGCTGAAGGAAA+TGG 0.443024 1_2:-48418633 Msa0074180:CDS
TGTGTTGGTATTTGAGAAGT+AGG 0.447932 1_2:+48419122 None:intergenic
ATAATAGAAACTAACTAATT+GGG 0.448680 1_2:+48420571 None:intergenic
ACACAAAATCCCGTGATTCA+TGG 0.453178 1_2:-48419095 Msa0074180:intron
CTACGGTGATTCTGATGAAT+GGG 0.456757 1_2:-48420737 Msa0074180:five_prime_UTR
TAGAATTAGAGTTCATGGTT+TGG 0.460644 1_2:+48420527 None:intergenic
ACACTCTCATGCCTAACTTC+TGG 0.465700 1_2:+48413284 None:intergenic
TGACAACTTGTGTTATGTTT+GGG 0.466397 1_2:-48420641 Msa0074180:five_prime_UTR
TTTACTGATTTAGCTGACAT+TGG 0.472761 1_2:-48419203 Msa0074180:intron
TTTCCTTCAGCTTCTGCACA+TGG 0.485443 1_2:+48418636 None:intergenic
ACTACGGTGATTCTGATGAA+TGG 0.486932 1_2:-48420738 Msa0074180:five_prime_UTR
AACAATCTTCAAGGAAATGA+AGG 0.487995 1_2:-48419344 Msa0074180:intron
TTGCGCTTAGGACGAGGAGG+AGG 0.489119 1_2:+48420029 None:intergenic
ATCAGCAACAGCGGTCTTAG+TGG 0.492479 1_2:-48419170 Msa0074180:CDS
GAACTCTAATTCTAACTCAA+TGG 0.493422 1_2:-48420518 Msa0074180:CDS
GCAAATACCCTTCTACCTGC+AGG 0.497509 1_2:-48419422 Msa0074180:CDS
CATGCTGATGAATACTTGTC+AGG 0.511561 1_2:-48419375 Msa0074180:CDS
AAATTGAATTATGAAATGTT+CGG 0.517235 1_2:-48420679 Msa0074180:five_prime_UTR
GTGTTGGTATTTGAGAAGTA+GGG 0.528190 1_2:+48419123 None:intergenic
TTTAGCTGACATTGGATCAA+AGG 0.530841 1_2:-48419195 Msa0074180:intron
TGTGTTATGTTTGGGACAGT+TGG 0.530997 1_2:-48420633 Msa0074180:five_prime_UTR
CCGTAAACTTCAGCAAAGTC+CGG 0.533484 1_2:+48418695 None:intergenic
AGACCAGCTTTCTCTTGACT+TGG 0.533707 1_2:+48420420 None:intergenic
TTCAAAGTCGGTAACTCGGT+TGG 0.537616 1_2:+48413049 None:intergenic
ATGACAACAGTTACATTCAC+CGG 0.538240 1_2:+48413235 None:intergenic
AGAAACTAACTAATTGGGTA+TGG 0.541243 1_2:+48420576 None:intergenic
TGGAGATGCTTCTGGTAAGA+AGG 0.544373 1_2:-48420464 Msa0074180:CDS
TACTATGACTATTCTTGCTG+TGG 0.551136 1_2:+48413206 None:intergenic
TACCTGCAGGGTATGTCACG+TGG 0.562293 1_2:-48419409 Msa0074180:CDS
ATAGCTTTGCGCTTAGGACG+AGG 0.563263 1_2:+48420023 None:intergenic
ACAGTTAGATTGGTCAAACA+TGG 0.583368 1_2:-48413331 Msa0074180:intron
GACATACCCTGCAGGTAGAA+GGG 0.588018 1_2:+48419415 None:intergenic
GGACAGTATTATTCTGTCTG+TGG 0.589210 1_2:-48420768 Msa0074180:five_prime_UTR
TGCAGTGATAACTATAGTGA+TGG 0.589386 1_2:+48420605 None:intergenic
TTACCAAGTCAAGAGAAAGC+TGG 0.591540 1_2:-48420423 Msa0074180:CDS
TGCCGAAGAGCCAAAAGCAA+TGG 0.592704 1_2:+48419442 None:intergenic
ATTGTTCAAAGTCGGTAACT+CGG 0.595384 1_2:+48413045 None:intergenic
GACAGTATTATTCTGTCTGT+GGG 0.596269 1_2:-48420767 Msa0074180:five_prime_UTR
TTAGATTGGTCAAACATGGA+TGG 0.596610 1_2:-48413327 Msa0074180:three_prime_UTR
TCAGCTGTAAAGTGTAAAGC+CGG 0.596664 1_2:-48413254 Msa0074180:three_prime_UTR
CAATAGCTATTGTTCAAAGT+CGG 0.599476 1_2:+48413037 None:intergenic
ACAACTACAACAACTAGTGG+TGG 0.601385 1_2:-48420484 Msa0074180:CDS
CAAATACCCTTCTACCTGCA+GGG 0.604923 1_2:-48419421 Msa0074180:CDS
TGTCTGTGGGCACAACACTA+CGG 0.612371 1_2:-48420754 Msa0074180:five_prime_UTR
CGGCCATGTGCAGAAGCTGA+AGG 0.613903 1_2:-48418639 Msa0074180:CDS
AAATTGCTAGTGGTCAGTAG+TGG 0.620002 1_2:+48413440 None:intergenic
AGTTTCTATTATGTTCTCTG+TGG 0.620410 1_2:-48420560 Msa0074180:exon
TGCGCTTAGGACGAGGAGGA+GGG 0.622142 1_2:+48420030 None:intergenic
ACCTGCAGGGTATGTCACGT+GGG 0.625418 1_2:-48419408 Msa0074180:CDS
CAGACGATTACCATGAATCA+CGG 0.628602 1_2:+48419085 None:intergenic
AGACGATTACCATGAATCAC+GGG 0.628967 1_2:+48419086 None:intergenic
AGTGATAACTATAGTGATGG+AGG 0.633179 1_2:+48420608 None:intergenic
TCCCACGTGACATACCCTGC+AGG 0.633438 1_2:+48419407 None:intergenic
CTGACAAGTATTCATCAGCA+TGG 0.637093 1_2:+48419376 None:intergenic
ACAACAACTACAACAACTAG+TGG 0.647197 1_2:-48420487 Msa0074180:CDS
GGCTAGACAAGTTGACAGTG+AGG 0.653452 1_2:+48415379 None:intergenic
AAAGTGTGACTTTACACATG+TGG 0.657504 1_2:+48412876 None:intergenic
ACTTCTCAAATACCAACACA+AGG 0.657953 1_2:-48419119 Msa0074180:CDS
CCAAGTCAACAAATTGCTAG+TGG 0.669585 1_2:+48413430 None:intergenic
TCAAAGGGGATCAGCAACAG+CGG 0.674075 1_2:-48419179 Msa0074180:CDS
GTGTTGAAGATACTAATACA+AGG 0.674684 1_2:-48419148 Msa0074180:CDS
GCTTTGCGCTTAGGACGAGG+AGG 0.703477 1_2:+48420026 None:intergenic
CTTCTCAAATACCAACACAA+GGG 0.709558 1_2:-48419118 Msa0074180:CDS
CAAACATGGATGGAAGACTG+AGG 0.737564 1_2:-48413317 Msa0074180:three_prime_UTR
TAGCTGACATTGGATCAAAG+GGG 0.749798 1_2:-48419193 Msa0074180:CDS
TGTGGTGTATATGAAACGTG+AGG 0.781020 1_2:-48420789 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATGAATAAATTAAATAAG+AGG - chr1_2:48418367-48418386 Msa0074180:intron 10.0%
!! CTAATTATATTTAATATTCA+AGG + chr1_2:48419942-48419961 None:intergenic 10.0%
!!! AATTTTCTGTATAATATTTT+AGG - chr1_2:48420729-48420748 Msa0074180:five_prime_UTR 10.0%
!! AAATTGAATTATGAAATGTT+CGG - chr1_2:48412837-48412856 Msa0074180:three_prime_UTR 15.0%
!! ATAATAGAAACTAACTAATT+GGG + chr1_2:48412948-48412967 None:intergenic 15.0%
!! ATATATTTGAAAACAAATTG+TGG - chr1_2:48413708-48413727 Msa0074180:intron 15.0%
!! GTTTATATTATATGATACTA+CGG + chr1_2:48414519-48414538 None:intergenic 15.0%
!!! ATTTTTAATGATTCAATTTG+CGG + chr1_2:48415542-48415561 None:intergenic 15.0%
!! AAATTGAATCATTAAAAATG+CGG - chr1_2:48415543-48415562 Msa0074180:intron 15.0%
!! CTTATTAATTATGAGTTTAT+CGG + chr1_2:48416591-48416610 None:intergenic 15.0%
!!! TTTAGTTTTTCAAGTAATTA+GGG + chr1_2:48418527-48418546 None:intergenic 15.0%
!!! TTTTAGTTTTTCAAGTAATT+AGG + chr1_2:48418528-48418547 None:intergenic 15.0%
!!! GAAAAACTAAAATAGTTTTT+AGG - chr1_2:48418536-48418555 Msa0074180:intron 15.0%
!! CATAATAGAAACTAACTAAT+TGG + chr1_2:48412949-48412968 None:intergenic 20.0%
!! AAAGAATGATATAAGATTGA+AGG + chr1_2:48413177-48413196 None:intergenic 20.0%
!! AAAAAAAAAGAGTAAAGACA+TGG + chr1_2:48413323-48413342 None:intergenic 20.0%
!!! AACCTTTAAGAAGTATTTTT+GGG + chr1_2:48413440-48413459 None:intergenic 20.0%
!!! TTTTCTTTTCTCTTTTTACT+TGG - chr1_2:48413565-48413584 Msa0074180:intron 20.0%
!! AATATATACATCGAAAATTG+TGG + chr1_2:48413695-48413714 None:intergenic 20.0%
!!! TATTTTGACACAAATTTAAC+TGG + chr1_2:48413966-48413985 None:intergenic 20.0%
!!! ACAAAAAGTAGCAATTTTTA+AGG + chr1_2:48414021-48414040 None:intergenic 20.0%
!! TCATATAACATAATAAGTAG+TGG + chr1_2:48414292-48414311 None:intergenic 20.0%
!!! TTAAGTTTTGAAACAATACT+CGG - chr1_2:48414471-48414490 Msa0074180:intron 20.0%
!!! TTAAAATACAACAGTTTTCA+AGG - chr1_2:48416781-48416800 Msa0074180:intron 20.0%
!!! TATCATAAGTTTTCTCAAAA+TGG + chr1_2:48416905-48416924 None:intergenic 20.0%
!! ATAGCTTAACATTGAATAAT+AGG - chr1_2:48417118-48417137 Msa0074180:intron 20.0%
!! TAGCTTAACATTGAATAATA+GGG - chr1_2:48417119-48417138 Msa0074180:intron 20.0%
!! ATCAAATTAACCTCTAATAT+TGG + chr1_2:48417300-48417319 None:intergenic 20.0%
!!! ATATTAGAGGTTAATTTGAT+AGG - chr1_2:48417300-48417319 Msa0074180:intron 20.0%
!!! TATTAGAGGTTAATTTGATA+GGG - chr1_2:48417301-48417320 Msa0074180:intron 20.0%
!!! ACATGTTAATTTTACTCTTT+TGG - chr1_2:48417426-48417445 Msa0074180:intron 20.0%
!!! CATGTTAATTTTACTCTTTT+GGG - chr1_2:48417427-48417446 Msa0074180:intron 20.0%
!! AAGCTATATATTTACACTAA+AGG - chr1_2:48417472-48417491 Msa0074180:intron 20.0%
!! GAAATTATTATTCACTAATG+TGG - chr1_2:48417595-48417614 Msa0074180:intron 20.0%
!! TTGATATTGAAACTTACAAT+GGG + chr1_2:48418174-48418193 None:intergenic 20.0%
!! ATTGATATTGAAACTTACAA+TGG + chr1_2:48418175-48418194 None:intergenic 20.0%
!!! TATATAGTTTTGTAACATAC+TGG - chr1_2:48418207-48418226 Msa0074180:intron 20.0%
!! GAAAACAAAATAAACTTTCT+GGG + chr1_2:48418233-48418252 None:intergenic 20.0%
!! TGAAAACAAAATAAACTTTC+TGG + chr1_2:48418234-48418253 None:intergenic 20.0%
!! TTCATAAATATAGTGACTAT+GGG + chr1_2:48418354-48418373 None:intergenic 20.0%
!! ATTCATAAATATAGTGACTA+TGG + chr1_2:48418355-48418374 None:intergenic 20.0%
!!! TTAGTTTTTCAAGTAATTAG+GGG + chr1_2:48418526-48418545 None:intergenic 20.0%
!! GATAAATGTTAATAAGTTAG+TGG - chr1_2:48420376-48420395 Msa0074180:intron 20.0%
!!! TTTTTATGGCATAATGTTAA+TGG - chr1_2:48420557-48420576 Msa0074180:exon 20.0%
! TATTCAGATTTGATAGAGAT+TGG - chr1_2:48413242-48413261 Msa0074180:three_prime_UTR 25.0%
!! AAGAAGATTGAAGATTTTGT+TGG - chr1_2:48413265-48413284 Msa0074180:three_prime_UTR 25.0%
!!! GAACCTTTAAGAAGTATTTT+TGG + chr1_2:48413441-48413460 None:intergenic 25.0%
! TTCTTAAAGGTTCAAAAGAA+TGG - chr1_2:48413448-48413467 Msa0074180:CDS 25.0%
! GATGAACAATATGTAAAACA+AGG - chr1_2:48413631-48413650 Msa0074180:intron 25.0%
! AATACAATTTGAGTGATCAA+GGG - chr1_2:48413780-48413799 Msa0074180:intron 25.0%
! GATGATTAACTCAGTTTAAA+TGG + chr1_2:48413919-48413938 None:intergenic 25.0%
!! TTAAGTTGTGAAACAATACT+AGG - chr1_2:48414617-48414636 Msa0074180:intron 25.0%
!!! TCATTTTGACGATATTTAAC+AGG - chr1_2:48414794-48414813 Msa0074180:intron 25.0%
! TCACAGTTTCAAAGTTTATA+GGG + chr1_2:48414910-48414929 None:intergenic 25.0%
! ACTTAGCTATATAATCAGAT+AGG - chr1_2:48415003-48415022 Msa0074180:intron 25.0%
! TTTCTCTTTATCCAATCAAA+AGG + chr1_2:48416197-48416216 None:intergenic 25.0%
! TGTCTTTGGATAATTCAAAT+TGG + chr1_2:48416324-48416343 None:intergenic 25.0%
! AGTTTATCGGAAGATAAATT+GGG + chr1_2:48416578-48416597 None:intergenic 25.0%
! ATGGTTTATTTGGATCATAA+AGG + chr1_2:48416745-48416764 None:intergenic 25.0%
!! CCTTTAAGAAATGGTTTATT+TGG + chr1_2:48416755-48416774 None:intergenic 25.0%
! CCAAATAAACCATTTCTTAA+AGG - chr1_2:48416752-48416771 Msa0074180:intron 25.0%
!! TAAGACTTTCCTTTAAGAAA+TGG + chr1_2:48416764-48416783 None:intergenic 25.0%
!! ACTTATGATAACCTTTTTGA+AGG - chr1_2:48416814-48416833 Msa0074180:intron 25.0%
! AGGACTTTATCATATCAAAT+TGG - chr1_2:48416857-48416876 Msa0074180:intron 25.0%
!!! TTTTCTCAAAATGGTTTTAG+TGG + chr1_2:48416896-48416915 None:intergenic 25.0%
!! ACTTATGATAACCTTTTTGA+AGG - chr1_2:48416814-48416833 Msa0074180:intron 25.0%
! AGGACTTTATCATATCAAAT+TGG - chr1_2:48416857-48416876 Msa0074180:intron 25.0%
! GAATGTTCTTTAACATTATC+AGG - chr1_2:48417088-48417107 Msa0074180:intron 25.0%
! ATAAGCTAATCAAAATGTCA+TGG - chr1_2:48417252-48417271 Msa0074180:intron 25.0%
! TAAGCTAATCAAAATGTCAT+GGG - chr1_2:48417253-48417272 Msa0074180:intron 25.0%
!! ATTAGAGGTTAATTTGATAG+GGG - chr1_2:48417302-48417321 Msa0074180:intron 25.0%
! ATTATGCGAATAATTAACTC+TGG - chr1_2:48417505-48417524 Msa0074180:intron 25.0%
!! GCTTTTTAGATGAAATTCAA+AGG + chr1_2:48417564-48417583 None:intergenic 25.0%
! AATTTCATCTAAAAAGCTTG+AGG - chr1_2:48417567-48417586 Msa0074180:intron 25.0%
! CTTCATCCTTTGATATTATA+AGG - chr1_2:48417658-48417677 Msa0074180:intron 25.0%
! GTTTGACCTTATAATATCAA+AGG + chr1_2:48417667-48417686 None:intergenic 25.0%
! ATCTTAAAAAACTACCTATG+AGG + chr1_2:48417709-48417728 None:intergenic 25.0%
! CATTATATGGGTGAATAAAT+TGG + chr1_2:48417923-48417942 None:intergenic 25.0%
! CAATTTATTCACCCATATAA+TGG - chr1_2:48417921-48417940 Msa0074180:intron 25.0%
! TTAACTAGGAAATCAAAATG+AGG - chr1_2:48417992-48418011 Msa0074180:intron 25.0%
! TTACAATGGGATCAAAATTA+GGG + chr1_2:48418161-48418180 None:intergenic 25.0%
!!! ATAGACCAACACTTATTTTT+TGG - chr1_2:48418902-48418921 Msa0074180:intron 25.0%
! TTTCAGCTTATTTCGAATTA+GGG + chr1_2:48418934-48418953 None:intergenic 25.0%
!! TTTTCAGCTTATTTCGAATT+AGG + chr1_2:48418935-48418954 None:intergenic 25.0%
! TCCCATTGAGAATTAAATTA+GGG - chr1_2:48418984-48419003 Msa0074180:intron 25.0%
!!! CATAGATTTCAATGGTTTTT+TGG + chr1_2:48419293-48419312 None:intergenic 25.0%
! CAAAAAACCATTGAAATCTA+TGG - chr1_2:48419291-48419310 Msa0074180:intron 25.0%
!!! TCTTTTCATTTTTACTTCTG+AGG + chr1_2:48419317-48419336 None:intergenic 25.0%
! AAAGGCAATGAAGAAATAAA+TGG - chr1_2:48419371-48419390 Msa0074180:CDS 25.0%
! AAGAAATAAATGGAGAAGAA+GGG - chr1_2:48419381-48419400 Msa0074180:CDS 25.0%
! TAAAGAAGTTCTTATGAATG+AGG - chr1_2:48419891-48419910 Msa0074180:intron 25.0%
! ATTGTTATATTGCTCTGATT+TGG - chr1_2:48420498-48420517 Msa0074180:CDS 25.0%
! AATGGTCTGTATCAAAAAAT+TGG - chr1_2:48420575-48420594 Msa0074180:five_prime_UTR 25.0%
! ATGGTCTGTATCAAAAAATT+GGG - chr1_2:48420576-48420595 Msa0074180:five_prime_UTR 25.0%
! GCTCAATAATCTAATGAAAA+AGG + chr1_2:48420682-48420701 None:intergenic 25.0%
!!! CTGTATAATATTTTAGGAGT+TGG - chr1_2:48420735-48420754 Msa0074180:five_prime_UTR 25.0%
! TCATTCATTCATCTTTTGCA+CGG + chr1_2:48412806-48412825 None:intergenic 30.0%
TTGACAACTTGTGTTATGTT+TGG - chr1_2:48412874-48412893 Msa0074180:three_prime_UTR 30.0%
TGACAACTTGTGTTATGTTT+GGG - chr1_2:48412875-48412894 Msa0074180:three_prime_UTR 30.0%
AGAAACTAACTAATTGGGTA+TGG + chr1_2:48412943-48412962 None:intergenic 30.0%
AGTTTCTATTATGTTCTCTG+TGG - chr1_2:48412956-48412975 Msa0074180:three_prime_UTR 30.0%
TAGAATTAGAGTTCATGGTT+TGG + chr1_2:48412992-48413011 None:intergenic 30.0%
TGAGTTAGAATTAGAGTTCA+TGG + chr1_2:48412997-48413016 None:intergenic 30.0%
GAACTCTAATTCTAACTCAA+TGG - chr1_2:48412998-48413017 Msa0074180:three_prime_UTR 30.0%
GATATAAGATTGAAGGTAGA+TGG + chr1_2:48413170-48413189 None:intergenic 30.0%
TGCCCAAAAATACTTCTTAA+AGG - chr1_2:48413435-48413454 Msa0074180:exon 30.0%
!!! TTTGTTGCTTTTTGTGGATA+AGG + chr1_2:48413523-48413542 None:intergenic 30.0%
!!! CCATTTTTTGTTGCTTTTTG+TGG + chr1_2:48413529-48413548 None:intergenic 30.0%
CCACAAAAAGCAACAAAAAA+TGG - chr1_2:48413526-48413545 Msa0074180:CDS 30.0%
ATCATGCATATTTAGACATC+TGG - chr1_2:48413740-48413759 Msa0074180:intron 30.0%
GAATACAATTTGAGTGATCA+AGG - chr1_2:48413779-48413798 Msa0074180:intron 30.0%
AATGGACGATTAATTACGTT+TGG + chr1_2:48413901-48413920 None:intergenic 30.0%
AACAAATTTCTACGGCAATT+TGG + chr1_2:48413941-48413960 None:intergenic 30.0%
AACTGGACAACAAATTTCTA+CGG + chr1_2:48413949-48413968 None:intergenic 30.0%
AACAATCTTCAAGGAAATGA+AGG - chr1_2:48414172-48414191 Msa0074180:intron 30.0%
!! TTTACTGATTTAGCTGACAT+TGG - chr1_2:48414313-48414332 Msa0074180:intron 30.0%
GTGTTGAAGATACTAATACA+AGG - chr1_2:48414368-48414387 Msa0074180:intron 30.0%
TGAGTTTATTGAAATCCTTG+AGG - chr1_2:48414542-48414561 Msa0074180:intron 30.0%
ATATAGAAAGTTGCATGCAT+AGG - chr1_2:48414646-48414665 Msa0074180:intron 30.0%
CTCACAGTTTCAAAGTTTAT+AGG + chr1_2:48414911-48414930 None:intergenic 30.0%
!! TGTTTGCTGTTATAACAGAT+GGG + chr1_2:48415215-48415234 None:intergenic 30.0%
!!! TGATATCGGTTGTTTTTTTC+TGG + chr1_2:48415254-48415273 None:intergenic 30.0%
!!! TTTTTTCTGTTTTTTGCTGC+TGG + chr1_2:48415293-48415312 None:intergenic 30.0%
CAAAAAACAGAAAAAACCTG+AGG - chr1_2:48415297-48415316 Msa0074180:intron 30.0%
TCCCAATGGACAAATAAATT+AGG - chr1_2:48415662-48415681 Msa0074180:intron 30.0%
GCCTAATTTATTTGTCCATT+GGG + chr1_2:48415666-48415685 None:intergenic 30.0%
!! AAAGCCAAATTCACTTTTGA+GGG - chr1_2:48415833-48415852 Msa0074180:intron 30.0%
AATACCCTCAAAAGTGAATT+TGG + chr1_2:48415840-48415859 None:intergenic 30.0%
TTGGATAAAGAGAAAAGTCT+AGG - chr1_2:48416202-48416221 Msa0074180:intron 30.0%
!!! AAATATGAGTTTTTGGGATG+TGG + chr1_2:48416263-48416282 None:intergenic 30.0%
!! TTTGGTTTGTAAACCAAAAG+AGG + chr1_2:48416545-48416564 None:intergenic 30.0%
GAGTTTATCGGAAGATAAAT+TGG + chr1_2:48416579-48416598 None:intergenic 30.0%
CATAACTAGGAAAGTTTATG+AGG - chr1_2:48416628-48416647 Msa0074180:intron 30.0%
AAATATTACCCTCCTCAAAA+TGG + chr1_2:48416654-48416673 None:intergenic 30.0%
! TTATATCGCTTCAAGTTACT+AGG + chr1_2:48416684-48416703 None:intergenic 30.0%
ACTTTATTCTGCTATATGTG+TGG - chr1_2:48416717-48416736 Msa0074180:intron 30.0%
!!! GACATTCAAAATGGTTTTAG+TGG + chr1_2:48416997-48417016 None:intergenic 30.0%
AAAGCACATGACATTCAAAA+TGG + chr1_2:48417006-48417025 None:intergenic 30.0%
! TATGATAACTTGCCTCAATA+AGG - chr1_2:48417174-48417193 Msa0074180:intron 30.0%
! ATGATAACTTGCCTCAATAA+GGG - chr1_2:48417175-48417194 Msa0074180:intron 30.0%
! TTAGAGGTTAATTTGATAGG+GGG - chr1_2:48417303-48417322 Msa0074180:intron 30.0%
AAATTAACATGTGTTTCCCA+TGG + chr1_2:48417418-48417437 None:intergenic 30.0%
! TTAACTCTGGAGAAACTATT+AGG - chr1_2:48417518-48417537 Msa0074180:intron 30.0%
! CATTTTACAACTGTCTCTTA+GGG - chr1_2:48417627-48417646 Msa0074180:intron 30.0%
! ATTTTACAACTGTCTCTTAG+GGG - chr1_2:48417628-48417647 Msa0074180:intron 30.0%
!! TGTTTTAAGCCTCTTAACAT+GGG + chr1_2:48417860-48417879 None:intergenic 30.0%
!!! TTGTTTTAAGCCTCTTAACA+TGG + chr1_2:48417861-48417880 None:intergenic 30.0%
TATATTTGATGTTCTTGTGC+AGG - chr1_2:48418095-48418114 Msa0074180:intron 30.0%
CTTACAATGGGATCAAAATT+AGG + chr1_2:48418162-48418181 None:intergenic 30.0%
ATTCATTCCAAGTTTCATTC+TGG - chr1_2:48418269-48418288 Msa0074180:intron 30.0%
TTAGAAACCAGAATGAAACT+TGG + chr1_2:48418279-48418298 None:intergenic 30.0%
TAAACACGCATAACGTTTAT+AGG - chr1_2:48418563-48418582 Msa0074180:intron 30.0%
TTCTTGTGCATAACGTTTAT+AGG + chr1_2:48418640-48418659 None:intergenic 30.0%
!! AAGTGTTGGTCTATTACAAA+AGG + chr1_2:48418896-48418915 None:intergenic 30.0%
CTGATCCAAAAAATAAGTGT+TGG + chr1_2:48418910-48418929 None:intergenic 30.0%
GTCCCATTGAGAATTAAATT+AGG - chr1_2:48418983-48419002 Msa0074180:intron 30.0%
GCCCTAATTTAATTCTCAAT+GGG + chr1_2:48418988-48419007 None:intergenic 30.0%
AGCCCTAATTTAATTCTCAA+TGG + chr1_2:48418989-48419008 None:intergenic 30.0%
!!! TTTCAATGGTTTTTTGGAGT+TGG + chr1_2:48419287-48419306 None:intergenic 30.0%
GAAGAAATAAATGGAGAAGA+AGG - chr1_2:48419380-48419399 Msa0074180:CDS 30.0%
AATCCCATTCTTGAGAATTA+GGG + chr1_2:48419608-48419627 None:intergenic 30.0%
TAATCCCATTCTTGAGAATT+AGG + chr1_2:48419609-48419628 None:intergenic 30.0%
TTCCTGTTAAGAAAGTTTCT+TGG + chr1_2:48419682-48419701 None:intergenic 30.0%
TAACACTTCTACAGTTAGAT+TGG - chr1_2:48420175-48420194 Msa0074180:intron 30.0%
! GTTTTTCTTAACCAGAAGTT+AGG - chr1_2:48420221-48420240 Msa0074180:intron 30.0%
!!! AGTGGTTATGTTGATTTTCA+AGG - chr1_2:48420394-48420413 Msa0074180:CDS 30.0%
!! GATTTTCAAGGTTCAAACTT+TGG - chr1_2:48420406-48420425 Msa0074180:CDS 30.0%
CAATAGCTATTGTTCAAAGT+CGG + chr1_2:48420482-48420501 None:intergenic 30.0%
! AGTAGAGACACAGATTTTTA+TGG - chr1_2:48420543-48420562 Msa0074180:CDS 30.0%
! AGCTCATTTTCATTATGAAG+AGG - chr1_2:48420699-48420718 Msa0074180:five_prime_UTR 30.0%
! GCTCATTTTCATTATGAAGA+GGG - chr1_2:48420700-48420719 Msa0074180:five_prime_UTR 30.0%
GACAGTATTATTCTGTCTGT+GGG - chr1_2:48412749-48412768 Msa0074180:three_prime_UTR 35.0%
AGTGATAACTATAGTGATGG+AGG + chr1_2:48412911-48412930 None:intergenic 35.0%
TGCAGTGATAACTATAGTGA+TGG + chr1_2:48412914-48412933 None:intergenic 35.0%
CTAGTTGTTGTAGTTGTTGT+TGG + chr1_2:48413029-48413048 None:intergenic 35.0%
ACAACAACTACAACAACTAG+TGG - chr1_2:48413029-48413048 Msa0074180:three_prime_UTR 35.0%
!! CTTGACTTGGTAATTGTGTA+AGG + chr1_2:48413086-48413105 None:intergenic 35.0%
!! TGGCTCTAAAACAGTTATTC+AGG - chr1_2:48413285-48413304 Msa0074180:three_prime_UTR 35.0%
CGTTGAACACTTCAAAATTG+TGG - chr1_2:48413822-48413841 Msa0074180:intron 35.0%
CAAAATTGTGGCTAAGTACA+TGG - chr1_2:48413834-48413853 Msa0074180:intron 35.0%
!!! TTTGTGTCACTTACCAGTTT+TGG - chr1_2:48414036-48414055 Msa0074180:intron 35.0%
GATGAACTCAACAATCTTCA+AGG - chr1_2:48414163-48414182 Msa0074180:intron 35.0%
GGTATGCATAATGCATGTTA+TGG - chr1_2:48414193-48414212 Msa0074180:intron 35.0%
TTGATGCCAATAGTCTAGAT+TGG - chr1_2:48414243-48414262 Msa0074180:intron 35.0%
TTTAGCTGACATTGGATCAA+AGG - chr1_2:48414321-48414340 Msa0074180:intron 35.0%
TTAGCTGACATTGGATCAAA+GGG - chr1_2:48414322-48414341 Msa0074180:intron 35.0%
! GTGTTGGTATTTGAGAAGTA+GGG + chr1_2:48414396-48414415 None:intergenic 35.0%
! TGTGTTGGTATTTGAGAAGT+AGG + chr1_2:48414397-48414416 None:intergenic 35.0%
ACTTCTCAAATACCAACACA+AGG - chr1_2:48414397-48414416 Msa0074180:intron 35.0%
CTTCTCAAATACCAACACAA+GGG - chr1_2:48414398-48414417 Msa0074180:intron 35.0%
GTTTATTGAAATCCTTGAGG+TGG - chr1_2:48414545-48414564 Msa0074180:intron 35.0%
CATGCAACTTTCTATATGTG+AGG + chr1_2:48414643-48414662 None:intergenic 35.0%
TGAGTTTATTGAAATCCTCG+AGG - chr1_2:48414692-48414711 Msa0074180:intron 35.0%
CAAAATGACAGACAAAACAG+TGG + chr1_2:48414782-48414801 None:intergenic 35.0%
ACGATATTTAACAGGTTTGC+CGG - chr1_2:48414802-48414821 Msa0074180:intron 35.0%
!!! CATTGGAAGTGTTTTTGATC+CGG - chr1_2:48414847-48414866 Msa0074180:intron 35.0%
! GTTTTTGATCCGGATACAAA+CGG - chr1_2:48414857-48414876 Msa0074180:intron 35.0%
!! CTGTTTGCTGTTATAACAGA+TGG + chr1_2:48415216-48415235 None:intergenic 35.0%
!!! GTTGTTTTTTTCTGGTTTGC+TGG + chr1_2:48415246-48415265 None:intergenic 35.0%
! GTTTGGTTTAAGAATGGTGT+TGG + chr1_2:48415445-48415464 None:intergenic 35.0%
TAATGATTCAATTTGCGGAG+TGG + chr1_2:48415537-48415556 None:intergenic 35.0%
CGCCTAATTTATTTGTCCAT+TGG + chr1_2:48415667-48415686 None:intergenic 35.0%
AAGATTGCGTTATGTGTGAA+GGG + chr1_2:48415784-48415803 None:intergenic 35.0%
!! GAAAGCCAAATTCACTTTTG+AGG - chr1_2:48415832-48415851 Msa0074180:intron 35.0%
TCCTTGTATAAGAAGTTGGA+GGG + chr1_2:48415980-48415999 None:intergenic 35.0%
GAAGTCCTTGTATAAGAAGT+TGG + chr1_2:48415984-48416003 None:intergenic 35.0%
!! TTGGGAGAATGACTTGTTAA+GGG + chr1_2:48416095-48416114 None:intergenic 35.0%
!! TTTGGGAGAATGACTTGTTA+AGG + chr1_2:48416096-48416115 None:intergenic 35.0%
TCATTCTCCCAAACAAAAAG+AGG - chr1_2:48416103-48416122 Msa0074180:intron 35.0%
!! GAGATGTCCTCTTTTTGTTT+GGG + chr1_2:48416113-48416132 None:intergenic 35.0%
AATCAAAAGGAGGCTTATGT+GGG + chr1_2:48416184-48416203 None:intergenic 35.0%
CTCTTTATCCAATCAAAAGG+AGG + chr1_2:48416194-48416213 None:intergenic 35.0%
! TGGGGCAAATATGAGTTTTT+GGG + chr1_2:48416269-48416288 None:intergenic 35.0%
! ATGGGGCAAATATGAGTTTT+TGG + chr1_2:48416270-48416289 None:intergenic 35.0%
TTGATAGAAAAGTGGGGAAT+GGG + chr1_2:48416288-48416307 None:intergenic 35.0%
TCCGAACTTGATAGAAAAGT+GGG + chr1_2:48416295-48416314 None:intergenic 35.0%
TTCCGAACTTGATAGAAAAG+TGG + chr1_2:48416296-48416315 None:intergenic 35.0%
AGATAGGAATACTCTTTGGA+AGG + chr1_2:48416446-48416465 None:intergenic 35.0%
!! TCCAAAGAGTATTCCTATCT+TGG - chr1_2:48416446-48416465 Msa0074180:intron 35.0%
TCCAAGATAGGAATACTCTT+TGG + chr1_2:48416450-48416469 None:intergenic 35.0%
AATGGAGGTTAATCCAAGAT+AGG + chr1_2:48416462-48416481 None:intergenic 35.0%
TACTAGCGAAATGAAAATGG+AGG + chr1_2:48416477-48416496 None:intergenic 35.0%
GCTTACTAGCGAAATGAAAA+TGG + chr1_2:48416480-48416499 None:intergenic 35.0%
GTTTGTAAACCAAAAGAGGA+TGG + chr1_2:48416541-48416560 None:intergenic 35.0%
!! AAGTTTATGAGGCCATTTTG+AGG - chr1_2:48416639-48416658 Msa0074180:intron 35.0%
ATCGAGTCAGTCAAAAATAG+AGG - chr1_2:48416837-48416856 Msa0074180:intron 35.0%
ATCGAGTCAGTCAAAAATAG+AGG - chr1_2:48416837-48416856 Msa0074180:intron 35.0%
!!! CTTTTTTTCCTGCTTATTCG+AGG - chr1_2:48417022-48417041 Msa0074180:intron 35.0%
TAATCTAACCTCGAATAAGC+AGG + chr1_2:48417033-48417052 None:intergenic 35.0%
! GACTGACAGATTTCTGAAAA+TGG + chr1_2:48417066-48417085 None:intergenic 35.0%
CATTGAATAATAGGGCTGAA+TGG - chr1_2:48417127-48417146 Msa0074180:intron 35.0%
GCAAGTTATCATAAGCTACA+AGG + chr1_2:48417167-48417186 None:intergenic 35.0%
! ATATTGGCCTAGGAAAAAAC+AGG + chr1_2:48417284-48417303 None:intergenic 35.0%
! TTTTCCTAGGCCAATATTAG+AGG - chr1_2:48417287-48417306 Msa0074180:intron 35.0%
! TTAACCTCTAATATTGGCCT+AGG + chr1_2:48417294-48417313 None:intergenic 35.0%
! TAGAGGTTAATTTGATAGGG+GGG - chr1_2:48417304-48417323 Msa0074180:intron 35.0%
TAGTAGCATAGATCAAACTC+CGG - chr1_2:48417341-48417360 Msa0074180:intron 35.0%
!! ATGCTGAAGGAGTATTATGA+AGG + chr1_2:48417371-48417390 None:intergenic 35.0%
! GTATTCTAGTGGTTTGAGTT+GGG + chr1_2:48417394-48417413 None:intergenic 35.0%
TGTATTCTAGTGGTTTGAGT+TGG + chr1_2:48417395-48417414 None:intergenic 35.0%
AAACCACTAGAATACACCAT+GGG - chr1_2:48417399-48417418 Msa0074180:intron 35.0%
AGGCTCTTAAAGAGTCAATT+TGG + chr1_2:48417544-48417563 None:intergenic 35.0%
TCATCTAAAAAGCTTGAGGA+AGG - chr1_2:48417571-48417590 Msa0074180:intron 35.0%
CATCTAAAAAGCTTGAGGAA+GGG - chr1_2:48417572-48417591 Msa0074180:intron 35.0%
ATCTAAAAAGCTTGAGGAAG+GGG - chr1_2:48417573-48417592 Msa0074180:intron 35.0%
CCTAAGAGACAGTTGTAAAA+TGG + chr1_2:48417629-48417648 None:intergenic 35.0%
! CCATTTTACAACTGTCTCTT+AGG - chr1_2:48417626-48417645 Msa0074180:intron 35.0%
ACACTAATTCCCATGTTAAG+AGG - chr1_2:48417848-48417867 Msa0074180:intron 35.0%
TTGCTAAACTGTCTTCACTA+AGG - chr1_2:48417889-48417908 Msa0074180:intron 35.0%
TGCTAAACTGTCTTCACTAA+GGG - chr1_2:48417890-48417909 Msa0074180:intron 35.0%
ATATGAGATGCAGAAGAACA+GGG + chr1_2:48417947-48417966 None:intergenic 35.0%
AATATGAGATGCAGAAGAAC+AGG + chr1_2:48417948-48417967 None:intergenic 35.0%
CTAGTTAATGCAGAAAAGAG+GGG + chr1_2:48417980-48417999 None:intergenic 35.0%
CCTAGTTAATGCAGAAAAGA+GGG + chr1_2:48417981-48418000 None:intergenic 35.0%
TCCTAGTTAATGCAGAAAAG+AGG + chr1_2:48417982-48418001 None:intergenic 35.0%
ACTATGGGAAGACTTACATT+GGG + chr1_2:48418339-48418358 None:intergenic 35.0%
AGTGTTTAATCCCTTGACTA+TGG - chr1_2:48418390-48418409 Msa0074180:intron 35.0%
ATGCATGAACTTGAGAGATT+TGG + chr1_2:48418424-48418443 None:intergenic 35.0%
TATTACCTACCAATGCAATG+AGG + chr1_2:48418695-48418714 None:intergenic 35.0%
! TGCATTGGTAGGTAATATGT+AGG - chr1_2:48418698-48418717 Msa0074180:CDS 35.0%
GTGAGTTGTCTTGAGATTTA+GGG - chr1_2:48419020-48419039 Msa0074180:intron 35.0%
GACATAGTAGATAACCTAGA+AGG - chr1_2:48419121-48419140 Msa0074180:CDS 35.0%
AATTGGCTACAGCATACTTT+GGG + chr1_2:48419225-48419244 None:intergenic 35.0%
AAATTGGCTACAGCATACTT+TGG + chr1_2:48419226-48419245 None:intergenic 35.0%
TGCATGTTGATGCTGTAAAT+TGG + chr1_2:48419242-48419261 None:intergenic 35.0%
AAATAAATGGAGAAGAAGGG+AGG - chr1_2:48419384-48419403 Msa0074180:CDS 35.0%
AATAAATGGAGAAGAAGGGA+GGG - chr1_2:48419385-48419404 Msa0074180:CDS 35.0%
TTAGCCCTAATTCTCAAGAA+TGG - chr1_2:48419601-48419620 Msa0074180:intron 35.0%
TAGCCCTAATTCTCAAGAAT+GGG - chr1_2:48419602-48419621 Msa0074180:intron 35.0%
GTCCAAGAAACTTTCTTAAC+AGG - chr1_2:48419677-48419696 Msa0074180:intron 35.0%
ATTCGCTAGTCATGATAAGT+AGG + chr1_2:48419798-48419817 None:intergenic 35.0%
! ACAGTTAGATTGGTCAAACA+TGG - chr1_2:48420185-48420204 Msa0074180:intron 35.0%
! TTAGATTGGTCAAACATGGA+TGG - chr1_2:48420189-48420208 Msa0074180:intron 35.0%
ATGACAACAGTTACATTCAC+CGG + chr1_2:48420284-48420303 None:intergenic 35.0%
TACTATGACTATTCTTGCTG+TGG + chr1_2:48420313-48420332 None:intergenic 35.0%
ATTGTTCAAAGTCGGTAACT+CGG + chr1_2:48420474-48420493 None:intergenic 35.0%
CTTTACACATGTGGCATATT+TGG + chr1_2:48420634-48420653 None:intergenic 35.0%
AAAGTGTGACTTTACACATG+TGG + chr1_2:48420643-48420662 None:intergenic 35.0%
! TGTAAAGTCACACTTTTACC+TGG - chr1_2:48420647-48420666 Msa0074180:five_prime_UTR 35.0%
! GTAAAGTCACACTTTTACCT+GGG - chr1_2:48420648-48420667 Msa0074180:five_prime_UTR 35.0%
GGACAGTATTATTCTGTCTG+TGG - chr1_2:48412748-48412767 Msa0074180:three_prime_UTR 40.0%
ACTACGGTGATTCTGATGAA+TGG - chr1_2:48412778-48412797 Msa0074180:three_prime_UTR 40.0%
CTACGGTGATTCTGATGAAT+GGG - chr1_2:48412779-48412798 Msa0074180:three_prime_UTR 40.0%
! TGTGTTATGTTTGGGACAGT+TGG - chr1_2:48412883-48412902 Msa0074180:three_prime_UTR 40.0%
ACAACTACAACAACTAGTGG+TGG - chr1_2:48413032-48413051 Msa0074180:three_prime_UTR 40.0%
TTACCAAGTCAAGAGAAAGC+TGG - chr1_2:48413093-48413112 Msa0074180:three_prime_UTR 40.0%
!!! ATCCATTGCTTTTGGCTCTT+CGG - chr1_2:48414072-48414091 Msa0074180:intron 40.0%
CTGACAAGTATTCATCAGCA+TGG + chr1_2:48414143-48414162 None:intergenic 40.0%
CATGCTGATGAATACTTGTC+AGG - chr1_2:48414141-48414160 Msa0074180:intron 40.0%
AGCTAGCCAATCTAGACTAT+TGG + chr1_2:48414252-48414271 None:intergenic 40.0%
! GATTGGCTAGCTGAACTTAA+AGG - chr1_2:48414260-48414279 Msa0074180:intron 40.0%
TAGCTGACATTGGATCAAAG+GGG - chr1_2:48414323-48414342 Msa0074180:intron 40.0%
ACACAAAATCCCGTGATTCA+TGG - chr1_2:48414421-48414440 Msa0074180:intron 40.0%
AGACGATTACCATGAATCAC+GGG + chr1_2:48414433-48414452 None:intergenic 40.0%
CAGACGATTACCATGAATCA+CGG + chr1_2:48414434-48414453 None:intergenic 40.0%
GAAACAACTTTCTAGATGCG+AGG + chr1_2:48414497-48414516 None:intergenic 40.0%
! CAAGATCATTTTCCACCTCA+AGG + chr1_2:48414560-48414579 None:intergenic 40.0%
GTTTATTGAAATCCTCGAGG+TGG - chr1_2:48414695-48414714 Msa0074180:intron 40.0%
GCTGAAGTTTACGGTTTCAT+TGG - chr1_2:48414830-48414849 Msa0074180:intron 40.0%
CTCAGTAGTTACTTCTGTTG+AGG + chr1_2:48414978-48414997 None:intergenic 40.0%
GAGACAAAACAAGAACCTAC+AGG - chr1_2:48415060-48415079 Msa0074180:intron 40.0%
GAGTTTATCATGCAACCTGT+AGG + chr1_2:48415078-48415097 None:intergenic 40.0%
CAGCAGGGAACAATTACATA+AGG - chr1_2:48415172-48415191 Msa0074180:intron 40.0%
! TGTTATAACAGATGGGCTTC+TGG + chr1_2:48415208-48415227 None:intergenic 40.0%
GGTCTCTTTCTGTCTGATAT+CGG + chr1_2:48415268-48415287 None:intergenic 40.0%
AAACAGAAAAAACCTGAGGC+TGG - chr1_2:48415301-48415320 Msa0074180:intron 40.0%
!!! CTGTTTCCTGCTGTTTTTTG+CGG + chr1_2:48415338-48415357 None:intergenic 40.0%
! TTAATGGAGCTGCTTTGGTA+AGG + chr1_2:48415399-48415418 None:intergenic 40.0%
TACCAAAGCAGCTCCATTAA+CGG - chr1_2:48415399-48415418 Msa0074180:CDS 40.0%
CATTCTTAAACCAAACACGC+CGG - chr1_2:48415449-48415468 Msa0074180:intron 40.0%
TGGATGTTGAGTCGTATGAA+GGG + chr1_2:48415476-48415495 None:intergenic 40.0%
ACAAATAAGAAGGTCCGCAT+CGG + chr1_2:48415623-48415642 None:intergenic 40.0%
! TATTTGTCCATTGGGAGTGT+TGG + chr1_2:48415658-48415677 None:intergenic 40.0%
CAAGATTGCGTTATGTGTGA+AGG + chr1_2:48415785-48415804 None:intergenic 40.0%
GAACTATATCAGAGGAGCAA+GGG + chr1_2:48415940-48415959 None:intergenic 40.0%
AGAACTATATCAGAGGAGCA+AGG + chr1_2:48415941-48415960 None:intergenic 40.0%
ACCCTCCAACTTCTTATACA+AGG - chr1_2:48415976-48415995 Msa0074180:intron 40.0%
GTCCTTGTATAAGAAGTTGG+AGG + chr1_2:48415981-48416000 None:intergenic 40.0%
CTTGTTAAGGGAGTTGTATG+CGG + chr1_2:48416083-48416102 None:intergenic 40.0%
! GGAGATGTCCTCTTTTTGTT+TGG + chr1_2:48416114-48416133 None:intergenic 40.0%
!! AGTGCAATTGGTCGTTTTCT+TGG + chr1_2:48416135-48416154 None:intergenic 40.0%
TTAATACTCCGGAGTGCAAT+TGG + chr1_2:48416147-48416166 None:intergenic 40.0%
CAATCAAAAGGAGGCTTATG+TGG + chr1_2:48416185-48416204 None:intergenic 40.0%
! CACATAAGCCTCCTTTTGAT+TGG - chr1_2:48416183-48416202 Msa0074180:intron 40.0%
TGATAGAAAAGTGGGGAATG+GGG + chr1_2:48416287-48416306 None:intergenic 40.0%
CTTGATAGAAAAGTGGGGAA+TGG + chr1_2:48416289-48416308 None:intergenic 40.0%
CCGAACTTGATAGAAAAGTG+GGG + chr1_2:48416294-48416313 None:intergenic 40.0%
!! CCCCACTTTTCTATCAAGTT+CGG - chr1_2:48416291-48416310 Msa0074180:intron 40.0%
AGTATGGTACCTCAAGTGTA+GGG + chr1_2:48416408-48416427 None:intergenic 40.0%
AAGTATGGTACCTCAAGTGT+AGG + chr1_2:48416409-48416428 None:intergenic 40.0%
! TAGGAATACTCTTTGGAAGG+AGG + chr1_2:48416443-48416462 None:intergenic 40.0%
! AAAAGAGGATGGTGGTTTAG+GGG + chr1_2:48416530-48416549 None:intergenic 40.0%
! CAAAAGAGGATGGTGGTTTA+GGG + chr1_2:48416531-48416550 None:intergenic 40.0%
TGTAAACCAAAAGAGGATGG+TGG + chr1_2:48416538-48416557 None:intergenic 40.0%
ATCGGAAGATAAATTGGGTG+AGG + chr1_2:48416573-48416592 None:intergenic 40.0%
TTTCCTAGTTATGTGTGCAG+AGG + chr1_2:48416621-48416640 None:intergenic 40.0%
!! TTTATGAGGCCATTTTGAGG+AGG - chr1_2:48416642-48416661 Msa0074180:intron 40.0%
!! TTATGAGGCCATTTTGAGGA+GGG - chr1_2:48416643-48416662 Msa0074180:intron 40.0%
!! ACTGACTCGATCCTTCAAAA+AGG + chr1_2:48416828-48416847 None:intergenic 40.0%
!! ACTGACTCGATCCTTCAAAA+AGG + chr1_2:48416828-48416847 None:intergenic 40.0%
TCATATTCACGCCCTTATTG+AGG + chr1_2:48417189-48417208 None:intergenic 40.0%
CTTATCTTGCTTCAACACAC+TGG + chr1_2:48417222-48417241 None:intergenic 40.0%
! AGAGGTTAATTTGATAGGGG+GGG - chr1_2:48417305-48417324 Msa0074180:intron 40.0%
!! CTGAAGGAGTATTATGAAGG+AGG + chr1_2:48417368-48417387 None:intergenic 40.0%
CAAACCACTAGAATACACCA+TGG - chr1_2:48417398-48417417 Msa0074180:intron 40.0%
TTTCCCATGGTGTATTCTAG+TGG + chr1_2:48417405-48417424 None:intergenic 40.0%
AAAAACTACCTATGAGGCGT+CGG + chr1_2:48417703-48417722 None:intergenic 40.0%
AGTGAAGACAGTTTAGCAAG+TGG + chr1_2:48417888-48417907 None:intergenic 40.0%
GAAGAACAGGGCCATTATAT+GGG + chr1_2:48417935-48417954 None:intergenic 40.0%
AGAAGAACAGGGCCATTATA+TGG + chr1_2:48417936-48417955 None:intergenic 40.0%
TTAATGCAGAAAAGAGGGGA+GGG + chr1_2:48417976-48417995 None:intergenic 40.0%
! CCCTCTTTTCTGCATTAACT+AGG - chr1_2:48417978-48417997 Msa0074180:intron 40.0%
GACTATGGGAAGACTTACAT+TGG + chr1_2:48418340-48418359 None:intergenic 40.0%
GCAAGTCACAAGTTAATGCA+GGG + chr1_2:48418478-48418497 None:intergenic 40.0%
AGCAAGTCACAAGTTAATGC+AGG + chr1_2:48418479-48418498 None:intergenic 40.0%
TTCAAGTAATTAGGGGCTTG+AGG + chr1_2:48418519-48418538 None:intergenic 40.0%
CAGCAACTAGATTCAAACTC+AGG + chr1_2:48418663-48418682 None:intergenic 40.0%
GAGTTTGAATCTAGTTGCTG+AGG - chr1_2:48418663-48418682 Msa0074180:CDS 40.0%
AGCTCAGAGAGAACTTATAG+AGG + chr1_2:48418726-48418745 None:intergenic 40.0%
TAAGTTCTCTCTGAGCTTTG+AGG - chr1_2:48418729-48418748 Msa0074180:intron 40.0%
AAATGTTAGCCGTCAACACT+CGG - chr1_2:48418952-48418971 Msa0074180:intron 40.0%
AAATTAGGGCTAATCTGACC+TGG - chr1_2:48418998-48419017 Msa0074180:intron 40.0%
AAATCTCAAGACAACTCACC+AGG + chr1_2:48419019-48419038 None:intergenic 40.0%
GGTGAGTTGTCTTGAGATTT+AGG - chr1_2:48419019-48419038 Msa0074180:intron 40.0%
! GTGGGTTGTCTTGAGAATTA+GGG - chr1_2:48419056-48419075 Msa0074180:intron 40.0%
GCGGCACAAAAAAATAAACG+AGG + chr1_2:48419184-48419203 None:intergenic 40.0%
!!! TTTTGGAGTTGGAGGCAAAT+TGG + chr1_2:48419276-48419295 None:intergenic 40.0%
!!! CAATGGTTTTTTGGAGTTGG+AGG + chr1_2:48419284-48419303 None:intergenic 40.0%
! TCTGAGGCCATAGATTTCAA+TGG + chr1_2:48419301-48419320 None:intergenic 40.0%
AGTGTCATGTTGCTGCTAAA+GGG + chr1_2:48419345-48419364 None:intergenic 40.0%
CAACATGACACTCTTGAGAA+AGG - chr1_2:48419353-48419372 Msa0074180:CDS 40.0%
CCTAATTGTAATCGAGGTCT+TGG + chr1_2:48419427-48419446 None:intergenic 40.0%
CCAAGACCTCGATTACAATT+AGG - chr1_2:48419424-48419443 Msa0074180:CDS 40.0%
CTTCTGCCTAATTGTAATCG+AGG + chr1_2:48419433-48419452 None:intergenic 40.0%
GACACAGTAGATAACCTAGA+AGG + chr1_2:48419507-48419526 None:intergenic 40.0%
! GTGGGTTGTCTTGAGAATTA+GGG + chr1_2:48419056-48419075 None:intergenic 40.0%
GGATTAAATCCACTGAGTGT+TGG - chr1_2:48419623-48419642 Msa0074180:intron 40.0%
AGAAAAGAATCCCTTCCACT+GGG - chr1_2:48419654-48419673 Msa0074180:intron 40.0%
GACTATCTCATCTAGTCATC+TGG - chr1_2:48419818-48419837 Msa0074180:intron 40.0%
! CTAGTCATCTGGTTCAATCT+CGG - chr1_2:48419829-48419848 Msa0074180:intron 40.0%
TTGCTTCGTTGTTCAGAAGA+AGG - chr1_2:48419972-48419991 Msa0074180:intron 40.0%
AAATTGCTAGTGGTCAGTAG+TGG + chr1_2:48420079-48420098 None:intergenic 40.0%
CCAAGTCAACAAATTGCTAG+TGG + chr1_2:48420089-48420108 None:intergenic 40.0%
!! CCACTAGCAATTTGTTGACT+TGG - chr1_2:48420086-48420105 Msa0074180:CDS 40.0%
TCAGCTGTAAAGTGTAAAGC+CGG - chr1_2:48420262-48420281 Msa0074180:CDS 40.0%
TGGAGATGCTTCTGGTAAGA+AGG - chr1_2:48413052-48413071 Msa0074180:three_prime_UTR 45.0%
AGACCAGCTTTCTCTTGACT+TGG + chr1_2:48413099-48413118 None:intergenic 45.0%
! GGATGAATAGCTTTGCGCTT+AGG + chr1_2:48413502-48413521 None:intergenic 45.0%
AAAGCAATGGATGCTGGTAG+TGG + chr1_2:48414064-48414083 None:intergenic 45.0%
! CTACCAGCATCCATTGCTTT+TGG - chr1_2:48414064-48414083 Msa0074180:intron 45.0%
CAAATACCCTTCTACCTGCA+GGG - chr1_2:48414095-48414114 Msa0074180:intron 45.0%
! GGATTTTGTGTCCCTTGTGT+TGG + chr1_2:48414412-48414431 None:intergenic 45.0%
CCGTAAACTTCAGCAAAGTC+CGG + chr1_2:48414824-48414843 None:intergenic 45.0%
CCGGACTTTGCTGAAGTTTA+CGG - chr1_2:48414821-48414840 Msa0074180:intron 45.0%
TTTCCTTCAGCTTCTGCACA+TGG + chr1_2:48414883-48414902 None:intergenic 45.0%
TGTGCAGAAGCTGAAGGAAA+TGG - chr1_2:48414883-48414902 Msa0074180:intron 45.0%
AACAAAAACTCGCGATCAGC+AGG - chr1_2:48415156-48415175 Msa0074180:intron 45.0%
ACAAAAACTCGCGATCAGCA+GGG - chr1_2:48415157-48415176 Msa0074180:intron 45.0%
!!! TTCTGTTTTTTGCTGCTGGC+TGG + chr1_2:48415289-48415308 None:intergenic 45.0%
ACAGAACCGCAAAAAACAGC+AGG - chr1_2:48415329-48415348 Msa0074180:intron 45.0%
ATCCGTTAATGGAGCTGCTT+TGG + chr1_2:48415404-48415423 None:intergenic 45.0%
! AGCAGCTCCATTAACGGATA+AGG - chr1_2:48415405-48415424 Msa0074180:intron 45.0%
! CGGCGTGTTTGGTTTAAGAA+TGG + chr1_2:48415451-48415470 None:intergenic 45.0%
GGATGTTGAGTCGTATGAAG+GGG + chr1_2:48415475-48415494 None:intergenic 45.0%
GTGGATGTTGAGTCGTATGA+AGG + chr1_2:48415477-48415496 None:intergenic 45.0%
TGATTCAATTTGCGGAGTGG+CGG + chr1_2:48415534-48415553 None:intergenic 45.0%
AAATCAACCGGTAACCGATG+CGG - chr1_2:48415606-48415625 Msa0074180:intron 45.0%
TGGGGCTGAGACAAATAAGA+AGG + chr1_2:48415633-48415652 None:intergenic 45.0%
!! TCCATTGGGAGTGTTGGATT+GGG + chr1_2:48415652-48415671 None:intergenic 45.0%
ATTCACTGTGTTTGCTTCCG+AGG + chr1_2:48415734-48415753 None:intergenic 45.0%
GTGTGAAGGGATGTTGGAAT+CGG + chr1_2:48415771-48415790 None:intergenic 45.0%
CGTTATGTGTGAAGGGATGT+TGG + chr1_2:48415777-48415796 None:intergenic 45.0%
TCTATCACGAAGAAGCTTCC+AGG - chr1_2:48415859-48415878 Msa0074180:intron 45.0%
! GAGAGCGCAACAACTTTAGA+CGG - chr1_2:48415881-48415900 Msa0074180:intron 45.0%
TTCCTCCATTTGGAAAAGCC+CGG + chr1_2:48415909-48415928 None:intergenic 45.0%
TATATCAGAGGAGCAAGGGA+GGG + chr1_2:48415936-48415955 None:intergenic 45.0%
AGAGGCGAGAACTATATCAG+AGG + chr1_2:48415948-48415967 None:intergenic 45.0%
! GTTGGAGGGTATAATGCTAG+AGG + chr1_2:48415966-48415985 None:intergenic 45.0%
!!! GGAAGAGAGTGGTGCTTTTT+TGG + chr1_2:48416008-48416027 None:intergenic 45.0%
!! CGGATTTGGAAGGCTTTAGA+GGG + chr1_2:48416063-48416082 None:intergenic 45.0%
GAGTTGTATGCGGATTTGGA+AGG + chr1_2:48416073-48416092 None:intergenic 45.0%
AAGGGAGTTGTATGCGGATT+TGG + chr1_2:48416077-48416096 None:intergenic 45.0%
GAAAACGACCAATTGCACTC+CGG - chr1_2:48416136-48416155 Msa0074180:intron 45.0%
CTTGGGGACTCTTAATACTC+CGG + chr1_2:48416158-48416177 None:intergenic 45.0%
!!! TGAGTTTTTGGGATGTGGCT+TGG + chr1_2:48416258-48416277 None:intergenic 45.0%
TGGAGGTTGAGGATTACACT+TGG + chr1_2:48416381-48416400 None:intergenic 45.0%
GTATGGTACCTCAAGTGTAG+GGG + chr1_2:48416407-48416426 None:intergenic 45.0%
! TACTCTTTGGAAGGAGGTGT+TGG + chr1_2:48416437-48416456 None:intergenic 45.0%
! CCAAAAGAGGATGGTGGTTT+AGG + chr1_2:48416532-48416551 None:intergenic 45.0%
! CCTAAACCACCATCCTCTTT+TGG - chr1_2:48416529-48416548 Msa0074180:intron 45.0%
AAATTGGGTGAGGTGGAGTT+TGG + chr1_2:48416563-48416582 None:intergenic 45.0%
GGAAGATAAATTGGGTGAGG+TGG + chr1_2:48416570-48416589 None:intergenic 45.0%
CTTCCTCTGCACACATAACT+AGG - chr1_2:48416615-48416634 Msa0074180:intron 45.0%
! GAGGTTAATTTGATAGGGGG+GGG - chr1_2:48417306-48417325 Msa0074180:intron 45.0%
! GGAGTATTATGAAGGAGGTC+CGG + chr1_2:48417363-48417382 None:intergenic 45.0%
GTTAATGCAGAAAAGAGGGG+AGG + chr1_2:48417977-48417996 None:intergenic 45.0%
GGATTCAGAGCCATAGTCAA+GGG + chr1_2:48418403-48418422 None:intergenic 45.0%
TGGATTCAGAGCCATAGTCA+AGG + chr1_2:48418404-48418423 None:intergenic 45.0%
TGAATCTAGTTGCTGAGGAG+AGG - chr1_2:48418668-48418687 Msa0074180:CDS 45.0%
!! CTAAATCCACCGAGTGTTGA+CGG + chr1_2:48418964-48418983 None:intergenic 45.0%
! GATTTAGGGCTAATCTGACC+TGG - chr1_2:48419034-48419053 Msa0074180:intron 45.0%
AATTCTCAAGACAACCCACC+AGG + chr1_2:48419573-48419592 None:intergenic 45.0%
!! GGTGGGTTGTCTTGAGAATT+AGG - chr1_2:48419055-48419074 Msa0074180:intron 45.0%
GAATTAGGGCTAATCTGAGC+TGG - chr1_2:48419070-48419089 Msa0074180:intron 45.0%
AATCTGAGCTGGTTGTGTGA+TGG - chr1_2:48419081-48419100 Msa0074180:intron 45.0%
ATCTGAGCTGGTTGTGTGAT+GGG - chr1_2:48419082-48419101 Msa0074180:intron 45.0%
! TTGTGTGATGGGAGAGTCAT+GGG - chr1_2:48419093-48419112 Msa0074180:intron 45.0%
CCTTTCAAATTCGGCCTTCT+AGG + chr1_2:48419490-48419509 None:intergenic 45.0%
CCTAGAAGGCCGAATTTGAA+AGG - chr1_2:48419135-48419154 Msa0074180:CDS 45.0%
! TGGGAGCCTATTGATTACAG+CGG + chr1_2:48419206-48419225 None:intergenic 45.0%
GAGTGTCATGTTGCTGCTAA+AGG + chr1_2:48419346-48419365 None:intergenic 45.0%
! ATTTGAAAGGCACGACGACA+TGG + chr1_2:48419480-48419499 None:intergenic 45.0%
GTCGTCGTGCCTTTCAAATT+CGG - chr1_2:48419481-48419500 Msa0074180:intron 45.0%
CCTAGAAGGCCGAATTTGAA+AGG + chr1_2:48419135-48419154 None:intergenic 45.0%
CCTTTCAAATTCGGCCTTCT+AGG - chr1_2:48419490-48419509 Msa0074180:intron 45.0%
! TTGTGTGATGGGAGAGTCAT+GGG + chr1_2:48419093-48419112 None:intergenic 45.0%
ATCTGAGCTGGTTGTGTGAT+GGG + chr1_2:48419082-48419101 None:intergenic 45.0%
AATCTGAGCTGGTTGTGTGA+TGG + chr1_2:48419081-48419100 None:intergenic 45.0%
GAATTAGGGCTAATCTGAGC+TGG + chr1_2:48419070-48419089 None:intergenic 45.0%
!! GGTGGGTTGTCTTGAGAATT+AGG + chr1_2:48419055-48419074 None:intergenic 45.0%
AATTCTCAAGACAACCCACC+AGG - chr1_2:48419573-48419592 Msa0074180:intron 45.0%
GAATTAGGGCTAATCTGACC+TGG + chr1_2:48419594-48419613 None:intergenic 45.0%
CAGAAAAGAATCCCTTCCAC+TGG - chr1_2:48419653-48419672 Msa0074180:intron 45.0%
GAAAAGAATCCCTTCCACTG+GGG - chr1_2:48419655-48419674 Msa0074180:intron 45.0%
GGCAGAAGATCAAGAAACTG+AGG + chr1_2:48419777-48419796 None:intergenic 45.0%
! TCTGGTTCAATCTCGGACTA+AGG - chr1_2:48419836-48419855 Msa0074180:intron 45.0%
CAAACATGGATGGAAGACTG+AGG - chr1_2:48420199-48420218 Msa0074180:intron 45.0%
ACACTCTCATGCCTAACTTC+TGG + chr1_2:48420235-48420254 None:intergenic 45.0%
TTCAAAGTCGGTAACTCGGT+TGG + chr1_2:48420470-48420489 None:intergenic 45.0%
TGAAAAAGGTCATTTCGCCC+AGG + chr1_2:48420668-48420687 None:intergenic 45.0%
!! TTTATTAAAGAATAATTTAA+TGG + chr1_2:48419722-48419741 None:intergenic 5.0%
!! TTAAATTATTCTTTAATAAA+AGG - chr1_2:48419722-48419741 Msa0074180:intron 5.0%
TGTCTGTGGGCACAACACTA+CGG - chr1_2:48412762-48412781 Msa0074180:three_prime_UTR 50.0%
! ACTAGTGGTGGAGATGCTTC+TGG - chr1_2:48413044-48413063 Msa0074180:three_prime_UTR 50.0%
! ATAGCTTTGCGCTTAGGACG+AGG + chr1_2:48413496-48413515 None:intergenic 50.0%
GAGCCAAAAGCAATGGATGC+TGG + chr1_2:48414070-48414089 None:intergenic 50.0%
TGCCGAAGAGCCAAAAGCAA+TGG + chr1_2:48414077-48414096 None:intergenic 50.0%
GCAAATACCCTTCTACCTGC+AGG - chr1_2:48414094-48414113 Msa0074180:intron 50.0%
GACATACCCTGCAGGTAGAA+GGG + chr1_2:48414104-48414123 None:intergenic 50.0%
TGACATACCCTGCAGGTAGA+AGG + chr1_2:48414105-48414124 None:intergenic 50.0%
TCAAAGGGGATCAGCAACAG+CGG - chr1_2:48414337-48414356 Msa0074180:intron 50.0%
ATCAGCAACAGCGGTCTTAG+TGG - chr1_2:48414346-48414365 Msa0074180:intron 50.0%
TCATGGTAATCGTCTGCGAC+AGG - chr1_2:48414438-48414457 Msa0074180:intron 50.0%
CAAGATCATTTGCCACCTCG+AGG + chr1_2:48414710-48414729 None:intergenic 50.0%
TGCACATGGCCGTTTGTATC+CGG + chr1_2:48414869-48414888 None:intergenic 50.0%
GTTCTGTATATGCCAGCCTC+AGG + chr1_2:48415316-48415335 None:intergenic 50.0%
! ATGGAGCTGCTTTGGTAAGG+CGG + chr1_2:48415396-48415415 None:intergenic 50.0%
!! GAGGGTGCCTTATCCGTTAA+TGG + chr1_2:48415415-48415434 None:intergenic 50.0%
! TAACGGATAAGGCACCCTCT+CGG - chr1_2:48415416-48415435 Msa0074180:intron 50.0%
!! AATGGTGTTGGTGTCCGAGA+GGG + chr1_2:48415433-48415452 None:intergenic 50.0%
!! TTCAGGTTTTGTCGTGGAGG+TGG + chr1_2:48415496-48415515 None:intergenic 50.0%
!! CGATTCAGGTTTTGTCGTGG+AGG + chr1_2:48415499-48415518 None:intergenic 50.0%
!! AGGCGATTCAGGTTTTGTCG+TGG + chr1_2:48415502-48415521 None:intergenic 50.0%
!! GCATCGGTTACCGGTTGATT+TGG + chr1_2:48415607-48415626 None:intergenic 50.0%
!! CCATTGGGAGTGTTGGATTG+GGG + chr1_2:48415651-48415670 None:intergenic 50.0%
!! GTCCATTGGGAGTGTTGGAT+TGG + chr1_2:48415653-48415672 None:intergenic 50.0%
GCAAGGATTGTTGAGGTGGA+TGG + chr1_2:48415707-48415726 None:intergenic 50.0%
TGTGGCAAGGATTGTTGAGG+TGG + chr1_2:48415711-48415730 None:intergenic 50.0%
AGGTGTGGCAAGGATTGTTG+AGG + chr1_2:48415714-48415733 None:intergenic 50.0%
CAACAATCCTTGCCACACCT+CGG - chr1_2:48415714-48415733 Msa0074180:intron 50.0%
ACGCAATCTTGAGAAGCCTC+TGG - chr1_2:48415794-48415813 Msa0074180:intron 50.0%
CAATCTTGAGAAGCCTCTGG+AGG - chr1_2:48415797-48415816 Msa0074180:intron 50.0%
CAGACATGTGTTACCTCCAG+AGG + chr1_2:48415813-48415832 None:intergenic 50.0%
CTAAAGTTGTTGCGCTCTCC+TGG + chr1_2:48415880-48415899 None:intergenic 50.0%
GCAACAACTTTAGACGGTGC+CGG - chr1_2:48415887-48415906 Msa0074180:intron 50.0%
CAACAACTTTAGACGGTGCC+GGG - chr1_2:48415888-48415907 Msa0074180:intron 50.0%
!!! GGAGGGTGTTTTCCTCCATT+TGG + chr1_2:48415919-48415938 None:intergenic 50.0%
CTATATCAGAGGAGCAAGGG+AGG + chr1_2:48415937-48415956 None:intergenic 50.0%
CGTTGGAAGTTGGAAGAGAG+TGG + chr1_2:48416019-48416038 None:intergenic 50.0%
! AGATGTGTGGCGTTGGAAGT+TGG + chr1_2:48416029-48416048 None:intergenic 50.0%
TAGACGAAGATGTGTGGCGT+TGG + chr1_2:48416036-48416055 None:intergenic 50.0%
GGTCTCTAGACGAAGATGTG+TGG + chr1_2:48416042-48416061 None:intergenic 50.0%
! GCGGATTTGGAAGGCTTTAG+AGG + chr1_2:48416064-48416083 None:intergenic 50.0%
AGGCTTATGTGGGTGACTTG+GGG + chr1_2:48416174-48416193 None:intergenic 50.0%
GAGGCTTATGTGGGTGACTT+GGG + chr1_2:48416175-48416194 None:intergenic 50.0%
!!! TTTTGGGATGTGGCTTGGAG+AGG + chr1_2:48416253-48416272 None:intergenic 50.0%
!! GTGGAGGGATTTGGTGTCTT+TGG + chr1_2:48416338-48416357 None:intergenic 50.0%
! TACCTCAAGTGTAGGGGTGT+TGG + chr1_2:48416401-48416420 None:intergenic 50.0%
!! GAGGTGTTGGTGGAGAAGTA+TGG + chr1_2:48416424-48416443 None:intergenic 50.0%
!! TCTTTGGAAGGAGGTGTTGG+TGG + chr1_2:48416434-48416453 None:intergenic 50.0%
!!! GGAAGCGCCTGTTTTTTCCT+AGG - chr1_2:48417274-48417293 Msa0074180:intron 50.0%
!! GGTTTGAGTTGGGATGCTGA+AGG + chr1_2:48417384-48417403 None:intergenic 50.0%
! GGCTAGACAAGTTGACAGTG+AGG + chr1_2:48418140-48418159 None:intergenic 50.0%
AGGAGAGGACCTCATTGCAT+TGG - chr1_2:48418683-48418702 Msa0074180:CDS 50.0%
! GAGGACCTCATTGCATTGGT+AGG - chr1_2:48418687-48418706 Msa0074180:CDS 50.0%
TTCTCCGATCCTAGTAACCC+TGG - chr1_2:48418754-48418773 Msa0074180:intron 50.0%
TCTCCGATCCTAGTAACCCT+GGG - chr1_2:48418755-48418774 Msa0074180:intron 50.0%
AGTCCCAGGGTTACTAGGAT+CGG + chr1_2:48418761-48418780 None:intergenic 50.0%
AGTTGAGTCCCAGGGTTACT+AGG + chr1_2:48418766-48418785 None:intergenic 50.0%
!! TTTTCGCGAGTTGAGTCCCA+GGG + chr1_2:48418774-48418793 None:intergenic 50.0%
TTAGGGCTAATCTGACCTGG+TGG - chr1_2:48419001-48419020 Msa0074180:intron 50.0%
TAGGGCTAATCTGACCTGGT+GGG - chr1_2:48419002-48419021 Msa0074180:intron 50.0%
! GTTGTGTGATGGGAGAGTCA+TGG - chr1_2:48419092-48419111 Msa0074180:intron 50.0%
AACGAGGTGATCTTCGTCCA+TGG + chr1_2:48419168-48419187 None:intergenic 50.0%
! GAGCCTATTGATTACAGCGG+CGG + chr1_2:48419203-48419222 None:intergenic 50.0%
AGTTGGAGGCAAATTGGCGT+TGG + chr1_2:48419270-48419289 None:intergenic 50.0%
AATGGAGAAGAAGGGAGGGA+AGG - chr1_2:48419389-48419408 Msa0074180:CDS 50.0%
!! AGGCAGAAGCACTCACGAAA+AGG - chr1_2:48419444-48419463 Msa0074180:CDS 50.0%
! GTTGTGTGATGGGAGAGTCA+TGG + chr1_2:48419092-48419111 None:intergenic 50.0%
TAGGGCTAATCTGACCTGGT+GGG + chr1_2:48419002-48419021 None:intergenic 50.0%
TTAGGGCTAATCTGACCTGG+TGG + chr1_2:48419001-48419020 None:intergenic 50.0%
TGTTAGCAGCCAACACTCAG+TGG + chr1_2:48419635-48419654 None:intergenic 50.0%
TTTCTTGGACCCCAGTGGAA+GGG + chr1_2:48419667-48419686 None:intergenic 50.0%
GAAAGTTTCTTGGACCCCAG+TGG + chr1_2:48419672-48419691 None:intergenic 50.0%
!! GCTGGTAGTGGCACCAAAAC+TGG + chr1_2:48414052-48414071 None:intergenic 55.0%
TACCTGCAGGGTATGTCACG+TGG - chr1_2:48414107-48414126 Msa0074180:intron 55.0%
ACCTGCAGGGTATGTCACGT+GGG - chr1_2:48414108-48414127 Msa0074180:intron 55.0%
CTTTGGTAAGGCGGAGGTTG+AGG + chr1_2:48415387-48415406 None:intergenic 55.0%
!! GAATGGTGTTGGTGTCCGAG+AGG + chr1_2:48415434-48415453 None:intergenic 55.0%
GTTGAGTCGTATGAAGGGGC+CGG + chr1_2:48415471-48415490 None:intergenic 55.0%
GGAGTTAGTGGAGGCGATTC+AGG + chr1_2:48415513-48415532 None:intergenic 55.0%
!! CGCGGTTTGGTGCATTTGGA+GGG + chr1_2:48415579-48415598 None:intergenic 55.0%
CCTCCAAATGCACCAAACCG+CGG - chr1_2:48415577-48415596 Msa0074180:intron 55.0%
!! ATGCCGCGGTTTGGTGCATT+TGG + chr1_2:48415583-48415602 None:intergenic 55.0%
! TGATTTGGCATGCCGCGGTT+TGG + chr1_2:48415592-48415611 None:intergenic 55.0%
!! AGAAGGTCCGCATCGGTTAC+CGG + chr1_2:48415616-48415635 None:intergenic 55.0%
CCCCAATCCAACACTCCCAA+TGG - chr1_2:48415648-48415667 Msa0074180:intron 55.0%
TTTGCTTCCGAGGTGTGGCA+AGG + chr1_2:48415724-48415743 None:intergenic 55.0%
CTGTGTTTGCTTCCGAGGTG+TGG + chr1_2:48415729-48415748 None:intergenic 55.0%
! TGCCGGGCTTTTCCAAATGG+AGG - chr1_2:48415904-48415923 Msa0074180:intron 55.0%
GGAGGCTTATGTGGGTGACT+TGG + chr1_2:48416176-48416195 None:intergenic 55.0%
! GTTGCGTTGGTGGAGGGATT+TGG + chr1_2:48416347-48416366 None:intergenic 55.0%
! GCATGTGTTGCGTTGGTGGA+GGG + chr1_2:48416353-48416372 None:intergenic 55.0%
! TGCATGTGTTGCGTTGGTGG+AGG + chr1_2:48416354-48416373 None:intergenic 55.0%
CAGTGCATGTGTTGCGTTGG+TGG + chr1_2:48416357-48416376 None:intergenic 55.0%
CACCAACGCAACACATGCAC+TGG - chr1_2:48416355-48416374 Msa0074180:intron 55.0%
!! TGTAGGGGTGTTGGAGGTTG+AGG + chr1_2:48416392-48416411 None:intergenic 55.0%
!! CTCAAGTGTAGGGGTGTTGG+AGG + chr1_2:48416398-48416417 None:intergenic 55.0%
CTCCAACACCCCTACACTTG+AGG - chr1_2:48416396-48416415 Msa0074180:intron 55.0%
! GGATGGTGGTTTAGGGGTGA+GGG + chr1_2:48416524-48416543 None:intergenic 55.0%
! AGGATGGTGGTTTAGGGGTG+AGG + chr1_2:48416525-48416544 None:intergenic 55.0%
TCACTAAGCCGACGCCTCAT+AGG - chr1_2:48417692-48417711 Msa0074180:intron 55.0%
!! GTTTTCGCGAGTTGAGTCCC+AGG + chr1_2:48418775-48418794 None:intergenic 55.0%
TGTTAGCCGTCAACACTCGG+TGG - chr1_2:48418955-48418974 Msa0074180:intron 55.0%
GGCGTCGCGCCTTTCAAATT+CGG + chr1_2:48419147-48419166 None:intergenic 55.0%
! ATTTGAAAGGCGCGACGCCA+TGG - chr1_2:48419148-48419167 Msa0074180:CDS 55.0%
GTGCCGCCGCTGTAATCAAT+AGG - chr1_2:48419197-48419216 Msa0074180:intron 55.0%
GTTTCTTGGACCCCAGTGGA+AGG + chr1_2:48419668-48419687 None:intergenic 55.0%
TGCGCTTAGGACGAGGAGGA+GGG + chr1_2:48413489-48413508 None:intergenic 60.0%
TTGCGCTTAGGACGAGGAGG+AGG + chr1_2:48413490-48413509 None:intergenic 60.0%
GCTTTGCGCTTAGGACGAGG+AGG + chr1_2:48413493-48413512 None:intergenic 60.0%
TCCCACGTGACATACCCTGC+AGG + chr1_2:48414112-48414131 None:intergenic 60.0%
CGGCCATGTGCAGAAGCTGA+AGG - chr1_2:48414877-48414896 Msa0074180:intron 60.0%
GAGGTTGAGGCTGGGGTATG+CGG + chr1_2:48415374-48415393 None:intergenic 60.0%
TAAGGCGGAGGTTGAGGCTG+GGG + chr1_2:48415381-48415400 None:intergenic 60.0%
GTAAGGCGGAGGTTGAGGCT+GGG + chr1_2:48415382-48415401 None:intergenic 60.0%
! GAGCTGCTTTGGTAAGGCGG+AGG + chr1_2:48415393-48415412 None:intergenic 60.0%
TATGAAGGGGCCGGCGTGTT+TGG + chr1_2:48415462-48415481 None:intergenic 60.0%
! TTGCGGAGTGGCGGAGTTAG+TGG + chr1_2:48415525-48415544 None:intergenic 60.0%
!! CCGCGGTTTGGTGCATTTGG+AGG + chr1_2:48415580-48415599 None:intergenic 60.0%
!! CCGGTTGATTTGGCATGCCG+CGG + chr1_2:48415597-48415616 None:intergenic 60.0%
CCGCGGCATGCCAAATCAAC+CGG - chr1_2:48415594-48415613 Msa0074180:intron 60.0%
!! CGGTGCCGGGCTTTTCCAAA+TGG - chr1_2:48415901-48415920 Msa0074180:intron 60.0%
GGCCAGTGCATGTGTTGCGT+TGG + chr1_2:48416360-48416379 None:intergenic 60.0%
AGGGGTGAGGGATGTCAGAG+TGG + chr1_2:48416512-48416531 None:intergenic 60.0%
GGAGAAGAAGGGAGGGAAGG+AGG - chr1_2:48419392-48419411 Msa0074180:CDS 60.0%
GGTAAGGCGGAGGTTGAGGC+TGG + chr1_2:48415383-48415402 None:intergenic 65.0%
! CGGAGTGGCGGAGTTAGTGG+AGG + chr1_2:48415522-48415541 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 48412737 48420801 48412737 ID=Msa0074180;Name=Msa0074180
chr1_2 mRNA 48412737 48420801 48412737 ID=Msa0074180-mRNA-1;Parent=Msa0074180;Name=Msa0074180-mRNA-1;_AED=0.10;_eAED=0.10;_QI=229|1|1|1|0.62|0.66|9|628|295
chr1_2 exon 48412737 48413349 48412737 ID=Msa0074180-mRNA-1:exon:14751;Parent=Msa0074180-mRNA-1
chr1_2 exon 48413431 48413550 48413431 ID=Msa0074180-mRNA-1:exon:14750;Parent=Msa0074180-mRNA-1
chr1_2 exon 48415362 48415421 48415362 ID=Msa0074180-mRNA-1:exon:14749;Parent=Msa0074180-mRNA-1
chr1_2 exon 48418613 48418722 48418613 ID=Msa0074180-mRNA-1:exon:14748;Parent=Msa0074180-mRNA-1
chr1_2 exon 48419096 48419212 48419096 ID=Msa0074180-mRNA-1:exon:14747;Parent=Msa0074180-mRNA-1
chr1_2 exon 48419345 48419467 48419345 ID=Msa0074180-mRNA-1:exon:14746;Parent=Msa0074180-mRNA-1
chr1_2 exon 48419991 48420114 48419991 ID=Msa0074180-mRNA-1:exon:14745;Parent=Msa0074180-mRNA-1
chr1_2 exon 48420232 48420289 48420232 ID=Msa0074180-mRNA-1:exon:14744;Parent=Msa0074180-mRNA-1
chr1_2 exon 48420382 48420801 48420382 ID=Msa0074180-mRNA-1:exon:14743;Parent=Msa0074180-mRNA-1
chr1_2 five_prime_UTR 48420573 48420801 48420573 ID=Msa0074180-mRNA-1:five_prime_utr;Parent=Msa0074180-mRNA-1
chr1_2 CDS 48420382 48420572 48420382 ID=Msa0074180-mRNA-1:cds;Parent=Msa0074180-mRNA-1
chr1_2 CDS 48420232 48420289 48420232 ID=Msa0074180-mRNA-1:cds;Parent=Msa0074180-mRNA-1
chr1_2 CDS 48419991 48420114 48419991 ID=Msa0074180-mRNA-1:cds;Parent=Msa0074180-mRNA-1
chr1_2 CDS 48419345 48419467 48419345 ID=Msa0074180-mRNA-1:cds;Parent=Msa0074180-mRNA-1
chr1_2 CDS 48419096 48419212 48419096 ID=Msa0074180-mRNA-1:cds;Parent=Msa0074180-mRNA-1
chr1_2 CDS 48418613 48418722 48418613 ID=Msa0074180-mRNA-1:cds;Parent=Msa0074180-mRNA-1
chr1_2 CDS 48415362 48415421 48415362 ID=Msa0074180-mRNA-1:cds;Parent=Msa0074180-mRNA-1
chr1_2 CDS 48413446 48413550 48413446 ID=Msa0074180-mRNA-1:cds;Parent=Msa0074180-mRNA-1
chr1_2 three_prime_UTR 48413431 48413445 48413431 ID=Msa0074180-mRNA-1:three_prime_utr;Parent=Msa0074180-mRNA-1
chr1_2 three_prime_UTR 48412737 48413349 48412737 ID=Msa0074180-mRNA-1:three_prime_utr;Parent=Msa0074180-mRNA-1
Gene Sequence

>Msa0074180

ATGTTCTCTGTGGCAGAAGAAAACCAAACCATGAACTCTAATTCTAACTCAATGGCAGCACCAACAACAACTACAACAACTAGTGGTGGAGATGCTTCTGGTAAGAAGGTTAGAAAGCCTTACACAATTACCAAGTCAAGAGAAAGCTGGTCTGATGAAGAACATGACAAGTTTCTTGAAGCTCTTCAATTATTTGATAGAGATTGGAAGAAGATTGAAGATTTTGTTGGCTCTAAAACAGTTATTCAGATTCGAAGTCATGCCCAAAAATACTTCTTAAAGGTTCAAAAGAATGGAACACTAGCTCATGTCCCTCCTCCTCGTCCTAAGCGCAAAGCTATTCATCCTTATCCACAAAAAGCAACAAAAAATGCATCCATTGCTTTTGGCTCTTCGGCAAATACCCTTCTACCTGCAGGGTATGTCACGTGGGATGAAACGTCCATGCTGATGAATACTTGTCAGGATGAACTCAACAATCTTCAAGGAAATGAAGCTGACATTGGATCAAAGGGGATCAGCAACAGCGGTCTTAGTGGTGTTGAAGATACTAATACAAGGCTCCCTACTTCTCAAATACCAACACAAGGGACACAAAATCCCGTGATTCATGGTTTGCCGGACTTTGCTGAAGTTTACGGTTTCATTGGAAGTGTTTTTGATCCGGATACAAACGGCCATGTGCAGAAGCTGAAGGAAATGGACCCTATAAACTTTGAAACTGTTTTGTTGTTAATGAGAAACCTCACTGTCAACTTGTCTAGCCCTAATTTTGATCCCATTAAGAAGGCAATGTCAACATATGATGAGAATAGCGATGCAGTAGAAGCTAATGATGTGAAGAAGCAAACAAATGATGTATCATGTCAAACCACTACTGACCACTAG
Protein sequence

>Msa0074180

MFSVAEENQTMNSNSNSMAAPTTTTTTSGGDASGKKVRKPYTITKSRESWSDEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQKNGTLAHVPPPRPKRKAIHPYPQKATKNASIAFGSSANTLLPAGYVTWDETSMLMNTCQDELNNLQGNEADIGSKGISNSGLSGVEDTNTRLPTSQIPTQGTQNPVIHGLPDFAEVYGFIGSVFDPDTNGHVQKLKEMDPINFETVLLLMRNLTVNLSSPNFDPIKKAMSTYDENSDAVEANDVKKQTNDVSCQTTTDH*