AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0511260

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0511260 MtrunA17_Chr3g0117601 98.810 336 4 0 1 336 1 336 0.0 689
Msa0511260 MtrunA17_Chr3g0127201 34.936 312 141 16 43 324 8 287 1.05e-38 139
Msa0511260 MtrunA17_Chr4g0030051 55.039 129 42 3 39 159 21 141 4.20e-36 132
Msa0511260 MtrunA17_Chr2g0326001 54.331 127 45 4 38 155 19 141 1.01e-35 131
Msa0511260 MtrunA17_Chr8g0346551 52.800 125 44 4 45 158 10 130 1.62e-35 130
Msa0511260 MtrunA17_Chr4g0031411 58.491 106 37 3 44 142 55 160 2.16e-34 128
Msa0511260 MtrunA17_Chr2g0328021 72.603 73 18 1 50 122 51 121 7.31e-34 126
Msa0511260 MtrunA17_Chr1g0188851 53.125 128 46 5 41 163 25 143 1.33e-33 125
Msa0511260 MtrunA17_Chr8g0374251 66.197 71 24 0 61 131 68 138 2.93e-31 120
Msa0511260 MtrunA17_Chr4g0010151 69.333 75 20 2 44 115 62 136 9.85e-31 119
Msa0511260 MtrunA17_Chr7g0237921 60.870 92 29 3 27 115 43 130 3.97e-30 117
Msa0511260 MtrunA17_Chr7g0223311 56.122 98 27 3 34 115 34 131 8.34e-30 117
Msa0511260 MtrunA17_Chr8g0367161 67.164 67 22 0 50 116 21 87 8.55e-30 116
Msa0511260 MtrunA17_Chr3g0126201 71.875 64 18 0 52 115 42 105 9.14e-30 116
Msa0511260 MtrunA17_Chr2g0282441 77.049 61 14 0 52 112 16 76 1.38e-29 115
Msa0511260 MtrunA17_Chr4g0047001 81.818 55 10 0 62 116 56 110 1.82e-29 116
Msa0511260 MtrunA17_Chr8g0374111 55.319 94 35 2 52 141 16 106 1.17e-28 110
Msa0511260 MtrunA17_Chr5g0411951 78.571 56 12 0 56 111 38 93 1.22e-28 113
Msa0511260 MtrunA17_Chr1g0177251 71.212 66 19 0 59 124 10 75 2.56e-28 111
Msa0511260 MtrunA17_Chr8g0341671 74.603 63 16 0 56 118 15 77 6.74e-28 108
Msa0511260 MtrunA17_Chr4g0061761 84.314 51 8 0 61 111 40 90 6.45e-27 108
Msa0511260 MtrunA17_Chr2g0282511 84.000 50 8 0 60 109 44 93 4.02e-26 105
Msa0511260 MtrunA17_Chr2g0308011 82.353 51 9 0 59 109 35 85 6.90e-26 102
Msa0511260 MtrunA17_Chr3g0092111 66.667 69 22 1 50 118 126 193 1.19e-25 106
Msa0511260 MtrunA17_Chr2g0282051 47.458 118 42 5 1 116 1 100 2.15e-25 103
Msa0511260 MtrunA17_Chr4g0047761 76.786 56 12 1 61 116 72 126 6.75e-25 102
Msa0511260 MtrunA17_Chr7g0217581 43.697 119 59 2 25 136 190 307 3.76e-24 103
Msa0511260 MtrunA17_Chr4g0042481 60.870 69 26 1 50 118 112 179 4.60e-24 102
Msa0511260 MtrunA17_Chr6g0453321 44.545 110 54 1 30 132 98 207 5.86e-24 102
Msa0511260 MtrunA17_Chr7g0254161 42.342 111 58 2 20 130 66 170 1.12e-23 100
Msa0511260 MtrunA17_Chr6g0460721 42.478 113 57 4 7 119 43 147 2.36e-23 98.6
Msa0511260 MtrunA17_Chr8g0355261 53.333 75 34 1 41 115 99 172 4.74e-23 99.4
Msa0511260 MtrunA17_Chr6g0460731 50.617 81 39 1 50 130 86 165 6.98e-23 97.8
Msa0511260 MtrunA17_Chr5g0417571 41.600 125 55 3 12 118 71 195 2.81e-22 95.5
Msa0511260 MtrunA17_Chr2g0283811 66.667 54 18 0 61 114 47 100 3.67e-22 91.3
Msa0511260 MtrunA17_Chr5g0417601 63.793 58 21 0 57 114 136 193 1.50e-20 91.3
Msa0511260 MtrunA17_Chr5g0417561 45.161 93 47 1 26 114 80 172 3.10e-20 90.5
Msa0511260 MtrunA17_Chr5g0417551 68.519 54 17 0 61 114 127 180 7.05e-20 89.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0511260 AT5G62940.1 42.748 393 145 23 1 334 1 372 7.30e-56 186
Msa0511260 AT5G60200.1 66.292 89 27 3 33 121 30 115 2.44e-35 129
Msa0511260 AT1G51700.1 47.656 128 54 2 56 170 28 155 7.32e-33 121
Msa0511260 AT2G28510.1 56.364 110 35 2 63 160 50 158 5.37e-32 121
Msa0511260 AT3G45610.1 43.373 166 68 7 54 212 32 178 2.46e-31 118
Msa0511260 AT4G24060.1 50.000 122 46 2 50 156 42 163 2.83e-31 120
Msa0511260 AT5G02460.1 70.667 75 19 2 44 115 75 149 5.10e-31 121
Msa0511260 AT3G55370.1 65.000 80 25 2 43 119 55 134 7.27e-31 119
Msa0511260 AT3G55370.2 65.000 80 25 2 43 119 55 134 9.37e-31 119
Msa0511260 AT3G55370.3 65.000 80 25 2 43 119 100 179 1.34e-30 119
Msa0511260 AT2G37590.1 64.474 76 24 1 44 116 69 144 1.74e-30 118
Msa0511260 AT1G07640.1 69.444 72 19 1 47 115 4 75 6.45e-30 115
Msa0511260 AT5G60850.1 66.234 77 20 1 50 120 34 110 6.57e-30 116
Msa0511260 AT1G07640.2 69.444 72 19 1 47 115 60 131 1.18e-29 116
Msa0511260 AT1G07640.3 69.444 72 19 1 47 115 68 139 1.28e-29 116
Msa0511260 AT1G64620.1 52.672 131 47 3 45 164 33 159 1.68e-29 116
Msa0511260 AT3G61850.2 65.753 73 23 1 46 118 49 119 3.60e-29 114
Msa0511260 AT3G61850.3 65.753 73 23 1 46 118 49 119 3.60e-29 114
Msa0511260 AT5G65590.1 62.963 81 25 1 35 115 20 95 3.83e-29 114
Msa0511260 AT3G61850.1 65.753 73 23 1 46 118 61 131 4.49e-29 114
Msa0511260 AT3G61850.5 65.753 73 23 1 46 118 49 119 6.25e-29 114
Msa0511260 AT3G61850.4 65.753 73 23 1 46 118 61 131 6.48e-29 114
Msa0511260 AT3G52440.1 68.182 66 21 0 58 123 22 87 1.10e-28 111
Msa0511260 AT1G28310.1 82.143 56 10 0 61 116 27 82 1.36e-28 112
Msa0511260 AT3G52440.2 68.182 66 21 0 58 123 41 106 2.06e-28 111
Msa0511260 AT1G28310.2 82.143 56 10 0 61 116 51 106 2.16e-28 112
Msa0511260 AT1G21340.1 69.444 72 19 1 63 134 40 108 3.13e-28 110
Msa0511260 AT3G21270.1 54.717 106 42 3 61 164 29 130 5.04e-28 108
Msa0511260 AT4G21050.1 59.551 89 33 2 54 142 19 104 5.79e-28 108
Msa0511260 AT2G28810.2 65.152 66 22 1 47 112 64 128 5.95e-28 111
Msa0511260 AT2G28810.1 65.152 66 22 1 47 112 81 145 1.07e-27 111
Msa0511260 AT4G00940.1 53.398 103 31 2 63 151 70 169 8.91e-27 107
Msa0511260 AT4G00940.3 53.398 103 31 2 63 151 70 169 8.91e-27 107
Msa0511260 AT4G00940.2 53.398 103 31 2 63 151 70 169 8.91e-27 107
Msa0511260 AT2G46590.1 55.682 88 36 2 22 108 30 115 2.75e-26 107
Msa0511260 AT4G38000.1 60.256 78 30 1 41 117 21 98 2.76e-26 105
Msa0511260 AT2G46590.2 55.682 88 36 2 22 108 42 127 3.03e-26 107
Msa0511260 AT3G50410.1 75.439 57 14 0 61 117 30 86 7.36e-26 104
Msa0511260 AT5G66940.1 70.968 62 18 0 61 122 32 93 1.08e-25 103
Msa0511260 AT1G47655.1 73.684 57 13 1 55 109 21 77 6.24e-25 100
Msa0511260 AT3G47500.1 63.235 68 24 1 51 118 101 167 5.07e-24 102
Msa0511260 AT5G62430.1 46.087 115 48 3 50 164 44 144 6.53e-24 100
Msa0511260 AT5G39660.3 63.768 69 24 1 50 118 128 195 1.00e-23 101
Msa0511260 AT5G39660.1 63.768 69 24 1 50 118 128 195 1.00e-23 101
Msa0511260 AT5G39660.2 63.768 69 24 1 50 118 128 195 1.00e-23 101
Msa0511260 AT1G69570.1 64.516 62 21 1 53 114 125 185 3.99e-23 99.4
Msa0511260 AT1G29160.1 60.000 70 26 1 45 114 48 115 4.67e-23 94.7
Msa0511260 AT2G34140.1 47.253 91 36 1 24 114 33 111 1.49e-22 93.2
Msa0511260 AT4G21040.1 57.971 69 29 0 63 131 27 95 4.28e-22 93.6
Msa0511260 AT1G26790.1 51.852 81 38 1 52 132 103 182 8.30e-22 95.1
Msa0511260 AT4G21080.1 56.000 75 30 1 63 134 27 101 4.41e-21 91.3
Msa0511260 AT4G21030.1 55.556 63 25 1 50 112 13 72 6.91e-15 72.8

Find 121 sgRNAs with CRISPR-Local

Find 314 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACTTGTTCTCCATGAAATT+AGG 0.146876 3_4:+60673245 None:intergenic
AGTAAGTTAGAAGGCATAAT+TGG 0.168612 3_4:-60673170 Msa0511260:CDS
TCTCACCTAAGTAACTTATT+TGG 0.188613 3_4:-60673290 Msa0511260:CDS
TAGCAATGGTGCTTATTTAA+TGG 0.193039 3_4:-60672988 Msa0511260:CDS
AAAGAAAGCTGAAGATCTTT+AGG 0.209545 3_4:+60673329 None:intergenic
CATTCAAGTGACAATAGTTT+AGG 0.231938 3_4:+60672888 None:intergenic
TGCCTTGGTGTGTTTCCTTT+TGG 0.256108 3_4:-60672513 Msa0511260:three_prime_UTR
TTTGGTGGAATGTCATTTAA+TGG 0.272373 3_4:-60673020 Msa0511260:CDS
ACTTGTTCTCCATGAAATTA+GGG 0.276978 3_4:+60673246 None:intergenic
GATATGATGAATGGACAAAA+TGG 0.284919 3_4:-60673068 Msa0511260:CDS
TTTGGAGCTAATGGAGCATT+AGG 0.302981 3_4:-60673272 Msa0511260:CDS
TGATCATATGAATATGAATA+TGG 0.304551 3_4:-60673108 Msa0511260:CDS
AGTAACTTATTTGGAGCTAA+TGG 0.308114 3_4:-60673281 Msa0511260:CDS
GTTCCTAAGTGTTCCTCCTT+TGG 0.313562 3_4:+60673472 None:intergenic
TTCTCTTCACGTCTGCAATA+TGG 0.315298 3_4:-60674210 Msa0511260:CDS
ATTCAAGTGACAATAGTTTA+GGG 0.332848 3_4:+60672889 None:intergenic
AAGAAAGCTGAAGATCTTTA+GGG 0.336634 3_4:+60673330 None:intergenic
ACACACCAAGGCAGTAGATT+TGG 0.347710 3_4:+60672523 None:intergenic
ATGAATATGGGTGTTGGGAT+TGG 0.368536 3_4:-60673095 Msa0511260:CDS
GCATAATTGGGAGTAGTTCT+AGG 0.373441 3_4:-60673157 Msa0511260:CDS
CTTTCCATCATGAAGTCAAT+AGG 0.377139 3_4:+60673191 None:intergenic
GTTGTTGTAATAGCAGAATT+TGG 0.387536 3_4:+60673547 None:intergenic
TTTCTACAGCCTCCACCAAC+AGG 0.392353 3_4:+60673446 None:intergenic
AAAGGTCAGTCATTTGGATA+TGG 0.392934 3_4:-60672834 Msa0511260:CDS
GCAAGACTTGTAGAAGGTAT+TGG 0.393470 3_4:-60673496 Msa0511260:CDS
AAAGTGATTGATTAGGTCAT+TGG 0.395429 3_4:+60672721 None:intergenic
GCTGGAAAAGGTCAGTCATT+TGG 0.395618 3_4:-60672840 Msa0511260:CDS
ATTAGGAAACCCTAATTTCA+TGG 0.397565 3_4:-60673255 Msa0511260:CDS
CGACACGTCATGGAAGCTTT+AGG 0.404008 3_4:-60672460 Msa0511260:three_prime_UTR
AGTGACAATAGTTTAGGGTT+TGG 0.405871 3_4:+60672894 None:intergenic
GTTGTGTTGTGGTTGCTACA+TGG 0.420708 3_4:+60674448 None:intergenic
TCCTCATCATTAGCATCATA+TGG 0.425855 3_4:+60672942 None:intergenic
GTAAGTTAGAAGGCATAATT+GGG 0.426365 3_4:-60673169 Msa0511260:CDS
GCGTTTCTTTCTATAAATCA+AGG 0.427761 3_4:-60672612 Msa0511260:three_prime_UTR
TGTTAAGTGAGAAGAGATAG+AGG 0.437368 3_4:+60674390 None:intergenic
TATGAAGAAAGTGATTGATT+AGG 0.437988 3_4:+60672714 None:intergenic
TAGCTCCAAATAAGTTACTT+AGG 0.442973 3_4:+60673285 None:intergenic
AGGTGAGAGAATTGCACATC+AGG 0.445358 3_4:+60673305 None:intergenic
ATCTGCAGATCATTGGTTGC+AGG 0.446436 3_4:-60674183 Msa0511260:intron
ATGTAACATCGAGGAAGATA+TGG 0.449127 3_4:-60672421 Msa0511260:three_prime_UTR
ATATACATAAAGTCTTTGTA+TGG 0.454485 3_4:-60672676 Msa0511260:three_prime_UTR
TCTTAGCCTCCTCTCTATCA+TGG 0.458753 3_4:+60673619 None:intergenic
GATCAAGGTTGCTCTGATGC+TGG 0.462649 3_4:-60672858 Msa0511260:CDS
ATGATGGAAAGTAAGTTAGA+AGG 0.467778 3_4:-60673179 Msa0511260:CDS
TGGAATCATCTGCAGATCAT+TGG 0.469488 3_4:-60674190 Msa0511260:CDS
GAGCTTAGCCGTTGATCAAA+GGG 0.477519 3_4:+60672766 None:intergenic
AGCTAAAACATCAAAAGAAA+AGG 0.479524 3_4:+60672283 None:intergenic
AGTGGTATGATGAATGGTTA+TGG 0.480178 3_4:-60672804 Msa0511260:CDS
TTCACACTCGACCCATCTCT+TGG 0.480929 3_4:+60672562 None:intergenic
AATATGGGTGTTGGGATTGG+AGG 0.481246 3_4:-60673092 Msa0511260:CDS
GGTTGCTCTGATGCTGGAAA+AGG 0.482324 3_4:-60672852 Msa0511260:CDS
GGCACAATTCACGATGAGTC+AGG 0.484101 3_4:-60673698 Msa0511260:CDS
GATTCATCTTCACCAATGTC+TGG 0.489933 3_4:-60673671 Msa0511260:CDS
CATAAAGTCTTTGTATGGGA+GGG 0.490896 3_4:-60672671 Msa0511260:three_prime_UTR
CTTGATCACAACTCTGAGCT+TGG 0.491446 3_4:-60674251 Msa0511260:five_prime_UTR
GAGAACAAGTATAGCAATGT+TGG 0.493849 3_4:-60673233 Msa0511260:CDS
CTCCTCTCTATCATGGATGA+TGG 0.495201 3_4:+60673626 None:intergenic
ACTTCTGCAAGACTTGTAGA+AGG 0.495701 3_4:-60673502 Msa0511260:CDS
AGAGCTTAGCCGTTGATCAA+AGG 0.500555 3_4:+60672765 None:intergenic
CTAAACTATTGTCACTTGAA+TGG 0.500804 3_4:-60672887 Msa0511260:CDS
CTTGAATGGCAGCAAGATCA+AGG 0.502791 3_4:-60672873 Msa0511260:CDS
ATGAATATGAATATGGGTGT+TGG 0.503188 3_4:-60673101 Msa0511260:CDS
AGTCATTTGGATATGGATCA+TGG 0.505387 3_4:-60672827 Msa0511260:CDS
GTGACATGCTAACATGTTCA+AGG 0.508689 3_4:-60673649 Msa0511260:CDS
TCTTTGTGTGCGACACGTCA+TGG 0.513722 3_4:-60672470 Msa0511260:three_prime_UTR
TGAATATGAATATGGGTGTT+GGG 0.514370 3_4:-60673100 Msa0511260:CDS
ATCATGAAGTCAATAGGCCT+AGG 0.516098 3_4:+60673197 None:intergenic
AAACATCAAAAGAAAAGGAA+TGG 0.527388 3_4:+60672288 None:intergenic
ACATATTTATATAATCCAAA+AGG 0.528989 3_4:+60672498 None:intergenic
TTGTGATCAAGCAGTGTAGT+TGG 0.535204 3_4:+60674263 None:intergenic
CGTTTCTTTCTATAAATCAA+GGG 0.539763 3_4:-60672611 Msa0511260:three_prime_UTR
ATCCGAGAAGAAAATGAAAG+AGG 0.539774 3_4:+60674350 None:intergenic
TTGTGTTGTGGTTGCTACAT+GGG 0.541396 3_4:+60674449 None:intergenic
ATCAAAAGAAAAGGAATGGA+GGG 0.543619 3_4:+60672292 None:intergenic
AGAAGAAAATGAAAGAGGAT+AGG 0.545528 3_4:+60674355 None:intergenic
CTACTGAATTAACCAAGAGA+TGG 0.548579 3_4:-60672574 Msa0511260:three_prime_UTR
CTTAGGAACATCCCTGTTGG+TGG 0.550577 3_4:-60673458 Msa0511260:CDS
CATCAAAAGAAAAGGAATGG+AGG 0.551283 3_4:+60672291 None:intergenic
GGTGGAATGTCATTTAATGG+AGG 0.555147 3_4:-60673017 Msa0511260:CDS
CAAGTCTTGCAGAAGTACCT+TGG 0.558008 3_4:+60673509 None:intergenic
AGGAACATCCCTGTTGGTGG+AGG 0.558859 3_4:-60673455 Msa0511260:CDS
TATACATAAAGTCTTTGTAT+GGG 0.559157 3_4:-60672675 Msa0511260:three_prime_UTR
CATGTGTTTGTGTTGTGTTG+TGG 0.559484 3_4:+60674437 None:intergenic
AGAGTCCAAATCTACTGCCT+TGG 0.559695 3_4:-60672528 Msa0511260:three_prime_UTR
TACTGAATTAACCAAGAGAT+GGG 0.562851 3_4:-60672573 Msa0511260:three_prime_UTR
ACAACAAACCCTTTGATCAA+CGG 0.565654 3_4:-60672774 Msa0511260:CDS
ATATGATGAATGGACAAAAT+GGG 0.566744 3_4:-60673067 Msa0511260:CDS
ATTGGAGGAGATATGATGAA+TGG 0.570060 3_4:-60673077 Msa0511260:CDS
ACATAAAGTCTTTGTATGGG+AGG 0.575556 3_4:-60672672 Msa0511260:three_prime_UTR
ACCTATCCCTAAAATGTCCA+AGG 0.579764 3_4:-60673586 Msa0511260:CDS
GATCATATGAATATGAATAT+GGG 0.580380 3_4:-60673107 Msa0511260:CDS
TAGGCCTATTGACTTCATGA+TGG 0.581168 3_4:-60673195 Msa0511260:CDS
TCATGGAGTGGTATGATGAA+TGG 0.582721 3_4:-60672810 Msa0511260:CDS
TTGTGGTTGCTACATGGGAC+GGG 0.587904 3_4:+60674454 None:intergenic
TGTAGAAGGTATTGGACCAA+AGG 0.594254 3_4:-60673488 Msa0511260:CDS
AATTCACGATGAGTCAGGAA+TGG 0.596611 3_4:-60673693 Msa0511260:CDS
GTTATTGTCATTGCATTGCA+AGG 0.598961 3_4:+60674323 None:intergenic
GGACCAAAGGAGGAACACTT+AGG 0.599656 3_4:-60673475 Msa0511260:CDS
AATGCATGATGAAAATTCTG+AGG 0.599697 3_4:+60673041 None:intergenic
AATGGAGGAAACAATAGCAA+TGG 0.607650 3_4:-60673002 Msa0511260:CDS
AGGAAGGTACATGATGTGGT+TGG 0.607867 3_4:+60673363 None:intergenic
TCATGAAGTCAATAGGCCTA+GGG 0.612063 3_4:+60673198 None:intergenic
GGCCATCATCCATGATAGAG+AGG 0.614387 3_4:-60673628 Msa0511260:CDS
GTTTCTTTCTATAAATCAAG+GGG 0.615214 3_4:-60672610 Msa0511260:three_prime_UTR
GGTGAGAGAATTGCACATCA+GGG 0.615522 3_4:+60673306 None:intergenic
GTTGTGGTTGCTACATGGGA+CGG 0.616180 3_4:+60674453 None:intergenic
TTGGCATGCTTGAAAACCCT+AGG 0.618350 3_4:-60673214 Msa0511260:CDS
AGAAGGTATTGGACCAAAGG+AGG 0.622045 3_4:-60673485 Msa0511260:CDS
GTTAGCATGTCACCAGACAT+TGG 0.624948 3_4:+60673659 None:intergenic
TTCTACAGCCTCCACCAACA+GGG 0.626747 3_4:+60673447 None:intergenic
TGGTAGGAAGGTACATGATG+TGG 0.632743 3_4:+60673359 None:intergenic
ACACTTAGGAACATCCCTGT+TGG 0.646210 3_4:-60673461 Msa0511260:CDS
TTTGGATATGGATCATGGAG+TGG 0.646639 3_4:-60672822 Msa0511260:CDS
GTTGATCAAAGGGTTTGTTG+TGG 0.647747 3_4:+60672776 None:intergenic
TTTAGGGATAGGTCATGTGG+TGG 0.663306 3_4:+60673596 None:intergenic
ACTACAGTCTCTCTCAGCCA+AGG 0.663924 3_4:-60673526 Msa0511260:CDS
GTGTGAGTTGAATCACACCT+TGG 0.665322 3_4:+60673569 None:intergenic
TCCATATGATGCTAATGATG+AGG 0.665364 3_4:-60672943 Msa0511260:CDS
CATCATCCATGATAGAGAGG+AGG 0.679330 3_4:-60673625 Msa0511260:CDS
ATCCAAAAGGAAACACACCA+AGG 0.706145 3_4:+60672511 None:intergenic
TATGCTGTAATGTAACATCG+AGG 0.752266 3_4:-60672430 Msa0511260:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGGAATTTTGATAATTATTT+TGG - chr3_4:60673584-60673603 Msa0511260:CDS 15.0%
!! ACATATTTATATAATCCAAA+AGG + chr3_4:60674226-60674245 None:intergenic 15.0%
!!! AGGAATTTTGATAATTATTT+TGG - chr3_4:60673584-60673603 Msa0511260:CDS 15.0%
!! ACATATTTATATAATCCAAA+AGG + chr3_4:60674226-60674245 None:intergenic 15.0%
!! TAAACAAAATGAAAGGAAAA+TGG + chr3_4:60672588-60672607 None:intergenic 20.0%
!! AACATGATAAACAAAATGAA+AGG + chr3_4:60672595-60672614 None:intergenic 20.0%
!! ACATGCATTTATCAAATTAA+TGG - chr3_4:60672629-60672648 Msa0511260:three_prime_UTR 20.0%
!! AAGCTAAGAAAAACAAAATT+AGG - chr3_4:60672849-60672868 Msa0511260:CDS 20.0%
!! AGCTAAGAAAAACAAAATTA+GGG - chr3_4:60672850-60672869 Msa0511260:CDS 20.0%
!!! TTCTTTTATACAAAATTGTC+AGG - chr3_4:60673001-60673020 Msa0511260:CDS 20.0%
!!! TCTTTTATACAAAATTGTCA+GGG - chr3_4:60673002-60673021 Msa0511260:CDS 20.0%
!!! TAAGTGATCATTTGATTTTT+TGG + chr3_4:60673318-60673337 None:intergenic 20.0%
!! TGATCATATGAATATGAATA+TGG - chr3_4:60673613-60673632 Msa0511260:CDS 20.0%
!! GATCATATGAATATGAATAT+GGG - chr3_4:60673614-60673633 Msa0511260:CDS 20.0%
!! ATATACATAAAGTCTTTGTA+TGG - chr3_4:60674045-60674064 Msa0511260:intron 20.0%
!! TATACATAAAGTCTTTGTAT+GGG - chr3_4:60674046-60674065 Msa0511260:intron 20.0%
!! TAAACAAAATGAAAGGAAAA+TGG + chr3_4:60672588-60672607 None:intergenic 20.0%
!! AACATGATAAACAAAATGAA+AGG + chr3_4:60672595-60672614 None:intergenic 20.0%
!! ACATGCATTTATCAAATTAA+TGG - chr3_4:60672629-60672648 Msa0511260:three_prime_UTR 20.0%
!! AAGCTAAGAAAAACAAAATT+AGG - chr3_4:60672849-60672868 Msa0511260:CDS 20.0%
!! AGCTAAGAAAAACAAAATTA+GGG - chr3_4:60672850-60672869 Msa0511260:CDS 20.0%
!!! TTCTTTTATACAAAATTGTC+AGG - chr3_4:60673001-60673020 Msa0511260:CDS 20.0%
!!! TCTTTTATACAAAATTGTCA+GGG - chr3_4:60673002-60673021 Msa0511260:CDS 20.0%
!!! TAAGTGATCATTTGATTTTT+TGG + chr3_4:60673318-60673337 None:intergenic 20.0%
!! TGATCATATGAATATGAATA+TGG - chr3_4:60673613-60673632 Msa0511260:CDS 20.0%
!! GATCATATGAATATGAATAT+GGG - chr3_4:60673614-60673633 Msa0511260:CDS 20.0%
!! ATATACATAAAGTCTTTGTA+TGG - chr3_4:60674045-60674064 Msa0511260:intron 20.0%
!! TATACATAAAGTCTTTGTAT+GGG - chr3_4:60674046-60674065 Msa0511260:intron 20.0%
! AAATTAATGGTGTAGTAGTT+TGG - chr3_4:60672642-60672661 Msa0511260:three_prime_UTR 25.0%
!! GAAAAGAGAATTTTATGCTT+AGG - chr3_4:60672664-60672683 Msa0511260:three_prime_UTR 25.0%
!!! TTCACTTTTAATCATGAGAT+CGG + chr3_4:60672804-60672823 None:intergenic 25.0%
!!! TGGAATTGGATTATTTTACA+TGG + chr3_4:60672921-60672940 None:intergenic 25.0%
!!! TTAATTTGTCTTGTTGGAAT+TGG + chr3_4:60672935-60672954 None:intergenic 25.0%
!!! AATGTGTTAATTTGTCTTGT+TGG + chr3_4:60672941-60672960 None:intergenic 25.0%
! ATATGATGAATGGACAAAAT+GGG - chr3_4:60673654-60673673 Msa0511260:CDS 25.0%
! ATTCAAGTGACAATAGTTTA+GGG + chr3_4:60673835-60673854 None:intergenic 25.0%
! TATGAAGAAAGTGATTGATT+AGG + chr3_4:60674010-60674029 None:intergenic 25.0%
! CGTTTCTTTCTATAAATCAA+GGG - chr3_4:60674110-60674129 Msa0511260:intron 25.0%
! GTTTCTTTCTATAAATCAAG+GGG - chr3_4:60674111-60674130 Msa0511260:intron 25.0%
!!! ATTTTTTGTCTCTATGTTTG+TGG - chr3_4:60674385-60674404 Msa0511260:five_prime_UTR 25.0%
!!! TTTTTTGTCTCTATGTTTGT+GGG - chr3_4:60674386-60674405 Msa0511260:five_prime_UTR 25.0%
! AAACATCAAAAGAAAAGGAA+TGG + chr3_4:60674436-60674455 None:intergenic 25.0%
! AGCTAAAACATCAAAAGAAA+AGG + chr3_4:60674441-60674460 None:intergenic 25.0%
! AAATTAATGGTGTAGTAGTT+TGG - chr3_4:60672642-60672661 Msa0511260:three_prime_UTR 25.0%
!! GAAAAGAGAATTTTATGCTT+AGG - chr3_4:60672664-60672683 Msa0511260:three_prime_UTR 25.0%
!!! TTCACTTTTAATCATGAGAT+CGG + chr3_4:60672804-60672823 None:intergenic 25.0%
!!! TGGAATTGGATTATTTTACA+TGG + chr3_4:60672921-60672940 None:intergenic 25.0%
!!! TTAATTTGTCTTGTTGGAAT+TGG + chr3_4:60672935-60672954 None:intergenic 25.0%
!!! AATGTGTTAATTTGTCTTGT+TGG + chr3_4:60672941-60672960 None:intergenic 25.0%
! ATATGATGAATGGACAAAAT+GGG - chr3_4:60673654-60673673 Msa0511260:CDS 25.0%
! ATTCAAGTGACAATAGTTTA+GGG + chr3_4:60673835-60673854 None:intergenic 25.0%
! TATGAAGAAAGTGATTGATT+AGG + chr3_4:60674010-60674029 None:intergenic 25.0%
! CGTTTCTTTCTATAAATCAA+GGG - chr3_4:60674110-60674129 Msa0511260:intron 25.0%
! GTTTCTTTCTATAAATCAAG+GGG - chr3_4:60674111-60674130 Msa0511260:intron 25.0%
!!! ATTTTTTGTCTCTATGTTTG+TGG - chr3_4:60674385-60674404 Msa0511260:five_prime_UTR 25.0%
!!! TTTTTTGTCTCTATGTTTGT+GGG - chr3_4:60674386-60674405 Msa0511260:five_prime_UTR 25.0%
! AAACATCAAAAGAAAAGGAA+TGG + chr3_4:60674436-60674455 None:intergenic 25.0%
! AGCTAAAACATCAAAAGAAA+AGG + chr3_4:60674441-60674460 None:intergenic 25.0%
AGAAGAAAATGAAAGAGGAT+AGG + chr3_4:60672369-60672388 None:intergenic 30.0%
! ATCCTCTTTCATTTTCTTCT+CGG - chr3_4:60672369-60672388 Msa0511260:three_prime_UTR 30.0%
AAAATGGTATACATTGTGCA+TGG + chr3_4:60672572-60672591 None:intergenic 30.0%
CATGATCATTTGAATTGCTA+TGG - chr3_4:60672739-60672758 Msa0511260:three_prime_UTR 30.0%
GATCTCATGATTAAAAGTGA+AGG - chr3_4:60672803-60672822 Msa0511260:CDS 30.0%
GTTGTTGTAATAGCAGAATT+TGG + chr3_4:60673177-60673196 None:intergenic 30.0%
AAGAAAGCTGAAGATCTTTA+GGG + chr3_4:60673394-60673413 None:intergenic 30.0%
AAAGAAAGCTGAAGATCTTT+AGG + chr3_4:60673395-60673414 None:intergenic 30.0%
TCTCACCTAAGTAACTTATT+TGG - chr3_4:60673431-60673450 Msa0511260:CDS 30.0%
TAGCTCCAAATAAGTTACTT+AGG + chr3_4:60673439-60673458 None:intergenic 30.0%
! AGTAACTTATTTGGAGCTAA+TGG - chr3_4:60673440-60673459 Msa0511260:CDS 30.0%
ATTAGGAAACCCTAATTTCA+TGG - chr3_4:60673466-60673485 Msa0511260:CDS 30.0%
ACTTGTTCTCCATGAAATTA+GGG + chr3_4:60673478-60673497 None:intergenic 30.0%
TACTTGTTCTCCATGAAATT+AGG + chr3_4:60673479-60673498 None:intergenic 30.0%
! ATGATGGAAAGTAAGTTAGA+AGG - chr3_4:60673542-60673561 Msa0511260:CDS 30.0%
! AGTAAGTTAGAAGGCATAAT+TGG - chr3_4:60673551-60673570 Msa0511260:CDS 30.0%
! GTAAGTTAGAAGGCATAATT+GGG - chr3_4:60673552-60673571 Msa0511260:CDS 30.0%
ATGAATATGAATATGGGTGT+TGG - chr3_4:60673620-60673639 Msa0511260:CDS 30.0%
TGAATATGAATATGGGTGTT+GGG - chr3_4:60673621-60673640 Msa0511260:CDS 30.0%
GATATGATGAATGGACAAAA+TGG - chr3_4:60673653-60673672 Msa0511260:CDS 30.0%
AATGCATGATGAAAATTCTG+AGG + chr3_4:60673683-60673702 None:intergenic 30.0%
! CAGAATTTTCATCATGCATT+TGG - chr3_4:60673683-60673702 Msa0511260:CDS 30.0%
! AATTTTCATCATGCATTTGG+TGG - chr3_4:60673686-60673705 Msa0511260:CDS 30.0%
! TTTGGTGGAATGTCATTTAA+TGG - chr3_4:60673701-60673720 Msa0511260:CDS 30.0%
TAGCAATGGTGCTTATTTAA+TGG - chr3_4:60673733-60673752 Msa0511260:intron 30.0%
CATTCAAGTGACAATAGTTT+AGG + chr3_4:60673836-60673855 None:intergenic 30.0%
! CTAAACTATTGTCACTTGAA+TGG - chr3_4:60673834-60673853 Msa0511260:intron 30.0%
AAAGTGATTGATTAGGTCAT+TGG + chr3_4:60674003-60674022 None:intergenic 30.0%
GCGTTTCTTTCTATAAATCA+AGG - chr3_4:60674109-60674128 Msa0511260:intron 30.0%
TACTGAATTAACCAAGAGAT+GGG - chr3_4:60674148-60674167 Msa0511260:intron 30.0%
! TTTTTGTCTCTATGTTTGTG+GGG - chr3_4:60674387-60674406 Msa0511260:five_prime_UTR 30.0%
ATCAAAAGAAAAGGAATGGA+GGG + chr3_4:60674432-60674451 None:intergenic 30.0%
!!! TCTTTTGATGTTTTAGCTCT+TGG - chr3_4:60674443-60674462 Msa0511260:five_prime_UTR 30.0%
AGAAGAAAATGAAAGAGGAT+AGG + chr3_4:60672369-60672388 None:intergenic 30.0%
! ATCCTCTTTCATTTTCTTCT+CGG - chr3_4:60672369-60672388 Msa0511260:three_prime_UTR 30.0%
AAAATGGTATACATTGTGCA+TGG + chr3_4:60672572-60672591 None:intergenic 30.0%
CATGATCATTTGAATTGCTA+TGG - chr3_4:60672739-60672758 Msa0511260:three_prime_UTR 30.0%
GATCTCATGATTAAAAGTGA+AGG - chr3_4:60672803-60672822 Msa0511260:CDS 30.0%
GTTGTTGTAATAGCAGAATT+TGG + chr3_4:60673177-60673196 None:intergenic 30.0%
AAGAAAGCTGAAGATCTTTA+GGG + chr3_4:60673394-60673413 None:intergenic 30.0%
AAAGAAAGCTGAAGATCTTT+AGG + chr3_4:60673395-60673414 None:intergenic 30.0%
TCTCACCTAAGTAACTTATT+TGG - chr3_4:60673431-60673450 Msa0511260:CDS 30.0%
TAGCTCCAAATAAGTTACTT+AGG + chr3_4:60673439-60673458 None:intergenic 30.0%
! AGTAACTTATTTGGAGCTAA+TGG - chr3_4:60673440-60673459 Msa0511260:CDS 30.0%
ATTAGGAAACCCTAATTTCA+TGG - chr3_4:60673466-60673485 Msa0511260:CDS 30.0%
ACTTGTTCTCCATGAAATTA+GGG + chr3_4:60673478-60673497 None:intergenic 30.0%
TACTTGTTCTCCATGAAATT+AGG + chr3_4:60673479-60673498 None:intergenic 30.0%
! ATGATGGAAAGTAAGTTAGA+AGG - chr3_4:60673542-60673561 Msa0511260:CDS 30.0%
! AGTAAGTTAGAAGGCATAAT+TGG - chr3_4:60673551-60673570 Msa0511260:CDS 30.0%
! GTAAGTTAGAAGGCATAATT+GGG - chr3_4:60673552-60673571 Msa0511260:CDS 30.0%
ATGAATATGAATATGGGTGT+TGG - chr3_4:60673620-60673639 Msa0511260:CDS 30.0%
TGAATATGAATATGGGTGTT+GGG - chr3_4:60673621-60673640 Msa0511260:CDS 30.0%
GATATGATGAATGGACAAAA+TGG - chr3_4:60673653-60673672 Msa0511260:CDS 30.0%
AATGCATGATGAAAATTCTG+AGG + chr3_4:60673683-60673702 None:intergenic 30.0%
! CAGAATTTTCATCATGCATT+TGG - chr3_4:60673683-60673702 Msa0511260:CDS 30.0%
! AATTTTCATCATGCATTTGG+TGG - chr3_4:60673686-60673705 Msa0511260:CDS 30.0%
! TTTGGTGGAATGTCATTTAA+TGG - chr3_4:60673701-60673720 Msa0511260:CDS 30.0%
TAGCAATGGTGCTTATTTAA+TGG - chr3_4:60673733-60673752 Msa0511260:intron 30.0%
CATTCAAGTGACAATAGTTT+AGG + chr3_4:60673836-60673855 None:intergenic 30.0%
! CTAAACTATTGTCACTTGAA+TGG - chr3_4:60673834-60673853 Msa0511260:intron 30.0%
AAAGTGATTGATTAGGTCAT+TGG + chr3_4:60674003-60674022 None:intergenic 30.0%
GCGTTTCTTTCTATAAATCA+AGG - chr3_4:60674109-60674128 Msa0511260:intron 30.0%
TACTGAATTAACCAAGAGAT+GGG - chr3_4:60674148-60674167 Msa0511260:intron 30.0%
! TTTTTGTCTCTATGTTTGTG+GGG - chr3_4:60674387-60674406 Msa0511260:five_prime_UTR 30.0%
ATCAAAAGAAAAGGAATGGA+GGG + chr3_4:60674432-60674451 None:intergenic 30.0%
!!! TCTTTTGATGTTTTAGCTCT+TGG - chr3_4:60674443-60674462 Msa0511260:five_prime_UTR 30.0%
TGTTAAGTGAGAAGAGATAG+AGG + chr3_4:60672334-60672353 None:intergenic 35.0%
ATCCGAGAAGAAAATGAAAG+AGG + chr3_4:60672374-60672393 None:intergenic 35.0%
GTTATTGTCATTGCATTGCA+AGG + chr3_4:60672401-60672420 None:intergenic 35.0%
! ATCACACCTTGGACATTTTA+GGG + chr3_4:60673144-60673163 None:intergenic 35.0%
! AATCACACCTTGGACATTTT+AGG + chr3_4:60673145-60673164 None:intergenic 35.0%
!!! ATCTTTAGGGTTTTGATGGT+AGG + chr3_4:60673381-60673400 None:intergenic 35.0%
!!! GAAGATCTTTAGGGTTTTGA+TGG + chr3_4:60673385-60673404 None:intergenic 35.0%
GAGAACAAGTATAGCAATGT+TGG - chr3_4:60673488-60673507 Msa0511260:CDS 35.0%
CTTTCCATCATGAAGTCAAT+AGG + chr3_4:60673533-60673552 None:intergenic 35.0%
ATTGGAGGAGATATGATGAA+TGG - chr3_4:60673644-60673663 Msa0511260:CDS 35.0%
AATGGAGGAAACAATAGCAA+TGG - chr3_4:60673719-60673738 Msa0511260:intron 35.0%
TCCATATGATGCTAATGATG+AGG - chr3_4:60673778-60673797 Msa0511260:intron 35.0%
TCCTCATCATTAGCATCATA+TGG + chr3_4:60673782-60673801 None:intergenic 35.0%
! AGTGACAATAGTTTAGGGTT+TGG + chr3_4:60673830-60673849 None:intergenic 35.0%
AAAGGTCAGTCATTTGGATA+TGG - chr3_4:60673887-60673906 Msa0511260:intron 35.0%
AGTCATTTGGATATGGATCA+TGG - chr3_4:60673894-60673913 Msa0511260:intron 35.0%
AGTGGTATGATGAATGGTTA+TGG - chr3_4:60673917-60673936 Msa0511260:intron 35.0%
ACAACAAACCCTTTGATCAA+CGG - chr3_4:60673947-60673966 Msa0511260:intron 35.0%
ACATAAAGTCTTTGTATGGG+AGG - chr3_4:60674049-60674068 Msa0511260:intron 35.0%
CATAAAGTCTTTGTATGGGA+GGG - chr3_4:60674050-60674069 Msa0511260:intron 35.0%
CTACTGAATTAACCAAGAGA+TGG - chr3_4:60674147-60674166 Msa0511260:intron 35.0%
TATGCTGTAATGTAACATCG+AGG - chr3_4:60674291-60674310 Msa0511260:five_prime_UTR 35.0%
ATGTAACATCGAGGAAGATA+TGG - chr3_4:60674300-60674319 Msa0511260:five_prime_UTR 35.0%
CATCAAAAGAAAAGGAATGG+AGG + chr3_4:60674433-60674452 None:intergenic 35.0%
TGTTAAGTGAGAAGAGATAG+AGG + chr3_4:60672334-60672353 None:intergenic 35.0%
ATCCGAGAAGAAAATGAAAG+AGG + chr3_4:60672374-60672393 None:intergenic 35.0%
GTTATTGTCATTGCATTGCA+AGG + chr3_4:60672401-60672420 None:intergenic 35.0%
! ATCACACCTTGGACATTTTA+GGG + chr3_4:60673144-60673163 None:intergenic 35.0%
! AATCACACCTTGGACATTTT+AGG + chr3_4:60673145-60673164 None:intergenic 35.0%
!!! ATCTTTAGGGTTTTGATGGT+AGG + chr3_4:60673381-60673400 None:intergenic 35.0%
!!! GAAGATCTTTAGGGTTTTGA+TGG + chr3_4:60673385-60673404 None:intergenic 35.0%
GAGAACAAGTATAGCAATGT+TGG - chr3_4:60673488-60673507 Msa0511260:CDS 35.0%
CTTTCCATCATGAAGTCAAT+AGG + chr3_4:60673533-60673552 None:intergenic 35.0%
ATTGGAGGAGATATGATGAA+TGG - chr3_4:60673644-60673663 Msa0511260:CDS 35.0%
AATGGAGGAAACAATAGCAA+TGG - chr3_4:60673719-60673738 Msa0511260:intron 35.0%
TCCATATGATGCTAATGATG+AGG - chr3_4:60673778-60673797 Msa0511260:intron 35.0%
TCCTCATCATTAGCATCATA+TGG + chr3_4:60673782-60673801 None:intergenic 35.0%
! AGTGACAATAGTTTAGGGTT+TGG + chr3_4:60673830-60673849 None:intergenic 35.0%
AAAGGTCAGTCATTTGGATA+TGG - chr3_4:60673887-60673906 Msa0511260:intron 35.0%
AGTCATTTGGATATGGATCA+TGG - chr3_4:60673894-60673913 Msa0511260:intron 35.0%
AGTGGTATGATGAATGGTTA+TGG - chr3_4:60673917-60673936 Msa0511260:intron 35.0%
ACAACAAACCCTTTGATCAA+CGG - chr3_4:60673947-60673966 Msa0511260:intron 35.0%
ACATAAAGTCTTTGTATGGG+AGG - chr3_4:60674049-60674068 Msa0511260:intron 35.0%
CATAAAGTCTTTGTATGGGA+GGG - chr3_4:60674050-60674069 Msa0511260:intron 35.0%
CTACTGAATTAACCAAGAGA+TGG - chr3_4:60674147-60674166 Msa0511260:intron 35.0%
TATGCTGTAATGTAACATCG+AGG - chr3_4:60674291-60674310 Msa0511260:five_prime_UTR 35.0%
ATGTAACATCGAGGAAGATA+TGG - chr3_4:60674300-60674319 Msa0511260:five_prime_UTR 35.0%
CATCAAAAGAAAAGGAATGG+AGG + chr3_4:60674433-60674452 None:intergenic 35.0%
TTGTGTTGTGGTTGCTACAT+GGG + chr3_4:60672275-60672294 None:intergenic 40.0%
CATGTGTTTGTGTTGTGTTG+TGG + chr3_4:60672287-60672306 None:intergenic 40.0%
TTGTGATCAAGCAGTGTAGT+TGG + chr3_4:60672461-60672480 None:intergenic 40.0%
!! TCTGAGCTTGGCTTTTGAAT+GGG - chr3_4:60672482-60672501 Msa0511260:three_prime_UTR 40.0%
TTCTCTTCACGTCTGCAATA+TGG - chr3_4:60672511-60672530 Msa0511260:three_prime_UTR 40.0%
TGGAATCATCTGCAGATCAT+TGG - chr3_4:60672531-60672550 Msa0511260:three_prime_UTR 40.0%
AATTCACGATGAGTCAGGAA+TGG - chr3_4:60673028-60673047 Msa0511260:CDS 40.0%
GATTCATCTTCACCAATGTC+TGG - chr3_4:60673050-60673069 Msa0511260:CDS 40.0%
GTGACATGCTAACATGTTCA+AGG - chr3_4:60673072-60673091 Msa0511260:CDS 40.0%
!! CATTTTAGGGATAGGTCATG+TGG + chr3_4:60673131-60673150 None:intergenic 40.0%
ACCTATCCCTAAAATGTCCA+AGG - chr3_4:60673135-60673154 Msa0511260:CDS 40.0%
!! ACCTTGGACATTTTAGGGAT+AGG + chr3_4:60673139-60673158 None:intergenic 40.0%
ACTTCTGCAAGACTTGTAGA+AGG - chr3_4:60673219-60673238 Msa0511260:CDS 40.0%
! GCAAGACTTGTAGAAGGTAT+TGG - chr3_4:60673225-60673244 Msa0511260:CDS 40.0%
!! TGTAGAAGGTATTGGACCAA+AGG - chr3_4:60673233-60673252 Msa0511260:CDS 40.0%
!! TTAGGGTTTTGATGGTAGGA+AGG + chr3_4:60673377-60673396 None:intergenic 40.0%
! TTTGGAGCTAATGGAGCATT+AGG - chr3_4:60673449-60673468 Msa0511260:CDS 40.0%
TCATGAAGTCAATAGGCCTA+GGG + chr3_4:60673526-60673545 None:intergenic 40.0%
ATCATGAAGTCAATAGGCCT+AGG + chr3_4:60673527-60673546 None:intergenic 40.0%
!! TAGGCCTATTGACTTCATGA+TGG - chr3_4:60673526-60673545 Msa0511260:CDS 40.0%
GCATAATTGGGAGTAGTTCT+AGG - chr3_4:60673564-60673583 Msa0511260:CDS 40.0%
!! ATGAATATGGGTGTTGGGAT+TGG - chr3_4:60673626-60673645 Msa0511260:CDS 40.0%
! GGTGGAATGTCATTTAATGG+AGG - chr3_4:60673704-60673723 Msa0511260:intron 40.0%
TTTGGATATGGATCATGGAG+TGG - chr3_4:60673899-60673918 Msa0511260:intron 40.0%
TCATGGAGTGGTATGATGAA+TGG - chr3_4:60673911-60673930 Msa0511260:intron 40.0%
!! GTTGATCAAAGGGTTTGTTG+TGG + chr3_4:60673948-60673967 None:intergenic 40.0%
ATCCAAAAGGAAACACACCA+AGG + chr3_4:60674213-60674232 None:intergenic 40.0%
! AGCTCTTGGCACAAGTTTTA+AGG - chr3_4:60674457-60674476 Msa0511260:five_prime_UTR 40.0%
TTGTGTTGTGGTTGCTACAT+GGG + chr3_4:60672275-60672294 None:intergenic 40.0%
CATGTGTTTGTGTTGTGTTG+TGG + chr3_4:60672287-60672306 None:intergenic 40.0%
TTGTGATCAAGCAGTGTAGT+TGG + chr3_4:60672461-60672480 None:intergenic 40.0%
!! TCTGAGCTTGGCTTTTGAAT+GGG - chr3_4:60672482-60672501 Msa0511260:three_prime_UTR 40.0%
TTCTCTTCACGTCTGCAATA+TGG - chr3_4:60672511-60672530 Msa0511260:three_prime_UTR 40.0%
TGGAATCATCTGCAGATCAT+TGG - chr3_4:60672531-60672550 Msa0511260:three_prime_UTR 40.0%
AATTCACGATGAGTCAGGAA+TGG - chr3_4:60673028-60673047 Msa0511260:CDS 40.0%
GATTCATCTTCACCAATGTC+TGG - chr3_4:60673050-60673069 Msa0511260:CDS 40.0%
GTGACATGCTAACATGTTCA+AGG - chr3_4:60673072-60673091 Msa0511260:CDS 40.0%
!! CATTTTAGGGATAGGTCATG+TGG + chr3_4:60673131-60673150 None:intergenic 40.0%
ACCTATCCCTAAAATGTCCA+AGG - chr3_4:60673135-60673154 Msa0511260:CDS 40.0%
!! ACCTTGGACATTTTAGGGAT+AGG + chr3_4:60673139-60673158 None:intergenic 40.0%
ACTTCTGCAAGACTTGTAGA+AGG - chr3_4:60673219-60673238 Msa0511260:CDS 40.0%
! GCAAGACTTGTAGAAGGTAT+TGG - chr3_4:60673225-60673244 Msa0511260:CDS 40.0%
!! TGTAGAAGGTATTGGACCAA+AGG - chr3_4:60673233-60673252 Msa0511260:CDS 40.0%
!! TTAGGGTTTTGATGGTAGGA+AGG + chr3_4:60673377-60673396 None:intergenic 40.0%
! TTTGGAGCTAATGGAGCATT+AGG - chr3_4:60673449-60673468 Msa0511260:CDS 40.0%
TCATGAAGTCAATAGGCCTA+GGG + chr3_4:60673526-60673545 None:intergenic 40.0%
ATCATGAAGTCAATAGGCCT+AGG + chr3_4:60673527-60673546 None:intergenic 40.0%
!! TAGGCCTATTGACTTCATGA+TGG - chr3_4:60673526-60673545 Msa0511260:CDS 40.0%
GCATAATTGGGAGTAGTTCT+AGG - chr3_4:60673564-60673583 Msa0511260:CDS 40.0%
!! ATGAATATGGGTGTTGGGAT+TGG - chr3_4:60673626-60673645 Msa0511260:CDS 40.0%
! GGTGGAATGTCATTTAATGG+AGG - chr3_4:60673704-60673723 Msa0511260:intron 40.0%
TTTGGATATGGATCATGGAG+TGG - chr3_4:60673899-60673918 Msa0511260:intron 40.0%
TCATGGAGTGGTATGATGAA+TGG - chr3_4:60673911-60673930 Msa0511260:intron 40.0%
!! GTTGATCAAAGGGTTTGTTG+TGG + chr3_4:60673948-60673967 None:intergenic 40.0%
ATCCAAAAGGAAACACACCA+AGG + chr3_4:60674213-60674232 None:intergenic 40.0%
! AGCTCTTGGCACAAGTTTTA+AGG - chr3_4:60674457-60674476 Msa0511260:five_prime_UTR 40.0%
GTTGTGTTGTGGTTGCTACA+TGG + chr3_4:60672276-60672295 None:intergenic 45.0%
CTTGATCACAACTCTGAGCT+TGG - chr3_4:60672470-60672489 Msa0511260:three_prime_UTR 45.0%
!! CTCTGAGCTTGGCTTTTGAA+TGG - chr3_4:60672481-60672500 Msa0511260:three_prime_UTR 45.0%
! ATCTGCAGATCATTGGTTGC+AGG - chr3_4:60672538-60672557 Msa0511260:three_prime_UTR 45.0%
GTTAGCATGTCACCAGACAT+TGG + chr3_4:60673065-60673084 None:intergenic 45.0%
CTCCTCTCTATCATGGATGA+TGG + chr3_4:60673098-60673117 None:intergenic 45.0%
CATCATCCATGATAGAGAGG+AGG - chr3_4:60673096-60673115 Msa0511260:CDS 45.0%
TCTTAGCCTCCTCTCTATCA+TGG + chr3_4:60673105-60673124 None:intergenic 45.0%
TTTAGGGATAGGTCATGTGG+TGG + chr3_4:60673128-60673147 None:intergenic 45.0%
! GTGTGAGTTGAATCACACCT+TGG + chr3_4:60673155-60673174 None:intergenic 45.0%
!! CAAGTCTTGCAGAAGTACCT+TGG + chr3_4:60673215-60673234 None:intergenic 45.0%
!! AGAAGGTATTGGACCAAAGG+AGG - chr3_4:60673236-60673255 Msa0511260:CDS 45.0%
GTTCCTAAGTGTTCCTCCTT+TGG + chr3_4:60673252-60673271 None:intergenic 45.0%
ACACTTAGGAACATCCCTGT+TGG - chr3_4:60673260-60673279 Msa0511260:CDS 45.0%
! AGGAAGGTACATGATGTGGT+TGG + chr3_4:60673361-60673380 None:intergenic 45.0%
! TGGTAGGAAGGTACATGATG+TGG + chr3_4:60673365-60673384 None:intergenic 45.0%
GGTGAGAGAATTGCACATCA+GGG + chr3_4:60673418-60673437 None:intergenic 45.0%
AGGTGAGAGAATTGCACATC+AGG + chr3_4:60673419-60673438 None:intergenic 45.0%
TTGGCATGCTTGAAAACCCT+AGG - chr3_4:60673507-60673526 Msa0511260:CDS 45.0%
!! AATATGGGTGTTGGGATTGG+AGG - chr3_4:60673629-60673648 Msa0511260:CDS 45.0%
CTTGAATGGCAGCAAGATCA+AGG - chr3_4:60673848-60673867 Msa0511260:intron 45.0%
GCTGGAAAAGGTCAGTCATT+TGG - chr3_4:60673881-60673900 Msa0511260:intron 45.0%
GAGCTTAGCCGTTGATCAAA+GGG + chr3_4:60673958-60673977 None:intergenic 45.0%
AGAGCTTAGCCGTTGATCAA+AGG + chr3_4:60673959-60673978 None:intergenic 45.0%
AGAGTCCAAATCTACTGCCT+TGG - chr3_4:60674193-60674212 Msa0511260:CDS 45.0%
ACACACCAAGGCAGTAGATT+TGG + chr3_4:60674201-60674220 None:intergenic 45.0%
!! TGCCTTGGTGTGTTTCCTTT+TGG - chr3_4:60674208-60674227 Msa0511260:CDS 45.0%
GTTGTGTTGTGGTTGCTACA+TGG + chr3_4:60672276-60672295 None:intergenic 45.0%
CTTGATCACAACTCTGAGCT+TGG - chr3_4:60672470-60672489 Msa0511260:three_prime_UTR 45.0%
!! CTCTGAGCTTGGCTTTTGAA+TGG - chr3_4:60672481-60672500 Msa0511260:three_prime_UTR 45.0%
! ATCTGCAGATCATTGGTTGC+AGG - chr3_4:60672538-60672557 Msa0511260:three_prime_UTR 45.0%
GTTAGCATGTCACCAGACAT+TGG + chr3_4:60673065-60673084 None:intergenic 45.0%
CTCCTCTCTATCATGGATGA+TGG + chr3_4:60673098-60673117 None:intergenic 45.0%
CATCATCCATGATAGAGAGG+AGG - chr3_4:60673096-60673115 Msa0511260:CDS 45.0%
TCTTAGCCTCCTCTCTATCA+TGG + chr3_4:60673105-60673124 None:intergenic 45.0%
TTTAGGGATAGGTCATGTGG+TGG + chr3_4:60673128-60673147 None:intergenic 45.0%
! GTGTGAGTTGAATCACACCT+TGG + chr3_4:60673155-60673174 None:intergenic 45.0%
!! CAAGTCTTGCAGAAGTACCT+TGG + chr3_4:60673215-60673234 None:intergenic 45.0%
!! AGAAGGTATTGGACCAAAGG+AGG - chr3_4:60673236-60673255 Msa0511260:CDS 45.0%
GTTCCTAAGTGTTCCTCCTT+TGG + chr3_4:60673252-60673271 None:intergenic 45.0%
ACACTTAGGAACATCCCTGT+TGG - chr3_4:60673260-60673279 Msa0511260:CDS 45.0%
! AGGAAGGTACATGATGTGGT+TGG + chr3_4:60673361-60673380 None:intergenic 45.0%
! TGGTAGGAAGGTACATGATG+TGG + chr3_4:60673365-60673384 None:intergenic 45.0%
GGTGAGAGAATTGCACATCA+GGG + chr3_4:60673418-60673437 None:intergenic 45.0%
AGGTGAGAGAATTGCACATC+AGG + chr3_4:60673419-60673438 None:intergenic 45.0%
TTGGCATGCTTGAAAACCCT+AGG - chr3_4:60673507-60673526 Msa0511260:CDS 45.0%
!! AATATGGGTGTTGGGATTGG+AGG - chr3_4:60673629-60673648 Msa0511260:CDS 45.0%
CTTGAATGGCAGCAAGATCA+AGG - chr3_4:60673848-60673867 Msa0511260:intron 45.0%
GCTGGAAAAGGTCAGTCATT+TGG - chr3_4:60673881-60673900 Msa0511260:intron 45.0%
GAGCTTAGCCGTTGATCAAA+GGG + chr3_4:60673958-60673977 None:intergenic 45.0%
AGAGCTTAGCCGTTGATCAA+AGG + chr3_4:60673959-60673978 None:intergenic 45.0%
AGAGTCCAAATCTACTGCCT+TGG - chr3_4:60674193-60674212 Msa0511260:CDS 45.0%
ACACACCAAGGCAGTAGATT+TGG + chr3_4:60674201-60674220 None:intergenic 45.0%
!! TGCCTTGGTGTGTTTCCTTT+TGG - chr3_4:60674208-60674227 Msa0511260:CDS 45.0%
!! AAAAAAAAAAAAAAAATACA+TGG + chr3_4:60674084-60674103 None:intergenic 5.0%
!! AAAAAAAAAAAAAAAATACA+TGG + chr3_4:60674084-60674103 None:intergenic 5.0%
TTGTGGTTGCTACATGGGAC+GGG + chr3_4:60672270-60672289 None:intergenic 50.0%
GTTGTGGTTGCTACATGGGA+CGG + chr3_4:60672271-60672290 None:intergenic 50.0%
GGCACAATTCACGATGAGTC+AGG - chr3_4:60673023-60673042 Msa0511260:CDS 50.0%
GGCCATCATCCATGATAGAG+AGG - chr3_4:60673093-60673112 Msa0511260:CDS 50.0%
ACTACAGTCTCTCTCAGCCA+AGG - chr3_4:60673195-60673214 Msa0511260:CDS 50.0%
GGACCAAAGGAGGAACACTT+AGG - chr3_4:60673246-60673265 Msa0511260:CDS 50.0%
CTTAGGAACATCCCTGTTGG+TGG - chr3_4:60673263-60673282 Msa0511260:CDS 50.0%
TTCTACAGCCTCCACCAACA+GGG + chr3_4:60673277-60673296 None:intergenic 50.0%
TTTCTACAGCCTCCACCAAC+AGG + chr3_4:60673278-60673297 None:intergenic 50.0%
GATCAAGGTTGCTCTGATGC+TGG - chr3_4:60673863-60673882 Msa0511260:intron 50.0%
GGTTGCTCTGATGCTGGAAA+AGG - chr3_4:60673869-60673888 Msa0511260:intron 50.0%
TTCACACTCGACCCATCTCT+TGG + chr3_4:60674162-60674181 None:intergenic 50.0%
TCTTTGTGTGCGACACGTCA+TGG - chr3_4:60674251-60674270 Msa0511260:five_prime_UTR 50.0%
CGACACGTCATGGAAGCTTT+AGG - chr3_4:60674261-60674280 Msa0511260:five_prime_UTR 50.0%
TTGTGGTTGCTACATGGGAC+GGG + chr3_4:60672270-60672289 None:intergenic 50.0%
GTTGTGGTTGCTACATGGGA+CGG + chr3_4:60672271-60672290 None:intergenic 50.0%
GGCACAATTCACGATGAGTC+AGG - chr3_4:60673023-60673042 Msa0511260:CDS 50.0%
GGCCATCATCCATGATAGAG+AGG - chr3_4:60673093-60673112 Msa0511260:CDS 50.0%
ACTACAGTCTCTCTCAGCCA+AGG - chr3_4:60673195-60673214 Msa0511260:CDS 50.0%
GGACCAAAGGAGGAACACTT+AGG - chr3_4:60673246-60673265 Msa0511260:CDS 50.0%
CTTAGGAACATCCCTGTTGG+TGG - chr3_4:60673263-60673282 Msa0511260:CDS 50.0%
TTCTACAGCCTCCACCAACA+GGG + chr3_4:60673277-60673296 None:intergenic 50.0%
TTTCTACAGCCTCCACCAAC+AGG + chr3_4:60673278-60673297 None:intergenic 50.0%
GATCAAGGTTGCTCTGATGC+TGG - chr3_4:60673863-60673882 Msa0511260:intron 50.0%
GGTTGCTCTGATGCTGGAAA+AGG - chr3_4:60673869-60673888 Msa0511260:intron 50.0%
TTCACACTCGACCCATCTCT+TGG + chr3_4:60674162-60674181 None:intergenic 50.0%
TCTTTGTGTGCGACACGTCA+TGG - chr3_4:60674251-60674270 Msa0511260:five_prime_UTR 50.0%
CGACACGTCATGGAAGCTTT+AGG - chr3_4:60674261-60674280 Msa0511260:five_prime_UTR 50.0%
! AGGAACATCCCTGTTGGTGG+AGG - chr3_4:60673266-60673285 Msa0511260:CDS 55.0%
! AGGAACATCCCTGTTGGTGG+AGG - chr3_4:60673266-60673285 Msa0511260:CDS 55.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 60672262 60674481 60672262 ID=Msa0511260;Name=Msa0511260
chr3_4 mRNA 60672262 60674481 60672262 ID=Msa0511260-mRNA-1;Parent=Msa0511260;Name=Msa0511260-mRNA-1;_AED=0.00;_eAED=0.00;_QI=238|1|1|1|1|1|2|508|336
chr3_4 exon 60672262 60673720 60672262 ID=Msa0511260-mRNA-1:exon:14563;Parent=Msa0511260-mRNA-1
chr3_4 exon 60674184 60674481 60674184 ID=Msa0511260-mRNA-1:exon:14562;Parent=Msa0511260-mRNA-1
chr3_4 five_prime_UTR 60674244 60674481 60674244 ID=Msa0511260-mRNA-1:five_prime_utr;Parent=Msa0511260-mRNA-1
chr3_4 CDS 60674184 60674243 60674184 ID=Msa0511260-mRNA-1:cds;Parent=Msa0511260-mRNA-1
chr3_4 CDS 60672770 60673720 60672770 ID=Msa0511260-mRNA-1:cds;Parent=Msa0511260-mRNA-1
chr3_4 three_prime_UTR 60672262 60672769 60672262 ID=Msa0511260-mRNA-1:three_prime_utr;Parent=Msa0511260-mRNA-1
Gene Sequence

>Msa0511260

ATGGGTTTATCTTCTCTTCACGTCTGCAATATGGAATCATCTGCAGATCATTGGTTGCAGGGCACAATTCACGATGAGTCAGGAATGGATTCATCTTCACCAATGTCTGGTGACATGCTAACATGTTCAAGGCCATCATCCATGATAGAGAGGAGGCTAAGACCACCACATGACCTATCCCTAAAATGTCCAAGGTGTGATTCAACTCACACCAAATTCTGCTATTACAACAACTACAGTCTCTCTCAGCCAAGGTACTTCTGCAAGACTTGTAGAAGGTATTGGACCAAAGGAGGAACACTTAGGAACATCCCTGTTGGTGGAGGCTGTAGAAAAAACAAAAAAGTTTCTTCCAAAAAATCAAATGATCACTTAGCTAATAATAATATTCAAAACCAACCACATCATGTACCTTCCTACCATCAAAACCCTAAAGATCTTCAGCTTTCTTTCCCTGATGTGCAATTCTCTCACCTAAGTAACTTATTTGGAGCTAATGGAGCATTAGGAAACCCTAATTTCATGGAGAACAAGTATAGCAATGTTGGCATGCTTGAAAACCCTAGGCCTATTGACTTCATGATGGAAAGTAAGTTAGAAGGCATAATTGGGAGTAGTTCTAGGAATTTTGATAATTATTTTGGAAATAGTGATCATATGAATATGAATATGGGTGTTGGGATTGGAGGAGATATGATGAATGGACAAAATGGGTTGCCTCAGAATTTTCATCATGCATTTGGTGGAATGTCATTTAATGGAGGAAACAATAGCAATGGTGCTTATTTAATGGATTCTTGTCAAAGACTTATGCTTCCATATGATGCTAATGATGAGGATCATAATGCTTCAATTGATGTGAAGCCAAACCCTAAACTATTGTCACTTGAATGGCAGCAAGATCAAGGTTGCTCTGATGCTGGAAAAGGTCAGTCATTTGGATATGGATCATGGAGTGGTATGATGAATGGTTATGGATCTTCCACAACAAACCCTTTGATCAACGGCTAA
Protein sequence

>Msa0511260

MGLSSLHVCNMESSADHWLQGTIHDESGMDSSSPMSGDMLTCSRPSSMIERRLRPPHDLSLKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVSSKKSNDHLANNNIQNQPHHVPSYHQNPKDLQLSFPDVQFSHLSNLFGANGALGNPNFMENKYSNVGMLENPRPIDFMMESKLEGIIGSSSRNFDNYFGNSDHMNMNMGVGIGGDMMNGQNGLPQNFHHAFGGMSFNGGNNSNGAYLMDSCQRLMLPYDANDEDHNASIDVKPNPKLLSLEWQQDQGCSDAGKGQSFGYGSWSGMMNGYGSSTTNPLING*