Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0514980 | AES72186.1 | 92.623 | 122 | 8 | 1 | 1 | 122 | 1 | 121 | 5.53e-74 | 226 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0514980 | sp|Q9LFT5|EPFL1_ARATH | 47.573 | 103 | 44 | 3 | 26 | 122 | 24 | 122 | 2.12e-24 | 93.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0514980 | G7J3Q1 | 92.623 | 122 | 8 | 1 | 1 | 122 | 1 | 121 | 2.64e-74 | 226 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0373960 | Msa0514980 | 0.812021 | 5.227408e-51 | -8.615850e-47 |
| Msa0423100 | Msa0514980 | 0.808209 | 3.465359e-50 | -8.615850e-47 |
| Msa0469260 | Msa0514980 | 0.873827 | 1.087634e-67 | -8.615850e-47 |
| Msa0514980 | Msa0742180 | 0.815626 | 8.393861e-52 | -8.615850e-47 |
| Msa0514980 | Msa0823400 | 0.823418 | 1.400360e-53 | -8.615850e-47 |
| Msa0514980 | Msa0941820 | 0.802145 | 6.447174e-49 | -8.615850e-47 |
| Msa0514980 | Msa1435480 | 0.848559 | 5.673394e-60 | -8.615850e-47 |
| Msa0514980 | Msa1458910 | 0.808166 | 3.539223e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0514980 | MtrunA17_Chr3g0123851 | 92.623 | 122 | 8 | 1 | 1 | 122 | 1 | 121 | 5.08e-78 | 226 |
| Msa0514980 | MtrunA17_Chr8g0381891 | 57.143 | 126 | 47 | 3 | 1 | 122 | 1 | 123 | 8.39e-35 | 116 |
| Msa0514980 | MtrunA17_Chr3g0140691 | 41.860 | 86 | 38 | 2 | 40 | 122 | 22 | 98 | 3.68e-16 | 68.6 |
| Msa0514980 | MtrunA17_Chr4g0054461 | 42.857 | 77 | 39 | 2 | 46 | 122 | 31 | 102 | 2.87e-14 | 63.5 |
| Msa0514980 | MtrunA17_Chr2g0330071 | 42.105 | 76 | 27 | 2 | 47 | 122 | 70 | 128 | 8.73e-14 | 63.2 |
| Msa0514980 | MtrunA17_Chr4g0063871 | 38.824 | 85 | 38 | 2 | 39 | 122 | 43 | 114 | 3.18e-13 | 61.2 |
| Msa0514980 | MtrunA17_Chr2g0333071 | 34.146 | 123 | 69 | 5 | 1 | 122 | 2 | 113 | 1.19e-12 | 59.7 |
| Msa0514980 | MtrunA17_Chr5g0400761 | 37.662 | 77 | 43 | 2 | 46 | 122 | 60 | 131 | 3.68e-12 | 58.9 |
| Msa0514980 | MtrunA17_Chr8g0342581 | 37.975 | 79 | 28 | 2 | 44 | 122 | 72 | 129 | 3.92e-11 | 56.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0514980 | AT5G10310.1 | 47.573 | 103 | 44 | 3 | 26 | 122 | 24 | 122 | 2.15e-25 | 93.2 |
| Msa0514980 | AT5G10310.2 | 48.837 | 86 | 35 | 2 | 42 | 122 | 47 | 128 | 4.66e-23 | 87.4 |
Find 46 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATATAACCTCATCTTGTTAA+TGG | 0.240049 | 3_4:+65945974 | Msa0514980:CDS |
| AAGAAACAATGAAATTTCTA+AGG | 0.259527 | 3_4:-65946622 | None:intergenic |
| ATCCGTTATTATTATTACCT+TGG | 0.417680 | 3_4:-65946543 | None:intergenic |
| GGTTGATAGAAGCAAGAAAC+TGG | 0.429204 | 3_4:-65946029 | None:intergenic |
| GGCTGAACATGTTCATGGCT+TGG | 0.438174 | 3_4:-65946472 | None:intergenic |
| TGTAGTGGAGGCTGAGAGAG+AGG | 0.450565 | 3_4:-65945647 | None:intergenic |
| GACCTGGCTGAACATGTTCA+TGG | 0.454543 | 3_4:-65946477 | None:intergenic |
| CTCCAAGGTAATAATAATAA+CGG | 0.464837 | 3_4:+65946541 | Msa0514980:CDS |
| TGTGTAGGGTTTATTATTTG+AGG | 0.467998 | 3_4:+65946369 | Msa0514980:intron |
| AAGAAACTGGACACAGTAGA+AGG | 0.491502 | 3_4:-65946016 | None:intergenic |
| CAATGGCATTTCCAACTCAA+TGG | 0.495776 | 3_4:-65946580 | None:intergenic |
| AAAGAAATTACCACCTTCCA+TGG | 0.501489 | 3_4:-65946518 | None:intergenic |
| GGAACTTGCACTGCCATGCA+TGG | 0.505648 | 3_4:-65946451 | None:intergenic |
| CACTGCCTCAACTTCATCCA+TGG | 0.509432 | 3_4:+65946501 | Msa0514980:CDS |
| AGGGAAAAGCCTACCCTTGG+AGG | 0.512819 | 3_4:-65946065 | None:intergenic |
| ATTTCTAAGGGTTGAAGAAG+TGG | 0.515036 | 3_4:-65946609 | None:intergenic |
| GGAGAGGGATAGTGTAGTGG+AGG | 0.517083 | 3_4:-65945659 | None:intergenic |
| CAAATTACAAGCCATTGAGT+TGG | 0.518087 | 3_4:+65946569 | Msa0514980:CDS |
| GGTAACAATTGTGTAGAGAA+AGG | 0.520211 | 3_4:-65945680 | None:intergenic |
| AAAGGAGAGGGATAGTGTAG+TGG | 0.532448 | 3_4:-65945662 | None:intergenic |
| GGTGGTAATTTCTTTCTCCA+AGG | 0.542564 | 3_4:+65946526 | Msa0514980:CDS |
| CACATTCTGCAATTCCTCCA+AGG | 0.543179 | 3_4:+65946051 | Msa0514980:CDS |
| AGAGAGAGGGTGCAGAGTGT+TGG | 0.547078 | 3_4:-65945633 | None:intergenic |
| AGAAACAATGAAATTTCTAA+GGG | 0.551654 | 3_4:-65946621 | None:intergenic |
| AGCCATGAACATGTTCAGCC+AGG | 0.557195 | 3_4:+65946475 | Msa0514980:CDS |
| GAAGTTGAGGCAGTGTGACC+TGG | 0.560053 | 3_4:-65946493 | None:intergenic |
| AATTGTGTAGAGAAAGGAGA+GGG | 0.568206 | 3_4:-65945674 | None:intergenic |
| ACCTTCCATGGATGAAGTTG+AGG | 0.576895 | 3_4:-65946506 | None:intergenic |
| GCCTCAACTTCATCCATGGA+AGG | 0.583985 | 3_4:+65946505 | Msa0514980:CDS |
| ATATGAATTAAATGAAGCCA+TGG | 0.598193 | 3_4:-65945955 | None:intergenic |
| TTACATTTGTTGTGACATGT+AGG | 0.598733 | 3_4:-65946418 | None:intergenic |
| TGATGACCATTAACAAGATG+AGG | 0.607087 | 3_4:-65945980 | None:intergenic |
| CATTTGTTGTGACATGTAGG+TGG | 0.607908 | 3_4:-65946415 | None:intergenic |
| GTAGTGGAGGCTGAGAGAGA+GGG | 0.615370 | 3_4:-65945646 | None:intergenic |
| TCAGCAGTGATTGTATACAT+TGG | 0.616295 | 3_4:+65946749 | Msa0514980:three_prime_UTR |
| TTGAGTTGGAAATGCCATTG+TGG | 0.619909 | 3_4:+65946583 | Msa0514980:CDS |
| TGAAGAAGTGGCCACCACAA+TGG | 0.621299 | 3_4:-65946597 | None:intergenic |
| TAACCAATGTCATCCATGCA+TGG | 0.626151 | 3_4:+65946438 | Msa0514980:CDS |
| ACATTCTGCAATTCCTCCAA+GGG | 0.630675 | 3_4:+65946052 | Msa0514980:CDS |
| ACATGATAGATAGATATCCA+TGG | 0.649649 | 3_4:+65945938 | Msa0514980:exon |
| AGTGTTGGCAGAAAAGTGAA+AGG | 0.656008 | 3_4:-65945618 | None:intergenic |
| TCAACTTCATCCATGGAAGG+TGG | 0.660618 | 3_4:+65946508 | Msa0514980:CDS |
| CTGCCATGCATGGATGACAT+TGG | 0.662535 | 3_4:-65946441 | None:intergenic |
| CTTGGAGGAATTGCAGAATG+TGG | 0.672231 | 3_4:-65946050 | None:intergenic |
| AGTTGGAAATGCCATTGTGG+TGG | 0.687706 | 3_4:+65946586 | Msa0514980:CDS |
| CAATTGTGTAGAGAAAGGAG+AGG | 0.717317 | 3_4:-65945675 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTTTGAATTCACTATAAAAT+TGG | - | chr3_4:65946271-65946290 | None:intergenic | 20.0% |
| !! | AGTTAACAAACTTAATTAAC+TGG | - | chr3_4:65946346-65946365 | None:intergenic | 20.0% |
| !! | AGAAACAATGAAATTTCTAA+GGG | - | chr3_4:65946624-65946643 | None:intergenic | 20.0% |
| !! | AAGAAACAATGAAATTTCTA+AGG | - | chr3_4:65946625-65946644 | None:intergenic | 20.0% |
| !! | GTTTGAATTCACTATAAAAT+TGG | - | chr3_4:65946271-65946290 | None:intergenic | 20.0% |
| !! | AGTTAACAAACTTAATTAAC+TGG | - | chr3_4:65946346-65946365 | None:intergenic | 20.0% |
| !! | AGAAACAATGAAATTTCTAA+GGG | - | chr3_4:65946624-65946643 | None:intergenic | 20.0% |
| !! | AAGAAACAATGAAATTTCTA+AGG | - | chr3_4:65946625-65946644 | None:intergenic | 20.0% |
| !!! | GTTTTTTTCTAGTTATGTGT+TGG | - | chr3_4:65945708-65945727 | None:intergenic | 25.0% |
| !! | AATGACAAACTTTTCATTCT+TGG | + | chr3_4:65945752-65945771 | Msa0514980:five_prime_UTR | 25.0% |
| !!! | TTATTTTGTCACATTACAAC+TGG | + | chr3_4:65945823-65945842 | Msa0514980:five_prime_UTR | 25.0% |
| ! | ATATGAATTAAATGAAGCCA+TGG | - | chr3_4:65945958-65945977 | None:intergenic | 25.0% |
| ! | ATATAACCTCATCTTGTTAA+TGG | + | chr3_4:65945974-65945993 | Msa0514980:CDS | 25.0% |
| !!! | TAGTTGGTTTTAAAAGGAAT+CGG | + | chr3_4:65946135-65946154 | Msa0514980:intron | 25.0% |
| !! | ACAGTATATTACTGTGATTT+TGG | + | chr3_4:65946193-65946212 | Msa0514980:intron | 25.0% |
| ! | TGAATTCACTATAAAATTGG+CGG | - | chr3_4:65946268-65946287 | None:intergenic | 25.0% |
| ! | TATTATTTGAGGAGAAAAAC+AGG | + | chr3_4:65946380-65946399 | Msa0514980:CDS | 25.0% |
| ! | CTCCAAGGTAATAATAATAA+CGG | + | chr3_4:65946541-65946560 | Msa0514980:CDS | 25.0% |
| ! | ATCCGTTATTATTATTACCT+TGG | - | chr3_4:65946546-65946565 | None:intergenic | 25.0% |
| !!! | GTTTTTTTCTAGTTATGTGT+TGG | - | chr3_4:65945708-65945727 | None:intergenic | 25.0% |
| !! | AATGACAAACTTTTCATTCT+TGG | + | chr3_4:65945752-65945771 | Msa0514980:five_prime_UTR | 25.0% |
| !!! | TTATTTTGTCACATTACAAC+TGG | + | chr3_4:65945823-65945842 | Msa0514980:five_prime_UTR | 25.0% |
| ! | ATATGAATTAAATGAAGCCA+TGG | - | chr3_4:65945958-65945977 | None:intergenic | 25.0% |
| ! | ATATAACCTCATCTTGTTAA+TGG | + | chr3_4:65945974-65945993 | Msa0514980:CDS | 25.0% |
| !!! | TAGTTGGTTTTAAAAGGAAT+CGG | + | chr3_4:65946135-65946154 | Msa0514980:intron | 25.0% |
| !! | ACAGTATATTACTGTGATTT+TGG | + | chr3_4:65946193-65946212 | Msa0514980:intron | 25.0% |
| ! | TGAATTCACTATAAAATTGG+CGG | - | chr3_4:65946268-65946287 | None:intergenic | 25.0% |
| ! | TATTATTTGAGGAGAAAAAC+AGG | + | chr3_4:65946380-65946399 | Msa0514980:CDS | 25.0% |
| ! | CTCCAAGGTAATAATAATAA+CGG | + | chr3_4:65946541-65946560 | Msa0514980:CDS | 25.0% |
| ! | ATCCGTTATTATTATTACCT+TGG | - | chr3_4:65946546-65946565 | None:intergenic | 25.0% |
| !!! | ATCTAGTTTTGAGCAATGAA+TGG | - | chr3_4:65945730-65945749 | None:intergenic | 30.0% |
| ACATGATAGATAGATATCCA+TGG | + | chr3_4:65945938-65945957 | Msa0514980:exon | 30.0% | |
| TTATGTGTATGTTGCATAGT+TGG | + | chr3_4:65946119-65946138 | Msa0514980:intron | 30.0% | |
| !!! | GTTGCATAGTTGGTTTTAAA+AGG | + | chr3_4:65946129-65946148 | Msa0514980:intron | 30.0% |
| ACAGTAATATACTGTGATTC+TGG | - | chr3_4:65946188-65946207 | None:intergenic | 30.0% | |
| ! | ATCCTCATTTTGTTGAAACT+TGG | - | chr3_4:65946299-65946318 | None:intergenic | 30.0% |
| ACTTAATTAACTGGTGAGTT+TGG | - | chr3_4:65946337-65946356 | None:intergenic | 30.0% | |
| !! | AGTTTGTTAACTATGTGTGT+AGG | + | chr3_4:65946354-65946373 | Msa0514980:intron | 30.0% |
| ! | GTTTGTTAACTATGTGTGTA+GGG | + | chr3_4:65946355-65946374 | Msa0514980:intron | 30.0% |
| TGTGTAGGGTTTATTATTTG+AGG | + | chr3_4:65946369-65946388 | Msa0514980:intron | 30.0% | |
| !! | TTACATTTGTTGTGACATGT+AGG | - | chr3_4:65946421-65946440 | None:intergenic | 30.0% |
| !!! | ATCTAGTTTTGAGCAATGAA+TGG | - | chr3_4:65945730-65945749 | None:intergenic | 30.0% |
| ACATGATAGATAGATATCCA+TGG | + | chr3_4:65945938-65945957 | Msa0514980:exon | 30.0% | |
| TTATGTGTATGTTGCATAGT+TGG | + | chr3_4:65946119-65946138 | Msa0514980:intron | 30.0% | |
| !!! | GTTGCATAGTTGGTTTTAAA+AGG | + | chr3_4:65946129-65946148 | Msa0514980:intron | 30.0% |
| ACAGTAATATACTGTGATTC+TGG | - | chr3_4:65946188-65946207 | None:intergenic | 30.0% | |
| ! | ATCCTCATTTTGTTGAAACT+TGG | - | chr3_4:65946299-65946318 | None:intergenic | 30.0% |
| ACTTAATTAACTGGTGAGTT+TGG | - | chr3_4:65946337-65946356 | None:intergenic | 30.0% | |
| !! | AGTTTGTTAACTATGTGTGT+AGG | + | chr3_4:65946354-65946373 | Msa0514980:intron | 30.0% |
| ! | GTTTGTTAACTATGTGTGTA+GGG | + | chr3_4:65946355-65946374 | Msa0514980:intron | 30.0% |
| TGTGTAGGGTTTATTATTTG+AGG | + | chr3_4:65946369-65946388 | Msa0514980:intron | 30.0% | |
| !! | TTACATTTGTTGTGACATGT+AGG | - | chr3_4:65946421-65946440 | None:intergenic | 30.0% |
| AATTGTGTAGAGAAAGGAGA+GGG | - | chr3_4:65945677-65945696 | None:intergenic | 35.0% | |
| GGTAACAATTGTGTAGAGAA+AGG | - | chr3_4:65945683-65945702 | None:intergenic | 35.0% | |
| !!! | TTTTCTAGTTATGTGTTGGC+AGG | - | chr3_4:65945704-65945723 | None:intergenic | 35.0% |
| TGATGACCATTAACAAGATG+AGG | - | chr3_4:65945983-65946002 | None:intergenic | 35.0% | |
| AGTGAATGAGGGAGAAAAAA+GGG | - | chr3_4:65946087-65946106 | None:intergenic | 35.0% | |
| GCAACATACACATAAAGCAA+AGG | - | chr3_4:65946114-65946133 | None:intergenic | 35.0% | |
| AATTGGCGGAAACTATACTT+CGG | - | chr3_4:65946254-65946273 | None:intergenic | 35.0% | |
| CACCAAGTTTCAACAAAATG+AGG | + | chr3_4:65946294-65946313 | Msa0514980:intron | 35.0% | |
| TTTGAGGAGAAAAACAGGTT+AGG | + | chr3_4:65946385-65946404 | Msa0514980:CDS | 35.0% | |
| AAAGAAATTACCACCTTCCA+TGG | - | chr3_4:65946521-65946540 | None:intergenic | 35.0% | |
| CAAATTACAAGCCATTGAGT+TGG | + | chr3_4:65946569-65946588 | Msa0514980:CDS | 35.0% | |
| ! | ATTTCTAAGGGTTGAAGAAG+TGG | - | chr3_4:65946612-65946631 | None:intergenic | 35.0% |
| TCAGCAGTGATTGTATACAT+TGG | + | chr3_4:65946749-65946768 | Msa0514980:three_prime_UTR | 35.0% | |
| AATTGTGTAGAGAAAGGAGA+GGG | - | chr3_4:65945677-65945696 | None:intergenic | 35.0% | |
| GGTAACAATTGTGTAGAGAA+AGG | - | chr3_4:65945683-65945702 | None:intergenic | 35.0% | |
| !!! | TTTTCTAGTTATGTGTTGGC+AGG | - | chr3_4:65945704-65945723 | None:intergenic | 35.0% |
| TGATGACCATTAACAAGATG+AGG | - | chr3_4:65945983-65946002 | None:intergenic | 35.0% | |
| AGTGAATGAGGGAGAAAAAA+GGG | - | chr3_4:65946087-65946106 | None:intergenic | 35.0% | |
| GCAACATACACATAAAGCAA+AGG | - | chr3_4:65946114-65946133 | None:intergenic | 35.0% | |
| AATTGGCGGAAACTATACTT+CGG | - | chr3_4:65946254-65946273 | None:intergenic | 35.0% | |
| CACCAAGTTTCAACAAAATG+AGG | + | chr3_4:65946294-65946313 | Msa0514980:intron | 35.0% | |
| TTTGAGGAGAAAAACAGGTT+AGG | + | chr3_4:65946385-65946404 | Msa0514980:CDS | 35.0% | |
| AAAGAAATTACCACCTTCCA+TGG | - | chr3_4:65946521-65946540 | None:intergenic | 35.0% | |
| CAAATTACAAGCCATTGAGT+TGG | + | chr3_4:65946569-65946588 | Msa0514980:CDS | 35.0% | |
| ! | ATTTCTAAGGGTTGAAGAAG+TGG | - | chr3_4:65946612-65946631 | None:intergenic | 35.0% |
| TCAGCAGTGATTGTATACAT+TGG | + | chr3_4:65946749-65946768 | Msa0514980:three_prime_UTR | 35.0% | |
| CAATTGTGTAGAGAAAGGAG+AGG | - | chr3_4:65945678-65945697 | None:intergenic | 40.0% | |
| AAGAAACTGGACACAGTAGA+AGG | - | chr3_4:65946019-65946038 | None:intergenic | 40.0% | |
| !! | GGTTGATAGAAGCAAGAAAC+TGG | - | chr3_4:65946032-65946051 | None:intergenic | 40.0% |
| ACATTCTGCAATTCCTCCAA+GGG | + | chr3_4:65946052-65946071 | Msa0514980:CDS | 40.0% | |
| GAGTGAATGAGGGAGAAAAA+AGG | - | chr3_4:65946088-65946107 | None:intergenic | 40.0% | |
| GCAAAGGAAAGAGTGAATGA+GGG | - | chr3_4:65946098-65946117 | None:intergenic | 40.0% | |
| AGCAAAGGAAAGAGTGAATG+AGG | - | chr3_4:65946099-65946118 | None:intergenic | 40.0% | |
| CTTCGGAGCTTCAACAAAAT+CGG | - | chr3_4:65946237-65946256 | None:intergenic | 40.0% | |
| TGGTGAGTTTGGCAAAATCA+AGG | - | chr3_4:65946326-65946345 | None:intergenic | 40.0% | |
| !! | CATTTGTTGTGACATGTAGG+TGG | - | chr3_4:65946418-65946437 | None:intergenic | 40.0% |
| TAACCAATGTCATCCATGCA+TGG | + | chr3_4:65946438-65946457 | Msa0514980:CDS | 40.0% | |
| GGTGGTAATTTCTTTCTCCA+AGG | + | chr3_4:65946526-65946545 | Msa0514980:CDS | 40.0% | |
| CAATGGCATTTCCAACTCAA+TGG | - | chr3_4:65946583-65946602 | None:intergenic | 40.0% | |
| !! | TTGAGTTGGAAATGCCATTG+TGG | + | chr3_4:65946583-65946602 | Msa0514980:CDS | 40.0% |
| CAATTGTGTAGAGAAAGGAG+AGG | - | chr3_4:65945678-65945697 | None:intergenic | 40.0% | |
| AAGAAACTGGACACAGTAGA+AGG | - | chr3_4:65946019-65946038 | None:intergenic | 40.0% | |
| !! | GGTTGATAGAAGCAAGAAAC+TGG | - | chr3_4:65946032-65946051 | None:intergenic | 40.0% |
| ACATTCTGCAATTCCTCCAA+GGG | + | chr3_4:65946052-65946071 | Msa0514980:CDS | 40.0% | |
| GAGTGAATGAGGGAGAAAAA+AGG | - | chr3_4:65946088-65946107 | None:intergenic | 40.0% | |
| GCAAAGGAAAGAGTGAATGA+GGG | - | chr3_4:65946098-65946117 | None:intergenic | 40.0% | |
| AGCAAAGGAAAGAGTGAATG+AGG | - | chr3_4:65946099-65946118 | None:intergenic | 40.0% | |
| CTTCGGAGCTTCAACAAAAT+CGG | - | chr3_4:65946237-65946256 | None:intergenic | 40.0% | |
| TGGTGAGTTTGGCAAAATCA+AGG | - | chr3_4:65946326-65946345 | None:intergenic | 40.0% | |
| !! | CATTTGTTGTGACATGTAGG+TGG | - | chr3_4:65946418-65946437 | None:intergenic | 40.0% |
| TAACCAATGTCATCCATGCA+TGG | + | chr3_4:65946438-65946457 | Msa0514980:CDS | 40.0% | |
| GGTGGTAATTTCTTTCTCCA+AGG | + | chr3_4:65946526-65946545 | Msa0514980:CDS | 40.0% | |
| CAATGGCATTTCCAACTCAA+TGG | - | chr3_4:65946583-65946602 | None:intergenic | 40.0% | |
| !! | TTGAGTTGGAAATGCCATTG+TGG | + | chr3_4:65946583-65946602 | Msa0514980:CDS | 40.0% |
| AAAGGAGAGGGATAGTGTAG+TGG | - | chr3_4:65945665-65945684 | None:intergenic | 45.0% | |
| CTTGGAGGAATTGCAGAATG+TGG | - | chr3_4:65946053-65946072 | None:intergenic | 45.0% | |
| CACATTCTGCAATTCCTCCA+AGG | + | chr3_4:65946051-65946070 | Msa0514980:CDS | 45.0% | |
| AAAAGGGAAAAGCCTACCCT+TGG | - | chr3_4:65946071-65946090 | None:intergenic | 45.0% | |
| GGAATCGGTGCATGTTTGAA+TGG | + | chr3_4:65946150-65946169 | Msa0514980:intron | 45.0% | |
| TCGGTGCATGTTTGAATGGA+CGG | + | chr3_4:65946154-65946173 | Msa0514980:intron | 45.0% | |
| ACCTTCCATGGATGAAGTTG+AGG | - | chr3_4:65946509-65946528 | None:intergenic | 45.0% | |
| TCAACTTCATCCATGGAAGG+TGG | + | chr3_4:65946508-65946527 | Msa0514980:CDS | 45.0% | |
| AGTTGGAAATGCCATTGTGG+TGG | + | chr3_4:65946586-65946605 | Msa0514980:CDS | 45.0% | |
| AAAGGAGAGGGATAGTGTAG+TGG | - | chr3_4:65945665-65945684 | None:intergenic | 45.0% | |
| CTTGGAGGAATTGCAGAATG+TGG | - | chr3_4:65946053-65946072 | None:intergenic | 45.0% | |
| CACATTCTGCAATTCCTCCA+AGG | + | chr3_4:65946051-65946070 | Msa0514980:CDS | 45.0% | |
| AAAAGGGAAAAGCCTACCCT+TGG | - | chr3_4:65946071-65946090 | None:intergenic | 45.0% | |
| GGAATCGGTGCATGTTTGAA+TGG | + | chr3_4:65946150-65946169 | Msa0514980:intron | 45.0% | |
| TCGGTGCATGTTTGAATGGA+CGG | + | chr3_4:65946154-65946173 | Msa0514980:intron | 45.0% | |
| ACCTTCCATGGATGAAGTTG+AGG | - | chr3_4:65946509-65946528 | None:intergenic | 45.0% | |
| TCAACTTCATCCATGGAAGG+TGG | + | chr3_4:65946508-65946527 | Msa0514980:CDS | 45.0% | |
| AGTTGGAAATGCCATTGTGG+TGG | + | chr3_4:65946586-65946605 | Msa0514980:CDS | 45.0% | |
| !! | TAAATAAATAAAAACAAAAA+AGG | - | chr3_4:65946706-65946725 | None:intergenic | 5.0% |
| !! | TAAATAAATAAAAACAAAAA+AGG | - | chr3_4:65946706-65946725 | None:intergenic | 5.0% |
| TCTGCAATTCCTCCAAGGGT+AGG | + | chr3_4:65946056-65946075 | Msa0514980:intron | 50.0% | |
| CTGCCATGCATGGATGACAT+TGG | - | chr3_4:65946444-65946463 | None:intergenic | 50.0% | |
| GGCTGAACATGTTCATGGCT+TGG | - | chr3_4:65946475-65946494 | None:intergenic | 50.0% | |
| AGCCATGAACATGTTCAGCC+AGG | + | chr3_4:65946475-65946494 | Msa0514980:CDS | 50.0% | |
| GACCTGGCTGAACATGTTCA+TGG | - | chr3_4:65946480-65946499 | None:intergenic | 50.0% | |
| CACTGCCTCAACTTCATCCA+TGG | + | chr3_4:65946501-65946520 | Msa0514980:CDS | 50.0% | |
| GCCTCAACTTCATCCATGGA+AGG | + | chr3_4:65946505-65946524 | Msa0514980:CDS | 50.0% | |
| TGAAGAAGTGGCCACCACAA+TGG | - | chr3_4:65946600-65946619 | None:intergenic | 50.0% | |
| TCTGCAATTCCTCCAAGGGT+AGG | + | chr3_4:65946056-65946075 | Msa0514980:intron | 50.0% | |
| CTGCCATGCATGGATGACAT+TGG | - | chr3_4:65946444-65946463 | None:intergenic | 50.0% | |
| GGCTGAACATGTTCATGGCT+TGG | - | chr3_4:65946475-65946494 | None:intergenic | 50.0% | |
| AGCCATGAACATGTTCAGCC+AGG | + | chr3_4:65946475-65946494 | Msa0514980:CDS | 50.0% | |
| GACCTGGCTGAACATGTTCA+TGG | - | chr3_4:65946480-65946499 | None:intergenic | 50.0% | |
| CACTGCCTCAACTTCATCCA+TGG | + | chr3_4:65946501-65946520 | Msa0514980:CDS | 50.0% | |
| GCCTCAACTTCATCCATGGA+AGG | + | chr3_4:65946505-65946524 | Msa0514980:CDS | 50.0% | |
| TGAAGAAGTGGCCACCACAA+TGG | - | chr3_4:65946600-65946619 | None:intergenic | 50.0% | |
| ! | AGAGAGAGGGTGCAGAGTGT+TGG | - | chr3_4:65945636-65945655 | None:intergenic | 55.0% |
| ! | GTAGTGGAGGCTGAGAGAGA+GGG | - | chr3_4:65945649-65945668 | None:intergenic | 55.0% |
| ! | TGTAGTGGAGGCTGAGAGAG+AGG | - | chr3_4:65945650-65945669 | None:intergenic | 55.0% |
| GGAGAGGGATAGTGTAGTGG+AGG | - | chr3_4:65945662-65945681 | None:intergenic | 55.0% | |
| AGGGAAAAGCCTACCCTTGG+AGG | - | chr3_4:65946068-65946087 | None:intergenic | 55.0% | |
| GGAACTTGCACTGCCATGCA+TGG | - | chr3_4:65946454-65946473 | None:intergenic | 55.0% | |
| GAAGTTGAGGCAGTGTGACC+TGG | - | chr3_4:65946496-65946515 | None:intergenic | 55.0% | |
| ! | AGAGAGAGGGTGCAGAGTGT+TGG | - | chr3_4:65945636-65945655 | None:intergenic | 55.0% |
| ! | GTAGTGGAGGCTGAGAGAGA+GGG | - | chr3_4:65945649-65945668 | None:intergenic | 55.0% |
| ! | TGTAGTGGAGGCTGAGAGAG+AGG | - | chr3_4:65945650-65945669 | None:intergenic | 55.0% |
| GGAGAGGGATAGTGTAGTGG+AGG | - | chr3_4:65945662-65945681 | None:intergenic | 55.0% | |
| AGGGAAAAGCCTACCCTTGG+AGG | - | chr3_4:65946068-65946087 | None:intergenic | 55.0% | |
| GGAACTTGCACTGCCATGCA+TGG | - | chr3_4:65946454-65946473 | None:intergenic | 55.0% | |
| GAAGTTGAGGCAGTGTGACC+TGG | - | chr3_4:65946496-65946515 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 65945620 | 65946798 | 65945620 | ID=Msa0514980;Name=Msa0514980 |
| chr3_4 | mRNA | 65945620 | 65946798 | 65945620 | ID=Msa0514980-mRNA-1;Parent=Msa0514980;Name=Msa0514980-mRNA-1;_AED=0.00;_eAED=0.00;_QI=337|1|1|1|1|1|2|171|122 |
| chr3_4 | exon | 65945620 | 65946073 | 65945620 | ID=Msa0514980-mRNA-1:exon:16898;Parent=Msa0514980-mRNA-1 |
| chr3_4 | exon | 65946376 | 65946798 | 65946376 | ID=Msa0514980-mRNA-1:exon:16899;Parent=Msa0514980-mRNA-1 |
| chr3_4 | five_prime_UTR | 65945620 | 65945956 | 65945620 | ID=Msa0514980-mRNA-1:five_prime_utr;Parent=Msa0514980-mRNA-1 |
| chr3_4 | CDS | 65945957 | 65946073 | 65945957 | ID=Msa0514980-mRNA-1:cds;Parent=Msa0514980-mRNA-1 |
| chr3_4 | CDS | 65946376 | 65946627 | 65946376 | ID=Msa0514980-mRNA-1:cds;Parent=Msa0514980-mRNA-1 |
| chr3_4 | three_prime_UTR | 65946628 | 65946798 | 65946628 | ID=Msa0514980-mRNA-1:three_prime_utr;Parent=Msa0514980-mRNA-1 |
| Gene Sequence |
| Protein sequence |
