Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0742180 | XP_003617487.2 | 100.000 | 83 | 0 | 0 | 109 | 191 | 303 | 385 | 1.38e-48 | 172 |
| Msa0742180 | XP_003617487.2 | 94.737 | 114 | 6 | 0 | 1 | 114 | 1 | 114 | 8.14e-72 | 232 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0742180 | sp|Q1PDV6|PBL27_ARATH | 68.333 | 60 | 19 | 0 | 109 | 168 | 302 | 361 | 3.44e-20 | 90.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0742180 | I3T2D5 | 100.000 | 83 | 0 | 0 | 109 | 191 | 319 | 401 | 5.92e-49 | 173 |
| Msa0742180 | I3T2D5 | 94.495 | 109 | 6 | 0 | 6 | 114 | 22 | 130 | 2.38e-66 | 218 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002930 | Msa0742180 | 0.816422 | 5.576123e-52 | -8.615850e-47 |
| Msa0029910 | Msa0742180 | 0.816675 | 4.894786e-52 | -8.615850e-47 |
| Msa0036430 | Msa0742180 | 0.832745 | 7.934057e-56 | -8.615850e-47 |
| Msa0084500 | Msa0742180 | 0.838796 | 2.323883e-57 | -8.615850e-47 |
| Msa0667850 | Msa0742180 | 0.819458 | 1.149393e-52 | -8.615850e-47 |
| Msa0669840 | Msa0742180 | 0.807119 | 5.906054e-50 | -8.615850e-47 |
| Msa0725860 | Msa0742180 | 0.803172 | 3.957140e-49 | -8.615850e-47 |
| Msa0741900 | Msa0742180 | 0.810578 | 1.075275e-50 | -8.615850e-47 |
| Msa0742180 | Msa0786040 | 0.853492 | 2.305754e-61 | -8.615850e-47 |
| Msa0742180 | Msa0819900 | 0.824875 | 6.367871e-54 | -8.615850e-47 |
| Msa0742180 | Msa0823400 | 0.921938 | 1.878375e-88 | -8.615850e-47 |
| Msa0742180 | Msa0860170 | 0.831581 | 1.539059e-55 | -8.615850e-47 |
| Msa0742180 | Msa0862310 | 0.862702 | 4.203797e-64 | -8.615850e-47 |
| Msa0742180 | Msa0867350 | 0.822562 | 2.217177e-53 | -8.615850e-47 |
| Msa0742180 | Msa0885060 | 0.842514 | 2.468863e-58 | -8.615850e-47 |
| Msa0742180 | Msa0896350 | 0.809215 | 2.112976e-50 | -8.615850e-47 |
| Msa0742180 | Msa0898730 | 0.831511 | 1.601520e-55 | -8.615850e-47 |
| Msa0742180 | Msa0922750 | 0.811847 | 5.703952e-51 | -8.615850e-47 |
| Msa0742180 | Msa0929870 | 0.832590 | 8.665716e-56 | -8.615850e-47 |
| Msa0742180 | Msa0936410 | 0.841854 | 3.690512e-58 | -8.615850e-47 |
| Msa0742180 | Msa0941820 | 0.820874 | 5.446032e-53 | -8.615850e-47 |
| Msa0742180 | Msa0961560 | 0.817728 | 2.836452e-52 | -8.615850e-47 |
| Msa0742180 | Msa0965310 | 0.814440 | 1.539120e-51 | -8.615850e-47 |
| Msa0742180 | Msa0973250 | 0.825599 | 4.294368e-54 | -8.615850e-47 |
| Msa0742180 | Msa0979510 | 0.804953 | 1.686141e-49 | -8.615850e-47 |
| Msa0742180 | Msa0996270 | 0.837916 | 3.919875e-57 | -8.615850e-47 |
| Msa0742180 | Msa0999300 | 0.816833 | 4.510317e-52 | -8.615850e-47 |
| Msa0742180 | Msa0999340 | 0.833910 | 4.064604e-56 | -8.615850e-47 |
| Msa0742180 | Msa0999350 | 0.823012 | 1.741691e-53 | -8.615850e-47 |
| Msa0742180 | Msa0999390 | 0.814585 | 1.429559e-51 | -8.615850e-47 |
| Msa0742180 | Msa0999400 | 0.812552 | 4.003799e-51 | -8.615850e-47 |
| Msa0742180 | Msa1033560 | 0.802803 | 4.717748e-49 | -8.615850e-47 |
| Msa0742180 | Msa1042670 | 0.804988 | 1.658146e-49 | -8.615850e-47 |
| Msa0742180 | Msa1073340 | 0.839811 | 1.267032e-57 | -8.615850e-47 |
| Msa0742180 | Msa1092020 | 0.812282 | 4.584909e-51 | -8.615850e-47 |
| Msa0742180 | Msa1113850 | 0.826476 | 2.657400e-54 | -8.615850e-47 |
| Msa0742180 | Msa1127140 | 0.804834 | 1.786124e-49 | -8.615850e-47 |
| Msa0742180 | Msa1135380 | 0.802513 | 5.414567e-49 | -8.615850e-47 |
| Msa0742180 | Msa1145020 | 0.848796 | 4.877050e-60 | -8.615850e-47 |
| Msa0742180 | Msa1166400 | 0.812098 | 5.030298e-51 | -8.615850e-47 |
| Msa0742180 | Msa1169990 | 0.819096 | 1.389593e-52 | -8.615850e-47 |
| Msa0742180 | Msa1177400 | 0.842444 | 2.575925e-58 | -8.615850e-47 |
| Msa0742180 | Msa1179280 | 0.810847 | 9.403646e-51 | -8.615850e-47 |
| Msa0742180 | Msa1179520 | 0.819296 | 1.251181e-52 | -8.615850e-47 |
| Msa0742180 | Msa1201110 | 0.827298 | 1.689821e-54 | -8.615850e-47 |
| Msa0742180 | Msa1201160 | 0.824518 | 7.728950e-54 | -8.615850e-47 |
| Msa0742180 | Msa1228190 | 0.842532 | 2.441158e-58 | -8.615850e-47 |
| Msa0742180 | Msa1233560 | 0.816071 | 6.679654e-52 | -8.615850e-47 |
| Msa0742180 | Msa1234280 | 0.805163 | 1.524386e-49 | -8.615850e-47 |
| Msa0742180 | Msa1271260 | 0.824296 | 8.715852e-54 | -8.615850e-47 |
| Msa0742180 | Msa1294290 | 0.818039 | 2.412997e-52 | -8.615850e-47 |
| Msa0742180 | Msa1305510 | 0.810399 | 1.175391e-50 | -8.615850e-47 |
| Msa0742180 | Msa1313970 | 0.819822 | 9.488805e-53 | -8.615850e-47 |
| Msa0742180 | Msa1345420 | 0.828224 | 1.012321e-54 | -8.615850e-47 |
| Msa0742180 | Msa1379970 | 0.818029 | 2.425386e-52 | -8.615850e-47 |
| Msa0742180 | Msa1420060 | 0.816577 | 5.147625e-52 | -8.615850e-47 |
| Msa0742180 | Msa1421550 | 0.813795 | 2.135536e-51 | -8.615850e-47 |
| Msa0742180 | Msa1424690 | 0.818801 | 1.621946e-52 | -8.615850e-47 |
| Msa0742180 | Msa1435480 | 0.844459 | 7.463875e-59 | -8.615850e-47 |
| Msa0742180 | Msa1458910 | 0.833341 | 5.639044e-56 | -8.615850e-47 |
| Msa0742180 | Msa1462530 | 0.811612 | 6.417689e-51 | -8.615850e-47 |
| Msa0124130 | Msa0742180 | 0.809378 | 1.949501e-50 | -8.615850e-47 |
| Msa0130570 | Msa0742180 | 0.824720 | 6.928666e-54 | -8.615850e-47 |
| Msa0149140 | Msa0742180 | 0.815429 | 9.288071e-52 | -8.615850e-47 |
| Msa0153420 | Msa0742180 | 0.803471 | 3.431543e-49 | -8.615850e-47 |
| Msa0156250 | Msa0742180 | 0.806143 | 9.490528e-50 | -8.615850e-47 |
| Msa0169920 | Msa0742180 | 0.812637 | 3.835750e-51 | -8.615850e-47 |
| Msa0176470 | Msa0742180 | 0.843999 | 9.918770e-59 | -8.615850e-47 |
| Msa0194380 | Msa0742180 | 0.835592 | 1.534424e-56 | -8.615850e-47 |
| Msa0197930 | Msa0742180 | 0.810177 | 1.312391e-50 | -8.615850e-47 |
| Msa0203030 | Msa0742180 | 0.815841 | 7.517888e-52 | -8.615850e-47 |
| Msa0206800 | Msa0742180 | 0.801955 | 7.053265e-49 | -8.615850e-47 |
| Msa0219190 | Msa0742180 | 0.803717 | 3.050999e-49 | -8.615850e-47 |
| Msa0221090 | Msa0742180 | 0.812754 | 3.615028e-51 | -8.615850e-47 |
| Msa0236110 | Msa0742180 | 0.814506 | 1.488228e-51 | -8.615850e-47 |
| Msa0370030 | Msa0742180 | 0.802393 | 5.730342e-49 | -8.615850e-47 |
| Msa0373960 | Msa0742180 | 0.864317 | 1.326718e-64 | -8.615850e-47 |
| Msa0382010 | Msa0742180 | 0.813161 | 2.944526e-51 | -8.615850e-47 |
| Msa0385390 | Msa0742180 | 0.807106 | 5.943747e-50 | -8.615850e-47 |
| Msa0406000 | Msa0742180 | 0.804681 | 1.922044e-49 | -8.615850e-47 |
| Msa0407890 | Msa0742180 | 0.817005 | 4.125904e-52 | -8.615850e-47 |
| Msa0415320 | Msa0742180 | 0.808492 | 3.016286e-50 | -8.615850e-47 |
| Msa0423100 | Msa0742180 | 0.837019 | 6.652019e-57 | -8.615850e-47 |
| Msa0424330 | Msa0742180 | 0.805625 | 1.219422e-49 | -8.615850e-47 |
| Msa0436500 | Msa0742180 | 0.815603 | 8.494191e-52 | -8.615850e-47 |
| Msa0441590 | Msa0742180 | 0.821811 | 3.310744e-53 | -8.615850e-47 |
| Msa0451400 | Msa0742180 | 0.814718 | 1.335998e-51 | -8.615850e-47 |
| Msa0452920 | Msa0742180 | 0.800578 | 1.349335e-48 | -8.615850e-47 |
| Msa0469260 | Msa0742180 | 0.826394 | 2.779260e-54 | -8.615850e-47 |
| Msa0251240 | Msa0742180 | 0.804702 | 1.902959e-49 | -8.615850e-47 |
| Msa0262560 | Msa0742180 | 0.806807 | 6.875547e-50 | -8.615850e-47 |
| Msa0277290 | Msa0742180 | 0.815431 | 9.275383e-52 | -8.615850e-47 |
| Msa0298240 | Msa0742180 | 0.823945 | 1.053590e-53 | -8.615850e-47 |
| Msa0314630 | Msa0742180 | 0.813213 | 2.868779e-51 | -8.615850e-47 |
| Msa0322830 | Msa0742180 | 0.825940 | 3.564512e-54 | -8.615850e-47 |
| Msa0322840 | Msa0742180 | 0.832200 | 1.082715e-55 | -8.615850e-47 |
| Msa0322860 | Msa0742180 | 0.840845 | 6.804685e-58 | -8.615850e-47 |
| Msa0329620 | Msa0742180 | 0.801752 | 7.762482e-49 | -8.615850e-47 |
| Msa0331530 | Msa0742180 | 0.801531 | 8.618732e-49 | -8.615850e-47 |
| Msa0331540 | Msa0742180 | 0.806933 | 6.466242e-50 | -8.615850e-47 |
| Msa0351770 | Msa0742180 | 0.832143 | 1.118402e-55 | -8.615850e-47 |
| Msa0359250 | Msa0742180 | 0.817282 | 3.574841e-52 | -8.615850e-47 |
| Msa0492190 | Msa0742180 | 0.808320 | 3.281732e-50 | -8.615850e-47 |
| Msa0514980 | Msa0742180 | 0.815626 | 8.393861e-52 | -8.615850e-47 |
| Msa0520510 | Msa0742180 | 0.825610 | 4.267789e-54 | -8.615850e-47 |
| Msa0534930 | Msa0742180 | 0.817044 | 4.044697e-52 | -8.615850e-47 |
| Msa0535040 | Msa0742180 | 0.819254 | 1.279123e-52 | -8.615850e-47 |
| Msa0575740 | Msa0742180 | 0.832988 | 6.901160e-56 | -8.615850e-47 |
| Msa0591790 | Msa0742180 | 0.812075 | 5.089170e-51 | -8.615850e-47 |
| Msa0591800 | Msa0742180 | 0.826594 | 2.490054e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0742180 | MtrunA17_Chr5g0443691 | 94.495 | 109 | 6 | 0 | 6 | 114 | 22 | 130 | 5.86e-70 | 218 |
| Msa0742180 | MtrunA17_Chr5g0443691 | 100.000 | 83 | 0 | 0 | 109 | 191 | 319 | 401 | 1.41e-52 | 173 |
| Msa0742180 | MtrunA17_Chr3g0098401 | 59.804 | 102 | 31 | 2 | 14 | 106 | 1 | 101 | 1.02e-32 | 115 |
| Msa0742180 | MtrunA17_Chr3g0098391 | 58.750 | 80 | 32 | 1 | 109 | 188 | 118 | 196 | 4.06e-25 | 98.2 |
| Msa0742180 | MtrunA17_Chr2g0286281 | 70.000 | 60 | 18 | 0 | 109 | 168 | 308 | 367 | 3.86e-22 | 92.8 |
| Msa0742180 | MtrunA17_Chr7g0263521 | 56.000 | 75 | 26 | 1 | 109 | 183 | 292 | 359 | 2.17e-21 | 90.1 |
| Msa0742180 | MtrunA17_Chr1g0181821 | 56.522 | 69 | 30 | 0 | 109 | 177 | 293 | 361 | 9.81e-21 | 88.2 |
| Msa0742180 | MtrunA17_Chr2g0327471 | 61.667 | 60 | 23 | 0 | 109 | 168 | 310 | 369 | 1.08e-20 | 88.2 |
| Msa0742180 | MtrunA17_Chr1g0213991 | 63.333 | 60 | 22 | 0 | 109 | 168 | 316 | 375 | 2.23e-20 | 87.8 |
| Msa0742180 | MtrunA17_Chr2g0327531 | 60.000 | 60 | 24 | 0 | 109 | 168 | 262 | 321 | 3.66e-20 | 86.7 |
| Msa0742180 | MtrunA17_Chr2g0327511 | 60.000 | 60 | 24 | 0 | 109 | 168 | 327 | 386 | 1.65e-19 | 85.1 |
| Msa0742180 | MtrunA17_Chr2g0288121 | 59.016 | 61 | 25 | 0 | 109 | 169 | 261 | 321 | 1.83e-18 | 81.6 |
| Msa0742180 | MtrunA17_Chr7g0237401 | 35.398 | 113 | 66 | 1 | 57 | 169 | 267 | 372 | 5.40e-17 | 77.8 |
| Msa0742180 | MtrunA17_Chr7g0237401 | 33.333 | 120 | 55 | 3 | 14 | 109 | 1 | 119 | 2.17e-11 | 61.6 |
| Msa0742180 | MtrunA17_Chr1g0189791 | 53.846 | 65 | 30 | 0 | 109 | 173 | 290 | 354 | 5.70e-17 | 78.2 |
| Msa0742180 | MtrunA17_Chr3g0143961 | 56.897 | 58 | 25 | 0 | 111 | 168 | 288 | 345 | 1.55e-16 | 76.3 |
| Msa0742180 | MtrunA17_Chr4g0074651 | 44.444 | 72 | 38 | 1 | 113 | 184 | 346 | 415 | 1.49e-14 | 70.9 |
| Msa0742180 | MtrunA17_Chr4g0066761 | 58.491 | 53 | 22 | 0 | 112 | 164 | 293 | 345 | 1.27e-13 | 68.2 |
| Msa0742180 | MtrunA17_Chr1g0153851 | 46.552 | 58 | 31 | 0 | 111 | 168 | 270 | 327 | 1.36e-13 | 67.8 |
| Msa0742180 | MtrunA17_Chr7g0275131 | 51.667 | 60 | 29 | 0 | 109 | 168 | 292 | 351 | 2.93e-13 | 67.4 |
| Msa0742180 | MtrunA17_Chr7g0251771 | 45.455 | 66 | 36 | 0 | 103 | 168 | 263 | 328 | 1.98e-12 | 64.7 |
| Msa0742180 | MtrunA17_Chr2g0327541 | 42.857 | 77 | 40 | 3 | 109 | 184 | 331 | 404 | 2.78e-12 | 64.3 |
| Msa0742180 | MtrunA17_Chr1g0191631 | 49.206 | 63 | 32 | 0 | 109 | 171 | 369 | 431 | 2.79e-12 | 64.3 |
| Msa0742180 | MtrunA17_Chr8g0380441 | 36.667 | 90 | 56 | 1 | 88 | 176 | 274 | 363 | 3.03e-12 | 64.3 |
| Msa0742180 | MtrunA17_Chr2g0320111 | 44.444 | 63 | 35 | 0 | 109 | 171 | 315 | 377 | 1.51e-11 | 62.4 |
| Msa0742180 | MtrunA17_Chr4g0076271 | 47.458 | 59 | 31 | 0 | 110 | 168 | 191 | 249 | 3.89e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0742180 | AT5G18610.1 | 68.333 | 60 | 19 | 0 | 109 | 168 | 302 | 361 | 3.49e-21 | 90.5 |
| Msa0742180 | AT5G18610.2 | 68.333 | 60 | 19 | 0 | 109 | 168 | 302 | 361 | 3.49e-21 | 90.5 |
| Msa0742180 | AT5G18610.3 | 68.333 | 60 | 19 | 0 | 109 | 168 | 302 | 361 | 3.49e-21 | 90.5 |
| Msa0742180 | AT3G20530.1 | 63.934 | 61 | 22 | 0 | 109 | 169 | 302 | 362 | 4.76e-21 | 89.4 |
| Msa0742180 | AT3G20530.1 | 53.425 | 73 | 33 | 1 | 32 | 104 | 32 | 103 | 1.89e-19 | 85.1 |
| Msa0742180 | AT1G61860.1 | 57.895 | 76 | 31 | 1 | 109 | 184 | 304 | 378 | 8.19e-21 | 89.0 |
| Msa0742180 | AT5G02800.1 | 63.333 | 60 | 22 | 0 | 109 | 168 | 292 | 351 | 3.12e-20 | 87.0 |
| Msa0742180 | AT3G20530.2 | 53.425 | 73 | 33 | 1 | 32 | 104 | 32 | 103 | 2.29e-19 | 84.0 |
| Msa0742180 | AT2G28590.1 | 50.000 | 84 | 35 | 2 | 109 | 187 | 317 | 398 | 7.80e-19 | 83.6 |
| Msa0742180 | AT1G07870.1 | 58.333 | 60 | 25 | 0 | 109 | 168 | 322 | 381 | 2.67e-18 | 82.0 |
| Msa0742180 | AT1G07870.2 | 58.333 | 60 | 25 | 0 | 109 | 168 | 322 | 381 | 2.90e-18 | 82.4 |
| Msa0742180 | AT5G13160.1 | 56.667 | 60 | 26 | 0 | 109 | 168 | 305 | 364 | 7.68e-17 | 78.2 |
| Msa0742180 | AT5G13160.1 | 37.209 | 86 | 47 | 2 | 23 | 104 | 25 | 107 | 1.01e-11 | 63.2 |
| Msa0742180 | AT3G24790.2 | 50.847 | 59 | 29 | 0 | 109 | 167 | 284 | 342 | 6.24e-15 | 72.4 |
| Msa0742180 | AT3G24790.1 | 50.847 | 59 | 29 | 0 | 109 | 167 | 266 | 324 | 7.00e-15 | 72.0 |
| Msa0742180 | AT3G02810.1 | 49.180 | 61 | 31 | 0 | 109 | 169 | 285 | 345 | 7.52e-15 | 72.4 |
| Msa0742180 | AT5G16500.1 | 52.459 | 61 | 29 | 0 | 109 | 169 | 294 | 354 | 1.34e-14 | 71.6 |
| Msa0742180 | AT1G20650.1 | 56.897 | 58 | 25 | 0 | 111 | 168 | 298 | 355 | 1.81e-14 | 70.9 |
| Msa0742180 | AT4G13190.2 | 48.333 | 60 | 31 | 0 | 109 | 168 | 143 | 202 | 2.54e-13 | 66.6 |
| Msa0742180 | AT4G13190.3 | 48.333 | 60 | 31 | 0 | 109 | 168 | 143 | 202 | 2.54e-13 | 66.6 |
| Msa0742180 | AT4G13190.1 | 48.333 | 60 | 31 | 0 | 109 | 168 | 290 | 349 | 2.72e-13 | 67.8 |
| Msa0742180 | AT4G13190.5 | 48.333 | 60 | 31 | 0 | 109 | 168 | 201 | 260 | 4.76e-13 | 66.6 |
| Msa0742180 | AT3G07070.1 | 40.698 | 86 | 42 | 2 | 109 | 186 | 298 | 382 | 1.10e-12 | 65.9 |
| Msa0742180 | AT1G76370.1 | 50.000 | 60 | 30 | 0 | 109 | 168 | 293 | 352 | 1.06e-11 | 63.2 |
Find 50 sgRNAs with CRISPR-Local
Find 177 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAATTGATCCTATGAATTT+TGG | 0.129006 | 5_1:+61998659 | None:intergenic |
| TTTGGTCAGATCAAATATTT+AGG | 0.156244 | 5_1:-61998502 | Msa0742180:CDS |
| CATAACATTTGTTCTAAATC+TGG | 0.300095 | 5_1:-61998395 | Msa0742180:intron |
| ATGGTTGATCCATTGCTAAA+AGG | 0.324510 | 5_1:-61996336 | Msa0742180:CDS |
| CATTAAAAGCATAAATAATA+AGG | 0.330286 | 5_1:-61997981 | Msa0742180:intron |
| ATGATTGGTGAAGGAGGCTT+TGG | 0.350796 | 5_1:-61998022 | Msa0742180:CDS |
| CACATTGAAGAAAAGCATTA+AGG | 0.356021 | 5_1:-61998423 | Msa0742180:CDS |
| TTTCAAATCAATGTAACCTT+TGG | 0.358757 | 5_1:+61998562 | None:intergenic |
| GAGGAAGAAAATACCAGAAA+TGG | 0.371010 | 5_1:-61998121 | Msa0742180:CDS |
| TTTCACATCAACAATATGAT+TGG | 0.385541 | 5_1:-61998037 | Msa0742180:CDS |
| GTTCTTCAAAGGCCATAGTT+AGG | 0.392855 | 5_1:+61998719 | None:intergenic |
| TCTTCAAAATGACACACTAT+TGG | 0.393606 | 5_1:+61996027 | None:intergenic |
| TCTTTGAAGCCAAAATTCAT+AGG | 0.402958 | 5_1:-61998668 | Msa0742180:five_prime_UTR |
| TGGTTGATCCATTGCTAAAA+GGG | 0.405784 | 5_1:-61996335 | Msa0742180:CDS |
| TTGGTCAGATCAAATATTTA+GGG | 0.417148 | 5_1:-61998501 | Msa0742180:CDS |
| AAGGTTACATTGATTTGAAA+AGG | 0.417280 | 5_1:-61998559 | Msa0742180:five_prime_UTR |
| AAATGAATTTCATAGATTAG+AGG | 0.428405 | 5_1:-61996122 | Msa0742180:three_prime_UTR |
| GCTAATGCTCGACCTTTGAT+TGG | 0.440229 | 5_1:-61996249 | Msa0742180:CDS |
| GTAACCTTTGGACATTCATA+AGG | 0.441867 | 5_1:+61998574 | None:intergenic |
| AATGTTTCATTGTTCTTCAA+AGG | 0.462690 | 5_1:+61998708 | None:intergenic |
| AATTGCAGCAATGTGTCTAT+TGG | 0.471623 | 5_1:-61996277 | Msa0742180:CDS |
| TGATTGGTGAAGGAGGCTTT+GGG | 0.474756 | 5_1:-61998021 | Msa0742180:CDS |
| AGCAATGAGGCATGTACAAG+TGG | 0.485378 | 5_1:-61996199 | Msa0742180:CDS |
| ATGGTAAGAAAGTATCTTAG+AGG | 0.495881 | 5_1:+61998084 | None:intergenic |
| TTGCTGCAATTGCTAGTGCT+TGG | 0.502816 | 5_1:+61996289 | None:intergenic |
| GCTTGGAATAGACCCCTCAT+TGG | 0.504156 | 5_1:+61996306 | None:intergenic |
| AAAGAAACTTCTATTGAGAA+AGG | 0.507151 | 5_1:-61996159 | Msa0742180:CDS |
| GAAAATACCAGAAATGGAAA+AGG | 0.508454 | 5_1:-61998115 | Msa0742180:CDS |
| CTTGGAATAGACCCCTCATT+GGG | 0.515018 | 5_1:+61996307 | None:intergenic |
| TAGAGGGATAGTGAATGAAA+AGG | 0.537028 | 5_1:-61996096 | Msa0742180:three_prime_UTR |
| CAAAAGAAAATATACATCAA+TGG | 0.539816 | 5_1:-61996355 | Msa0742180:CDS |
| ATATTGTAGATGGTGGCAAA+CGG | 0.554022 | 5_1:-61998156 | Msa0742180:intron |
| ATCAACAATATGATTGGTGA+AGG | 0.567519 | 5_1:-61998031 | Msa0742180:CDS |
| TAGTTGCAACGCATAGCTCA+TGG | 0.569513 | 5_1:+61998065 | None:intergenic |
| AACAATATGATTGGTGAAGG+AGG | 0.575519 | 5_1:-61998028 | Msa0742180:CDS |
| TCATAGATTAGAGGTCATAG+AGG | 0.583942 | 5_1:-61996113 | Msa0742180:three_prime_UTR |
| GCTTTGGGAGAGTATACAAA+GGG | 0.587572 | 5_1:-61998006 | Msa0742180:CDS |
| TAAAAGGGAACTACCCAATG+AGG | 0.597723 | 5_1:-61996320 | Msa0742180:CDS |
| AAAAGGGAACTACCCAATGA+GGG | 0.597816 | 5_1:-61996319 | Msa0742180:CDS |
| TGCAGCAATGTGTCTATTGG+AGG | 0.599947 | 5_1:-61996274 | Msa0742180:CDS |
| CATAGATTAGAGGTCATAGA+GGG | 0.603289 | 5_1:-61996112 | Msa0742180:three_prime_UTR |
| ACAATGAAACATTGCCAATG+TGG | 0.618018 | 5_1:-61998698 | Msa0742180:five_prime_UTR |
| GGTCAGATCAAATATTTAGG+GGG | 0.621985 | 5_1:-61998499 | Msa0742180:CDS |
| TGGTCAGATCAAATATTTAG+GGG | 0.631182 | 5_1:-61998500 | Msa0742180:CDS |
| AGCTCCTTATGAATGTCCAA+AGG | 0.634892 | 5_1:-61998578 | Msa0742180:five_prime_UTR |
| GTGACTACATCACCAATCAA+AGG | 0.646059 | 5_1:+61996237 | None:intergenic |
| GGCTTTGGGAGAGTATACAA+AGG | 0.654988 | 5_1:-61998007 | Msa0742180:CDS |
| GCAATGAGGCATGTACAAGT+GGG | 0.667750 | 5_1:-61996198 | Msa0742180:CDS |
| AAAGGGAACTACCCAATGAG+GGG | 0.687981 | 5_1:-61996318 | Msa0742180:CDS |
| CAAACGGAAGTACATAGCAG+AGG | 0.702175 | 5_1:-61998140 | Msa0742180:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATATAAAGTTTTACAATTA+AGG | + | chr5_1:61996565-61996584 | None:intergenic | 10.0% |
| !!! | TATTTCAATTTTTTATCATT+TGG | + | chr5_1:61998163-61998182 | None:intergenic | 10.0% |
| !!! | ATATGTTTTAATATAAGAAT+AGG | + | chr5_1:61998224-61998243 | None:intergenic | 10.0% |
| !!! | ATCAATTTTGTTTTTATGAT+GGG | - | chr5_1:61996091-61996110 | Msa0742180:three_prime_UTR | 15.0% |
| !!! | CATTAAAAGCATAAATAATA+AGG | - | chr5_1:61996755-61996774 | Msa0742180:intron | 15.0% |
| !! | AAAATTGTATAGTACAAATA+TGG | - | chr5_1:61997325-61997344 | Msa0742180:intron | 15.0% |
| !! | TATAAATTTCATGTATGATT+TGG | + | chr5_1:61997427-61997446 | None:intergenic | 15.0% |
| !! | CAAAATAAATTGAAAAATGA+AGG | - | chr5_1:61997466-61997485 | Msa0742180:intron | 15.0% |
| !!! | TCATAACATTTTTTTTATTC+AGG | - | chr5_1:61998339-61998358 | Msa0742180:intron | 15.0% |
| !!! | ATAATTTCTTTTCCTAACTA+TGG | - | chr5_1:61996005-61996024 | Msa0742180:three_prime_UTR | 20.0% |
| !!! | AAAATTGATCCTATGAATTT+TGG | + | chr5_1:61996080-61996099 | None:intergenic | 20.0% |
| !!! | GATCAATTTTGTTTTTATGA+TGG | - | chr5_1:61996090-61996109 | Msa0742180:three_prime_UTR | 20.0% |
| !!! | ACTTTGTAATTTTGTAAATG+TGG | - | chr5_1:61996210-61996229 | Msa0742180:CDS | 20.0% |
| !!! | TAATTTTGTAAATGTGGTTT+TGG | - | chr5_1:61996216-61996235 | Msa0742180:CDS | 20.0% |
| !! | TTTCACATTAAATATTGCAA+AGG | - | chr5_1:61996410-61996429 | Msa0742180:intron | 20.0% |
| !! | TTCACATTAAATATTGCAAA+GGG | - | chr5_1:61996411-61996430 | Msa0742180:intron | 20.0% |
| !!! | TATTGATTTTCATGTTATAG+AGG | - | chr5_1:61996434-61996453 | Msa0742180:intron | 20.0% |
| !! | GTAAAACTTTATATTGTAGA+TGG | - | chr5_1:61996570-61996589 | Msa0742180:intron | 20.0% |
| !! | TGCTAACAAATTAAGTTATT+CGG | - | chr5_1:61996815-61996834 | Msa0742180:intron | 20.0% |
| !! | TTAAAAATTGAACATCAAAC+CGG | - | chr5_1:61996853-61996872 | Msa0742180:intron | 20.0% |
| !!! | GTTTTAAAAATTGAACAAGA+CGG | + | chr5_1:61996998-61997017 | None:intergenic | 20.0% |
| !!! | TTGGATGATTTAAGATTTTT+AGG | + | chr5_1:61997295-61997314 | None:intergenic | 20.0% |
| !!! | TACAATTTTGATACTAGAAT+TGG | + | chr5_1:61997314-61997333 | None:intergenic | 20.0% |
| !!! | ATAAAATGTGCTTTATTTTG+TGG | + | chr5_1:61997351-61997370 | None:intergenic | 20.0% |
| !!! | TTAGCAAGTTTTATTAGAAA+GGG | + | chr5_1:61997542-61997561 | None:intergenic | 20.0% |
| !!! | TTTAGCAAGTTTTATTAGAA+AGG | + | chr5_1:61997543-61997562 | None:intergenic | 20.0% |
| !!! | GAAAATCATTTTTCTTTAGT+TGG | + | chr5_1:61997576-61997595 | None:intergenic | 20.0% |
| !! | ACACAAAAATTGTGTATTAT+TGG | - | chr5_1:61998252-61998271 | Msa0742180:intron | 20.0% |
| !!! | ATGTTATGAATGTCAATTTT+AGG | + | chr5_1:61998328-61998347 | None:intergenic | 20.0% |
| !! | CAAAAGAAAATATACATCAA+TGG | - | chr5_1:61998381-61998400 | Msa0742180:intron | 20.0% |
| !! | AAATGAATTTCATAGATTAG+AGG | - | chr5_1:61998614-61998633 | Msa0742180:five_prime_UTR | 20.0% |
| ! | AATGTTTCATTGTTCTTCAA+AGG | + | chr5_1:61996031-61996050 | None:intergenic | 25.0% |
| !!! | TTTGTTTTTATGATGGGTAA+AGG | - | chr5_1:61996097-61996116 | Msa0742180:three_prime_UTR | 25.0% |
| ! | TTTCAAATCAATGTAACCTT+TGG | + | chr5_1:61996177-61996196 | None:intergenic | 25.0% |
| !!! | AAGGTTACATTGATTTGAAA+AGG | - | chr5_1:61996177-61996196 | Msa0742180:CDS | 25.0% |
| ! | TTTGGTCAGATCAAATATTT+AGG | - | chr5_1:61996234-61996253 | Msa0742180:CDS | 25.0% |
| ! | TTGGTCAGATCAAATATTTA+GGG | - | chr5_1:61996235-61996254 | Msa0742180:CDS | 25.0% |
| !! | CATAACATTTGTTCTAAATC+TGG | - | chr5_1:61996341-61996360 | Msa0742180:CDS | 25.0% |
| ! | AAACTTTATATTGTAGATGG+TGG | - | chr5_1:61996573-61996592 | Msa0742180:intron | 25.0% |
| !! | AATATTTCCTTTTCCATTTC+TGG | + | chr5_1:61996631-61996650 | None:intergenic | 25.0% |
| ! | TTTCACATCAACAATATGAT+TGG | - | chr5_1:61996699-61996718 | Msa0742180:intron | 25.0% |
| ! | CATATTTCAACAGTCTAAAA+CGG | - | chr5_1:61996890-61996909 | Msa0742180:intron | 25.0% |
| ! | TATTTATGACCTTTAGATCA+CGG | + | chr5_1:61996932-61996951 | None:intergenic | 25.0% |
| ! | AAATAACCAAACCATAGTAA+AGG | - | chr5_1:61996947-61996966 | Msa0742180:intron | 25.0% |
| !!! | GATTTTGGTATATGAGTATA+TGG | - | chr5_1:61997204-61997223 | Msa0742180:intron | 25.0% |
| ! | TTAAATTTCTCATAGCTGTT+TGG | - | chr5_1:61997377-61997396 | Msa0742180:intron | 25.0% |
| !! | ATTAGAAAGGGAACATTTTA+TGG | + | chr5_1:61997530-61997549 | None:intergenic | 25.0% |
| !! | TGAGAAAATGTTAAGCTTTT+AGG | + | chr5_1:61998020-61998039 | None:intergenic | 25.0% |
| !! | TAAAAGCTTAACATTTTCTC+AGG | - | chr5_1:61998019-61998038 | Msa0742180:CDS | 25.0% |
| !!! | AATGTCAATTTTAGGTTCAT+TGG | + | chr5_1:61998320-61998339 | None:intergenic | 25.0% |
| !!! | TTTCTTTTGTTTTTGAGTAG+TGG | + | chr5_1:61998370-61998389 | None:intergenic | 25.0% |
| ! | AAAGAAACTTCTATTGAGAA+AGG | - | chr5_1:61998577-61998596 | Msa0742180:five_prime_UTR | 25.0% |
| ! | ATCATAGAAAAATATGGTGA+TGG | + | chr5_1:61998741-61998760 | None:intergenic | 25.0% |
| ! | TCAAAGAATTTTTGCCACAT+TGG | + | chr5_1:61996055-61996074 | None:intergenic | 30.0% |
| !! | TCTTTGAAGCCAAAATTCAT+AGG | - | chr5_1:61996068-61996087 | Msa0742180:three_prime_UTR | 30.0% |
| TGGTCAGATCAAATATTTAG+GGG | - | chr5_1:61996236-61996255 | Msa0742180:CDS | 30.0% | |
| !! | CACATTGAAGAAAAGCATTA+AGG | - | chr5_1:61996313-61996332 | Msa0742180:CDS | 30.0% |
| TGAGGAAGATTAACATTGAA+GGG | + | chr5_1:61996378-61996397 | None:intergenic | 30.0% | |
| ATGAGGAAGATTAACATTGA+AGG | + | chr5_1:61996379-61996398 | None:intergenic | 30.0% | |
| GTGAAATAATTGAGACAATG+AGG | + | chr5_1:61996396-61996415 | None:intergenic | 30.0% | |
| ACAACAATTGAGGTAAAAAG+TGG | + | chr5_1:61996537-61996556 | None:intergenic | 30.0% | |
| GAAAATACCAGAAATGGAAA+AGG | - | chr5_1:61996621-61996640 | Msa0742180:intron | 30.0% | |
| !! | ATGGTAAGAAAGTATCTTAG+AGG | + | chr5_1:61996655-61996674 | None:intergenic | 30.0% |
| ATCAACAATATGATTGGTGA+AGG | - | chr5_1:61996705-61996724 | Msa0742180:intron | 30.0% | |
| GGTATAATATTACTTGTGCT+AGG | - | chr5_1:61996776-61996795 | Msa0742180:intron | 30.0% | |
| AATTGACCTTTACTATGGTT+TGG | + | chr5_1:61996956-61996975 | None:intergenic | 30.0% | |
| TGCTGTAAAGAAACTTAACA+AGG | - | chr5_1:61997072-61997091 | Msa0742180:intron | 30.0% | |
| GTAAAGAAACTTAACAAGGA+TGG | - | chr5_1:61997076-61997095 | Msa0742180:intron | 30.0% | |
| ! | TGTGCATTTTCTTACCAAAA+AGG | + | chr5_1:61997252-61997271 | None:intergenic | 30.0% |
| CAATCTTGCATGTAATTACT+GGG | + | chr5_1:61997505-61997524 | None:intergenic | 30.0% | |
| ACTAGAATGAAAATTGCAGA+AGG | - | chr5_1:61997633-61997652 | Msa0742180:intron | 30.0% | |
| ! | AATCCAAAACTCTCTGATTT+TGG | - | chr5_1:61997753-61997772 | Msa0742180:intron | 30.0% |
| !! | TGTTTCTAGAGATGATTACT+GGG | - | chr5_1:61997913-61997932 | Msa0742180:intron | 30.0% |
| ATCATCTGAAGAAGAAAACT+TGG | - | chr5_1:61997959-61997978 | Msa0742180:intron | 30.0% | |
| AAGAAGAAAACTTGGTCATT+TGG | - | chr5_1:61997967-61997986 | Msa0742180:intron | 30.0% | |
| AGAAGAAAACTTGGTCATTT+GGG | - | chr5_1:61997968-61997987 | Msa0742180:intron | 30.0% | |
| ! | GCTTTTAGGCACATAAATAA+AGG | + | chr5_1:61998006-61998025 | None:intergenic | 30.0% |
| AAGATAAATGCTAACAAGTG+TGG | - | chr5_1:61998060-61998079 | Msa0742180:CDS | 30.0% | |
| AGATAAATGCTAACAAGTGT+GGG | - | chr5_1:61998061-61998080 | Msa0742180:CDS | 30.0% | |
| TTAGTGCATGTTTGAATTTG+TGG | - | chr5_1:61998090-61998109 | Msa0742180:CDS | 30.0% | |
| !! | TTTATCATTTGGTGCATGAT+TGG | + | chr5_1:61998152-61998171 | None:intergenic | 30.0% |
| TCTTCAAAATGACACACTAT+TGG | + | chr5_1:61998712-61998731 | None:intergenic | 30.0% | |
| ACAATGAAACATTGCCAATG+TGG | - | chr5_1:61996038-61996057 | Msa0742180:three_prime_UTR | 35.0% | |
| GTAACCTTTGGACATTCATA+AGG | + | chr5_1:61996165-61996184 | None:intergenic | 35.0% | |
| GGTCAGATCAAATATTTAGG+GGG | - | chr5_1:61996237-61996256 | Msa0742180:CDS | 35.0% | |
| ! | GCTTTTCTTCAATGTGTTCT+TGG | + | chr5_1:61996309-61996328 | None:intergenic | 35.0% |
| TAAGGAGACAACAACAATTG+AGG | + | chr5_1:61996547-61996566 | None:intergenic | 35.0% | |
| ! | ATATTGTAGATGGTGGCAAA+CGG | - | chr5_1:61996580-61996599 | Msa0742180:intron | 35.0% |
| GAGGAAGAAAATACCAGAAA+TGG | - | chr5_1:61996615-61996634 | Msa0742180:intron | 35.0% | |
| AACAATATGATTGGTGAAGG+AGG | - | chr5_1:61996708-61996727 | Msa0742180:intron | 35.0% | |
| ATATGATTCAGAGTTCTTGC+CGG | + | chr5_1:61996875-61996894 | None:intergenic | 35.0% | |
| ! | AACAGTCTAAAACGGTTGAA+TGG | - | chr5_1:61996898-61996917 | Msa0742180:intron | 35.0% |
| ! | ACAGTCTAAAACGGTTGAAT+GGG | - | chr5_1:61996899-61996918 | Msa0742180:intron | 35.0% |
| CCTTGAATTGACCTTTACTA+TGG | + | chr5_1:61996961-61996980 | None:intergenic | 35.0% | |
| CCATAGTAAAGGTCAATTCA+AGG | - | chr5_1:61996958-61996977 | Msa0742180:intron | 35.0% | |
| ATTGAACAAGACGGTTTAAC+CGG | + | chr5_1:61996989-61997008 | None:intergenic | 35.0% | |
| !! | GTGTTACTTATACTATACGC+AGG | - | chr5_1:61997045-61997064 | Msa0742180:intron | 35.0% |
| ! | CTTAACAAGGATGGATTTCA+AGG | - | chr5_1:61997085-61997104 | Msa0742180:intron | 35.0% |
| TCTAACCTTGTCAATTTGGT+AGG | - | chr5_1:61997157-61997176 | Msa0742180:intron | 35.0% | |
| CTAACCTTGTCAATTTGGTA+GGG | - | chr5_1:61997158-61997177 | Msa0742180:intron | 35.0% | |
| AATACCCTACCAAATTGACA+AGG | + | chr5_1:61997165-61997184 | None:intergenic | 35.0% | |
| ! | AGAAGGTGATCAAAGGATTT+TGG | - | chr5_1:61997189-61997208 | Msa0742180:intron | 35.0% |
| GTATATGAGTATATGGCGAA+TGG | - | chr5_1:61997211-61997230 | Msa0742180:intron | 35.0% | |
| ! | TCGTTAGAAGATCACCTTTT+TGG | - | chr5_1:61997235-61997254 | Msa0742180:intron | 35.0% |
| TGGTTGTCACACAAATGTAA+AGG | + | chr5_1:61997407-61997426 | None:intergenic | 35.0% | |
| GCAATCTTGCATGTAATTAC+TGG | + | chr5_1:61997506-61997525 | None:intergenic | 35.0% | |
| ! | ATGATTTTCAGAGTTACCTC+CGG | - | chr5_1:61997587-61997606 | Msa0742180:intron | 35.0% |
| AATGAAAATTGCAGAAGGTG+CGG | - | chr5_1:61997638-61997657 | Msa0742180:intron | 35.0% | |
| TTGAAATCGCGATATATCAC+CGG | + | chr5_1:61997702-61997721 | None:intergenic | 35.0% | |
| ! | AGTCCAAAATCAGAGAGTTT+TGG | + | chr5_1:61997759-61997778 | None:intergenic | 35.0% |
| ATAAAACACATGTGTCCACT+AGG | - | chr5_1:61997802-61997821 | Msa0742180:intron | 35.0% | |
| TAAAACACATGTGTCCACTA+GGG | - | chr5_1:61997803-61997822 | Msa0742180:intron | 35.0% | |
| AGGTCAGATGTTTATAGCTT+TGG | - | chr5_1:61997885-61997904 | Msa0742180:intron | 35.0% | |
| !! | AGATGTTTATAGCTTTGGAG+TGG | - | chr5_1:61997890-61997909 | Msa0742180:intron | 35.0% |
| !! | GTGTTTCTAGAGATGATTAC+TGG | - | chr5_1:61997912-61997931 | Msa0742180:intron | 35.0% |
| ! | AAGCTTAACATTTTCTCAGG+AGG | - | chr5_1:61998022-61998041 | Msa0742180:CDS | 35.0% |
| ATGGTTGATCCATTGCTAAA+AGG | - | chr5_1:61998400-61998419 | Msa0742180:CDS | 35.0% | |
| TGGTTGATCCATTGCTAAAA+GGG | - | chr5_1:61998401-61998420 | Msa0742180:CDS | 35.0% | |
| AATTGCAGCAATGTGTCTAT+TGG | - | chr5_1:61998459-61998478 | Msa0742180:CDS | 35.0% | |
| !! | CTCTTGAAGTTTTAGCAATG+AGG | - | chr5_1:61998524-61998543 | Msa0742180:exon | 35.0% |
| TCATAGATTAGAGGTCATAG+AGG | - | chr5_1:61998623-61998642 | Msa0742180:five_prime_UTR | 35.0% | |
| CATAGATTAGAGGTCATAGA+GGG | - | chr5_1:61998624-61998643 | Msa0742180:five_prime_UTR | 35.0% | |
| TAGAGGGATAGTGAATGAAA+AGG | - | chr5_1:61998640-61998659 | Msa0742180:five_prime_UTR | 35.0% | |
| GTTCTTCAAAGGCCATAGTT+AGG | + | chr5_1:61996020-61996039 | None:intergenic | 40.0% | |
| AGCTCCTTATGAATGTCCAA+AGG | - | chr5_1:61996158-61996177 | Msa0742180:CDS | 40.0% | |
| CAGATCAAATATTTAGGGGG+TGG | - | chr5_1:61996240-61996259 | Msa0742180:CDS | 40.0% | |
| !! | GCTTTGGGAGAGTATACAAA+GGG | - | chr5_1:61996730-61996749 | Msa0742180:intron | 40.0% |
| ! | CAGTCTAAAACGGTTGAATG+GGG | - | chr5_1:61996900-61996919 | Msa0742180:intron | 40.0% |
| GGGATAAAACCGTGATCTAA+AGG | - | chr5_1:61996920-61996939 | Msa0742180:intron | 40.0% | |
| CCAAATTGACAAGGTTAGAG+TGG | + | chr5_1:61997156-61997175 | None:intergenic | 40.0% | |
| CCACTCTAACCTTGTCAATT+TGG | - | chr5_1:61997153-61997172 | Msa0742180:intron | 40.0% | |
| ATTGTGCAGAAGGTGATCAA+AGG | - | chr5_1:61997182-61997201 | Msa0742180:intron | 40.0% | |
| CTTGCATGTAATTACTGGGA+AGG | + | chr5_1:61997501-61997520 | None:intergenic | 40.0% | |
| ! | TGATTTTCAGAGTTACCTCC+GGG | - | chr5_1:61997588-61997607 | Msa0742180:intron | 40.0% |
| ATTCTAGTGTGCCAATCCAA+AGG | + | chr5_1:61997621-61997640 | None:intergenic | 40.0% | |
| ! | GATTTTGGACTTGCAAAGCT+TGG | - | chr5_1:61997768-61997787 | Msa0742180:intron | 40.0% |
| ! | ACATGTGTTTTATCGCCTGT+CGG | + | chr5_1:61997795-61997814 | None:intergenic | 40.0% |
| TGTAGTCAATTGACCTGTTG+AGG | + | chr5_1:61997865-61997884 | None:intergenic | 40.0% | |
| CAACAGGTCAATTGACTACA+AGG | - | chr5_1:61997865-61997884 | Msa0742180:intron | 40.0% | |
| TTGGTGCATGATTGGAATCA+CGG | + | chr5_1:61998144-61998163 | None:intergenic | 40.0% | |
| TAAAAGGGAACTACCCAATG+AGG | - | chr5_1:61998416-61998435 | Msa0742180:CDS | 40.0% | |
| AAAAGGGAACTACCCAATGA+GGG | - | chr5_1:61998417-61998436 | Msa0742180:CDS | 40.0% | |
| GTGACTACATCACCAATCAA+AGG | + | chr5_1:61998502-61998521 | None:intergenic | 40.0% | |
| ! | CAAACGGAAGTACATAGCAG+AGG | - | chr5_1:61996596-61996615 | Msa0742180:intron | 45.0% |
| TAGTTGCAACGCATAGCTCA+TGG | + | chr5_1:61996674-61996693 | None:intergenic | 45.0% | |
| ATGATTGGTGAAGGAGGCTT+TGG | - | chr5_1:61996714-61996733 | Msa0742180:intron | 45.0% | |
| TGATTGGTGAAGGAGGCTTT+GGG | - | chr5_1:61996715-61996734 | Msa0742180:intron | 45.0% | |
| !! | GGCTTTGGGAGAGTATACAA+AGG | - | chr5_1:61996729-61996748 | Msa0742180:intron | 45.0% |
| AGGTCAATTCAAGGTCCAAC+CGG | - | chr5_1:61996967-61996986 | Msa0742180:intron | 45.0% | |
| AACAAGACGGTTTAACCGGT+TGG | + | chr5_1:61996985-61997004 | None:intergenic | 45.0% | |
| ! | AGGATGGATTTCAAGGAAGC+AGG | - | chr5_1:61997092-61997111 | Msa0742180:intron | 45.0% |
| ! | GGATGGATTTCAAGGAAGCA+GGG | - | chr5_1:61997093-61997112 | Msa0742180:intron | 45.0% |
| AAGCAGGGAATTTCTTGCAG+AGG | - | chr5_1:61997108-61997127 | Msa0742180:intron | 45.0% | |
| !! | TTGGTAGGGTATTGTGCAGA+AGG | - | chr5_1:61997172-61997191 | Msa0742180:intron | 45.0% |
| ! | CAATCCAAAGGCTTTTTGCC+CGG | + | chr5_1:61997609-61997628 | None:intergenic | 45.0% |
| AAATCGCGATATATCACCGG+TGG | + | chr5_1:61997699-61997718 | None:intergenic | 45.0% | |
| ATAAGTTCCCATCACCCTAG+TGG | + | chr5_1:61997820-61997839 | None:intergenic | 45.0% | |
| !! | ACTAGGGTGATGGGAACTTA+TGG | - | chr5_1:61997819-61997838 | Msa0742180:intron | 45.0% |
| ! | GGGTAGTTCCCTTTTAGCAA+TGG | + | chr5_1:61998412-61998431 | None:intergenic | 45.0% |
| AAAGGGAACTACCCAATGAG+GGG | - | chr5_1:61998418-61998437 | Msa0742180:CDS | 45.0% | |
| CTTGGAATAGACCCCTCATT+GGG | + | chr5_1:61998432-61998451 | None:intergenic | 45.0% | |
| TTGCTGCAATTGCTAGTGCT+TGG | + | chr5_1:61998450-61998469 | None:intergenic | 45.0% | |
| TGCAGCAATGTGTCTATTGG+AGG | - | chr5_1:61998462-61998481 | Msa0742180:CDS | 45.0% | |
| GCTAATGCTCGACCTTTGAT+TGG | - | chr5_1:61998487-61998506 | Msa0742180:CDS | 45.0% | |
| AGCAATGAGGCATGTACAAG+TGG | - | chr5_1:61998537-61998556 | Msa0742180:five_prime_UTR | 45.0% | |
| GCAATGAGGCATGTACAAGT+GGG | - | chr5_1:61998538-61998557 | Msa0742180:five_prime_UTR | 45.0% | |
| CGGGCAAAAAGCCTTTGGAT+TGG | - | chr5_1:61997607-61997626 | Msa0742180:intron | 50.0% | |
| ACATGTGTCCACTAGGGTGA+TGG | - | chr5_1:61997809-61997828 | Msa0742180:intron | 50.0% | |
| CATGTGTCCACTAGGGTGAT+GGG | - | chr5_1:61997810-61997829 | Msa0742180:intron | 50.0% | |
| TGACCTGTTGAGGCATACTC+AGG | + | chr5_1:61997855-61997874 | None:intergenic | 50.0% | |
| GCTTGGAATAGACCCCTCAT+TGG | + | chr5_1:61998433-61998452 | None:intergenic | 50.0% | |
| ACCTCCGGGCAAAAAGCCTT+TGG | - | chr5_1:61997602-61997621 | Msa0742180:intron | 55.0% | |
| ! | TCCAAAGGCTTTTTGCCCGG+AGG | + | chr5_1:61997606-61997625 | None:intergenic | 55.0% |
| ! | ATTGCAGAAGGTGCGGCGAA+AGG | - | chr5_1:61997645-61997664 | Msa0742180:intron | 55.0% |
| ACACGCAGAAGCAAAGCCAC+CGG | - | chr5_1:61997680-61997699 | Msa0742180:intron | 55.0% | |
| CTTGCAAAGCTTGGTCCGAC+AGG | - | chr5_1:61997777-61997796 | Msa0742180:intron | 55.0% | |
| GCACCTGAGTATGCCTCAAC+AGG | - | chr5_1:61997849-61997868 | Msa0742180:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 61995998 | 61998760 | 61995998 | ID=Msa0742180;Name=Msa0742180 |
| chr5_1 | mRNA | 61995998 | 61998760 | 61995998 | ID=Msa0742180-mRNA-1;Parent=Msa0742180;Name=Msa0742180-mRNA-1;_AED=0.26;_eAED=0.26;_QI=229|0.5|1|1|1|1|3|148|191 |
| chr5_1 | exon | 61995998 | 61996397 | 61995998 | ID=Msa0742180-mRNA-1:exon:18200;Parent=Msa0742180-mRNA-1 |
| chr5_1 | exon | 61997982 | 61998169 | 61997982 | ID=Msa0742180-mRNA-1:exon:18199;Parent=Msa0742180-mRNA-1 |
| chr5_1 | exon | 61998396 | 61998760 | 61998396 | ID=Msa0742180-mRNA-1:exon:18198;Parent=Msa0742180-mRNA-1 |
| chr5_1 | five_prime_UTR | 61998532 | 61998760 | 61998532 | ID=Msa0742180-mRNA-1:five_prime_utr;Parent=Msa0742180-mRNA-1 |
| chr5_1 | CDS | 61998396 | 61998531 | 61998396 | ID=Msa0742180-mRNA-1:cds;Parent=Msa0742180-mRNA-1 |
| chr5_1 | CDS | 61997982 | 61998169 | 61997982 | ID=Msa0742180-mRNA-1:cds;Parent=Msa0742180-mRNA-1 |
| chr5_1 | CDS | 61996146 | 61996397 | 61996146 | ID=Msa0742180-mRNA-1:cds;Parent=Msa0742180-mRNA-1 |
| chr5_1 | three_prime_UTR | 61995998 | 61996145 | 61995998 | ID=Msa0742180-mRNA-1:three_prime_utr;Parent=Msa0742180-mRNA-1 |
| Gene Sequence |
| Protein sequence |
