Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0469260 | AES72186.1 | 92.623 | 122 | 8 | 1 | 1 | 122 | 1 | 121 | 5.53e-74 | 226 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0469260 | sp|Q9LFT5|EPFL1_ARATH | 47.573 | 103 | 44 | 3 | 26 | 122 | 24 | 122 | 2.12e-24 | 93.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0469260 | G7J3Q1 | 92.623 | 122 | 8 | 1 | 1 | 122 | 1 | 121 | 2.64e-74 | 226 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002930 | Msa0469260 | 0.806640 | 7.455479e-50 | -8.615850e-47 |
| Msa0015710 | Msa0469260 | 0.820571 | 6.392394e-53 | -8.615850e-47 |
| Msa0029910 | Msa0469260 | 0.803587 | 3.246214e-49 | -8.615850e-47 |
| Msa0036430 | Msa0469260 | 0.810426 | 1.159721e-50 | -8.615850e-47 |
| Msa0062440 | Msa0469260 | 0.846424 | 2.191477e-59 | -8.615850e-47 |
| Msa0084500 | Msa0469260 | 0.821065 | 4.922774e-53 | -8.615850e-47 |
| Msa0104500 | Msa0469260 | 0.827694 | 1.357934e-54 | -8.615850e-47 |
| Msa0106790 | Msa0469260 | 0.800149 | 1.650458e-48 | -8.615850e-47 |
| Msa0109880 | Msa0469260 | 0.805720 | 1.164938e-49 | -8.615850e-47 |
| Msa0124130 | Msa0469260 | 0.811204 | 7.868060e-51 | -8.615850e-47 |
| Msa0130570 | Msa0469260 | 0.823762 | 1.163154e-53 | -8.615850e-47 |
| Msa0149140 | Msa0469260 | 0.805239 | 1.469176e-49 | -8.615850e-47 |
| Msa0152500 | Msa0469260 | 0.807260 | 5.513035e-50 | -8.615850e-47 |
| Msa0153420 | Msa0469260 | 0.802608 | 5.174739e-49 | -8.615850e-47 |
| Msa0156250 | Msa0469260 | 0.808781 | 2.616539e-50 | -8.615850e-47 |
| Msa0176470 | Msa0469260 | 0.848447 | 6.094605e-60 | -8.615850e-47 |
| Msa0194380 | Msa0469260 | 0.860319 | 2.244558e-63 | -8.615850e-47 |
| Msa0203030 | Msa0469260 | 0.829442 | 5.135809e-55 | -8.615850e-47 |
| Msa0206800 | Msa0469260 | 0.821507 | 3.891202e-53 | -8.615850e-47 |
| Msa0219190 | Msa0469260 | 0.818475 | 1.922868e-52 | -8.615850e-47 |
| Msa0236110 | Msa0469260 | 0.835059 | 2.091641e-56 | -8.615850e-47 |
| Msa0373960 | Msa0469260 | 0.904305 | 1.410725e-79 | -8.615850e-47 |
| Msa0406000 | Msa0469260 | 0.830167 | 3.421272e-55 | -8.615850e-47 |
| Msa0423100 | Msa0469260 | 0.909159 | 7.745931e-82 | -8.615850e-47 |
| Msa0424340 | Msa0469260 | 0.806445 | 8.197663e-50 | -8.615850e-47 |
| Msa0436500 | Msa0469260 | 0.802134 | 6.478625e-49 | -8.615850e-47 |
| Msa0441590 | Msa0469260 | 0.805400 | 1.359564e-49 | -8.615850e-47 |
| Msa0451400 | Msa0469260 | 0.854135 | 1.505589e-61 | -8.615850e-47 |
| Msa0469260 | Msa0476590 | 0.805595 | 1.237631e-49 | -8.615850e-47 |
| Msa0469260 | Msa0492190 | 0.813717 | 2.222116e-51 | -8.615850e-47 |
| Msa0469260 | Msa0514980 | 0.873827 | 1.087634e-67 | -8.615850e-47 |
| Msa0469260 | Msa0520510 | 0.851568 | 8.151808e-61 | -8.615850e-47 |
| Msa0469260 | Msa0534930 | 0.807154 | 5.806556e-50 | -8.615850e-47 |
| Msa0469260 | Msa0535040 | 0.827055 | 1.931999e-54 | -8.615850e-47 |
| Msa0469260 | Msa0575740 | 0.845218 | 4.657748e-59 | -8.615850e-47 |
| Msa0469260 | Msa0591790 | 0.830502 | 2.832405e-55 | -8.615850e-47 |
| Msa0469260 | Msa0591800 | 0.855099 | 7.918259e-62 | -8.615850e-47 |
| Msa0469260 | Msa0594090 | 0.810021 | 1.418074e-50 | -8.615850e-47 |
| Msa0469260 | Msa0667850 | 0.837166 | 6.102772e-57 | -8.615850e-47 |
| Msa0469260 | Msa0669840 | 0.853761 | 1.929424e-61 | -8.615850e-47 |
| Msa0469260 | Msa0725860 | 0.818219 | 2.197806e-52 | -8.615850e-47 |
| Msa0469260 | Msa0739480 | 0.822288 | 2.566574e-53 | -8.615850e-47 |
| Msa0469260 | Msa0742180 | 0.826394 | 2.779260e-54 | -8.615850e-47 |
| Msa0469260 | Msa0778930 | 0.802275 | 6.062044e-49 | -8.615850e-47 |
| Msa0469260 | Msa0786040 | 0.824337 | 8.525998e-54 | -8.615850e-47 |
| Msa0469260 | Msa0823400 | 0.851212 | 1.028274e-60 | -8.615850e-47 |
| Msa0469260 | Msa0828830 | 0.800443 | 1.437814e-48 | -8.615850e-47 |
| Msa0469260 | Msa0845940 | 0.817899 | 2.594930e-52 | -8.615850e-47 |
| Msa0469260 | Msa0860170 | 0.817849 | 2.663824e-52 | -8.615850e-47 |
| Msa0469260 | Msa0860280 | 0.806345 | 8.607179e-50 | -8.615850e-47 |
| Msa0469260 | Msa0862310 | 0.846230 | 2.475514e-59 | -8.615850e-47 |
| Msa0469260 | Msa0867350 | 0.803269 | 3.778513e-49 | -8.615850e-47 |
| Msa0469260 | Msa0885060 | 0.814712 | 1.339683e-51 | -8.615850e-47 |
| Msa0469260 | Msa0899950 | 0.818576 | 1.823588e-52 | -8.615850e-47 |
| Msa0469260 | Msa0929870 | 0.830683 | 2.557455e-55 | -8.615850e-47 |
| Msa0469260 | Msa0941820 | 0.806742 | 7.097316e-50 | -8.615850e-47 |
| Msa0469260 | Msa0961560 | 0.817079 | 3.972456e-52 | -8.615850e-47 |
| Msa0469260 | Msa0965310 | 0.836465 | 9.209965e-57 | -8.615850e-47 |
| Msa0469260 | Msa0979510 | 0.808665 | 2.769477e-50 | -8.615850e-47 |
| Msa0469260 | Msa0996270 | 0.831339 | 1.765844e-55 | -8.615850e-47 |
| Msa0469260 | Msa0999300 | 0.807150 | 5.817919e-50 | -8.615850e-47 |
| Msa0469260 | Msa0999340 | 0.855773 | 5.037778e-62 | -8.615850e-47 |
| Msa0469260 | Msa0999350 | 0.880691 | 4.454190e-70 | -8.615850e-47 |
| Msa0469260 | Msa0999360 | 0.843080 | 1.746076e-58 | -8.615850e-47 |
| Msa0469260 | Msa0999390 | 0.860022 | 2.759653e-63 | -8.615850e-47 |
| Msa0469260 | Msa0999400 | 0.871497 | 6.533047e-67 | -8.615850e-47 |
| Msa0469260 | Msa0999410 | 0.846269 | 2.415159e-59 | -8.615850e-47 |
| Msa0469260 | Msa0999700 | 0.817707 | 2.868003e-52 | -8.615850e-47 |
| Msa0469260 | Msa1006830 | 0.800262 | 1.564831e-48 | -8.615850e-47 |
| Msa0469260 | Msa1033560 | 0.802467 | 5.533436e-49 | -8.615850e-47 |
| Msa0469260 | Msa1034680 | 0.826969 | 2.025600e-54 | -8.615850e-47 |
| Msa0469260 | Msa1042670 | 0.810399 | 1.175153e-50 | -8.615850e-47 |
| Msa0469260 | Msa1047990 | 0.815125 | 1.085164e-51 | -8.615850e-47 |
| Msa0469260 | Msa1073340 | 0.831538 | 1.577216e-55 | -8.615850e-47 |
| Msa0469260 | Msa1079930 | 0.800357 | 1.497323e-48 | -8.615850e-47 |
| Msa0469260 | Msa1084520 | 0.813389 | 2.623628e-51 | -8.615850e-47 |
| Msa0469260 | Msa1092020 | 0.836084 | 1.151466e-56 | -8.615850e-47 |
| Msa0469260 | Msa1100140 | 0.806300 | 8.795212e-50 | -8.615850e-47 |
| Msa0469260 | Msa1113850 | 0.821693 | 3.524886e-53 | -8.615850e-47 |
| Msa0469260 | Msa1125810 | 0.822167 | 2.738024e-53 | -8.615850e-47 |
| Msa0469260 | Msa1135380 | 0.827055 | 1.932574e-54 | -8.615850e-47 |
| Msa0469260 | Msa1145020 | 0.848699 | 5.189799e-60 | -8.615850e-47 |
| Msa0469260 | Msa1171310 | 0.819863 | 9.289843e-53 | -8.615850e-47 |
| Msa0469260 | Msa1176580 | 0.802314 | 5.948941e-49 | -8.615850e-47 |
| Msa0469260 | Msa1177400 | 0.804262 | 2.350156e-49 | -8.615850e-47 |
| Msa0469260 | Msa1179520 | 0.854251 | 1.394331e-61 | -8.615850e-47 |
| Msa0469260 | Msa1183430 | 0.804543 | 2.054145e-49 | -8.615850e-47 |
| Msa0469260 | Msa1201110 | 0.829632 | 4.618828e-55 | -8.615850e-47 |
| Msa0469260 | Msa1201160 | 0.845391 | 4.182428e-59 | -8.615850e-47 |
| Msa0469260 | Msa1228190 | 0.861114 | 1.287849e-63 | -8.615850e-47 |
| Msa0469260 | Msa1233560 | 0.814467 | 1.518378e-51 | -8.615850e-47 |
| Msa0469260 | Msa1271260 | 0.874596 | 5.970120e-68 | -8.615850e-47 |
| Msa0469260 | Msa1294290 | 0.834074 | 3.697949e-56 | -8.615850e-47 |
| Msa0469260 | Msa1336620 | 0.805033 | 1.622653e-49 | -8.615850e-47 |
| Msa0469260 | Msa1339440 | 0.814546 | 1.458336e-51 | -8.615850e-47 |
| Msa0469260 | Msa1345420 | 0.862435 | 5.079003e-64 | -8.615850e-47 |
| Msa0469260 | Msa1389050 | 0.830529 | 2.790638e-55 | -8.615850e-47 |
| Msa0469260 | Msa1406780 | 0.807341 | 5.299774e-50 | -8.615850e-47 |
| Msa0469260 | Msa1420060 | 0.824197 | 9.193943e-54 | -8.615850e-47 |
| Msa0469260 | Msa1421550 | 0.822525 | 2.261054e-53 | -8.615850e-47 |
| Msa0469260 | Msa1431850 | 0.814356 | 1.606670e-51 | -8.615850e-47 |
| Msa0469260 | Msa1435480 | 0.955423 | 3.138439e-113 | -8.615850e-47 |
| Msa0469260 | Msa1458910 | 0.916478 | 1.697518e-85 | -8.615850e-47 |
| Msa0469260 | Msa1462530 | 0.821479 | 3.950859e-53 | -8.615850e-47 |
| Msa0252630 | Msa0469260 | 0.801726 | 7.860507e-49 | -8.615850e-47 |
| Msa0252770 | Msa0469260 | 0.803265 | 3.785769e-49 | -8.615850e-47 |
| Msa0273990 | Msa0469260 | 0.840309 | 9.397738e-58 | -8.615850e-47 |
| Msa0277290 | Msa0469260 | 0.832300 | 1.022610e-55 | -8.615850e-47 |
| Msa0288190 | Msa0469260 | 0.815518 | 8.874310e-52 | -8.615850e-47 |
| Msa0288200 | Msa0469260 | 0.805860 | 1.088541e-49 | -8.615850e-47 |
| Msa0298240 | Msa0469260 | 0.824384 | 8.311711e-54 | -8.615850e-47 |
| Msa0306120 | Msa0469260 | 0.801787 | 7.637611e-49 | -8.615850e-47 |
| Msa0314630 | Msa0469260 | 0.843400 | 1.434419e-58 | -8.615850e-47 |
| Msa0322830 | Msa0469260 | 0.824457 | 7.989329e-54 | -8.615850e-47 |
| Msa0322840 | Msa0469260 | 0.833039 | 6.705219e-56 | -8.615850e-47 |
| Msa0322860 | Msa0469260 | 0.822985 | 1.766615e-53 | -8.615850e-47 |
| Msa0326540 | Msa0469260 | 0.809278 | 2.048251e-50 | -8.615850e-47 |
| Msa0329620 | Msa0469260 | 0.819324 | 1.233007e-52 | -8.615850e-47 |
| Msa0331530 | Msa0469260 | 0.825809 | 3.827514e-54 | -8.615850e-47 |
| Msa0331540 | Msa0469260 | 0.818523 | 1.874669e-52 | -8.615850e-47 |
| Msa0351770 | Msa0469260 | 0.840836 | 6.841925e-58 | -8.615850e-47 |
| Msa0359250 | Msa0469260 | 0.822803 | 1.947733e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0469260 | MtrunA17_Chr3g0123851 | 92.623 | 122 | 8 | 1 | 1 | 122 | 1 | 121 | 5.08e-78 | 226 |
| Msa0469260 | MtrunA17_Chr8g0381891 | 57.143 | 126 | 47 | 3 | 1 | 122 | 1 | 123 | 8.39e-35 | 116 |
| Msa0469260 | MtrunA17_Chr3g0140691 | 41.860 | 86 | 38 | 2 | 40 | 122 | 22 | 98 | 3.68e-16 | 68.6 |
| Msa0469260 | MtrunA17_Chr4g0054461 | 42.857 | 77 | 39 | 2 | 46 | 122 | 31 | 102 | 2.87e-14 | 63.5 |
| Msa0469260 | MtrunA17_Chr2g0330071 | 42.105 | 76 | 27 | 2 | 47 | 122 | 70 | 128 | 8.73e-14 | 63.2 |
| Msa0469260 | MtrunA17_Chr4g0063871 | 38.824 | 85 | 38 | 2 | 39 | 122 | 43 | 114 | 3.18e-13 | 61.2 |
| Msa0469260 | MtrunA17_Chr2g0333071 | 34.146 | 123 | 69 | 5 | 1 | 122 | 2 | 113 | 1.19e-12 | 59.7 |
| Msa0469260 | MtrunA17_Chr5g0400761 | 37.662 | 77 | 43 | 2 | 46 | 122 | 60 | 131 | 3.68e-12 | 58.9 |
| Msa0469260 | MtrunA17_Chr8g0342581 | 37.975 | 79 | 28 | 2 | 44 | 122 | 72 | 129 | 3.92e-11 | 56.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0469260 | AT5G10310.1 | 47.573 | 103 | 44 | 3 | 26 | 122 | 24 | 122 | 2.15e-25 | 93.2 |
| Msa0469260 | AT5G10310.2 | 48.837 | 86 | 35 | 2 | 42 | 122 | 47 | 128 | 4.66e-23 | 87.4 |
Find 46 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATATAACCTCATCTTGTTAA+TGG | 0.240049 | 3_3:+71046531 | Msa0469260:CDS |
| AAGAAACAATGAAATTTCTA+AGG | 0.259527 | 3_3:-71047179 | None:intergenic |
| ATCCGTTATTATTATTACCT+TGG | 0.417680 | 3_3:-71047100 | None:intergenic |
| GGTTGATAGAAGCAAGAAAC+TGG | 0.429204 | 3_3:-71046586 | None:intergenic |
| GGCTGAACATGTTCATGGCT+TGG | 0.438174 | 3_3:-71047029 | None:intergenic |
| TGTAGTGGAGGCTGAGAGAG+AGG | 0.450565 | 3_3:-71046204 | None:intergenic |
| GACCTGGCTGAACATGTTCA+TGG | 0.454543 | 3_3:-71047034 | None:intergenic |
| CTCCAAGGTAATAATAATAA+CGG | 0.464837 | 3_3:+71047098 | Msa0469260:CDS |
| TGTGTAGGGTTTATTATTTG+AGG | 0.467998 | 3_3:+71046926 | Msa0469260:intron |
| AAGAAACTGGACACAGTAGA+AGG | 0.491502 | 3_3:-71046573 | None:intergenic |
| CAATGGCATTTCCAACTCAA+TGG | 0.495776 | 3_3:-71047137 | None:intergenic |
| AAAGAAATTACCACCTTCCA+TGG | 0.501489 | 3_3:-71047075 | None:intergenic |
| GGAACTTGCACTGCCATGCA+TGG | 0.505648 | 3_3:-71047008 | None:intergenic |
| CACTGCCTCAACTTCATCCA+TGG | 0.509432 | 3_3:+71047058 | Msa0469260:CDS |
| AGGGAAAAGCCTACCCTTGG+AGG | 0.512819 | 3_3:-71046622 | None:intergenic |
| ATTTCTAAGGGTTGAAGAAG+TGG | 0.515036 | 3_3:-71047166 | None:intergenic |
| GGAGAGGGATAGTGTAGTGG+AGG | 0.517083 | 3_3:-71046216 | None:intergenic |
| CAAATTACAAGCCATTGAGT+TGG | 0.518087 | 3_3:+71047126 | Msa0469260:CDS |
| GGTAACAATTGTGTAGAGAA+AGG | 0.520211 | 3_3:-71046237 | None:intergenic |
| AAAGGAGAGGGATAGTGTAG+TGG | 0.532448 | 3_3:-71046219 | None:intergenic |
| GGTGGTAATTTCTTTCTCCA+AGG | 0.542564 | 3_3:+71047083 | Msa0469260:CDS |
| CACATTCTGCAATTCCTCCA+AGG | 0.543179 | 3_3:+71046608 | Msa0469260:CDS |
| AGAGAGAGGGTGCAGAGTGT+TGG | 0.547078 | 3_3:-71046190 | None:intergenic |
| AGAAACAATGAAATTTCTAA+GGG | 0.551654 | 3_3:-71047178 | None:intergenic |
| AGCCATGAACATGTTCAGCC+AGG | 0.557195 | 3_3:+71047032 | Msa0469260:CDS |
| GAAGTTGAGGCAGTGTGACC+TGG | 0.560053 | 3_3:-71047050 | None:intergenic |
| AATTGTGTAGAGAAAGGAGA+GGG | 0.568206 | 3_3:-71046231 | None:intergenic |
| ACCTTCCATGGATGAAGTTG+AGG | 0.576895 | 3_3:-71047063 | None:intergenic |
| GCCTCAACTTCATCCATGGA+AGG | 0.583985 | 3_3:+71047062 | Msa0469260:CDS |
| ATATGAATTAAATGAAGCCA+TGG | 0.598193 | 3_3:-71046512 | None:intergenic |
| TTACATTTGTTGTGACATGT+AGG | 0.598733 | 3_3:-71046975 | None:intergenic |
| TGATGACCATTAACAAGATG+AGG | 0.607087 | 3_3:-71046537 | None:intergenic |
| CATTTGTTGTGACATGTAGG+TGG | 0.607908 | 3_3:-71046972 | None:intergenic |
| GTAGTGGAGGCTGAGAGAGA+GGG | 0.615370 | 3_3:-71046203 | None:intergenic |
| TCAGCAGTGATTGTATACAT+TGG | 0.616295 | 3_3:+71047306 | Msa0469260:three_prime_UTR |
| TTGAGTTGGAAATGCCATTG+TGG | 0.619909 | 3_3:+71047140 | Msa0469260:CDS |
| TGAAGAAGTGGCCACCACAA+TGG | 0.621299 | 3_3:-71047154 | None:intergenic |
| TAACCAATGTCATCCATGCA+TGG | 0.626151 | 3_3:+71046995 | Msa0469260:CDS |
| ACATTCTGCAATTCCTCCAA+GGG | 0.630675 | 3_3:+71046609 | Msa0469260:CDS |
| ACATGATAGATAGATATCCA+TGG | 0.649649 | 3_3:+71046495 | Msa0469260:exon |
| AGTGTTGGCAGAAAAGTGAA+AGG | 0.656008 | 3_3:-71046175 | None:intergenic |
| TCAACTTCATCCATGGAAGG+TGG | 0.660618 | 3_3:+71047065 | Msa0469260:CDS |
| CTGCCATGCATGGATGACAT+TGG | 0.662535 | 3_3:-71046998 | None:intergenic |
| CTTGGAGGAATTGCAGAATG+TGG | 0.672231 | 3_3:-71046607 | None:intergenic |
| AGTTGGAAATGCCATTGTGG+TGG | 0.687706 | 3_3:+71047143 | Msa0469260:CDS |
| CAATTGTGTAGAGAAAGGAG+AGG | 0.717317 | 3_3:-71046232 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTTTGAATTCACTATAAAAT+TGG | - | chr3_3:71046828-71046847 | None:intergenic | 20.0% |
| !! | AGTTAACAAACTTAATTAAC+TGG | - | chr3_3:71046903-71046922 | None:intergenic | 20.0% |
| !! | AGAAACAATGAAATTTCTAA+GGG | - | chr3_3:71047181-71047200 | None:intergenic | 20.0% |
| !! | AAGAAACAATGAAATTTCTA+AGG | - | chr3_3:71047182-71047201 | None:intergenic | 20.0% |
| !! | GTTTGAATTCACTATAAAAT+TGG | - | chr3_3:71046828-71046847 | None:intergenic | 20.0% |
| !! | AGTTAACAAACTTAATTAAC+TGG | - | chr3_3:71046903-71046922 | None:intergenic | 20.0% |
| !! | AGAAACAATGAAATTTCTAA+GGG | - | chr3_3:71047181-71047200 | None:intergenic | 20.0% |
| !! | AAGAAACAATGAAATTTCTA+AGG | - | chr3_3:71047182-71047201 | None:intergenic | 20.0% |
| !!! | GTTTTTTTCTAGTTATGTGT+TGG | - | chr3_3:71046265-71046284 | None:intergenic | 25.0% |
| !! | AATGACAAACTTTTCATTCT+TGG | + | chr3_3:71046309-71046328 | Msa0469260:five_prime_UTR | 25.0% |
| !!! | TTATTTTGTCACATTACAAC+TGG | + | chr3_3:71046380-71046399 | Msa0469260:five_prime_UTR | 25.0% |
| ! | ATATGAATTAAATGAAGCCA+TGG | - | chr3_3:71046515-71046534 | None:intergenic | 25.0% |
| ! | ATATAACCTCATCTTGTTAA+TGG | + | chr3_3:71046531-71046550 | Msa0469260:CDS | 25.0% |
| !!! | TAGTTGGTTTTAAAAGGAAT+CGG | + | chr3_3:71046692-71046711 | Msa0469260:intron | 25.0% |
| !! | ACAGTATATTACTGTGATTT+TGG | + | chr3_3:71046750-71046769 | Msa0469260:intron | 25.0% |
| ! | TGAATTCACTATAAAATTGG+CGG | - | chr3_3:71046825-71046844 | None:intergenic | 25.0% |
| ! | TATTATTTGAGGAGAAAAAC+AGG | + | chr3_3:71046937-71046956 | Msa0469260:CDS | 25.0% |
| ! | CTCCAAGGTAATAATAATAA+CGG | + | chr3_3:71047098-71047117 | Msa0469260:CDS | 25.0% |
| ! | ATCCGTTATTATTATTACCT+TGG | - | chr3_3:71047103-71047122 | None:intergenic | 25.0% |
| !!! | GTTTTTTTCTAGTTATGTGT+TGG | - | chr3_3:71046265-71046284 | None:intergenic | 25.0% |
| !! | AATGACAAACTTTTCATTCT+TGG | + | chr3_3:71046309-71046328 | Msa0469260:five_prime_UTR | 25.0% |
| !!! | TTATTTTGTCACATTACAAC+TGG | + | chr3_3:71046380-71046399 | Msa0469260:five_prime_UTR | 25.0% |
| ! | ATATGAATTAAATGAAGCCA+TGG | - | chr3_3:71046515-71046534 | None:intergenic | 25.0% |
| ! | ATATAACCTCATCTTGTTAA+TGG | + | chr3_3:71046531-71046550 | Msa0469260:CDS | 25.0% |
| !!! | TAGTTGGTTTTAAAAGGAAT+CGG | + | chr3_3:71046692-71046711 | Msa0469260:intron | 25.0% |
| !! | ACAGTATATTACTGTGATTT+TGG | + | chr3_3:71046750-71046769 | Msa0469260:intron | 25.0% |
| ! | TGAATTCACTATAAAATTGG+CGG | - | chr3_3:71046825-71046844 | None:intergenic | 25.0% |
| ! | TATTATTTGAGGAGAAAAAC+AGG | + | chr3_3:71046937-71046956 | Msa0469260:CDS | 25.0% |
| ! | CTCCAAGGTAATAATAATAA+CGG | + | chr3_3:71047098-71047117 | Msa0469260:CDS | 25.0% |
| ! | ATCCGTTATTATTATTACCT+TGG | - | chr3_3:71047103-71047122 | None:intergenic | 25.0% |
| !!! | ATCTAGTTTTGAGCAATGAA+TGG | - | chr3_3:71046287-71046306 | None:intergenic | 30.0% |
| ACATGATAGATAGATATCCA+TGG | + | chr3_3:71046495-71046514 | Msa0469260:exon | 30.0% | |
| TTATGTGTATGTTGCATAGT+TGG | + | chr3_3:71046676-71046695 | Msa0469260:intron | 30.0% | |
| !!! | GTTGCATAGTTGGTTTTAAA+AGG | + | chr3_3:71046686-71046705 | Msa0469260:intron | 30.0% |
| ACAGTAATATACTGTGATTC+TGG | - | chr3_3:71046745-71046764 | None:intergenic | 30.0% | |
| ! | ATCCTCATTTTGTTGAAACT+TGG | - | chr3_3:71046856-71046875 | None:intergenic | 30.0% |
| ACTTAATTAACTGGTGAGTT+TGG | - | chr3_3:71046894-71046913 | None:intergenic | 30.0% | |
| !! | AGTTTGTTAACTATGTGTGT+AGG | + | chr3_3:71046911-71046930 | Msa0469260:intron | 30.0% |
| ! | GTTTGTTAACTATGTGTGTA+GGG | + | chr3_3:71046912-71046931 | Msa0469260:intron | 30.0% |
| TGTGTAGGGTTTATTATTTG+AGG | + | chr3_3:71046926-71046945 | Msa0469260:intron | 30.0% | |
| !! | TTACATTTGTTGTGACATGT+AGG | - | chr3_3:71046978-71046997 | None:intergenic | 30.0% |
| !!! | ATCTAGTTTTGAGCAATGAA+TGG | - | chr3_3:71046287-71046306 | None:intergenic | 30.0% |
| ACATGATAGATAGATATCCA+TGG | + | chr3_3:71046495-71046514 | Msa0469260:exon | 30.0% | |
| TTATGTGTATGTTGCATAGT+TGG | + | chr3_3:71046676-71046695 | Msa0469260:intron | 30.0% | |
| !!! | GTTGCATAGTTGGTTTTAAA+AGG | + | chr3_3:71046686-71046705 | Msa0469260:intron | 30.0% |
| ACAGTAATATACTGTGATTC+TGG | - | chr3_3:71046745-71046764 | None:intergenic | 30.0% | |
| ! | ATCCTCATTTTGTTGAAACT+TGG | - | chr3_3:71046856-71046875 | None:intergenic | 30.0% |
| ACTTAATTAACTGGTGAGTT+TGG | - | chr3_3:71046894-71046913 | None:intergenic | 30.0% | |
| !! | AGTTTGTTAACTATGTGTGT+AGG | + | chr3_3:71046911-71046930 | Msa0469260:intron | 30.0% |
| ! | GTTTGTTAACTATGTGTGTA+GGG | + | chr3_3:71046912-71046931 | Msa0469260:intron | 30.0% |
| TGTGTAGGGTTTATTATTTG+AGG | + | chr3_3:71046926-71046945 | Msa0469260:intron | 30.0% | |
| !! | TTACATTTGTTGTGACATGT+AGG | - | chr3_3:71046978-71046997 | None:intergenic | 30.0% |
| AATTGTGTAGAGAAAGGAGA+GGG | - | chr3_3:71046234-71046253 | None:intergenic | 35.0% | |
| GGTAACAATTGTGTAGAGAA+AGG | - | chr3_3:71046240-71046259 | None:intergenic | 35.0% | |
| !!! | TTTTCTAGTTATGTGTTGGC+AGG | - | chr3_3:71046261-71046280 | None:intergenic | 35.0% |
| TGATGACCATTAACAAGATG+AGG | - | chr3_3:71046540-71046559 | None:intergenic | 35.0% | |
| AGTGAATGAGGGAGAAAAAA+GGG | - | chr3_3:71046644-71046663 | None:intergenic | 35.0% | |
| GCAACATACACATAAAGCAA+AGG | - | chr3_3:71046671-71046690 | None:intergenic | 35.0% | |
| AATTGGCGGAAACTATACTT+CGG | - | chr3_3:71046811-71046830 | None:intergenic | 35.0% | |
| CACCAAGTTTCAACAAAATG+AGG | + | chr3_3:71046851-71046870 | Msa0469260:intron | 35.0% | |
| TTTGAGGAGAAAAACAGGTT+AGG | + | chr3_3:71046942-71046961 | Msa0469260:CDS | 35.0% | |
| AAAGAAATTACCACCTTCCA+TGG | - | chr3_3:71047078-71047097 | None:intergenic | 35.0% | |
| CAAATTACAAGCCATTGAGT+TGG | + | chr3_3:71047126-71047145 | Msa0469260:CDS | 35.0% | |
| ! | ATTTCTAAGGGTTGAAGAAG+TGG | - | chr3_3:71047169-71047188 | None:intergenic | 35.0% |
| TCAGCAGTGATTGTATACAT+TGG | + | chr3_3:71047306-71047325 | Msa0469260:three_prime_UTR | 35.0% | |
| AATTGTGTAGAGAAAGGAGA+GGG | - | chr3_3:71046234-71046253 | None:intergenic | 35.0% | |
| GGTAACAATTGTGTAGAGAA+AGG | - | chr3_3:71046240-71046259 | None:intergenic | 35.0% | |
| !!! | TTTTCTAGTTATGTGTTGGC+AGG | - | chr3_3:71046261-71046280 | None:intergenic | 35.0% |
| TGATGACCATTAACAAGATG+AGG | - | chr3_3:71046540-71046559 | None:intergenic | 35.0% | |
| AGTGAATGAGGGAGAAAAAA+GGG | - | chr3_3:71046644-71046663 | None:intergenic | 35.0% | |
| GCAACATACACATAAAGCAA+AGG | - | chr3_3:71046671-71046690 | None:intergenic | 35.0% | |
| AATTGGCGGAAACTATACTT+CGG | - | chr3_3:71046811-71046830 | None:intergenic | 35.0% | |
| CACCAAGTTTCAACAAAATG+AGG | + | chr3_3:71046851-71046870 | Msa0469260:intron | 35.0% | |
| TTTGAGGAGAAAAACAGGTT+AGG | + | chr3_3:71046942-71046961 | Msa0469260:CDS | 35.0% | |
| AAAGAAATTACCACCTTCCA+TGG | - | chr3_3:71047078-71047097 | None:intergenic | 35.0% | |
| CAAATTACAAGCCATTGAGT+TGG | + | chr3_3:71047126-71047145 | Msa0469260:CDS | 35.0% | |
| ! | ATTTCTAAGGGTTGAAGAAG+TGG | - | chr3_3:71047169-71047188 | None:intergenic | 35.0% |
| TCAGCAGTGATTGTATACAT+TGG | + | chr3_3:71047306-71047325 | Msa0469260:three_prime_UTR | 35.0% | |
| CAATTGTGTAGAGAAAGGAG+AGG | - | chr3_3:71046235-71046254 | None:intergenic | 40.0% | |
| AAGAAACTGGACACAGTAGA+AGG | - | chr3_3:71046576-71046595 | None:intergenic | 40.0% | |
| !! | GGTTGATAGAAGCAAGAAAC+TGG | - | chr3_3:71046589-71046608 | None:intergenic | 40.0% |
| ACATTCTGCAATTCCTCCAA+GGG | + | chr3_3:71046609-71046628 | Msa0469260:CDS | 40.0% | |
| GAGTGAATGAGGGAGAAAAA+AGG | - | chr3_3:71046645-71046664 | None:intergenic | 40.0% | |
| GCAAAGGAAAGAGTGAATGA+GGG | - | chr3_3:71046655-71046674 | None:intergenic | 40.0% | |
| AGCAAAGGAAAGAGTGAATG+AGG | - | chr3_3:71046656-71046675 | None:intergenic | 40.0% | |
| CTTCGGAGCTTCAACAAAAT+CGG | - | chr3_3:71046794-71046813 | None:intergenic | 40.0% | |
| TGGTGAGTTTGGCAAAATCA+AGG | - | chr3_3:71046883-71046902 | None:intergenic | 40.0% | |
| !! | CATTTGTTGTGACATGTAGG+TGG | - | chr3_3:71046975-71046994 | None:intergenic | 40.0% |
| TAACCAATGTCATCCATGCA+TGG | + | chr3_3:71046995-71047014 | Msa0469260:CDS | 40.0% | |
| GGTGGTAATTTCTTTCTCCA+AGG | + | chr3_3:71047083-71047102 | Msa0469260:CDS | 40.0% | |
| CAATGGCATTTCCAACTCAA+TGG | - | chr3_3:71047140-71047159 | None:intergenic | 40.0% | |
| !! | TTGAGTTGGAAATGCCATTG+TGG | + | chr3_3:71047140-71047159 | Msa0469260:CDS | 40.0% |
| CAATTGTGTAGAGAAAGGAG+AGG | - | chr3_3:71046235-71046254 | None:intergenic | 40.0% | |
| AAGAAACTGGACACAGTAGA+AGG | - | chr3_3:71046576-71046595 | None:intergenic | 40.0% | |
| !! | GGTTGATAGAAGCAAGAAAC+TGG | - | chr3_3:71046589-71046608 | None:intergenic | 40.0% |
| ACATTCTGCAATTCCTCCAA+GGG | + | chr3_3:71046609-71046628 | Msa0469260:CDS | 40.0% | |
| GAGTGAATGAGGGAGAAAAA+AGG | - | chr3_3:71046645-71046664 | None:intergenic | 40.0% | |
| GCAAAGGAAAGAGTGAATGA+GGG | - | chr3_3:71046655-71046674 | None:intergenic | 40.0% | |
| AGCAAAGGAAAGAGTGAATG+AGG | - | chr3_3:71046656-71046675 | None:intergenic | 40.0% | |
| CTTCGGAGCTTCAACAAAAT+CGG | - | chr3_3:71046794-71046813 | None:intergenic | 40.0% | |
| TGGTGAGTTTGGCAAAATCA+AGG | - | chr3_3:71046883-71046902 | None:intergenic | 40.0% | |
| !! | CATTTGTTGTGACATGTAGG+TGG | - | chr3_3:71046975-71046994 | None:intergenic | 40.0% |
| TAACCAATGTCATCCATGCA+TGG | + | chr3_3:71046995-71047014 | Msa0469260:CDS | 40.0% | |
| GGTGGTAATTTCTTTCTCCA+AGG | + | chr3_3:71047083-71047102 | Msa0469260:CDS | 40.0% | |
| CAATGGCATTTCCAACTCAA+TGG | - | chr3_3:71047140-71047159 | None:intergenic | 40.0% | |
| !! | TTGAGTTGGAAATGCCATTG+TGG | + | chr3_3:71047140-71047159 | Msa0469260:CDS | 40.0% |
| AAAGGAGAGGGATAGTGTAG+TGG | - | chr3_3:71046222-71046241 | None:intergenic | 45.0% | |
| CTTGGAGGAATTGCAGAATG+TGG | - | chr3_3:71046610-71046629 | None:intergenic | 45.0% | |
| CACATTCTGCAATTCCTCCA+AGG | + | chr3_3:71046608-71046627 | Msa0469260:CDS | 45.0% | |
| AAAAGGGAAAAGCCTACCCT+TGG | - | chr3_3:71046628-71046647 | None:intergenic | 45.0% | |
| GGAATCGGTGCATGTTTGAA+TGG | + | chr3_3:71046707-71046726 | Msa0469260:intron | 45.0% | |
| TCGGTGCATGTTTGAATGGA+CGG | + | chr3_3:71046711-71046730 | Msa0469260:intron | 45.0% | |
| ACCTTCCATGGATGAAGTTG+AGG | - | chr3_3:71047066-71047085 | None:intergenic | 45.0% | |
| TCAACTTCATCCATGGAAGG+TGG | + | chr3_3:71047065-71047084 | Msa0469260:CDS | 45.0% | |
| AGTTGGAAATGCCATTGTGG+TGG | + | chr3_3:71047143-71047162 | Msa0469260:CDS | 45.0% | |
| AAAGGAGAGGGATAGTGTAG+TGG | - | chr3_3:71046222-71046241 | None:intergenic | 45.0% | |
| CTTGGAGGAATTGCAGAATG+TGG | - | chr3_3:71046610-71046629 | None:intergenic | 45.0% | |
| CACATTCTGCAATTCCTCCA+AGG | + | chr3_3:71046608-71046627 | Msa0469260:CDS | 45.0% | |
| AAAAGGGAAAAGCCTACCCT+TGG | - | chr3_3:71046628-71046647 | None:intergenic | 45.0% | |
| GGAATCGGTGCATGTTTGAA+TGG | + | chr3_3:71046707-71046726 | Msa0469260:intron | 45.0% | |
| TCGGTGCATGTTTGAATGGA+CGG | + | chr3_3:71046711-71046730 | Msa0469260:intron | 45.0% | |
| ACCTTCCATGGATGAAGTTG+AGG | - | chr3_3:71047066-71047085 | None:intergenic | 45.0% | |
| TCAACTTCATCCATGGAAGG+TGG | + | chr3_3:71047065-71047084 | Msa0469260:CDS | 45.0% | |
| AGTTGGAAATGCCATTGTGG+TGG | + | chr3_3:71047143-71047162 | Msa0469260:CDS | 45.0% | |
| !! | TAAATAAATAAAAACAAAAA+AGG | - | chr3_3:71047263-71047282 | None:intergenic | 5.0% |
| !! | TAAATAAATAAAAACAAAAA+AGG | - | chr3_3:71047263-71047282 | None:intergenic | 5.0% |
| TCTGCAATTCCTCCAAGGGT+AGG | + | chr3_3:71046613-71046632 | Msa0469260:intron | 50.0% | |
| CTGCCATGCATGGATGACAT+TGG | - | chr3_3:71047001-71047020 | None:intergenic | 50.0% | |
| GGCTGAACATGTTCATGGCT+TGG | - | chr3_3:71047032-71047051 | None:intergenic | 50.0% | |
| AGCCATGAACATGTTCAGCC+AGG | + | chr3_3:71047032-71047051 | Msa0469260:CDS | 50.0% | |
| GACCTGGCTGAACATGTTCA+TGG | - | chr3_3:71047037-71047056 | None:intergenic | 50.0% | |
| CACTGCCTCAACTTCATCCA+TGG | + | chr3_3:71047058-71047077 | Msa0469260:CDS | 50.0% | |
| GCCTCAACTTCATCCATGGA+AGG | + | chr3_3:71047062-71047081 | Msa0469260:CDS | 50.0% | |
| TGAAGAAGTGGCCACCACAA+TGG | - | chr3_3:71047157-71047176 | None:intergenic | 50.0% | |
| TCTGCAATTCCTCCAAGGGT+AGG | + | chr3_3:71046613-71046632 | Msa0469260:intron | 50.0% | |
| CTGCCATGCATGGATGACAT+TGG | - | chr3_3:71047001-71047020 | None:intergenic | 50.0% | |
| GGCTGAACATGTTCATGGCT+TGG | - | chr3_3:71047032-71047051 | None:intergenic | 50.0% | |
| AGCCATGAACATGTTCAGCC+AGG | + | chr3_3:71047032-71047051 | Msa0469260:CDS | 50.0% | |
| GACCTGGCTGAACATGTTCA+TGG | - | chr3_3:71047037-71047056 | None:intergenic | 50.0% | |
| CACTGCCTCAACTTCATCCA+TGG | + | chr3_3:71047058-71047077 | Msa0469260:CDS | 50.0% | |
| GCCTCAACTTCATCCATGGA+AGG | + | chr3_3:71047062-71047081 | Msa0469260:CDS | 50.0% | |
| TGAAGAAGTGGCCACCACAA+TGG | - | chr3_3:71047157-71047176 | None:intergenic | 50.0% | |
| ! | AGAGAGAGGGTGCAGAGTGT+TGG | - | chr3_3:71046193-71046212 | None:intergenic | 55.0% |
| ! | GTAGTGGAGGCTGAGAGAGA+GGG | - | chr3_3:71046206-71046225 | None:intergenic | 55.0% |
| ! | TGTAGTGGAGGCTGAGAGAG+AGG | - | chr3_3:71046207-71046226 | None:intergenic | 55.0% |
| GGAGAGGGATAGTGTAGTGG+AGG | - | chr3_3:71046219-71046238 | None:intergenic | 55.0% | |
| AGGGAAAAGCCTACCCTTGG+AGG | - | chr3_3:71046625-71046644 | None:intergenic | 55.0% | |
| GGAACTTGCACTGCCATGCA+TGG | - | chr3_3:71047011-71047030 | None:intergenic | 55.0% | |
| GAAGTTGAGGCAGTGTGACC+TGG | - | chr3_3:71047053-71047072 | None:intergenic | 55.0% | |
| ! | AGAGAGAGGGTGCAGAGTGT+TGG | - | chr3_3:71046193-71046212 | None:intergenic | 55.0% |
| ! | GTAGTGGAGGCTGAGAGAGA+GGG | - | chr3_3:71046206-71046225 | None:intergenic | 55.0% |
| ! | TGTAGTGGAGGCTGAGAGAG+AGG | - | chr3_3:71046207-71046226 | None:intergenic | 55.0% |
| GGAGAGGGATAGTGTAGTGG+AGG | - | chr3_3:71046219-71046238 | None:intergenic | 55.0% | |
| AGGGAAAAGCCTACCCTTGG+AGG | - | chr3_3:71046625-71046644 | None:intergenic | 55.0% | |
| GGAACTTGCACTGCCATGCA+TGG | - | chr3_3:71047011-71047030 | None:intergenic | 55.0% | |
| GAAGTTGAGGCAGTGTGACC+TGG | - | chr3_3:71047053-71047072 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 71046177 | 71047355 | 71046177 | ID=Msa0469260;Name=Msa0469260 |
| chr3_3 | mRNA | 71046177 | 71047355 | 71046177 | ID=Msa0469260-mRNA-1;Parent=Msa0469260;Name=Msa0469260-mRNA-1;_AED=0.00;_eAED=0.00;_QI=337|1|1|1|1|1|2|171|122 |
| chr3_3 | exon | 71046177 | 71046630 | 71046177 | ID=Msa0469260-mRNA-1:exon:17370;Parent=Msa0469260-mRNA-1 |
| chr3_3 | exon | 71046933 | 71047355 | 71046933 | ID=Msa0469260-mRNA-1:exon:17371;Parent=Msa0469260-mRNA-1 |
| chr3_3 | five_prime_UTR | 71046177 | 71046513 | 71046177 | ID=Msa0469260-mRNA-1:five_prime_utr;Parent=Msa0469260-mRNA-1 |
| chr3_3 | CDS | 71046514 | 71046630 | 71046514 | ID=Msa0469260-mRNA-1:cds;Parent=Msa0469260-mRNA-1 |
| chr3_3 | CDS | 71046933 | 71047184 | 71046933 | ID=Msa0469260-mRNA-1:cds;Parent=Msa0469260-mRNA-1 |
| chr3_3 | three_prime_UTR | 71047185 | 71047355 | 71047185 | ID=Msa0469260-mRNA-1:three_prime_utr;Parent=Msa0469260-mRNA-1 |
| Gene Sequence |
| Protein sequence |
