Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0423100 | AES72186.1 | 60.656 | 122 | 8 | 2 | 1 | 83 | 1 | 121 | 4.00e-35 | 125 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0423100 | G7J3Q1 | 60.656 | 122 | 8 | 2 | 1 | 83 | 1 | 121 | 1.91e-35 | 125 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015710 | Msa0423100 | 0.810334 | 1.213726e-50 | -8.615850e-47 |
| Msa0019600 | Msa0423100 | 0.800117 | 1.674960e-48 | -8.615850e-47 |
| Msa0062440 | Msa0423100 | 0.808716 | 2.700909e-50 | -8.615850e-47 |
| Msa0104500 | Msa0423100 | 0.833242 | 5.968548e-56 | -8.615850e-47 |
| Msa0124130 | Msa0423100 | 0.829072 | 6.314091e-55 | -8.615850e-47 |
| Msa0130570 | Msa0423100 | 0.806010 | 1.012458e-49 | -8.615850e-47 |
| Msa0149140 | Msa0423100 | 0.807965 | 3.906063e-50 | -8.615850e-47 |
| Msa0152480 | Msa0423100 | 0.818217 | 2.200060e-52 | -8.615850e-47 |
| Msa0152500 | Msa0423100 | 0.812409 | 4.301673e-51 | -8.615850e-47 |
| Msa0156250 | Msa0423100 | 0.803317 | 3.692349e-49 | -8.615850e-47 |
| Msa0176470 | Msa0423100 | 0.809904 | 1.502556e-50 | -8.615850e-47 |
| Msa0191040 | Msa0423100 | 0.808788 | 2.607781e-50 | -8.615850e-47 |
| Msa0194380 | Msa0423100 | 0.848446 | 6.098877e-60 | -8.615850e-47 |
| Msa0203030 | Msa0423100 | 0.818684 | 1.723973e-52 | -8.615850e-47 |
| Msa0206800 | Msa0423100 | 0.836334 | 9.945093e-57 | -8.615850e-47 |
| Msa0212150 | Msa0423100 | 0.809075 | 2.263607e-50 | -8.615850e-47 |
| Msa0219190 | Msa0423100 | 0.830341 | 3.101805e-55 | -8.615850e-47 |
| Msa0233340 | Msa0423100 | 0.807978 | 3.880492e-50 | -8.615850e-47 |
| Msa0236110 | Msa0423100 | 0.827219 | 1.765046e-54 | -8.615850e-47 |
| Msa0373960 | Msa0423100 | 0.923312 | 3.136762e-89 | -8.615850e-47 |
| Msa0382010 | Msa0423100 | 0.815023 | 1.143265e-51 | -8.615850e-47 |
| Msa0406000 | Msa0423100 | 0.834240 | 3.361264e-56 | -8.615850e-47 |
| Msa0413930 | Msa0423100 | 0.803199 | 3.905917e-49 | -8.615850e-47 |
| Msa0423100 | Msa0424340 | 0.810400 | 1.174753e-50 | -8.615850e-47 |
| Msa0423100 | Msa0441590 | 0.828998 | 6.582157e-55 | -8.615850e-47 |
| Msa0423100 | Msa0451400 | 0.846827 | 1.700818e-59 | -8.615850e-47 |
| Msa0423100 | Msa0469260 | 0.909159 | 7.745931e-82 | -8.615850e-47 |
| Msa0423100 | Msa0492190 | 0.820766 | 5.765921e-53 | -8.615850e-47 |
| Msa0423100 | Msa0514980 | 0.808209 | 3.465359e-50 | -8.615850e-47 |
| Msa0423100 | Msa0520510 | 0.864356 | 1.289718e-64 | -8.615850e-47 |
| Msa0423100 | Msa0534930 | 0.832653 | 8.361307e-56 | -8.615850e-47 |
| Msa0423100 | Msa0535040 | 0.819992 | 8.676505e-53 | -8.615850e-47 |
| Msa0423100 | Msa0575740 | 0.860593 | 1.853264e-63 | -8.615850e-47 |
| Msa0423100 | Msa0591790 | 0.838932 | 2.143821e-57 | -8.615850e-47 |
| Msa0423100 | Msa0591800 | 0.876686 | 1.145956e-68 | -8.615850e-47 |
| Msa0423100 | Msa0667850 | 0.847097 | 1.434740e-59 | -8.615850e-47 |
| Msa0423100 | Msa0669840 | 0.856326 | 3.469563e-62 | -8.615850e-47 |
| Msa0423100 | Msa0707220 | 0.807008 | 6.233913e-50 | -8.615850e-47 |
| Msa0423100 | Msa0711320 | 0.800605 | 1.332786e-48 | -8.615850e-47 |
| Msa0423100 | Msa0725860 | 0.860014 | 2.774302e-63 | -8.615850e-47 |
| Msa0423100 | Msa0742180 | 0.837019 | 6.652019e-57 | -8.615850e-47 |
| Msa0423100 | Msa0786040 | 0.837612 | 4.690589e-57 | -8.615850e-47 |
| Msa0423100 | Msa0823400 | 0.856175 | 3.843519e-62 | -8.615850e-47 |
| Msa0423100 | Msa0845940 | 0.833543 | 5.020643e-56 | -8.615850e-47 |
| Msa0423100 | Msa0860170 | 0.827566 | 1.457902e-54 | -8.615850e-47 |
| Msa0423100 | Msa0862310 | 0.829568 | 4.785030e-55 | -8.615850e-47 |
| Msa0423100 | Msa0885060 | 0.827810 | 1.273455e-54 | -8.615850e-47 |
| Msa0423100 | Msa0896350 | 0.808622 | 2.828675e-50 | -8.615850e-47 |
| Msa0423100 | Msa0899950 | 0.853509 | 2.279302e-61 | -8.615850e-47 |
| Msa0423100 | Msa0922750 | 0.817820 | 2.704783e-52 | -8.615850e-47 |
| Msa0423100 | Msa0927120 | 0.825980 | 3.487050e-54 | -8.615850e-47 |
| Msa0423100 | Msa0929870 | 0.821057 | 4.943619e-53 | -8.615850e-47 |
| Msa0423100 | Msa0961560 | 0.837455 | 5.146335e-57 | -8.615850e-47 |
| Msa0423100 | Msa0965310 | 0.869296 | 3.443547e-66 | -8.615850e-47 |
| Msa0423100 | Msa0979510 | 0.819894 | 9.136463e-53 | -8.615850e-47 |
| Msa0423100 | Msa0996270 | 0.853776 | 1.911191e-61 | -8.615850e-47 |
| Msa0423100 | Msa0999300 | 0.817187 | 3.754820e-52 | -8.615850e-47 |
| Msa0423100 | Msa0999340 | 0.901497 | 2.523517e-78 | -8.615850e-47 |
| Msa0423100 | Msa0999350 | 0.875156 | 3.848024e-68 | -8.615850e-47 |
| Msa0423100 | Msa0999360 | 0.842422 | 2.611215e-58 | -8.615850e-47 |
| Msa0423100 | Msa0999390 | 0.894827 | 1.709572e-75 | -8.615850e-47 |
| Msa0423100 | Msa0999400 | 0.867927 | 9.535729e-66 | -8.615850e-47 |
| Msa0423100 | Msa0999410 | 0.835615 | 1.513457e-56 | -8.615850e-47 |
| Msa0423100 | Msa0999700 | 0.852126 | 5.664821e-61 | -8.615850e-47 |
| Msa0423100 | Msa1001890 | 0.806630 | 7.492909e-50 | -8.615850e-47 |
| Msa0423100 | Msa1033560 | 0.814135 | 1.797348e-51 | -8.615850e-47 |
| Msa0423100 | Msa1034680 | 0.821023 | 5.032814e-53 | -8.615850e-47 |
| Msa0423100 | Msa1037890 | 0.802430 | 5.630561e-49 | -8.615850e-47 |
| Msa0423100 | Msa1042670 | 0.802148 | 6.435787e-49 | -8.615850e-47 |
| Msa0423100 | Msa1073340 | 0.854746 | 1.002384e-61 | -8.615850e-47 |
| Msa0423100 | Msa1079930 | 0.815377 | 9.535911e-52 | -8.615850e-47 |
| Msa0423100 | Msa1084520 | 0.812416 | 4.286513e-51 | -8.615850e-47 |
| Msa0423100 | Msa1092020 | 0.808311 | 3.296291e-50 | -8.615850e-47 |
| Msa0423100 | Msa1113850 | 0.827417 | 1.582927e-54 | -8.615850e-47 |
| Msa0423100 | Msa1125810 | 0.825390 | 4.811690e-54 | -8.615850e-47 |
| Msa0423100 | Msa1135380 | 0.804215 | 2.404428e-49 | -8.615850e-47 |
| Msa0423100 | Msa1145020 | 0.866186 | 3.426539e-65 | -8.615850e-47 |
| Msa0423100 | Msa1160400 | 0.802641 | 5.094791e-49 | -8.615850e-47 |
| Msa0423100 | Msa1171310 | 0.822339 | 2.496928e-53 | -8.615850e-47 |
| Msa0423100 | Msa1177400 | 0.801333 | 9.461165e-49 | -8.615850e-47 |
| Msa0423100 | Msa1179360 | 0.832575 | 8.741999e-56 | -8.615850e-47 |
| Msa0423100 | Msa1179520 | 0.834616 | 2.704199e-56 | -8.615850e-47 |
| Msa0423100 | Msa1183430 | 0.834824 | 2.396746e-56 | -8.615850e-47 |
| Msa0423100 | Msa1201110 | 0.805532 | 1.275561e-49 | -8.615850e-47 |
| Msa0423100 | Msa1201160 | 0.830696 | 2.538933e-55 | -8.615850e-47 |
| Msa0423100 | Msa1228190 | 0.878762 | 2.160013e-69 | -8.615850e-47 |
| Msa0423100 | Msa1233560 | 0.802012 | 6.864487e-49 | -8.615850e-47 |
| Msa0423100 | Msa1271260 | 0.903276 | 4.098368e-79 | -8.615850e-47 |
| Msa0423100 | Msa1294290 | 0.815964 | 7.058361e-52 | -8.615850e-47 |
| Msa0423100 | Msa1339440 | 0.807627 | 4.608495e-50 | -8.615850e-47 |
| Msa0423100 | Msa1345420 | 0.850990 | 1.187208e-60 | -8.615850e-47 |
| Msa0423100 | Msa1379970 | 0.820399 | 7.003294e-53 | -8.615850e-47 |
| Msa0423100 | Msa1389050 | 0.861880 | 7.516582e-64 | -8.615850e-47 |
| Msa0423100 | Msa1420060 | 0.833145 | 6.307514e-56 | -8.615850e-47 |
| Msa0423100 | Msa1421550 | 0.821124 | 4.771021e-53 | -8.615850e-47 |
| Msa0423100 | Msa1435480 | 0.956278 | 4.296883e-114 | -8.615850e-47 |
| Msa0423100 | Msa1442630 | 0.810087 | 1.371817e-50 | -8.615850e-47 |
| Msa0423100 | Msa1456730 | 0.816081 | 6.646633e-52 | -8.615850e-47 |
| Msa0423100 | Msa1458910 | 0.955770 | 1.408576e-113 | -8.615850e-47 |
| Msa0423100 | Msa1462530 | 0.812577 | 3.953824e-51 | -8.615850e-47 |
| Msa0252630 | Msa0423100 | 0.827258 | 1.727464e-54 | -8.615850e-47 |
| Msa0252770 | Msa0423100 | 0.815361 | 9.618462e-52 | -8.615850e-47 |
| Msa0273990 | Msa0423100 | 0.805681 | 1.186804e-49 | -8.615850e-47 |
| Msa0277290 | Msa0423100 | 0.836296 | 1.016783e-56 | -8.615850e-47 |
| Msa0280750 | Msa0423100 | 0.811283 | 7.563632e-51 | -8.615850e-47 |
| Msa0288190 | Msa0423100 | 0.837744 | 4.338262e-57 | -8.615850e-47 |
| Msa0288200 | Msa0423100 | 0.832696 | 8.159818e-56 | -8.615850e-47 |
| Msa0291330 | Msa0423100 | 0.831593 | 1.528895e-55 | -8.615850e-47 |
| Msa0298240 | Msa0423100 | 0.834757 | 2.491646e-56 | -8.615850e-47 |
| Msa0306120 | Msa0423100 | 0.806731 | 7.133388e-50 | -8.615850e-47 |
| Msa0311690 | Msa0423100 | 0.805486 | 1.304151e-49 | -8.615850e-47 |
| Msa0314630 | Msa0423100 | 0.827810 | 1.273647e-54 | -8.615850e-47 |
| Msa0322830 | Msa0423100 | 0.830258 | 3.250373e-55 | -8.615850e-47 |
| Msa0322840 | Msa0423100 | 0.837226 | 5.888588e-57 | -8.615850e-47 |
| Msa0322860 | Msa0423100 | 0.863307 | 2.732602e-64 | -8.615850e-47 |
| Msa0326540 | Msa0423100 | 0.823317 | 1.478648e-53 | -8.615850e-47 |
| Msa0329620 | Msa0423100 | 0.832621 | 8.515141e-56 | -8.615850e-47 |
| Msa0331530 | Msa0423100 | 0.800130 | 1.664989e-48 | -8.615850e-47 |
| Msa0334500 | Msa0423100 | 0.802152 | 6.425575e-49 | -8.615850e-47 |
| Msa0351770 | Msa0423100 | 0.828383 | 9.271561e-55 | -8.615850e-47 |
| Msa0359250 | Msa0423100 | 0.829190 | 5.914312e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0423100 | MtrunA17_Chr3g0123851 | 60.656 | 122 | 8 | 2 | 1 | 83 | 1 | 121 | 3.68e-39 | 125 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 34 sgRNAs with CRISPR-Local
Find 144 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATATAACCTCATCTTGTTAA+TGG | 0.240049 | 3_2:+72779930 | Msa0423100:CDS |
| TGTAGTGGAGGCTGAGATAG+AGG | 0.383685 | 3_2:-72779603 | None:intergenic |
| ATCCGTTATTATTATTACCT+TGG | 0.417680 | 3_2:-72780487 | None:intergenic |
| GGTTGATAGAAGCAAGAAAC+TGG | 0.429204 | 3_2:-72779985 | None:intergenic |
| CTCCAAGGTAATAATAATAA+CGG | 0.464837 | 3_2:+72780485 | Msa0423100:CDS |
| AAGAAACTGGACACAGTAGA+AGG | 0.491502 | 3_2:-72779972 | None:intergenic |
| CAATGGCATTTCCAACTCAA+TGG | 0.495776 | 3_2:-72780524 | None:intergenic |
| AAAGAAATTACCACCTTCCA+TGG | 0.501489 | 3_2:-72780462 | None:intergenic |
| CACTGCCTCAACTTCATCCA+TGG | 0.509432 | 3_2:+72780445 | Msa0423100:CDS |
| AGGGAAAAGCCTACCCTTGG+AGG | 0.512819 | 3_2:-72780021 | None:intergenic |
| ATTTCTAAGGGTTGAAGAAG+TGG | 0.515036 | 3_2:-72780553 | None:intergenic |
| GGAGAGGGATAGTGTAGTGG+AGG | 0.517083 | 3_2:-72779615 | None:intergenic |
| CAAATTACAAGCCATTGAGT+TGG | 0.518087 | 3_2:+72780513 | Msa0423100:CDS |
| GGTAACAATTGTGTAGAGAA+AGG | 0.520211 | 3_2:-72779636 | None:intergenic |
| AAAGGAGAGGGATAGTGTAG+TGG | 0.532448 | 3_2:-72779618 | None:intergenic |
| GGTGGTAATTTCTTTCTCCA+AGG | 0.542564 | 3_2:+72780470 | Msa0423100:CDS |
| CACATTCTGCAATTCCTCCA+AGG | 0.543179 | 3_2:+72780007 | Msa0423100:CDS |
| AGATAGAGGGTGCAGAGTGT+TGG | 0.551815 | 3_2:-72779589 | None:intergenic |
| GAAGTTGAGGCAGTGTGACC+TGG | 0.560053 | 3_2:-72780437 | None:intergenic |
| AATTGTGTAGAGAAAGGAGA+GGG | 0.568206 | 3_2:-72779630 | None:intergenic |
| ACCTTCCATGGATGAAGTTG+AGG | 0.576895 | 3_2:-72780450 | None:intergenic |
| GCCTCAACTTCATCCATGGA+AGG | 0.583985 | 3_2:+72780449 | Msa0423100:CDS |
| ATATGAATTAAATGAAGCCA+TGG | 0.598193 | 3_2:-72779911 | None:intergenic |
| GTAGTGGAGGCTGAGATAGA+GGG | 0.606138 | 3_2:-72779602 | None:intergenic |
| TGATGACCATTAACAAGATG+AGG | 0.607087 | 3_2:-72779936 | None:intergenic |
| TTGAGTTGGAAATGCCATTG+TGG | 0.619909 | 3_2:+72780527 | Msa0423100:CDS |
| TGAAGAAGTGGCCACCACAA+TGG | 0.621299 | 3_2:-72780541 | None:intergenic |
| ACATTCTGCAATTCCTCCAA+GGG | 0.630675 | 3_2:+72780008 | Msa0423100:CDS |
| ACATGATAGATAGATATCCA+TGG | 0.649649 | 3_2:+72779894 | Msa0423100:exon |
| AGTGTTGGCAGAAAAGTGAA+AGG | 0.656008 | 3_2:-72779574 | None:intergenic |
| TCAACTTCATCCATGGAAGG+TGG | 0.660618 | 3_2:+72780452 | Msa0423100:CDS |
| CTTGGAGGAATTGCAGAATG+TGG | 0.672231 | 3_2:-72780006 | None:intergenic |
| AGTTGGAAATGCCATTGTGG+TGG | 0.687706 | 3_2:+72780530 | Msa0423100:CDS |
| CAATTGTGTAGAGAAAGGAG+AGG | 0.717317 | 3_2:-72779631 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTTTGAATTCACTATAAAAT+TGG | - | chr3_2:72780215-72780234 | None:intergenic | 20.0% |
| !! | AGTTAACAAACTTAATTAAC+TGG | - | chr3_2:72780290-72780309 | None:intergenic | 20.0% |
| !! | GTTTGAATTCACTATAAAAT+TGG | - | chr3_2:72780215-72780234 | None:intergenic | 20.0% |
| !! | AGTTAACAAACTTAATTAAC+TGG | - | chr3_2:72780290-72780309 | None:intergenic | 20.0% |
| !!! | GTTTTTTTCTAGTTATGTGT+TGG | - | chr3_2:72779664-72779683 | None:intergenic | 25.0% |
| !! | AATGACAAACTTTTCATTCT+TGG | + | chr3_2:72779708-72779727 | Msa0423100:five_prime_UTR | 25.0% |
| !!! | TTATTTTGTCACATTACAAC+TGG | + | chr3_2:72779779-72779798 | Msa0423100:five_prime_UTR | 25.0% |
| ! | ATATGAATTAAATGAAGCCA+TGG | - | chr3_2:72779914-72779933 | None:intergenic | 25.0% |
| ! | ATATAACCTCATCTTGTTAA+TGG | + | chr3_2:72779930-72779949 | Msa0423100:CDS | 25.0% |
| !!! | TAGTTGGTTTTAAAAGGAAT+CGG | + | chr3_2:72780091-72780110 | Msa0423100:intron | 25.0% |
| !! | ACAGTATATTACTGTGATTT+TGG | + | chr3_2:72780149-72780168 | Msa0423100:intron | 25.0% |
| ! | AATTCACTATAAAATTGGCT+CGG | - | chr3_2:72780210-72780229 | None:intergenic | 25.0% |
| ! | TATTATTTGAGGAGAAAAAC+AGG | + | chr3_2:72780324-72780343 | Msa0423100:intron | 25.0% |
| ! | CTCCAAGGTAATAATAATAA+CGG | + | chr3_2:72780485-72780504 | Msa0423100:CDS | 25.0% |
| ! | ATCCGTTATTATTATTACCT+TGG | - | chr3_2:72780490-72780509 | None:intergenic | 25.0% |
| !!! | GTTTTTTTCTAGTTATGTGT+TGG | - | chr3_2:72779664-72779683 | None:intergenic | 25.0% |
| !! | AATGACAAACTTTTCATTCT+TGG | + | chr3_2:72779708-72779727 | Msa0423100:five_prime_UTR | 25.0% |
| !!! | TTATTTTGTCACATTACAAC+TGG | + | chr3_2:72779779-72779798 | Msa0423100:five_prime_UTR | 25.0% |
| ! | ATATGAATTAAATGAAGCCA+TGG | - | chr3_2:72779914-72779933 | None:intergenic | 25.0% |
| ! | ATATAACCTCATCTTGTTAA+TGG | + | chr3_2:72779930-72779949 | Msa0423100:CDS | 25.0% |
| !!! | TAGTTGGTTTTAAAAGGAAT+CGG | + | chr3_2:72780091-72780110 | Msa0423100:intron | 25.0% |
| !! | ACAGTATATTACTGTGATTT+TGG | + | chr3_2:72780149-72780168 | Msa0423100:intron | 25.0% |
| ! | AATTCACTATAAAATTGGCT+CGG | - | chr3_2:72780210-72780229 | None:intergenic | 25.0% |
| ! | TATTATTTGAGGAGAAAAAC+AGG | + | chr3_2:72780324-72780343 | Msa0423100:intron | 25.0% |
| ! | CTCCAAGGTAATAATAATAA+CGG | + | chr3_2:72780485-72780504 | Msa0423100:CDS | 25.0% |
| ! | ATCCGTTATTATTATTACCT+TGG | - | chr3_2:72780490-72780509 | None:intergenic | 25.0% |
| !!! | ATCTAGTTTTGAGCAATGAA+TGG | - | chr3_2:72779686-72779705 | None:intergenic | 30.0% |
| ACATGATAGATAGATATCCA+TGG | + | chr3_2:72779894-72779913 | Msa0423100:exon | 30.0% | |
| TTATGTGTATGTTGCATAGT+TGG | + | chr3_2:72780075-72780094 | Msa0423100:intron | 30.0% | |
| !!! | GTTGCATAGTTGGTTTTAAA+AGG | + | chr3_2:72780085-72780104 | Msa0423100:intron | 30.0% |
| ACAGTAATATACTGTGATTC+TGG | - | chr3_2:72780144-72780163 | None:intergenic | 30.0% | |
| ! | ATCCTCATTTTGTTGAAACT+TGG | - | chr3_2:72780243-72780262 | None:intergenic | 30.0% |
| ACTTAATTAACTGGTGAGTT+TGG | - | chr3_2:72780281-72780300 | None:intergenic | 30.0% | |
| !! | AGTTTGTTAACTATGTGTGT+AGG | + | chr3_2:72780298-72780317 | Msa0423100:intron | 30.0% |
| ! | GTTTGTTAACTATGTGTGTA+GGG | + | chr3_2:72780299-72780318 | Msa0423100:intron | 30.0% |
| TGTGTAGGGTTTATTATTTG+AGG | + | chr3_2:72780313-72780332 | Msa0423100:intron | 30.0% | |
| !! | TTACATTTGTTGTGACATGT+AGG | - | chr3_2:72780365-72780384 | None:intergenic | 30.0% |
| !!! | ATCTAGTTTTGAGCAATGAA+TGG | - | chr3_2:72779686-72779705 | None:intergenic | 30.0% |
| ACATGATAGATAGATATCCA+TGG | + | chr3_2:72779894-72779913 | Msa0423100:exon | 30.0% | |
| TTATGTGTATGTTGCATAGT+TGG | + | chr3_2:72780075-72780094 | Msa0423100:intron | 30.0% | |
| !!! | GTTGCATAGTTGGTTTTAAA+AGG | + | chr3_2:72780085-72780104 | Msa0423100:intron | 30.0% |
| ACAGTAATATACTGTGATTC+TGG | - | chr3_2:72780144-72780163 | None:intergenic | 30.0% | |
| ! | ATCCTCATTTTGTTGAAACT+TGG | - | chr3_2:72780243-72780262 | None:intergenic | 30.0% |
| ACTTAATTAACTGGTGAGTT+TGG | - | chr3_2:72780281-72780300 | None:intergenic | 30.0% | |
| !! | AGTTTGTTAACTATGTGTGT+AGG | + | chr3_2:72780298-72780317 | Msa0423100:intron | 30.0% |
| ! | GTTTGTTAACTATGTGTGTA+GGG | + | chr3_2:72780299-72780318 | Msa0423100:intron | 30.0% |
| TGTGTAGGGTTTATTATTTG+AGG | + | chr3_2:72780313-72780332 | Msa0423100:intron | 30.0% | |
| !! | TTACATTTGTTGTGACATGT+AGG | - | chr3_2:72780365-72780384 | None:intergenic | 30.0% |
| AATTGTGTAGAGAAAGGAGA+GGG | - | chr3_2:72779633-72779652 | None:intergenic | 35.0% | |
| GGTAACAATTGTGTAGAGAA+AGG | - | chr3_2:72779639-72779658 | None:intergenic | 35.0% | |
| !!! | TTTTCTAGTTATGTGTTGGC+AGG | - | chr3_2:72779660-72779679 | None:intergenic | 35.0% |
| TGATGACCATTAACAAGATG+AGG | - | chr3_2:72779939-72779958 | None:intergenic | 35.0% | |
| AGTGAATGAGGGAGAATAAA+GGG | - | chr3_2:72780043-72780062 | None:intergenic | 35.0% | |
| GCAACATACACATAAAGCAA+AGG | - | chr3_2:72780070-72780089 | None:intergenic | 35.0% | |
| CACCAAGTTTCAACAAAATG+AGG | + | chr3_2:72780238-72780257 | Msa0423100:intron | 35.0% | |
| TTTGAGGAGAAAAACAGGTT+AGG | + | chr3_2:72780329-72780348 | Msa0423100:intron | 35.0% | |
| AAAGAAATTACCACCTTCCA+TGG | - | chr3_2:72780465-72780484 | None:intergenic | 35.0% | |
| CAAATTACAAGCCATTGAGT+TGG | + | chr3_2:72780513-72780532 | Msa0423100:CDS | 35.0% | |
| AATTGTGTAGAGAAAGGAGA+GGG | - | chr3_2:72779633-72779652 | None:intergenic | 35.0% | |
| GGTAACAATTGTGTAGAGAA+AGG | - | chr3_2:72779639-72779658 | None:intergenic | 35.0% | |
| !!! | TTTTCTAGTTATGTGTTGGC+AGG | - | chr3_2:72779660-72779679 | None:intergenic | 35.0% |
| TGATGACCATTAACAAGATG+AGG | - | chr3_2:72779939-72779958 | None:intergenic | 35.0% | |
| AGTGAATGAGGGAGAATAAA+GGG | - | chr3_2:72780043-72780062 | None:intergenic | 35.0% | |
| GCAACATACACATAAAGCAA+AGG | - | chr3_2:72780070-72780089 | None:intergenic | 35.0% | |
| CACCAAGTTTCAACAAAATG+AGG | + | chr3_2:72780238-72780257 | Msa0423100:intron | 35.0% | |
| TTTGAGGAGAAAAACAGGTT+AGG | + | chr3_2:72780329-72780348 | Msa0423100:intron | 35.0% | |
| AAAGAAATTACCACCTTCCA+TGG | - | chr3_2:72780465-72780484 | None:intergenic | 35.0% | |
| CAAATTACAAGCCATTGAGT+TGG | + | chr3_2:72780513-72780532 | Msa0423100:CDS | 35.0% | |
| CAATTGTGTAGAGAAAGGAG+AGG | - | chr3_2:72779634-72779653 | None:intergenic | 40.0% | |
| AAGAAACTGGACACAGTAGA+AGG | - | chr3_2:72779975-72779994 | None:intergenic | 40.0% | |
| !! | GGTTGATAGAAGCAAGAAAC+TGG | - | chr3_2:72779988-72780007 | None:intergenic | 40.0% |
| ACATTCTGCAATTCCTCCAA+GGG | + | chr3_2:72780008-72780027 | Msa0423100:CDS | 40.0% | |
| GAGTGAATGAGGGAGAATAA+AGG | - | chr3_2:72780044-72780063 | None:intergenic | 40.0% | |
| GCAAAGGAAAGAGTGAATGA+GGG | - | chr3_2:72780054-72780073 | None:intergenic | 40.0% | |
| AGCAAAGGAAAGAGTGAATG+AGG | - | chr3_2:72780055-72780074 | None:intergenic | 40.0% | |
| TGGTGAGTTTGGCAAAATCA+AGG | - | chr3_2:72780270-72780289 | None:intergenic | 40.0% | |
| !! | CATTTGTTGTGACATGTAGG+TGG | - | chr3_2:72780362-72780381 | None:intergenic | 40.0% |
| TAACCAATGTCATCCATGCA+TGG | + | chr3_2:72780382-72780401 | Msa0423100:intron | 40.0% | |
| GGTGGTAATTTCTTTCTCCA+AGG | + | chr3_2:72780470-72780489 | Msa0423100:CDS | 40.0% | |
| CAATGGCATTTCCAACTCAA+TGG | - | chr3_2:72780527-72780546 | None:intergenic | 40.0% | |
| !! | TTGAGTTGGAAATGCCATTG+TGG | + | chr3_2:72780527-72780546 | Msa0423100:CDS | 40.0% |
| CAATTGTGTAGAGAAAGGAG+AGG | - | chr3_2:72779634-72779653 | None:intergenic | 40.0% | |
| AAGAAACTGGACACAGTAGA+AGG | - | chr3_2:72779975-72779994 | None:intergenic | 40.0% | |
| !! | GGTTGATAGAAGCAAGAAAC+TGG | - | chr3_2:72779988-72780007 | None:intergenic | 40.0% |
| ACATTCTGCAATTCCTCCAA+GGG | + | chr3_2:72780008-72780027 | Msa0423100:CDS | 40.0% | |
| GAGTGAATGAGGGAGAATAA+AGG | - | chr3_2:72780044-72780063 | None:intergenic | 40.0% | |
| GCAAAGGAAAGAGTGAATGA+GGG | - | chr3_2:72780054-72780073 | None:intergenic | 40.0% | |
| AGCAAAGGAAAGAGTGAATG+AGG | - | chr3_2:72780055-72780074 | None:intergenic | 40.0% | |
| TGGTGAGTTTGGCAAAATCA+AGG | - | chr3_2:72780270-72780289 | None:intergenic | 40.0% | |
| !! | CATTTGTTGTGACATGTAGG+TGG | - | chr3_2:72780362-72780381 | None:intergenic | 40.0% |
| TAACCAATGTCATCCATGCA+TGG | + | chr3_2:72780382-72780401 | Msa0423100:intron | 40.0% | |
| GGTGGTAATTTCTTTCTCCA+AGG | + | chr3_2:72780470-72780489 | Msa0423100:CDS | 40.0% | |
| CAATGGCATTTCCAACTCAA+TGG | - | chr3_2:72780527-72780546 | None:intergenic | 40.0% | |
| !! | TTGAGTTGGAAATGCCATTG+TGG | + | chr3_2:72780527-72780546 | Msa0423100:CDS | 40.0% |
| AAAGGAGAGGGATAGTGTAG+TGG | - | chr3_2:72779621-72779640 | None:intergenic | 45.0% | |
| CTTGGAGGAATTGCAGAATG+TGG | - | chr3_2:72780009-72780028 | None:intergenic | 45.0% | |
| CACATTCTGCAATTCCTCCA+AGG | + | chr3_2:72780007-72780026 | Msa0423100:CDS | 45.0% | |
| TAAAGGGAAAAGCCTACCCT+TGG | - | chr3_2:72780027-72780046 | None:intergenic | 45.0% | |
| GGAATCGGTGCATGTTTGAA+TGG | + | chr3_2:72780106-72780125 | Msa0423100:intron | 45.0% | |
| TCGGTGCATGTTTGAATGGA+CGG | + | chr3_2:72780110-72780129 | Msa0423100:intron | 45.0% | |
| GCTCGGAGCTTCAACAAAAT+CGG | - | chr3_2:72780193-72780212 | None:intergenic | 45.0% | |
| ACCTTCCATGGATGAAGTTG+AGG | - | chr3_2:72780453-72780472 | None:intergenic | 45.0% | |
| TCAACTTCATCCATGGAAGG+TGG | + | chr3_2:72780452-72780471 | Msa0423100:CDS | 45.0% | |
| AGTTGGAAATGCCATTGTGG+TGG | + | chr3_2:72780530-72780549 | Msa0423100:CDS | 45.0% | |
| AAAGGAGAGGGATAGTGTAG+TGG | - | chr3_2:72779621-72779640 | None:intergenic | 45.0% | |
| CTTGGAGGAATTGCAGAATG+TGG | - | chr3_2:72780009-72780028 | None:intergenic | 45.0% | |
| CACATTCTGCAATTCCTCCA+AGG | + | chr3_2:72780007-72780026 | Msa0423100:CDS | 45.0% | |
| TAAAGGGAAAAGCCTACCCT+TGG | - | chr3_2:72780027-72780046 | None:intergenic | 45.0% | |
| GGAATCGGTGCATGTTTGAA+TGG | + | chr3_2:72780106-72780125 | Msa0423100:intron | 45.0% | |
| TCGGTGCATGTTTGAATGGA+CGG | + | chr3_2:72780110-72780129 | Msa0423100:intron | 45.0% | |
| GCTCGGAGCTTCAACAAAAT+CGG | - | chr3_2:72780193-72780212 | None:intergenic | 45.0% | |
| ACCTTCCATGGATGAAGTTG+AGG | - | chr3_2:72780453-72780472 | None:intergenic | 45.0% | |
| TCAACTTCATCCATGGAAGG+TGG | + | chr3_2:72780452-72780471 | Msa0423100:CDS | 45.0% | |
| AGTTGGAAATGCCATTGTGG+TGG | + | chr3_2:72780530-72780549 | Msa0423100:CDS | 45.0% | |
| ! | AGATAGAGGGTGCAGAGTGT+TGG | - | chr3_2:72779592-72779611 | None:intergenic | 50.0% |
| ! | GTAGTGGAGGCTGAGATAGA+GGG | - | chr3_2:72779605-72779624 | None:intergenic | 50.0% |
| ! | TGTAGTGGAGGCTGAGATAG+AGG | - | chr3_2:72779606-72779625 | None:intergenic | 50.0% |
| TCTGCAATTCCTCCAAGGGT+AGG | + | chr3_2:72780012-72780031 | Msa0423100:intron | 50.0% | |
| CTGCCATGCATGGATGACAT+TGG | - | chr3_2:72780388-72780407 | None:intergenic | 50.0% | |
| GGCTGAACATGTTCATGGCT+TGG | - | chr3_2:72780419-72780438 | None:intergenic | 50.0% | |
| AGCCATGAACATGTTCAGCC+AGG | + | chr3_2:72780419-72780438 | Msa0423100:intron | 50.0% | |
| GACCTGGCTGAACATGTTCA+TGG | - | chr3_2:72780424-72780443 | None:intergenic | 50.0% | |
| CACTGCCTCAACTTCATCCA+TGG | + | chr3_2:72780445-72780464 | Msa0423100:CDS | 50.0% | |
| GCCTCAACTTCATCCATGGA+AGG | + | chr3_2:72780449-72780468 | Msa0423100:CDS | 50.0% | |
| TGAAGAAGTGGCCACCACAA+TGG | - | chr3_2:72780544-72780563 | None:intergenic | 50.0% | |
| ! | AGATAGAGGGTGCAGAGTGT+TGG | - | chr3_2:72779592-72779611 | None:intergenic | 50.0% |
| ! | GTAGTGGAGGCTGAGATAGA+GGG | - | chr3_2:72779605-72779624 | None:intergenic | 50.0% |
| ! | TGTAGTGGAGGCTGAGATAG+AGG | - | chr3_2:72779606-72779625 | None:intergenic | 50.0% |
| TCTGCAATTCCTCCAAGGGT+AGG | + | chr3_2:72780012-72780031 | Msa0423100:intron | 50.0% | |
| CTGCCATGCATGGATGACAT+TGG | - | chr3_2:72780388-72780407 | None:intergenic | 50.0% | |
| GGCTGAACATGTTCATGGCT+TGG | - | chr3_2:72780419-72780438 | None:intergenic | 50.0% | |
| AGCCATGAACATGTTCAGCC+AGG | + | chr3_2:72780419-72780438 | Msa0423100:intron | 50.0% | |
| GACCTGGCTGAACATGTTCA+TGG | - | chr3_2:72780424-72780443 | None:intergenic | 50.0% | |
| CACTGCCTCAACTTCATCCA+TGG | + | chr3_2:72780445-72780464 | Msa0423100:CDS | 50.0% | |
| GCCTCAACTTCATCCATGGA+AGG | + | chr3_2:72780449-72780468 | Msa0423100:CDS | 50.0% | |
| TGAAGAAGTGGCCACCACAA+TGG | - | chr3_2:72780544-72780563 | None:intergenic | 50.0% | |
| GGAGAGGGATAGTGTAGTGG+AGG | - | chr3_2:72779618-72779637 | None:intergenic | 55.0% | |
| AGGGAAAAGCCTACCCTTGG+AGG | - | chr3_2:72780024-72780043 | None:intergenic | 55.0% | |
| GGAACTTGCACTGCCATGCA+TGG | - | chr3_2:72780398-72780417 | None:intergenic | 55.0% | |
| GAAGTTGAGGCAGTGTGACC+TGG | - | chr3_2:72780440-72780459 | None:intergenic | 55.0% | |
| GGAGAGGGATAGTGTAGTGG+AGG | - | chr3_2:72779618-72779637 | None:intergenic | 55.0% | |
| AGGGAAAAGCCTACCCTTGG+AGG | - | chr3_2:72780024-72780043 | None:intergenic | 55.0% | |
| GGAACTTGCACTGCCATGCA+TGG | - | chr3_2:72780398-72780417 | None:intergenic | 55.0% | |
| GAAGTTGAGGCAGTGTGACC+TGG | - | chr3_2:72780440-72780459 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 72779576 | 72780571 | 72779576 | ID=Msa0423100;Name=Msa0423100 |
| chr3_2 | mRNA | 72779576 | 72780571 | 72779576 | ID=Msa0423100-mRNA-1;Parent=Msa0423100;Name=Msa0423100-mRNA-1;_AED=0.16;_eAED=0.17;_QI=337|0|0.5|1|0|0|2|0|83 |
| chr3_2 | exon | 72779576 | 72780029 | 72779576 | ID=Msa0423100-mRNA-1:exon:18030;Parent=Msa0423100-mRNA-1 |
| chr3_2 | exon | 72780437 | 72780571 | 72780437 | ID=Msa0423100-mRNA-1:exon:18031;Parent=Msa0423100-mRNA-1 |
| chr3_2 | five_prime_UTR | 72779576 | 72779912 | 72779576 | ID=Msa0423100-mRNA-1:five_prime_utr;Parent=Msa0423100-mRNA-1 |
| chr3_2 | CDS | 72779913 | 72780029 | 72779913 | ID=Msa0423100-mRNA-1:cds;Parent=Msa0423100-mRNA-1 |
| chr3_2 | CDS | 72780437 | 72780571 | 72780437 | ID=Msa0423100-mRNA-1:cds;Parent=Msa0423100-mRNA-1 |
| Gene Sequence |
| Protein sequence |
