AlfalfaGEDB | Msa1458910

M. sativa cultivar zhongmu-4 / Msa1458910

KEGG: -
GO: GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009987 GO:0010016 GO:0010052 GO:0010103 GO:0010374 GO:0030154 GO:0032501 GO:0032502 GO:0048367 GO:0048731 GO:0048856 GO:0048869 GO:0090558 GO:0090626 GO:0090627 GO:0090698
PFAM: PF17181.7

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1458910	AES72186.1	60.656	122	8	2	1	83	1	121	4.00e-35	125

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1458910	G7J3Q1	60.656	122	8	2	1	83	1	121	1.91e-35	125

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0015710	Msa1458910	0.811857	5.676974e-51	-8.615850e-47
Msa0062440	Msa1458910	0.800839	1.193794e-48	-8.615850e-47
Msa0104500	Msa1458910	0.817677	2.913483e-52	-8.615850e-47
Msa0124130	Msa1458910	0.809987	1.442006e-50	-8.615850e-47
Msa0176470	Msa1458910	0.826307	2.914302e-54	-8.615850e-47
Msa0191040	Msa1458910	0.804302	2.305848e-49	-8.615850e-47
Msa0194380	Msa1458910	0.851984	6.216542e-61	-8.615850e-47
Msa0203030	Msa1458910	0.809220	2.107139e-50	-8.615850e-47
Msa0206800	Msa1458910	0.849553	3.003743e-60	-8.615850e-47
Msa0212150	Msa1458910	0.800362	1.493252e-48	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1458910	MtrunA17_Chr3g0123851	60.656	122	8	2	1	83	1	121	3.68e-39	125

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 34 sgRNAs with CRISPR-Local

Find 144 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAAATTACCACCTTCCA+TGG	0.501489	tig0039907:-16539	None:intergenic
AAAGGAGAGGGATAGTGTAG+TGG	0.532448	tig0039907:-15695	None:intergenic
AAGAAACTGGACACAGTAGA+AGG	0.491502	tig0039907:-16049	None:intergenic
AATTGTGTAGAGAAAGGAGA+GGG	0.568206	tig0039907:-15707	None:intergenic
ACATGATAGATAGATATCCA+TGG	0.649649	tig0039907:+15971	Msa1458910:exon
ACATTCTGCAATTCCTCCAA+GGG	0.630675	tig0039907:+16085	Msa1458910:CDS
ACCTTCCATGGATGAAGTTG+AGG	0.576895	tig0039907:-16527	None:intergenic
AGATAGAGGGTGCAGAGTGT+TGG	0.551815	tig0039907:-15666	None:intergenic
AGGGAAAAGCCTACCCTTGG+AGG	0.512819	tig0039907:-16098	None:intergenic
AGTGTTGGCAGAAAAGTGAA+AGG	0.656008	tig0039907:-15651	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACATGATAGATAGATATCCA+TGG	+	tig0039907:15971-15990	Msa1458910:exon	30.0%
TTATGTGTATGTTGCATAGT+TGG	+	tig0039907:16152-16171	Msa1458910:intron	30.0%
ACAGTAATATACTGTGATTC+TGG	-	tig0039907:16221-16240	None:intergenic	30.0%
ACTTAATTAACTGGTGAGTT+TGG	-	tig0039907:16358-16377	None:intergenic	30.0%
TGTGTAGGGTTTATTATTTG+AGG	+	tig0039907:16390-16409	Msa1458910:intron	30.0%
ACATGATAGATAGATATCCA+TGG	+	tig0039907:15971-15990	Msa1458910:exon	30.0%
TTATGTGTATGTTGCATAGT+TGG	+	tig0039907:16152-16171	Msa1458910:intron	30.0%
ACAGTAATATACTGTGATTC+TGG	-	tig0039907:16221-16240	None:intergenic	30.0%
ACTTAATTAACTGGTGAGTT+TGG	-	tig0039907:16358-16377	None:intergenic	30.0%
TGTGTAGGGTTTATTATTTG+AGG	+	tig0039907:16390-16409	Msa1458910:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0039907	gene	15653	16648	15653	ID=Msa1458910;Name=Msa1458910
tig0039907	mRNA	15653	16648	15653	ID=Msa1458910-mRNA-1;Parent=Msa1458910;Name=Msa1458910-mRNA-1;_AED=0.16;_eAED=0.17;_QI=337\|0\|0.5\|1\|0\|0\|2\|0\|83
tig0039907	exon	15653	16106	15653	ID=Msa1458910-mRNA-1:exon:21999;Parent=Msa1458910-mRNA-1
tig0039907	exon	16514	16648	16514	ID=Msa1458910-mRNA-1:exon:22000;Parent=Msa1458910-mRNA-1
tig0039907	five_prime_UTR	15653	15989	15653	ID=Msa1458910-mRNA-1:five_prime_utr;Parent=Msa1458910-mRNA-1
tig0039907	CDS	15990	16106	15990	ID=Msa1458910-mRNA-1:cds;Parent=Msa1458910-mRNA-1
tig0039907	CDS	16514	16648	16514	ID=Msa1458910-mRNA-1:cds;Parent=Msa1458910-mRNA-1

Gene Sequence	>Msa1458910 ATGGCTTCATTTAATTCATATAACCTCATCTTGTTAATGGTCATCATATTTATACTTCACCTTCTACTGTGTCCAGTTTCTTGCTTCTATCAACCACATTCTGCAATTCCTCCAAGGCCAGGTCACACTGCCTCAACTTCATCCATGGAAGGTGGTAATTTCTTTCTCCAAGGTAATAATAATAACGGATACTCAAATTACAAGCCATTGAGTTGGAAATGCCATTGTGGTGGCCACTTCTTCAACCCTTAG
Protein sequence	>Msa1458910 MASFNSYNLILLMVIIFILHLLLCPVSCFYQPHSAIPPRPGHTASTSSMEGGNFFLQGNNNNGYSNYKPLSWKCHCGGHFFNP*