Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1458910 | AES72186.1 | 60.656 | 122 | 8 | 2 | 1 | 83 | 1 | 121 | 4.00e-35 | 125 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1458910 | G7J3Q1 | 60.656 | 122 | 8 | 2 | 1 | 83 | 1 | 121 | 1.91e-35 | 125 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015710 | Msa1458910 | 0.811857 | 5.676974e-51 | -8.615850e-47 |
| Msa0062440 | Msa1458910 | 0.800839 | 1.193794e-48 | -8.615850e-47 |
| Msa0104500 | Msa1458910 | 0.817677 | 2.913483e-52 | -8.615850e-47 |
| Msa1345420 | Msa1458910 | 0.841763 | 3.901706e-58 | -8.615850e-47 |
| Msa1389050 | Msa1458910 | 0.848570 | 5.633111e-60 | -8.615850e-47 |
| Msa1420060 | Msa1458910 | 0.815519 | 8.867616e-52 | -8.615850e-47 |
| Msa1421550 | Msa1458910 | 0.803080 | 4.133736e-49 | -8.615850e-47 |
| Msa1431850 | Msa1458910 | 0.803354 | 3.628489e-49 | -8.615850e-47 |
| Msa1435480 | Msa1458910 | 0.947813 | 3.234948e-106 | -8.615850e-47 |
| Msa1442630 | Msa1458910 | 0.803033 | 4.229021e-49 | -8.615850e-47 |
| Msa1458910 | Msa1462530 | 0.814509 | 1.485636e-51 | -8.615850e-47 |
| Msa0639460 | Msa1458910 | 0.801877 | 7.317584e-49 | -8.615850e-47 |
| Msa0667850 | Msa1458910 | 0.842393 | 2.657949e-58 | -8.615850e-47 |
| Msa0669840 | Msa1458910 | 0.828520 | 8.587516e-55 | -8.615850e-47 |
| Msa0725860 | Msa1458910 | 0.828045 | 1.118023e-54 | -8.615850e-47 |
| Msa0742180 | Msa1458910 | 0.833341 | 5.639044e-56 | -8.615850e-47 |
| Msa0786040 | Msa1458910 | 0.803589 | 3.244086e-49 | -8.615850e-47 |
| Msa0823400 | Msa1458910 | 0.829906 | 3.959611e-55 | -8.615850e-47 |
| Msa0124130 | Msa1458910 | 0.809987 | 1.442006e-50 | -8.615850e-47 |
| Msa0176470 | Msa1458910 | 0.826307 | 2.914302e-54 | -8.615850e-47 |
| Msa0191040 | Msa1458910 | 0.804302 | 2.305848e-49 | -8.615850e-47 |
| Msa0194380 | Msa1458910 | 0.851984 | 6.216542e-61 | -8.615850e-47 |
| Msa0203030 | Msa1458910 | 0.809220 | 2.107139e-50 | -8.615850e-47 |
| Msa0206800 | Msa1458910 | 0.849553 | 3.003743e-60 | -8.615850e-47 |
| Msa0212150 | Msa1458910 | 0.800362 | 1.493252e-48 | -8.615850e-47 |
| Msa0219190 | Msa1458910 | 0.811147 | 8.094970e-51 | -8.615850e-47 |
| Msa0233340 | Msa1458910 | 0.803511 | 3.367259e-49 | -8.615850e-47 |
| Msa0236110 | Msa1458910 | 0.817331 | 3.486461e-52 | -8.615850e-47 |
| Msa1228190 | Msa1458910 | 0.870095 | 1.890604e-66 | -8.615850e-47 |
| Msa1271260 | Msa1458910 | 0.895672 | 7.673025e-76 | -8.615850e-47 |
| Msa1294290 | Msa1458910 | 0.816781 | 4.634075e-52 | -8.615850e-47 |
| Msa1317170 | Msa1458910 | 0.812205 | 4.766069e-51 | -8.615850e-47 |
| Msa1339440 | Msa1458910 | 0.807022 | 6.190781e-50 | -8.615850e-47 |
| Msa0373960 | Msa1458910 | 0.916595 | 1.474176e-85 | -8.615850e-47 |
| Msa0406000 | Msa1458910 | 0.823740 | 1.177089e-53 | -8.615850e-47 |
| Msa0423100 | Msa1458910 | 0.955770 | 1.408576e-113 | -8.615850e-47 |
| Msa0424340 | Msa1458910 | 0.809191 | 2.137370e-50 | -8.615850e-47 |
| Msa0441590 | Msa1458910 | 0.812217 | 4.738075e-51 | -8.615850e-47 |
| Msa0451400 | Msa1458910 | 0.835776 | 1.378211e-56 | -8.615850e-47 |
| Msa0469260 | Msa1458910 | 0.916478 | 1.697518e-85 | -8.615850e-47 |
| Msa0996270 | Msa1458910 | 0.808972 | 2.381523e-50 | -8.615850e-47 |
| Msa0999300 | Msa1458910 | 0.804430 | 2.168881e-49 | -8.615850e-47 |
| Msa0999340 | Msa1458910 | 0.877524 | 5.866365e-69 | -8.615850e-47 |
| Msa0999350 | Msa1458910 | 0.875236 | 3.612751e-68 | -8.615850e-47 |
| Msa0999360 | Msa1458910 | 0.834258 | 3.324782e-56 | -8.615850e-47 |
| Msa0999390 | Msa1458910 | 0.870645 | 1.248267e-66 | -8.615850e-47 |
| Msa0999400 | Msa1458910 | 0.866524 | 2.677880e-65 | -8.615850e-47 |
| Msa0999410 | Msa1458910 | 0.837404 | 5.302204e-57 | -8.615850e-47 |
| Msa0999700 | Msa1458910 | 0.835963 | 1.235801e-56 | -8.615850e-47 |
| Msa1033560 | Msa1458910 | 0.803673 | 3.115276e-49 | -8.615850e-47 |
| Msa1034680 | Msa1458910 | 0.828539 | 8.501010e-55 | -8.615850e-47 |
| Msa1073340 | Msa1458910 | 0.841992 | 3.393907e-58 | -8.615850e-47 |
| Msa1079930 | Msa1458910 | 0.806040 | 9.978358e-50 | -8.615850e-47 |
| Msa1092020 | Msa1458910 | 0.813726 | 2.211789e-51 | -8.615850e-47 |
| Msa0252630 | Msa1458910 | 0.801511 | 8.697649e-49 | -8.615850e-47 |
| Msa0252770 | Msa1458910 | 0.809031 | 2.312982e-50 | -8.615850e-47 |
| Msa0277290 | Msa1458910 | 0.835517 | 1.602103e-56 | -8.615850e-47 |
| Msa0280750 | Msa1458910 | 0.807988 | 3.862107e-50 | -8.615850e-47 |
| Msa0288190 | Msa1458910 | 0.832772 | 7.813132e-56 | -8.615850e-47 |
| Msa0288200 | Msa1458910 | 0.817198 | 3.734528e-52 | -8.615850e-47 |
| Msa0291330 | Msa1458910 | 0.805966 | 1.034288e-49 | -8.615850e-47 |
| Msa0298240 | Msa1458910 | 0.815953 | 7.096102e-52 | -8.615850e-47 |
| Msa0306120 | Msa1458910 | 0.809490 | 1.844059e-50 | -8.615850e-47 |
| Msa0314630 | Msa1458910 | 0.819573 | 1.081958e-52 | -8.615850e-47 |
| Msa0322830 | Msa1458910 | 0.807675 | 4.502235e-50 | -8.615850e-47 |
| Msa0322840 | Msa1458910 | 0.830418 | 2.969419e-55 | -8.615850e-47 |
| Msa0322860 | Msa1458910 | 0.841188 | 5.527755e-58 | -8.615850e-47 |
| Msa0326540 | Msa1458910 | 0.815494 | 8.984569e-52 | -8.615850e-47 |
| Msa0329620 | Msa1458910 | 0.825557 | 4.392471e-54 | -8.615850e-47 |
| Msa0351770 | Msa1458910 | 0.807667 | 4.518657e-50 | -8.615850e-47 |
| Msa0359250 | Msa1458910 | 0.816612 | 5.054427e-52 | -8.615850e-47 |
| Msa1113850 | Msa1458910 | 0.816780 | 4.636545e-52 | -8.615850e-47 |
| Msa1125810 | Msa1458910 | 0.800787 | 1.223561e-48 | -8.615850e-47 |
| Msa1135380 | Msa1458910 | 0.805899 | 1.068062e-49 | -8.615850e-47 |
| Msa1145020 | Msa1458910 | 0.840587 | 7.948289e-58 | -8.615850e-47 |
| Msa1179360 | Msa1458910 | 0.826591 | 2.493876e-54 | -8.615850e-47 |
| Msa1179520 | Msa1458910 | 0.836636 | 8.332243e-57 | -8.615850e-47 |
| Msa1183430 | Msa1458910 | 0.816306 | 5.918854e-52 | -8.615850e-47 |
| Msa1201110 | Msa1458910 | 0.800256 | 1.569440e-48 | -8.615850e-47 |
| Msa1201160 | Msa1458910 | 0.828831 | 7.223756e-55 | -8.615850e-47 |
| Msa0492190 | Msa1458910 | 0.809815 | 1.570219e-50 | -8.615850e-47 |
| Msa0514980 | Msa1458910 | 0.808166 | 3.539223e-50 | -8.615850e-47 |
| Msa0520510 | Msa1458910 | 0.849361 | 3.398226e-60 | -8.615850e-47 |
| Msa0575740 | Msa1458910 | 0.854020 | 1.625506e-61 | -8.615850e-47 |
| Msa0591790 | Msa1458910 | 0.826068 | 3.322501e-54 | -8.615850e-47 |
| Msa0591800 | Msa1458910 | 0.861425 | 1.035238e-63 | -8.615850e-47 |
| Msa0845940 | Msa1458910 | 0.800028 | 1.746290e-48 | -8.615850e-47 |
| Msa0860170 | Msa1458910 | 0.812008 | 5.263019e-51 | -8.615850e-47 |
| Msa0862310 | Msa1458910 | 0.827892 | 1.217016e-54 | -8.615850e-47 |
| Msa0885060 | Msa1458910 | 0.813524 | 2.450359e-51 | -8.615850e-47 |
| Msa0899950 | Msa1458910 | 0.839798 | 1.277077e-57 | -8.615850e-47 |
| Msa0927120 | Msa1458910 | 0.810583 | 1.072427e-50 | -8.615850e-47 |
| Msa0929870 | Msa1458910 | 0.815971 | 7.032430e-52 | -8.615850e-47 |
| Msa0965310 | Msa1458910 | 0.853459 | 2.356636e-61 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1458910 | MtrunA17_Chr3g0123851 | 60.656 | 122 | 8 | 2 | 1 | 83 | 1 | 121 | 3.68e-39 | 125 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 34 sgRNAs with CRISPR-Local
Find 144 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATATAACCTCATCTTGTTAA+TGG | 0.240049 | tig0039907:+16007 | Msa1458910:CDS |
| TGTAGTGGAGGCTGAGATAG+AGG | 0.383685 | tig0039907:-15680 | None:intergenic |
| ATCCGTTATTATTATTACCT+TGG | 0.417680 | tig0039907:-16564 | None:intergenic |
| GGTTGATAGAAGCAAGAAAC+TGG | 0.429204 | tig0039907:-16062 | None:intergenic |
| CTCCAAGGTAATAATAATAA+CGG | 0.464837 | tig0039907:+16562 | Msa1458910:CDS |
| AAGAAACTGGACACAGTAGA+AGG | 0.491502 | tig0039907:-16049 | None:intergenic |
| CAATGGCATTTCCAACTCAA+TGG | 0.495776 | tig0039907:-16601 | None:intergenic |
| AAAGAAATTACCACCTTCCA+TGG | 0.501489 | tig0039907:-16539 | None:intergenic |
| CACTGCCTCAACTTCATCCA+TGG | 0.509432 | tig0039907:+16522 | Msa1458910:CDS |
| AGGGAAAAGCCTACCCTTGG+AGG | 0.512819 | tig0039907:-16098 | None:intergenic |
| ATTTCTAAGGGTTGAAGAAG+TGG | 0.515036 | tig0039907:-16630 | None:intergenic |
| GGAGAGGGATAGTGTAGTGG+AGG | 0.517083 | tig0039907:-15692 | None:intergenic |
| CAAATTACAAGCCATTGAGT+TGG | 0.518087 | tig0039907:+16590 | Msa1458910:CDS |
| GGTAACAATTGTGTAGAGAA+AGG | 0.520211 | tig0039907:-15713 | None:intergenic |
| AAAGGAGAGGGATAGTGTAG+TGG | 0.532448 | tig0039907:-15695 | None:intergenic |
| GGTGGTAATTTCTTTCTCCA+AGG | 0.542564 | tig0039907:+16547 | Msa1458910:CDS |
| CACATTCTGCAATTCCTCCA+AGG | 0.543179 | tig0039907:+16084 | Msa1458910:CDS |
| AGATAGAGGGTGCAGAGTGT+TGG | 0.551815 | tig0039907:-15666 | None:intergenic |
| GAAGTTGAGGCAGTGTGACC+TGG | 0.560053 | tig0039907:-16514 | None:intergenic |
| AATTGTGTAGAGAAAGGAGA+GGG | 0.568206 | tig0039907:-15707 | None:intergenic |
| ACCTTCCATGGATGAAGTTG+AGG | 0.576895 | tig0039907:-16527 | None:intergenic |
| GCCTCAACTTCATCCATGGA+AGG | 0.583985 | tig0039907:+16526 | Msa1458910:CDS |
| ATATGAATTAAATGAAGCCA+TGG | 0.598193 | tig0039907:-15988 | None:intergenic |
| GTAGTGGAGGCTGAGATAGA+GGG | 0.606138 | tig0039907:-15679 | None:intergenic |
| TGATGACCATTAACAAGATG+AGG | 0.607087 | tig0039907:-16013 | None:intergenic |
| TTGAGTTGGAAATGCCATTG+TGG | 0.619909 | tig0039907:+16604 | Msa1458910:CDS |
| TGAAGAAGTGGCCACCACAA+TGG | 0.621299 | tig0039907:-16618 | None:intergenic |
| ACATTCTGCAATTCCTCCAA+GGG | 0.630675 | tig0039907:+16085 | Msa1458910:CDS |
| ACATGATAGATAGATATCCA+TGG | 0.649649 | tig0039907:+15971 | Msa1458910:exon |
| AGTGTTGGCAGAAAAGTGAA+AGG | 0.656008 | tig0039907:-15651 | None:intergenic |
| TCAACTTCATCCATGGAAGG+TGG | 0.660618 | tig0039907:+16529 | Msa1458910:CDS |
| CTTGGAGGAATTGCAGAATG+TGG | 0.672231 | tig0039907:-16083 | None:intergenic |
| AGTTGGAAATGCCATTGTGG+TGG | 0.687706 | tig0039907:+16607 | Msa1458910:CDS |
| CAATTGTGTAGAGAAAGGAG+AGG | 0.717317 | tig0039907:-15708 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTTTGAATTCACTATAAAAT+TGG | - | tig0039907:16292-16311 | None:intergenic | 20.0% |
| !! | AGTTAACAAACTTAATTAAC+TGG | - | tig0039907:16367-16386 | None:intergenic | 20.0% |
| !! | GTTTGAATTCACTATAAAAT+TGG | - | tig0039907:16292-16311 | None:intergenic | 20.0% |
| !! | AGTTAACAAACTTAATTAAC+TGG | - | tig0039907:16367-16386 | None:intergenic | 20.0% |
| !!! | GTTTTTTTCTAGTTATGTGT+TGG | - | tig0039907:15741-15760 | None:intergenic | 25.0% |
| !! | AATGACAAACTTTTCATTCT+TGG | + | tig0039907:15785-15804 | Msa1458910:five_prime_UTR | 25.0% |
| !!! | TTATTTTGTCACATTACAAC+TGG | + | tig0039907:15856-15875 | Msa1458910:five_prime_UTR | 25.0% |
| ! | ATATGAATTAAATGAAGCCA+TGG | - | tig0039907:15991-16010 | None:intergenic | 25.0% |
| ! | ATATAACCTCATCTTGTTAA+TGG | + | tig0039907:16007-16026 | Msa1458910:CDS | 25.0% |
| !!! | TAGTTGGTTTTAAAAGGAAT+CGG | + | tig0039907:16168-16187 | Msa1458910:intron | 25.0% |
| !! | ACAGTATATTACTGTGATTT+TGG | + | tig0039907:16226-16245 | Msa1458910:intron | 25.0% |
| ! | AATTCACTATAAAATTGGCT+CGG | - | tig0039907:16287-16306 | None:intergenic | 25.0% |
| ! | TATTATTTGAGGAGAAAAAC+AGG | + | tig0039907:16401-16420 | Msa1458910:intron | 25.0% |
| ! | CTCCAAGGTAATAATAATAA+CGG | + | tig0039907:16562-16581 | Msa1458910:CDS | 25.0% |
| ! | ATCCGTTATTATTATTACCT+TGG | - | tig0039907:16567-16586 | None:intergenic | 25.0% |
| !!! | GTTTTTTTCTAGTTATGTGT+TGG | - | tig0039907:15741-15760 | None:intergenic | 25.0% |
| !! | AATGACAAACTTTTCATTCT+TGG | + | tig0039907:15785-15804 | Msa1458910:five_prime_UTR | 25.0% |
| !!! | TTATTTTGTCACATTACAAC+TGG | + | tig0039907:15856-15875 | Msa1458910:five_prime_UTR | 25.0% |
| ! | ATATGAATTAAATGAAGCCA+TGG | - | tig0039907:15991-16010 | None:intergenic | 25.0% |
| ! | ATATAACCTCATCTTGTTAA+TGG | + | tig0039907:16007-16026 | Msa1458910:CDS | 25.0% |
| !!! | TAGTTGGTTTTAAAAGGAAT+CGG | + | tig0039907:16168-16187 | Msa1458910:intron | 25.0% |
| !! | ACAGTATATTACTGTGATTT+TGG | + | tig0039907:16226-16245 | Msa1458910:intron | 25.0% |
| ! | AATTCACTATAAAATTGGCT+CGG | - | tig0039907:16287-16306 | None:intergenic | 25.0% |
| ! | TATTATTTGAGGAGAAAAAC+AGG | + | tig0039907:16401-16420 | Msa1458910:intron | 25.0% |
| ! | CTCCAAGGTAATAATAATAA+CGG | + | tig0039907:16562-16581 | Msa1458910:CDS | 25.0% |
| ! | ATCCGTTATTATTATTACCT+TGG | - | tig0039907:16567-16586 | None:intergenic | 25.0% |
| !!! | ATCTAGTTTTGAGCAATGAA+TGG | - | tig0039907:15763-15782 | None:intergenic | 30.0% |
| ACATGATAGATAGATATCCA+TGG | + | tig0039907:15971-15990 | Msa1458910:exon | 30.0% | |
| TTATGTGTATGTTGCATAGT+TGG | + | tig0039907:16152-16171 | Msa1458910:intron | 30.0% | |
| !!! | GTTGCATAGTTGGTTTTAAA+AGG | + | tig0039907:16162-16181 | Msa1458910:intron | 30.0% |
| ACAGTAATATACTGTGATTC+TGG | - | tig0039907:16221-16240 | None:intergenic | 30.0% | |
| ! | ATCCTCATTTTGTTGAAACT+TGG | - | tig0039907:16320-16339 | None:intergenic | 30.0% |
| ACTTAATTAACTGGTGAGTT+TGG | - | tig0039907:16358-16377 | None:intergenic | 30.0% | |
| !! | AGTTTGTTAACTATGTGTGT+AGG | + | tig0039907:16375-16394 | Msa1458910:intron | 30.0% |
| ! | GTTTGTTAACTATGTGTGTA+GGG | + | tig0039907:16376-16395 | Msa1458910:intron | 30.0% |
| TGTGTAGGGTTTATTATTTG+AGG | + | tig0039907:16390-16409 | Msa1458910:intron | 30.0% | |
| !! | TTACATTTGTTGTGACATGT+AGG | - | tig0039907:16442-16461 | None:intergenic | 30.0% |
| !!! | ATCTAGTTTTGAGCAATGAA+TGG | - | tig0039907:15763-15782 | None:intergenic | 30.0% |
| ACATGATAGATAGATATCCA+TGG | + | tig0039907:15971-15990 | Msa1458910:exon | 30.0% | |
| TTATGTGTATGTTGCATAGT+TGG | + | tig0039907:16152-16171 | Msa1458910:intron | 30.0% | |
| !!! | GTTGCATAGTTGGTTTTAAA+AGG | + | tig0039907:16162-16181 | Msa1458910:intron | 30.0% |
| ACAGTAATATACTGTGATTC+TGG | - | tig0039907:16221-16240 | None:intergenic | 30.0% | |
| ! | ATCCTCATTTTGTTGAAACT+TGG | - | tig0039907:16320-16339 | None:intergenic | 30.0% |
| ACTTAATTAACTGGTGAGTT+TGG | - | tig0039907:16358-16377 | None:intergenic | 30.0% | |
| !! | AGTTTGTTAACTATGTGTGT+AGG | + | tig0039907:16375-16394 | Msa1458910:intron | 30.0% |
| ! | GTTTGTTAACTATGTGTGTA+GGG | + | tig0039907:16376-16395 | Msa1458910:intron | 30.0% |
| TGTGTAGGGTTTATTATTTG+AGG | + | tig0039907:16390-16409 | Msa1458910:intron | 30.0% | |
| !! | TTACATTTGTTGTGACATGT+AGG | - | tig0039907:16442-16461 | None:intergenic | 30.0% |
| AATTGTGTAGAGAAAGGAGA+GGG | - | tig0039907:15710-15729 | None:intergenic | 35.0% | |
| GGTAACAATTGTGTAGAGAA+AGG | - | tig0039907:15716-15735 | None:intergenic | 35.0% | |
| !!! | TTTTCTAGTTATGTGTTGGC+AGG | - | tig0039907:15737-15756 | None:intergenic | 35.0% |
| TGATGACCATTAACAAGATG+AGG | - | tig0039907:16016-16035 | None:intergenic | 35.0% | |
| AGTGAATGAGGGAGAATAAA+GGG | - | tig0039907:16120-16139 | None:intergenic | 35.0% | |
| GCAACATACACATAAAGCAA+AGG | - | tig0039907:16147-16166 | None:intergenic | 35.0% | |
| CACCAAGTTTCAACAAAATG+AGG | + | tig0039907:16315-16334 | Msa1458910:intron | 35.0% | |
| TTTGAGGAGAAAAACAGGTT+AGG | + | tig0039907:16406-16425 | Msa1458910:intron | 35.0% | |
| AAAGAAATTACCACCTTCCA+TGG | - | tig0039907:16542-16561 | None:intergenic | 35.0% | |
| CAAATTACAAGCCATTGAGT+TGG | + | tig0039907:16590-16609 | Msa1458910:CDS | 35.0% | |
| AATTGTGTAGAGAAAGGAGA+GGG | - | tig0039907:15710-15729 | None:intergenic | 35.0% | |
| GGTAACAATTGTGTAGAGAA+AGG | - | tig0039907:15716-15735 | None:intergenic | 35.0% | |
| !!! | TTTTCTAGTTATGTGTTGGC+AGG | - | tig0039907:15737-15756 | None:intergenic | 35.0% |
| TGATGACCATTAACAAGATG+AGG | - | tig0039907:16016-16035 | None:intergenic | 35.0% | |
| AGTGAATGAGGGAGAATAAA+GGG | - | tig0039907:16120-16139 | None:intergenic | 35.0% | |
| GCAACATACACATAAAGCAA+AGG | - | tig0039907:16147-16166 | None:intergenic | 35.0% | |
| CACCAAGTTTCAACAAAATG+AGG | + | tig0039907:16315-16334 | Msa1458910:intron | 35.0% | |
| TTTGAGGAGAAAAACAGGTT+AGG | + | tig0039907:16406-16425 | Msa1458910:intron | 35.0% | |
| AAAGAAATTACCACCTTCCA+TGG | - | tig0039907:16542-16561 | None:intergenic | 35.0% | |
| CAAATTACAAGCCATTGAGT+TGG | + | tig0039907:16590-16609 | Msa1458910:CDS | 35.0% | |
| CAATTGTGTAGAGAAAGGAG+AGG | - | tig0039907:15711-15730 | None:intergenic | 40.0% | |
| AAGAAACTGGACACAGTAGA+AGG | - | tig0039907:16052-16071 | None:intergenic | 40.0% | |
| !! | GGTTGATAGAAGCAAGAAAC+TGG | - | tig0039907:16065-16084 | None:intergenic | 40.0% |
| ACATTCTGCAATTCCTCCAA+GGG | + | tig0039907:16085-16104 | Msa1458910:CDS | 40.0% | |
| GAGTGAATGAGGGAGAATAA+AGG | - | tig0039907:16121-16140 | None:intergenic | 40.0% | |
| GCAAAGGAAAGAGTGAATGA+GGG | - | tig0039907:16131-16150 | None:intergenic | 40.0% | |
| AGCAAAGGAAAGAGTGAATG+AGG | - | tig0039907:16132-16151 | None:intergenic | 40.0% | |
| TGGTGAGTTTGGCAAAATCA+AGG | - | tig0039907:16347-16366 | None:intergenic | 40.0% | |
| !! | CATTTGTTGTGACATGTAGG+TGG | - | tig0039907:16439-16458 | None:intergenic | 40.0% |
| TAACCAATGTCATCCATGCA+TGG | + | tig0039907:16459-16478 | Msa1458910:intron | 40.0% | |
| GGTGGTAATTTCTTTCTCCA+AGG | + | tig0039907:16547-16566 | Msa1458910:CDS | 40.0% | |
| CAATGGCATTTCCAACTCAA+TGG | - | tig0039907:16604-16623 | None:intergenic | 40.0% | |
| !! | TTGAGTTGGAAATGCCATTG+TGG | + | tig0039907:16604-16623 | Msa1458910:CDS | 40.0% |
| CAATTGTGTAGAGAAAGGAG+AGG | - | tig0039907:15711-15730 | None:intergenic | 40.0% | |
| AAGAAACTGGACACAGTAGA+AGG | - | tig0039907:16052-16071 | None:intergenic | 40.0% | |
| !! | GGTTGATAGAAGCAAGAAAC+TGG | - | tig0039907:16065-16084 | None:intergenic | 40.0% |
| ACATTCTGCAATTCCTCCAA+GGG | + | tig0039907:16085-16104 | Msa1458910:CDS | 40.0% | |
| GAGTGAATGAGGGAGAATAA+AGG | - | tig0039907:16121-16140 | None:intergenic | 40.0% | |
| GCAAAGGAAAGAGTGAATGA+GGG | - | tig0039907:16131-16150 | None:intergenic | 40.0% | |
| AGCAAAGGAAAGAGTGAATG+AGG | - | tig0039907:16132-16151 | None:intergenic | 40.0% | |
| TGGTGAGTTTGGCAAAATCA+AGG | - | tig0039907:16347-16366 | None:intergenic | 40.0% | |
| !! | CATTTGTTGTGACATGTAGG+TGG | - | tig0039907:16439-16458 | None:intergenic | 40.0% |
| TAACCAATGTCATCCATGCA+TGG | + | tig0039907:16459-16478 | Msa1458910:intron | 40.0% | |
| GGTGGTAATTTCTTTCTCCA+AGG | + | tig0039907:16547-16566 | Msa1458910:CDS | 40.0% | |
| CAATGGCATTTCCAACTCAA+TGG | - | tig0039907:16604-16623 | None:intergenic | 40.0% | |
| !! | TTGAGTTGGAAATGCCATTG+TGG | + | tig0039907:16604-16623 | Msa1458910:CDS | 40.0% |
| AAAGGAGAGGGATAGTGTAG+TGG | - | tig0039907:15698-15717 | None:intergenic | 45.0% | |
| CTTGGAGGAATTGCAGAATG+TGG | - | tig0039907:16086-16105 | None:intergenic | 45.0% | |
| CACATTCTGCAATTCCTCCA+AGG | + | tig0039907:16084-16103 | Msa1458910:CDS | 45.0% | |
| TAAAGGGAAAAGCCTACCCT+TGG | - | tig0039907:16104-16123 | None:intergenic | 45.0% | |
| GGAATCGGTGCATGTTTGAA+TGG | + | tig0039907:16183-16202 | Msa1458910:intron | 45.0% | |
| TCGGTGCATGTTTGAATGGA+CGG | + | tig0039907:16187-16206 | Msa1458910:intron | 45.0% | |
| GCTCGGAGCTTCAACAAAAT+CGG | - | tig0039907:16270-16289 | None:intergenic | 45.0% | |
| ACCTTCCATGGATGAAGTTG+AGG | - | tig0039907:16530-16549 | None:intergenic | 45.0% | |
| TCAACTTCATCCATGGAAGG+TGG | + | tig0039907:16529-16548 | Msa1458910:CDS | 45.0% | |
| AGTTGGAAATGCCATTGTGG+TGG | + | tig0039907:16607-16626 | Msa1458910:CDS | 45.0% | |
| AAAGGAGAGGGATAGTGTAG+TGG | - | tig0039907:15698-15717 | None:intergenic | 45.0% | |
| CTTGGAGGAATTGCAGAATG+TGG | - | tig0039907:16086-16105 | None:intergenic | 45.0% | |
| CACATTCTGCAATTCCTCCA+AGG | + | tig0039907:16084-16103 | Msa1458910:CDS | 45.0% | |
| TAAAGGGAAAAGCCTACCCT+TGG | - | tig0039907:16104-16123 | None:intergenic | 45.0% | |
| GGAATCGGTGCATGTTTGAA+TGG | + | tig0039907:16183-16202 | Msa1458910:intron | 45.0% | |
| TCGGTGCATGTTTGAATGGA+CGG | + | tig0039907:16187-16206 | Msa1458910:intron | 45.0% | |
| GCTCGGAGCTTCAACAAAAT+CGG | - | tig0039907:16270-16289 | None:intergenic | 45.0% | |
| ACCTTCCATGGATGAAGTTG+AGG | - | tig0039907:16530-16549 | None:intergenic | 45.0% | |
| TCAACTTCATCCATGGAAGG+TGG | + | tig0039907:16529-16548 | Msa1458910:CDS | 45.0% | |
| AGTTGGAAATGCCATTGTGG+TGG | + | tig0039907:16607-16626 | Msa1458910:CDS | 45.0% | |
| ! | AGATAGAGGGTGCAGAGTGT+TGG | - | tig0039907:15669-15688 | None:intergenic | 50.0% |
| ! | GTAGTGGAGGCTGAGATAGA+GGG | - | tig0039907:15682-15701 | None:intergenic | 50.0% |
| ! | TGTAGTGGAGGCTGAGATAG+AGG | - | tig0039907:15683-15702 | None:intergenic | 50.0% |
| TCTGCAATTCCTCCAAGGGT+AGG | + | tig0039907:16089-16108 | Msa1458910:intron | 50.0% | |
| CTGCCATGCATGGATGACAT+TGG | - | tig0039907:16465-16484 | None:intergenic | 50.0% | |
| GGCTGAACATGTTCATGGCT+TGG | - | tig0039907:16496-16515 | None:intergenic | 50.0% | |
| AGCCATGAACATGTTCAGCC+AGG | + | tig0039907:16496-16515 | Msa1458910:intron | 50.0% | |
| GACCTGGCTGAACATGTTCA+TGG | - | tig0039907:16501-16520 | None:intergenic | 50.0% | |
| CACTGCCTCAACTTCATCCA+TGG | + | tig0039907:16522-16541 | Msa1458910:CDS | 50.0% | |
| GCCTCAACTTCATCCATGGA+AGG | + | tig0039907:16526-16545 | Msa1458910:CDS | 50.0% | |
| TGAAGAAGTGGCCACCACAA+TGG | - | tig0039907:16621-16640 | None:intergenic | 50.0% | |
| ! | AGATAGAGGGTGCAGAGTGT+TGG | - | tig0039907:15669-15688 | None:intergenic | 50.0% |
| ! | GTAGTGGAGGCTGAGATAGA+GGG | - | tig0039907:15682-15701 | None:intergenic | 50.0% |
| ! | TGTAGTGGAGGCTGAGATAG+AGG | - | tig0039907:15683-15702 | None:intergenic | 50.0% |
| TCTGCAATTCCTCCAAGGGT+AGG | + | tig0039907:16089-16108 | Msa1458910:intron | 50.0% | |
| CTGCCATGCATGGATGACAT+TGG | - | tig0039907:16465-16484 | None:intergenic | 50.0% | |
| GGCTGAACATGTTCATGGCT+TGG | - | tig0039907:16496-16515 | None:intergenic | 50.0% | |
| AGCCATGAACATGTTCAGCC+AGG | + | tig0039907:16496-16515 | Msa1458910:intron | 50.0% | |
| GACCTGGCTGAACATGTTCA+TGG | - | tig0039907:16501-16520 | None:intergenic | 50.0% | |
| CACTGCCTCAACTTCATCCA+TGG | + | tig0039907:16522-16541 | Msa1458910:CDS | 50.0% | |
| GCCTCAACTTCATCCATGGA+AGG | + | tig0039907:16526-16545 | Msa1458910:CDS | 50.0% | |
| TGAAGAAGTGGCCACCACAA+TGG | - | tig0039907:16621-16640 | None:intergenic | 50.0% | |
| GGAGAGGGATAGTGTAGTGG+AGG | - | tig0039907:15695-15714 | None:intergenic | 55.0% | |
| AGGGAAAAGCCTACCCTTGG+AGG | - | tig0039907:16101-16120 | None:intergenic | 55.0% | |
| GGAACTTGCACTGCCATGCA+TGG | - | tig0039907:16475-16494 | None:intergenic | 55.0% | |
| GAAGTTGAGGCAGTGTGACC+TGG | - | tig0039907:16517-16536 | None:intergenic | 55.0% | |
| GGAGAGGGATAGTGTAGTGG+AGG | - | tig0039907:15695-15714 | None:intergenic | 55.0% | |
| AGGGAAAAGCCTACCCTTGG+AGG | - | tig0039907:16101-16120 | None:intergenic | 55.0% | |
| GGAACTTGCACTGCCATGCA+TGG | - | tig0039907:16475-16494 | None:intergenic | 55.0% | |
| GAAGTTGAGGCAGTGTGACC+TGG | - | tig0039907:16517-16536 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0039907 | gene | 15653 | 16648 | 15653 | ID=Msa1458910;Name=Msa1458910 |
| tig0039907 | mRNA | 15653 | 16648 | 15653 | ID=Msa1458910-mRNA-1;Parent=Msa1458910;Name=Msa1458910-mRNA-1;_AED=0.16;_eAED=0.17;_QI=337|0|0.5|1|0|0|2|0|83 |
| tig0039907 | exon | 15653 | 16106 | 15653 | ID=Msa1458910-mRNA-1:exon:21999;Parent=Msa1458910-mRNA-1 |
| tig0039907 | exon | 16514 | 16648 | 16514 | ID=Msa1458910-mRNA-1:exon:22000;Parent=Msa1458910-mRNA-1 |
| tig0039907 | five_prime_UTR | 15653 | 15989 | 15653 | ID=Msa1458910-mRNA-1:five_prime_utr;Parent=Msa1458910-mRNA-1 |
| tig0039907 | CDS | 15990 | 16106 | 15990 | ID=Msa1458910-mRNA-1:cds;Parent=Msa1458910-mRNA-1 |
| tig0039907 | CDS | 16514 | 16648 | 16514 | ID=Msa1458910-mRNA-1:cds;Parent=Msa1458910-mRNA-1 |
| Gene Sequence |
| Protein sequence |
