Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0941820 | A0A072U6K8 | 91.299 | 885 | 50 | 3 | 1 | 858 | 1 | 885 | 0.0 | 1522 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000190 | Msa0941820 | 0.805681 | 1.187279e-49 | -8.615850e-47 |
| Msa0002930 | Msa0941820 | 0.804435 | 2.162790e-49 | -8.615850e-47 |
| Msa0029910 | Msa0941820 | 0.824674 | 7.103070e-54 | -8.615850e-47 |
| Msa0076250 | Msa0941820 | 0.825088 | 5.670773e-54 | -8.615850e-47 |
| Msa0077120 | Msa0941820 | 0.802942 | 4.414787e-49 | -8.615850e-47 |
| Msa0104500 | Msa0941820 | 0.811674 | 6.222236e-51 | -8.615850e-47 |
| Msa0641360 | Msa0941820 | 0.810792 | 9.663306e-51 | -8.615850e-47 |
| Msa0662240 | Msa0941820 | 0.818906 | 1.535125e-52 | -8.615850e-47 |
| Msa0669840 | Msa0941820 | 0.830593 | 2.691547e-55 | -8.615850e-47 |
| Msa0709450 | Msa0941820 | 0.807548 | 4.791147e-50 | -8.615850e-47 |
| Msa0739470 | Msa0941820 | 0.813246 | 2.821046e-51 | -8.615850e-47 |
| Msa0739580 | Msa0941820 | 0.812333 | 4.468559e-51 | -8.615850e-47 |
| Msa0739730 | Msa0941820 | 0.834379 | 3.101358e-56 | -8.615850e-47 |
| Msa0742180 | Msa0941820 | 0.820874 | 5.446032e-53 | -8.615850e-47 |
| Msa0782230 | Msa0941820 | 0.808631 | 2.816743e-50 | -8.615850e-47 |
| Msa0782360 | Msa0941820 | 0.807262 | 5.508312e-50 | -8.615850e-47 |
| Msa0786040 | Msa0941820 | 0.819224 | 1.299668e-52 | -8.615850e-47 |
| Msa0819890 | Msa0941820 | 0.840757 | 7.173462e-58 | -8.615850e-47 |
| Msa0823400 | Msa0941820 | 0.823554 | 1.301291e-53 | -8.615850e-47 |
| Msa0124130 | Msa0941820 | 0.849188 | 3.794690e-60 | -8.615850e-47 |
| Msa0149140 | Msa0941820 | 0.809100 | 2.236216e-50 | -8.615850e-47 |
| Msa0169860 | Msa0941820 | 0.804728 | 1.879708e-49 | -8.615850e-47 |
| Msa0169920 | Msa0941820 | 0.802653 | 5.064903e-49 | -8.615850e-47 |
| Msa0197100 | Msa0941820 | 0.808012 | 3.816401e-50 | -8.615850e-47 |
| Msa0212150 | Msa0941820 | 0.829968 | 3.825082e-55 | -8.615850e-47 |
| Msa0220420 | Msa0941820 | 0.803244 | 3.823065e-49 | -8.615850e-47 |
| Msa0221290 | Msa0941820 | 0.841993 | 3.392048e-58 | -8.615850e-47 |
| Msa0230740 | Msa0941820 | 0.814968 | 1.175574e-51 | -8.615850e-47 |
| Msa0373960 | Msa0941820 | 0.824771 | 6.739031e-54 | -8.615850e-47 |
| Msa0385390 | Msa0941820 | 0.819609 | 1.061734e-52 | -8.615850e-47 |
| Msa0392420 | Msa0941820 | 0.835412 | 1.704036e-56 | -8.615850e-47 |
| Msa0392460 | Msa0941820 | 0.824630 | 7.272474e-54 | -8.615850e-47 |
| Msa0392490 | Msa0941820 | 0.830213 | 3.333436e-55 | -8.615850e-47 |
| Msa0406000 | Msa0941820 | 0.824844 | 6.475403e-54 | -8.615850e-47 |
| Msa0415320 | Msa0941820 | 0.842346 | 2.735678e-58 | -8.615850e-47 |
| Msa0424350 | Msa0941820 | 0.802954 | 4.389732e-49 | -8.615850e-47 |
| Msa0451400 | Msa0941820 | 0.836027 | 1.190072e-56 | -8.615850e-47 |
| Msa0469260 | Msa0941820 | 0.806742 | 7.097316e-50 | -8.615850e-47 |
| Msa0239030 | Msa0941820 | 0.819108 | 1.380698e-52 | -8.615850e-47 |
| Msa0243100 | Msa0941820 | 0.801731 | 7.839601e-49 | -8.615850e-47 |
| Msa0252630 | Msa0941820 | 0.823059 | 1.698138e-53 | -8.615850e-47 |
| Msa0252770 | Msa0941820 | 0.825371 | 4.861231e-54 | -8.615850e-47 |
| Msa0261340 | Msa0941820 | 0.811575 | 6.537592e-51 | -8.615850e-47 |
| Msa0276740 | Msa0941820 | 0.804456 | 2.141307e-49 | -8.615850e-47 |
| Msa0289920 | Msa0941820 | 0.812822 | 3.494602e-51 | -8.615850e-47 |
| Msa0291330 | Msa0941820 | 0.801474 | 8.853277e-49 | -8.615850e-47 |
| Msa0306120 | Msa0941820 | 0.800988 | 1.112937e-48 | -8.615850e-47 |
| Msa0316680 | Msa0941820 | 0.819206 | 1.311639e-52 | -8.615850e-47 |
| Msa0317510 | Msa0941820 | 0.808617 | 2.835692e-50 | -8.615850e-47 |
| Msa0329620 | Msa0941820 | 0.827831 | 1.258879e-54 | -8.615850e-47 |
| Msa0344570 | Msa0941820 | 0.814471 | 1.515214e-51 | -8.615850e-47 |
| Msa0351770 | Msa0941820 | 0.816763 | 4.675202e-52 | -8.615850e-47 |
| Msa0359250 | Msa0941820 | 0.809684 | 1.675072e-50 | -8.615850e-47 |
| Msa0487570 | Msa0941820 | 0.833142 | 6.318408e-56 | -8.615850e-47 |
| Msa0487630 | Msa0941820 | 0.827936 | 1.187839e-54 | -8.615850e-47 |
| Msa0492190 | Msa0941820 | 0.835078 | 2.068790e-56 | -8.615850e-47 |
| Msa0514980 | Msa0941820 | 0.802145 | 6.447174e-49 | -8.615850e-47 |
| Msa0515950 | Msa0941820 | 0.810582 | 1.072911e-50 | -8.615850e-47 |
| Msa0523000 | Msa0941820 | 0.833487 | 5.185984e-56 | -8.615850e-47 |
| Msa0534930 | Msa0941820 | 0.850437 | 1.698676e-60 | -8.615850e-47 |
| Msa0535040 | Msa0941820 | 0.854422 | 1.244041e-61 | -8.615850e-47 |
| Msa0575740 | Msa0941820 | 0.801040 | 1.086021e-48 | -8.615850e-47 |
| Msa0591790 | Msa0941820 | 0.841251 | 5.323287e-58 | -8.615850e-47 |
| Msa0591800 | Msa0941820 | 0.809891 | 1.512129e-50 | -8.615850e-47 |
| Msa0594090 | Msa0941820 | 0.819556 | 1.091506e-52 | -8.615850e-47 |
| Msa0843220 | Msa0941820 | 0.801270 | 9.746242e-49 | -8.615850e-47 |
| Msa0860160 | Msa0941820 | 0.833816 | 4.290534e-56 | -8.615850e-47 |
| Msa0860170 | Msa0941820 | 0.817027 | 4.080521e-52 | -8.615850e-47 |
| Msa0860280 | Msa0941820 | 0.808731 | 2.681951e-50 | -8.615850e-47 |
| Msa0876550 | Msa0941820 | 0.811271 | 7.608952e-51 | -8.615850e-47 |
| Msa0876560 | Msa0941820 | 0.884919 | 1.269936e-71 | -8.615850e-47 |
| Msa0883060 | Msa0941820 | 0.800746 | 1.247126e-48 | -8.615850e-47 |
| Msa0898730 | Msa0941820 | 0.804945 | 1.692839e-49 | -8.615850e-47 |
| Msa0899950 | Msa0941820 | 0.808155 | 3.558023e-50 | -8.615850e-47 |
| Msa0910430 | Msa0941820 | 0.807726 | 4.391074e-50 | -8.615850e-47 |
| Msa0911540 | Msa0941820 | 0.823361 | 1.443952e-53 | -8.615850e-47 |
| Msa0927120 | Msa0941820 | 0.801552 | 8.533896e-49 | -8.615850e-47 |
| Msa0929870 | Msa0941820 | 0.817765 | 2.782640e-52 | -8.615850e-47 |
| Msa0936410 | Msa0941820 | 0.829665 | 4.534166e-55 | -8.615850e-47 |
| Msa0941820 | Msa0961690 | 0.809269 | 2.057237e-50 | -8.615850e-47 |
| Msa0941820 | Msa0961770 | 0.811561 | 6.583439e-51 | -8.615850e-47 |
| Msa0941820 | Msa0964840 | 0.847874 | 8.772351e-60 | -8.615850e-47 |
| Msa0941820 | Msa0965310 | 0.843226 | 1.595896e-58 | -8.615850e-47 |
| Msa0941820 | Msa0972670 | 0.801569 | 8.462971e-49 | -8.615850e-47 |
| Msa0941820 | Msa0973250 | 0.833471 | 5.234202e-56 | -8.615850e-47 |
| Msa0941820 | Msa0996270 | 0.803822 | 2.902149e-49 | -8.615850e-47 |
| Msa0941820 | Msa0999300 | 0.808037 | 3.770302e-50 | -8.615850e-47 |
| Msa0941820 | Msa0999350 | 0.811751 | 5.984532e-51 | -8.615850e-47 |
| Msa0941820 | Msa0999400 | 0.800700 | 1.274266e-48 | -8.615850e-47 |
| Msa0941820 | Msa0999410 | 0.801325 | 9.497559e-49 | -8.615850e-47 |
| Msa0941820 | Msa0999700 | 0.839040 | 2.009937e-57 | -8.615850e-47 |
| Msa0941820 | Msa1084520 | 0.815841 | 7.517045e-52 | -8.615850e-47 |
| Msa0941820 | Msa1092020 | 0.804857 | 1.766373e-49 | -8.615850e-47 |
| Msa0941820 | Msa1125810 | 0.820387 | 7.048030e-53 | -8.615850e-47 |
| Msa0941820 | Msa1145020 | 0.816010 | 6.893214e-52 | -8.615850e-47 |
| Msa0941820 | Msa1169990 | 0.803566 | 3.278845e-49 | -8.615850e-47 |
| Msa0941820 | Msa1171310 | 0.807829 | 4.174159e-50 | -8.615850e-47 |
| Msa0941820 | Msa1179280 | 0.822027 | 2.950554e-53 | -8.615850e-47 |
| Msa0941820 | Msa1179520 | 0.815476 | 9.068404e-52 | -8.615850e-47 |
| Msa0941820 | Msa1200090 | 0.815316 | 9.841107e-52 | -8.615850e-47 |
| Msa0941820 | Msa1201110 | 0.818093 | 2.346830e-52 | -8.615850e-47 |
| Msa0941820 | Msa1213500 | 0.805426 | 1.342413e-49 | -8.615850e-47 |
| Msa0941820 | Msa1228190 | 0.856887 | 2.373831e-62 | -8.615850e-47 |
| Msa0941820 | Msa1228200 | 0.802436 | 5.614279e-49 | -8.615850e-47 |
| Msa0941820 | Msa1233560 | 0.832429 | 9.503124e-56 | -8.615850e-47 |
| Msa0941820 | Msa1260610 | 0.807050 | 6.108688e-50 | -8.615850e-47 |
| Msa0941820 | Msa1271260 | 0.825602 | 4.285604e-54 | -8.615850e-47 |
| Msa0941820 | Msa1275820 | 0.811722 | 6.074463e-51 | -8.615850e-47 |
| Msa0941820 | Msa1298370 | 0.805515 | 1.286261e-49 | -8.615850e-47 |
| Msa0941820 | Msa1305510 | 0.824518 | 7.729419e-54 | -8.615850e-47 |
| Msa0941820 | Msa1313970 | 0.824241 | 8.982258e-54 | -8.615850e-47 |
| Msa0941820 | Msa1316540 | 0.827087 | 1.898361e-54 | -8.615850e-47 |
| Msa0941820 | Msa1326630 | 0.806345 | 8.605363e-50 | -8.615850e-47 |
| Msa0941820 | Msa1346280 | 0.802280 | 6.046909e-49 | -8.615850e-47 |
| Msa0941820 | Msa1356740 | 0.802074 | 6.665668e-49 | -8.615850e-47 |
| Msa0941820 | Msa1374550 | 0.820313 | 7.327576e-53 | -8.615850e-47 |
| Msa0941820 | Msa1389050 | 0.824098 | 9.700633e-54 | -8.615850e-47 |
| Msa0941820 | Msa1431850 | 0.803903 | 2.791828e-49 | -8.615850e-47 |
| Msa0941820 | Msa1438250 | 0.802741 | 4.859202e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0941820 | MtrunA17_Chr6g0457761 | 91.299 | 885 | 50 | 3 | 1 | 858 | 1 | 885 | 0.0 | 1522 |
| Msa0941820 | MtrunA17_Chr7g0250831 | 47.119 | 972 | 362 | 34 | 1 | 854 | 1 | 938 | 0.0 | 624 |
| Msa0941820 | MtrunA17_Chr1g0172971 | 43.943 | 421 | 164 | 17 | 59 | 444 | 152 | 535 | 1.26e-64 | 226 |
| Msa0941820 | MtrunA17_Chr1g0192581 | 30.682 | 176 | 111 | 5 | 681 | 850 | 584 | 754 | 9.71e-15 | 78.6 |
| Msa0941820 | MtrunA17_Chr7g0271711 | 25.000 | 484 | 270 | 20 | 438 | 851 | 448 | 908 | 3.67e-13 | 73.6 |
| Msa0941820 | MtrunA17_Chr2g0294831 | 23.204 | 181 | 126 | 4 | 676 | 853 | 753 | 923 | 1.99e-11 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0941820 | AT1G67040.2 | 28.726 | 926 | 484 | 40 | 1 | 850 | 1 | 826 | 1.86e-71 | 252 |
| Msa0941820 | AT1G67040.1 | 28.882 | 921 | 487 | 38 | 1 | 850 | 1 | 824 | 4.70e-71 | 251 |
Find 146 sgRNAs with CRISPR-Local
Find 233 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATCTCCCAATCAATTATT+TGG | 0.152316 | 6_3:+15827264 | None:intergenic |
| TCCAATGATCAAATGTTTAA+TGG | 0.186012 | 6_3:-15828525 | Msa0941820:CDS |
| ATCAGAAAATGAAGATTTCT+TGG | 0.196487 | 6_3:+15829928 | None:intergenic |
| TTCTGTCACAATGCCGTTAT+TGG | 0.209571 | 6_3:+15829547 | None:intergenic |
| ATGCAAGAAAGCTGAGATTT+TGG | 0.225793 | 6_3:-15827345 | Msa0941820:CDS |
| TTCATTGCTGAATTGGTTCT+TGG | 0.260531 | 6_3:-15827593 | Msa0941820:CDS |
| AATTGCTGCCACAATTATTA+TGG | 0.262329 | 6_3:-15827407 | Msa0941820:CDS |
| CTTATTGTCGTTAATCTTAT+CGG | 0.264377 | 6_3:+15828812 | None:intergenic |
| TAGTTCACCTCTAAAGAAAA+AGG | 0.274374 | 6_3:-15828763 | Msa0941820:CDS |
| ACAAATCCTGTTGGATTATT+CGG | 0.291444 | 6_3:-15827998 | Msa0941820:CDS |
| ATCAATTCGGTAAACAAGTT+TGG | 0.298864 | 6_3:+15827691 | None:intergenic |
| TGAGGATGTGCTTCAAATTT+TGG | 0.301157 | 6_3:-15827177 | Msa0941820:CDS |
| TGATGATGGTGAGGAGTCTT+TGG | 0.307931 | 6_3:-15829903 | Msa0941820:CDS |
| CCTTCATGTTTCAACCGTTC+AGG | 0.309083 | 6_3:+15827773 | None:intergenic |
| AATCAATCATGTTATAATTC+TGG | 0.310463 | 6_3:-15829494 | Msa0941820:CDS |
| GCCATTAAACATTTGATCAT+TGG | 0.322995 | 6_3:+15828524 | None:intergenic |
| TTTGATCATTGGAACATGTT+AGG | 0.323969 | 6_3:+15828535 | None:intergenic |
| TGCAAGCACATATATTCTTC+TGG | 0.326935 | 6_3:+15829232 | None:intergenic |
| AGTTATCTTCATTGCTGAAT+TGG | 0.339654 | 6_3:-15827600 | Msa0941820:CDS |
| ATCTCAGCTTTCTTGCATAA+AGG | 0.342572 | 6_3:+15827350 | None:intergenic |
| AACAGAAGCTGAAAGAATTA+AGG | 0.344196 | 6_3:-15828653 | Msa0941820:CDS |
| CAGCTATTTGATTGGAATAG+TGG | 0.352493 | 6_3:-15830968 | Msa0941820:CDS |
| CATTTGACATTAGAATTGTT+TGG | 0.355599 | 6_3:+15828858 | None:intergenic |
| TTTCAATCGAAGCCAACTTA+AGG | 0.361553 | 6_3:-15827468 | Msa0941820:CDS |
| TCAGGGGTCGATGATGTCTT+TGG | 0.362655 | 6_3:+15828703 | None:intergenic |
| GGAAGATGCAAGAAAACATT+TGG | 0.365373 | 6_3:+15829586 | None:intergenic |
| TGAGTCACTCATTAGGAAAA+TGG | 0.365793 | 6_3:-15827244 | Msa0941820:CDS |
| TTCAATCGAAGCCAACTTAA+GGG | 0.371336 | 6_3:-15827467 | Msa0941820:CDS |
| GAAAATGCGGAGTTGGTTAC+TGG | 0.371411 | 6_3:-15828624 | Msa0941820:CDS |
| TCAGAACCTTGTCTGCTTGA+AGG | 0.375714 | 6_3:+15828921 | None:intergenic |
| AAGATAGGTGGTGGTTGTAT+TGG | 0.381834 | 6_3:-15831001 | Msa0941820:CDS |
| TTTGCAATATCTTATCAATT+CGG | 0.382071 | 6_3:+15827678 | None:intergenic |
| TTTGATTGTAGATTGCTAAT+GGG | 0.385241 | 6_3:-15830090 | Msa0941820:intron |
| AACTAAACCAAATAATTGAT+TGG | 0.387081 | 6_3:-15827271 | Msa0941820:CDS |
| TCATTTAACACAGGAAAGAT+AGG | 0.389980 | 6_3:-15827728 | Msa0941820:CDS |
| GAAGAGTCCGAGAATTTCTT+CGG | 0.392103 | 6_3:-15829690 | Msa0941820:CDS |
| TTTGAGGCAGGTGTTGATAT+TGG | 0.398714 | 6_3:-15827200 | Msa0941820:CDS |
| GATTTATCTCTCTTTGAAGA+TGG | 0.402536 | 6_3:+15829950 | None:intergenic |
| AAGAAGAATAATCAAAAGAT+AGG | 0.409200 | 6_3:-15831016 | Msa0941820:CDS |
| TCAGGTTGGTTTATAGAGCC+AGG | 0.416703 | 6_3:+15827791 | None:intergenic |
| CACCTAAAACATCTTCTCTC+AGG | 0.418783 | 6_3:+15828685 | None:intergenic |
| CTCTTTCCCGAAGAAATTCT+CGG | 0.418867 | 6_3:+15829683 | None:intergenic |
| TCAGATAAGGTCTCCTACTA+AGG | 0.420175 | 6_3:-15828976 | Msa0941820:CDS |
| TTGCATCTATCTGCCTTAGT+AGG | 0.422024 | 6_3:+15828963 | None:intergenic |
| GCGAAAACATCTGAAACAAT+AGG | 0.426611 | 6_3:+15829401 | None:intergenic |
| CGAATAGAAATCCCTTAAGT+TGG | 0.429969 | 6_3:+15827456 | None:intergenic |
| AAAAGCTTCAATGTCGAAAT+CGG | 0.432817 | 6_3:+15827220 | None:intergenic |
| CACATATATTCTTCTGGAAG+TGG | 0.436122 | 6_3:+15829238 | None:intergenic |
| GCCTCAGAAGCTTCGGAAAA+CGG | 0.442167 | 6_3:-15829846 | Msa0941820:CDS |
| AAGTCTTGTAGCTAGGTTGA+TGG | 0.445700 | 6_3:-15829987 | Msa0941820:CDS |
| CAAACCGCATGGAGGCTTAG+AGG | 0.445930 | 6_3:-15829192 | Msa0941820:CDS |
| AAGAGTCCGAGAATTTCTTC+GGG | 0.450925 | 6_3:-15829689 | Msa0941820:CDS |
| AAACGGAGGCGAACGAGAGA+AGG | 0.462371 | 6_3:-15829829 | Msa0941820:CDS |
| TAGATTGCTAATGGGAATAG+TGG | 0.462857 | 6_3:-15830082 | Msa0941820:CDS |
| TGGGAGATGAGTCACTCATT+AGG | 0.465318 | 6_3:-15827251 | Msa0941820:CDS |
| ACTAAACCAAATAATTGATT+GGG | 0.466620 | 6_3:-15827270 | Msa0941820:CDS |
| ATCAAGACTACTGGAAGAAA+AGG | 0.470198 | 6_3:+15827925 | None:intergenic |
| CTGTTTGTAGCCTGCAAACC+AGG | 0.470209 | 6_3:+15829611 | None:intergenic |
| AGAAGGGCAGTGACTAGGTT+TGG | 0.476035 | 6_3:-15829812 | Msa0941820:CDS |
| GATGCAAATTTGATCTAGAA+AGG | 0.476115 | 6_3:-15828947 | Msa0941820:CDS |
| GAAGCTTCCAAGACTGATCC+AGG | 0.477697 | 6_3:+15827947 | None:intergenic |
| TTCTGGCATAGACAAGTCAT+TGG | 0.478796 | 6_3:-15829477 | Msa0941820:CDS |
| GATTAAGAAGTGGGAATGTA+TGG | 0.479978 | 6_3:-15827303 | Msa0941820:CDS |
| CAAGAGTGAGATTAAGAAGT+GGG | 0.481067 | 6_3:-15827312 | Msa0941820:CDS |
| TTTCTTTAGAGGTGAACTAA+AGG | 0.482940 | 6_3:+15828767 | None:intergenic |
| AGTCAAGGCCTCAGAAGCTT+CGG | 0.491390 | 6_3:-15829853 | Msa0941820:CDS |
| AGTGGAAATAAAGACTTTGT+TGG | 0.492104 | 6_3:-15829026 | Msa0941820:CDS |
| TCTCAGTCCTGGATCAGTCT+TGG | 0.495904 | 6_3:-15827954 | Msa0941820:CDS |
| CATAAAACTCGAACACAAGA+AGG | 0.496476 | 6_3:-15829140 | Msa0941820:CDS |
| TAACGGCATTGTGACAGAAA+TGG | 0.498435 | 6_3:-15829543 | Msa0941820:CDS |
| TCTTCCAGTAGTCTTGATGA+AGG | 0.498605 | 6_3:-15827920 | Msa0941820:CDS |
| TGAGCCTTCATCAAGACTAC+TGG | 0.500552 | 6_3:+15827916 | None:intergenic |
| TCAAAGTGTCCTACCAATAA+CGG | 0.502704 | 6_3:-15829560 | Msa0941820:CDS |
| GTCTAGAGAAAATGCGGAGT+TGG | 0.503808 | 6_3:-15828631 | Msa0941820:CDS |
| GAAATTCTCGGACTCTTCAA+AGG | 0.504286 | 6_3:+15829695 | None:intergenic |
| TCTAATGTCAAATGTAAAAG+AGG | 0.505745 | 6_3:-15828849 | Msa0941820:CDS |
| ATTGGTAGGACACTTTGAAA+TGG | 0.506348 | 6_3:+15829565 | None:intergenic |
| CATGAGTTATGATCTTCTCC+TGG | 0.522859 | 6_3:+15829300 | None:intergenic |
| AAGTGGGAATTGTGCTATAG+AGG | 0.524576 | 6_3:-15830038 | Msa0941820:CDS |
| GAGGTTCCGAATAATCCAAC+AGG | 0.525298 | 6_3:+15827992 | None:intergenic |
| TTTCAAATGCGAATAAAAGT+GGG | 0.529808 | 6_3:-15830054 | Msa0941820:CDS |
| TCTGGCATAGACAAGTCATT+GGG | 0.533419 | 6_3:-15829476 | Msa0941820:CDS |
| ACCTAAAACATCTTCTCTCA+GGG | 0.533810 | 6_3:+15828686 | None:intergenic |
| AACGGAGGCGAACGAGAGAA+GGG | 0.539776 | 6_3:-15829828 | Msa0941820:CDS |
| AGTGATGATGCTAGTGTGAA+TGG | 0.540323 | 6_3:-15831064 | Msa0941820:CDS |
| AATAATCAAAAGATAGGTGG+TGG | 0.551654 | 6_3:-15831010 | Msa0941820:CDS |
| CATGTTTCAACCGTTCAGGT+TGG | 0.553992 | 6_3:+15827777 | None:intergenic |
| TCAAGAGTGAGATTAAGAAG+TGG | 0.554941 | 6_3:-15827313 | Msa0941820:CDS |
| AAGAAGTGGGAATGTATGGT+TGG | 0.555304 | 6_3:-15827299 | Msa0941820:CDS |
| CAGTGTGAGACAAATCCTGT+TGG | 0.555796 | 6_3:-15828007 | Msa0941820:CDS |
| AGTAGTCTTGATGAAGGCTC+AGG | 0.559971 | 6_3:-15827914 | Msa0941820:intron |
| ACGAGAGAAGGGCAGTGACT+AGG | 0.561243 | 6_3:-15829817 | Msa0941820:CDS |
| CATGGAGGCTTAGAGGATGA+TGG | 0.562488 | 6_3:-15829185 | Msa0941820:CDS |
| AGATCAAAGCTGCGAATGCA+AGG | 0.568667 | 6_3:-15829880 | Msa0941820:CDS |
| AAGACTGACAGAGAGCAAGC+TGG | 0.569053 | 6_3:-15827636 | Msa0941820:CDS |
| TGTAGTTCTTCTCAGAAGCC+AGG | 0.569110 | 6_3:-15829318 | Msa0941820:CDS |
| AAACAAGTTTATTAGCGTGA+TGG | 0.570139 | 6_3:+15829720 | None:intergenic |
| AGTCTTGTAGCTAGGTTGAT+GGG | 0.572119 | 6_3:-15829986 | Msa0941820:CDS |
| ATCAACCTAGCTACAAGACT+TGG | 0.573014 | 6_3:+15829989 | None:intergenic |
| AGAGGTGAACTAAAGGAAGA+TGG | 0.574837 | 6_3:+15828774 | None:intergenic |
| TGACAGAAATGGCTGGAACT+CGG | 0.575576 | 6_3:-15829532 | Msa0941820:CDS |
| AATGGTAATCATCTCAGTCC+TGG | 0.577258 | 6_3:-15827965 | Msa0941820:CDS |
| CGAATGCAAGGCATGAGTCA+AGG | 0.578523 | 6_3:-15829868 | Msa0941820:CDS |
| TAAGTGGTCGAACTCAGATA+AGG | 0.582159 | 6_3:-15828989 | Msa0941820:CDS |
| AATTCTTGAAGAATCAATGC+AGG | 0.584695 | 6_3:+15828582 | None:intergenic |
| TTATCTGAGTTCGACCACTT+AGG | 0.585510 | 6_3:+15828991 | None:intergenic |
| CAGGTTGGTTTATAGAGCCA+GGG | 0.586441 | 6_3:+15827792 | None:intergenic |
| GGCATTGTGACAGAAATGGC+TGG | 0.587128 | 6_3:-15829539 | Msa0941820:CDS |
| AAGCACCAAGTCTTGTAGCT+AGG | 0.588985 | 6_3:-15829994 | Msa0941820:CDS |
| AGAAGAGACTAACCAGGAGG+AGG | 0.589050 | 6_3:+15830908 | None:intergenic |
| TAAACACACCATAATAATTG+TGG | 0.593837 | 6_3:+15827399 | None:intergenic |
| GTGGGAATGTATGGTTGGCA+TGG | 0.594355 | 6_3:-15827294 | Msa0941820:CDS |
| ATTATGGTGTGTTTAAGTCA+TGG | 0.596620 | 6_3:-15827391 | Msa0941820:CDS |
| AAGAATAATCAAAAGATAGG+TGG | 0.598319 | 6_3:-15831013 | Msa0941820:CDS |
| GTTTAATGGCAAATGTCCCA+AGG | 0.602464 | 6_3:-15828511 | Msa0941820:intron |
| CCTGAACGGTTGAAACATGA+AGG | 0.602964 | 6_3:-15827773 | Msa0941820:CDS |
| GTCACTAGGAACAATGAGGA+AGG | 0.607114 | 6_3:-15827566 | Msa0941820:CDS |
| TCCTGTGTTAAATGATGCTG+CGG | 0.608805 | 6_3:+15827736 | None:intergenic |
| GCTCTATAAACCAACCTGAA+CGG | 0.609858 | 6_3:-15827787 | Msa0941820:CDS |
| ATTGCTAATGGGAATAGTGG+AGG | 0.611632 | 6_3:-15830079 | Msa0941820:CDS |
| TGGTTCTTGGAAATGTCACT+AGG | 0.612409 | 6_3:-15827580 | Msa0941820:CDS |
| AGGAAACCTTCAAGCAGACA+AGG | 0.614022 | 6_3:-15828927 | Msa0941820:CDS |
| ACAACTTCAAGCACTGTGAG+TGG | 0.614489 | 6_3:-15829044 | Msa0941820:CDS |
| ATGCAAGAAATGAGAAGCTG+TGG | 0.616016 | 6_3:+15827536 | None:intergenic |
| GATTGATTCTGTATATCTTG+TGG | 0.620065 | 6_3:+15829509 | None:intergenic |
| AATGTCAAATGTAAAAGAGG+AGG | 0.620342 | 6_3:-15828846 | Msa0941820:CDS |
| GTCACAATGCCGTTATTGGT+AGG | 0.622935 | 6_3:+15829551 | None:intergenic |
| ATAAAACTCGAACACAAGAA+GGG | 0.626617 | 6_3:-15829139 | Msa0941820:CDS |
| TTATTCGGAACCTCGTGCAA+TGG | 0.628364 | 6_3:-15827983 | Msa0941820:CDS |
| TTCTGATAGTGATGATGGTG+AGG | 0.629680 | 6_3:-15829912 | Msa0941820:CDS |
| TCCGCAGCATCATTTAACAC+AGG | 0.629948 | 6_3:-15827737 | Msa0941820:CDS |
| ATTAAGGTCTAGAGAAAATG+CGG | 0.633842 | 6_3:-15828637 | Msa0941820:CDS |
| GGTTTGAATCAAAGCCTAAG+TGG | 0.634029 | 6_3:-15829005 | Msa0941820:CDS |
| GGCAGGTGTTGATATTGGTG+AGG | 0.636506 | 6_3:-15827195 | Msa0941820:CDS |
| AGAGTACATCTCGAAGCTCA+AGG | 0.642881 | 6_3:-15829664 | Msa0941820:CDS |
| CTGGCATAGACAAGTCATTG+GGG | 0.665747 | 6_3:-15829475 | Msa0941820:CDS |
| GTCATGGTGTGCATGCACAA+AGG | 0.670574 | 6_3:-15827375 | Msa0941820:CDS |
| AAATGTCACTAGGAACAATG+AGG | 0.695218 | 6_3:-15827570 | Msa0941820:CDS |
| TCATCGCGCAAACCGCATGG+AGG | 0.697799 | 6_3:-15829200 | Msa0941820:CDS |
| TCAGAAGCTTCGGAAAACGG+AGG | 0.698643 | 6_3:-15829843 | Msa0941820:CDS |
| AGACAAGGTTCTGATGCACA+AGG | 0.700943 | 6_3:-15828912 | Msa0941820:CDS |
| TAACGACAATAAGATGAACA+AGG | 0.709510 | 6_3:-15828802 | Msa0941820:CDS |
| TGGCATAGACAAGTCATTGG+GGG | 0.718479 | 6_3:-15829474 | Msa0941820:CDS |
| GAGATGATTACCATTGCACG+AGG | 0.725090 | 6_3:+15827973 | None:intergenic |
| CCTAAAACATCTTCTCTCAG+GGG | 0.725373 | 6_3:+15828687 | None:intergenic |
| TCATCCTCTAAGCCTCCATG+CGG | 0.772619 | 6_3:+15829188 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTAAGAAAACAATAGAAA+TGG | + | chr6_3:15827589-15827608 | None:intergenic | 15.0% |
| !!! | CATTGATTATAATGAAAATA+AGG | + | chr6_3:15829820-15829839 | None:intergenic | 15.0% |
| !!! | TTGACTTATTTATCATTTTT+TGG | - | chr6_3:15829848-15829867 | Msa0941820:CDS | 15.0% |
| !!! | TCATTTTCTCAAATTATTAT+CGG | - | chr6_3:15829974-15829993 | Msa0941820:CDS | 15.0% |
| !! | AAGAAGAATAATCAAAAGAT+AGG | - | chr6_3:15827178-15827197 | Msa0941820:CDS | 20.0% |
| !! | TATATATTAACTATGAAGCA+CGG | - | chr6_3:15827355-15827374 | Msa0941820:CDS | 20.0% |
| !! | AACATTGTAATTATATGTGT+TGG | - | chr6_3:15827407-15827426 | Msa0941820:CDS | 20.0% |
| !! | AATCAATCATGTTATAATTC+TGG | - | chr6_3:15828700-15828719 | Msa0941820:CDS | 20.0% |
| !!! | TTGTCTAATTGTTATTTCTT+TGG | - | chr6_3:15829737-15829756 | Msa0941820:CDS | 20.0% |
| !! | GAATATAATCAATGTATTGA+TGG | + | chr6_3:15829946-15829965 | None:intergenic | 20.0% |
| !!! | TTTTATTTAAGCTTGTACTT+TGG | - | chr6_3:15830112-15830131 | Msa0941820:intron | 20.0% |
| !! | TTTGCAATATCTTATCAATT+CGG | + | chr6_3:15830519-15830538 | None:intergenic | 20.0% |
| !! | AACTAAACCAAATAATTGAT+TGG | - | chr6_3:15830923-15830942 | Msa0941820:CDS | 20.0% |
| !! | ACTAAACCAAATAATTGATT+GGG | - | chr6_3:15830924-15830943 | Msa0941820:CDS | 20.0% |
| ! | AAGAATAATCAAAAGATAGG+TGG | - | chr6_3:15827181-15827200 | Msa0941820:CDS | 25.0% |
| ! | AAATGTGAAAATTTGACATG+AGG | - | chr6_3:15827672-15827691 | Msa0941820:CDS | 25.0% |
| ! | AATGTGAAAATTTGACATGA+GGG | - | chr6_3:15827673-15827692 | Msa0941820:CDS | 25.0% |
| !! | GAACATATAATAATTTGTGC+TGG | - | chr6_3:15827803-15827822 | Msa0941820:CDS | 25.0% |
| !!! | GGTTTGAATTTAGTTTTCTT+TGG | - | chr6_3:15827824-15827843 | Msa0941820:intron | 25.0% |
| !! | CAAATTCAATTCCTTCTTTT+AGG | - | chr6_3:15828038-15828057 | Msa0941820:intron | 25.0% |
| !!! | TTTTGATTGTAGATTGCTAA+TGG | - | chr6_3:15828103-15828122 | Msa0941820:intron | 25.0% |
| ! | TTTGATTGTAGATTGCTAAT+GGG | - | chr6_3:15828104-15828123 | Msa0941820:intron | 25.0% |
| !! | TTTTCAAATGCGAATAAAAG+TGG | - | chr6_3:15828139-15828158 | Msa0941820:intron | 25.0% |
| ! | TTTCAAATGCGAATAAAAGT+GGG | - | chr6_3:15828140-15828159 | Msa0941820:intron | 25.0% |
| ! | ATCAGAAAATGAAGATTTCT+TGG | + | chr6_3:15828269-15828288 | None:intergenic | 25.0% |
| ! | CATTTGACATTAGAATTGTT+TGG | + | chr6_3:15829339-15829358 | None:intergenic | 25.0% |
| ! | TCTAATGTCAAATGTAAAAG+AGG | - | chr6_3:15829345-15829364 | Msa0941820:CDS | 25.0% |
| ! | CTTATTGTCGTTAATCTTAT+CGG | + | chr6_3:15829385-15829404 | None:intergenic | 25.0% |
| !!! | CAAAAAGTGTTAATGAGATA+AGG | - | chr6_3:15829460-15829479 | Msa0941820:CDS | 25.0% |
| ! | TCCAATGATCAAATGTTTAA+TGG | - | chr6_3:15829669-15829688 | Msa0941820:CDS | 25.0% |
| ! | TATCACTTATCAGTAAATGT+AGG | - | chr6_3:15829782-15829801 | Msa0941820:CDS | 25.0% |
| !! | ATATCCAACATATGATTTGT+AGG | + | chr6_3:15829875-15829894 | None:intergenic | 25.0% |
| ! | ATATGTTGGATATTCGTTAT+GGG | - | chr6_3:15829882-15829901 | Msa0941820:CDS | 25.0% |
| !! | TGCAAAGTTTAGATTCTTTT+TGG | - | chr6_3:15830533-15830552 | Msa0941820:intron | 25.0% |
| ! | TAAACACACCATAATAATTG+TGG | + | chr6_3:15830798-15830817 | None:intergenic | 25.0% |
| !! | TTGAAGATCTTGTAGATTTT+AGG | - | chr6_3:15831052-15831071 | Msa0941820:CDS | 25.0% |
| AATAATCAAAAGATAGGTGG+TGG | - | chr6_3:15827184-15827203 | Msa0941820:CDS | 30.0% | |
| ! | TTTTCTCTCAGCTATTTGAT+TGG | - | chr6_3:15827218-15827237 | Msa0941820:CDS | 30.0% |
| ! | GACTCTTTGAAGAAGTTTAA+AGG | - | chr6_3:15827771-15827790 | Msa0941820:CDS | 30.0% |
| ATAAGCAACTACCTAAAAGA+AGG | + | chr6_3:15828052-15828071 | None:intergenic | 30.0% | |
| ! | GATTTATCTCTCTTTGAAGA+TGG | + | chr6_3:15828247-15828266 | None:intergenic | 30.0% |
| !! | TCATTTTCTGATAGTGATGA+TGG | - | chr6_3:15828277-15828296 | Msa0941820:intron | 30.0% |
| AAACAAGTTTATTAGCGTGA+TGG | + | chr6_3:15828477-15828496 | None:intergenic | 30.0% | |
| ! | GATTGATTCTGTATATCTTG+TGG | + | chr6_3:15828688-15828707 | None:intergenic | 30.0% |
| ! | ACTACATCATTTTCATGAGA+CGG | + | chr6_3:15828862-15828881 | None:intergenic | 30.0% |
| !! | TGTTCGAGTTTTATGTTTGA+AGG | + | chr6_3:15829049-15829068 | None:intergenic | 30.0% |
| ATAAAACTCGAACACAAGAA+GGG | - | chr6_3:15829055-15829074 | Msa0941820:CDS | 30.0% | |
| AGTGGAAATAAAGACTTTGT+TGG | - | chr6_3:15829168-15829187 | Msa0941820:CDS | 30.0% | |
| GATGCAAATTTGATCTAGAA+AGG | - | chr6_3:15829247-15829266 | Msa0941820:CDS | 30.0% | |
| AATGTCAAATGTAAAAGAGG+AGG | - | chr6_3:15829348-15829367 | Msa0941820:CDS | 30.0% | |
| TAACGACAATAAGATGAACA+AGG | - | chr6_3:15829392-15829411 | Msa0941820:CDS | 30.0% | |
| ! | TTTCTTTAGAGGTGAACTAA+AGG | + | chr6_3:15829430-15829449 | None:intergenic | 30.0% |
| ! | TAGTTCACCTCTAAAGAAAA+AGG | - | chr6_3:15829431-15829450 | Msa0941820:CDS | 30.0% |
| AACAGAAGCTGAAAGAATTA+AGG | - | chr6_3:15829541-15829560 | Msa0941820:CDS | 30.0% | |
| ATTAAGGTCTAGAGAAAATG+CGG | - | chr6_3:15829557-15829576 | Msa0941820:CDS | 30.0% | |
| AATTCTTGAAGAATCAATGC+AGG | + | chr6_3:15829615-15829634 | None:intergenic | 30.0% | |
| TTTGATCATTGGAACATGTT+AGG | + | chr6_3:15829662-15829681 | None:intergenic | 30.0% | |
| GCCATTAAACATTTGATCAT+TGG | + | chr6_3:15829673-15829692 | None:intergenic | 30.0% | |
| ATAGAAAGAGAAAATGCACA+TGG | + | chr6_3:15829716-15829735 | None:intergenic | 30.0% | |
| CATATGTTGGATATTCGTTA+TGG | - | chr6_3:15829881-15829900 | Msa0941820:CDS | 30.0% | |
| TATGTTGGATATTCGTTATG+GGG | - | chr6_3:15829883-15829902 | Msa0941820:CDS | 30.0% | |
| ATTTAAGCTTGTACTTTGGT+TGG | - | chr6_3:15830116-15830135 | Msa0941820:intron | 30.0% | |
| ACAAATCCTGTTGGATTATT+CGG | - | chr6_3:15830196-15830215 | Msa0941820:intron | 30.0% | |
| ATCAAAGACATTAAAACGAG+AGG | + | chr6_3:15830352-15830371 | None:intergenic | 30.0% | |
| TTGATCTTCAATTTGATTCC+AGG | - | chr6_3:15830367-15830386 | Msa0941820:intron | 30.0% | |
| TGATCTTCAATTTGATTCCA+GGG | - | chr6_3:15830368-15830387 | Msa0941820:intron | 30.0% | |
| TCATTTAACACAGGAAAGAT+AGG | - | chr6_3:15830466-15830485 | Msa0941820:intron | 30.0% | |
| ATCAATTCGGTAAACAAGTT+TGG | + | chr6_3:15830506-15830525 | None:intergenic | 30.0% | |
| AGTTATCTTCATTGCTGAAT+TGG | - | chr6_3:15830594-15830613 | Msa0941820:intron | 30.0% | |
| AATTGCTGCCACAATTATTA+TGG | - | chr6_3:15830787-15830806 | Msa0941820:intron | 30.0% | |
| ATTATGGTGTGTTTAAGTCA+TGG | - | chr6_3:15830803-15830822 | Msa0941820:intron | 30.0% | |
| TCATCTCCCAATCAATTATT+TGG | + | chr6_3:15830933-15830952 | None:intergenic | 30.0% | |
| AAAAGCTTCAATGTCGAAAT+CGG | + | chr6_3:15830977-15830996 | None:intergenic | 30.0% | |
| CAGCTATTTGATTGGAATAG+TGG | - | chr6_3:15827226-15827245 | Msa0941820:CDS | 35.0% | |
| TAGATTAGAAGAGACTAACC+AGG | + | chr6_3:15827295-15827314 | None:intergenic | 35.0% | |
| TTCATAGTATCACACACTTG+AGG | - | chr6_3:15827497-15827516 | Msa0941820:CDS | 35.0% | |
| ! | GAGGGTCTTATACAAATTTG+TGG | - | chr6_3:15827691-15827710 | Msa0941820:CDS | 35.0% |
| !!! | AGTTTTCTTTGGTGTTGACA+CGG | - | chr6_3:15827835-15827854 | Msa0941820:intron | 35.0% |
| ACAGTCTGATCTTGATTCAA+TGG | + | chr6_3:15827901-15827920 | None:intergenic | 35.0% | |
| TAGATTGCTAATGGGAATAG+TGG | - | chr6_3:15828112-15828131 | Msa0941820:intron | 35.0% | |
| !!! | GCTACTAAGATTTTAGAACC+TGG | - | chr6_3:15828565-15828584 | Msa0941820:CDS | 35.0% |
| GGAAGATGCAAGAAAACATT+TGG | + | chr6_3:15828611-15828630 | None:intergenic | 35.0% | |
| ! | ATTGGTAGGACACTTTGAAA+TGG | + | chr6_3:15828632-15828651 | None:intergenic | 35.0% |
| ! | TCAAAGTGTCCTACCAATAA+CGG | - | chr6_3:15828634-15828653 | Msa0941820:CDS | 35.0% |
| ! | GCGAAAACATCTGAAACAAT+AGG | + | chr6_3:15828796-15828815 | None:intergenic | 35.0% |
| ! | CACATATATTCTTCTGGAAG+TGG | + | chr6_3:15828959-15828978 | None:intergenic | 35.0% |
| TGCAAGCACATATATTCTTC+TGG | + | chr6_3:15828965-15828984 | None:intergenic | 35.0% | |
| CATAAAACTCGAACACAAGA+AGG | - | chr6_3:15829054-15829073 | Msa0941820:CDS | 35.0% | |
| ! | GTCTCTTCCTTTTTCTTTAG+AGG | + | chr6_3:15829441-15829460 | None:intergenic | 35.0% |
| ACCTAAAACATCTTCTCTCA+GGG | + | chr6_3:15829511-15829530 | None:intergenic | 35.0% | |
| ! | ATCAATGCAGGTGATCTTTT+AGG | + | chr6_3:15829603-15829622 | None:intergenic | 35.0% |
| TGGTCCTACAAATCATATGT+TGG | - | chr6_3:15829868-15829887 | Msa0941820:CDS | 35.0% | |
| ATGTTGGATATTCGTTATGG+GGG | - | chr6_3:15829884-15829903 | Msa0941820:CDS | 35.0% | |
| CCATACATGCTTTCAATCTA+AGG | + | chr6_3:15829912-15829931 | None:intergenic | 35.0% | |
| ! | CCTTAGATTGAAAGCATGTA+TGG | - | chr6_3:15829909-15829928 | Msa0941820:CDS | 35.0% |
| ! | TCAATGTATTGATGGCATGT+CGG | + | chr6_3:15829938-15829957 | None:intergenic | 35.0% |
| GTCAGTATTAATGTTGTGCT+TGG | - | chr6_3:15830006-15830025 | Msa0941820:CDS | 35.0% | |
| GAGTATAAGCAAAAGCTCTT+CGG | + | chr6_3:15830061-15830080 | None:intergenic | 35.0% | |
| ATCAAGACTACTGGAAGAAA+AGG | + | chr6_3:15830272-15830291 | None:intergenic | 35.0% | |
| ! | TTCATTGCTGAATTGGTTCT+TGG | - | chr6_3:15830601-15830620 | Msa0941820:intron | 35.0% |
| AAATGTCACTAGGAACAATG+AGG | - | chr6_3:15830624-15830643 | Msa0941820:intron | 35.0% | |
| TTTCAATCGAAGCCAACTTA+AGG | - | chr6_3:15830726-15830745 | Msa0941820:intron | 35.0% | |
| TTCAATCGAAGCCAACTTAA+GGG | - | chr6_3:15830727-15830746 | Msa0941820:intron | 35.0% | |
| CGAATAGAAATCCCTTAAGT+TGG | + | chr6_3:15830741-15830760 | None:intergenic | 35.0% | |
| ATCTCAGCTTTCTTGCATAA+AGG | + | chr6_3:15830847-15830866 | None:intergenic | 35.0% | |
| ! | ATGCAAGAAAGCTGAGATTT+TGG | - | chr6_3:15830849-15830868 | Msa0941820:intron | 35.0% |
| TCAAGAGTGAGATTAAGAAG+TGG | - | chr6_3:15830881-15830900 | Msa0941820:intron | 35.0% | |
| CAAGAGTGAGATTAAGAAGT+GGG | - | chr6_3:15830882-15830901 | Msa0941820:intron | 35.0% | |
| GATTAAGAAGTGGGAATGTA+TGG | - | chr6_3:15830891-15830910 | Msa0941820:intron | 35.0% | |
| TGAGTCACTCATTAGGAAAA+TGG | - | chr6_3:15830950-15830969 | Msa0941820:CDS | 35.0% | |
| ! | TTTCGACATTGAAGCTTTTG+AGG | - | chr6_3:15830978-15830997 | Msa0941820:CDS | 35.0% |
| ! | TGAGGATGTGCTTCAAATTT+TGG | - | chr6_3:15831017-15831036 | Msa0941820:CDS | 35.0% |
| ! | GATCTTGTAGATTTTAGGCT+TGG | - | chr6_3:15831057-15831076 | Msa0941820:CDS | 35.0% |
| ! | AGTGATGATGCTAGTGTGAA+TGG | - | chr6_3:15827130-15827149 | Msa0941820:CDS | 40.0% |
| ! | AAGATAGGTGGTGGTTGTAT+TGG | - | chr6_3:15827193-15827212 | Msa0941820:CDS | 40.0% |
| !!! | AGGAGGAGGAAGAAGTTTTT+TGG | + | chr6_3:15827275-15827294 | None:intergenic | 40.0% |
| AAAAAACTTCTTCCTCCTCC+TGG | - | chr6_3:15827274-15827293 | Msa0941820:CDS | 40.0% | |
| ATTAGAAGAGACTAACCAGG+AGG | + | chr6_3:15827292-15827311 | None:intergenic | 40.0% | |
| !! | TATATGTGTTGGTGTCGTGT+CGG | - | chr6_3:15827418-15827437 | Msa0941820:CDS | 40.0% |
| TATGAAGCACGTACACTTCT+CGG | + | chr6_3:15827483-15827502 | None:intergenic | 40.0% | |
| TAGTATCACACACTTGAGGT+TGG | - | chr6_3:15827501-15827520 | Msa0941820:CDS | 40.0% | |
| !! | TGGAAACTGATGAGAGTGTT+TGG | - | chr6_3:15827711-15827730 | Msa0941820:CDS | 40.0% |
| ACAAAGTCCACGTATTCACA+CGG | - | chr6_3:15827860-15827879 | Msa0941820:intron | 40.0% | |
| ATAGACTGTTCGAACTTGAC+CGG | - | chr6_3:15827975-15827994 | Msa0941820:CDS | 40.0% | |
| ATTGCTAATGGGAATAGTGG+AGG | - | chr6_3:15828115-15828134 | Msa0941820:intron | 40.0% | |
| AAGTGGGAATTGTGCTATAG+AGG | - | chr6_3:15828156-15828175 | Msa0941820:intron | 40.0% | |
| ATCAACCTAGCTACAAGACT+TGG | + | chr6_3:15828208-15828227 | None:intergenic | 40.0% | |
| ! | AAGTCTTGTAGCTAGGTTGA+TGG | - | chr6_3:15828207-15828226 | Msa0941820:intron | 40.0% |
| !! | AGTCTTGTAGCTAGGTTGAT+GGG | - | chr6_3:15828208-15828227 | Msa0941820:intron | 40.0% |
| !! | TTCTGATAGTGATGATGGTG+AGG | - | chr6_3:15828282-15828301 | Msa0941820:intron | 40.0% |
| ! | GTGTTTTGTCACAAGTGAGA+AGG | - | chr6_3:15828428-15828447 | Msa0941820:intron | 40.0% |
| GAAATTCTCGGACTCTTCAA+AGG | + | chr6_3:15828502-15828521 | None:intergenic | 40.0% | |
| GAAGAGTCCGAGAATTTCTT+CGG | - | chr6_3:15828504-15828523 | Msa0941820:intron | 40.0% | |
| AAGAGTCCGAGAATTTCTTC+GGG | - | chr6_3:15828505-15828524 | Msa0941820:intron | 40.0% | |
| CTCTTTCCCGAAGAAATTCT+CGG | + | chr6_3:15828514-15828533 | None:intergenic | 40.0% | |
| !!! | GATTTTAGAACCTGGTTTGC+AGG | - | chr6_3:15828573-15828592 | Msa0941820:CDS | 40.0% |
| TTCTGTCACAATGCCGTTAT+TGG | + | chr6_3:15828650-15828669 | None:intergenic | 40.0% | |
| TAACGGCATTGTGACAGAAA+TGG | - | chr6_3:15828651-15828670 | Msa0941820:CDS | 40.0% | |
| TTCTGGCATAGACAAGTCAT+TGG | - | chr6_3:15828717-15828736 | Msa0941820:CDS | 40.0% | |
| TCTGGCATAGACAAGTCATT+GGG | - | chr6_3:15828718-15828737 | Msa0941820:CDS | 40.0% | |
| GAGCATACGTGCAAAAATTG+CGG | - | chr6_3:15828742-15828761 | Msa0941820:CDS | 40.0% | |
| CATGAGTTATGATCTTCTCC+TGG | + | chr6_3:15828897-15828916 | None:intergenic | 40.0% | |
| GGTTTGAATCAAAGCCTAAG+TGG | - | chr6_3:15829189-15829208 | Msa0941820:CDS | 40.0% | |
| TTATCTGAGTTCGACCACTT+AGG | + | chr6_3:15829206-15829225 | None:intergenic | 40.0% | |
| TAAGTGGTCGAACTCAGATA+AGG | - | chr6_3:15829205-15829224 | Msa0941820:CDS | 40.0% | |
| TCAGATAAGGTCTCCTACTA+AGG | - | chr6_3:15829218-15829237 | Msa0941820:CDS | 40.0% | |
| TTGCATCTATCTGCCTTAGT+AGG | + | chr6_3:15829234-15829253 | None:intergenic | 40.0% | |
| CTGATGCACAAGGAGAAAAA+AGG | - | chr6_3:15829292-15829311 | Msa0941820:CDS | 40.0% | |
| AGAGGTGAACTAAAGGAAGA+TGG | + | chr6_3:15829423-15829442 | None:intergenic | 40.0% | |
| CCTAAAACATCTTCTCTCAG+GGG | + | chr6_3:15829510-15829529 | None:intergenic | 40.0% | |
| CACCTAAAACATCTTCTCTC+AGG | + | chr6_3:15829512-15829531 | None:intergenic | 40.0% | |
| GTTTAATGGCAAATGTCCCA+AGG | - | chr6_3:15829683-15829702 | Msa0941820:CDS | 40.0% | |
| !! | GACATCGTACCTTGTTTCTA+CGG | - | chr6_3:15830160-15830179 | Msa0941820:intron | 40.0% |
| CACTGATATCCGTAGAAACA+AGG | + | chr6_3:15830172-15830191 | None:intergenic | 40.0% | |
| AATGGTAATCATCTCAGTCC+TGG | - | chr6_3:15830229-15830248 | Msa0941820:intron | 40.0% | |
| ! | TCTTCCAGTAGTCTTGATGA+AGG | - | chr6_3:15830274-15830293 | Msa0941820:intron | 40.0% |
| GCTCTATAAACCAACCTGAA+CGG | - | chr6_3:15830407-15830426 | Msa0941820:intron | 40.0% | |
| TCCTGTGTTAAATGATGCTG+CGG | + | chr6_3:15830461-15830480 | None:intergenic | 40.0% | |
| TGGTTCTTGGAAATGTCACT+AGG | - | chr6_3:15830614-15830633 | Msa0941820:intron | 40.0% | |
| ATGCAAGAAATGAGAAGCTG+TGG | + | chr6_3:15830661-15830680 | None:intergenic | 40.0% | |
| !!! | AGCTGAGATTTTGGTTCAAG+AGG | - | chr6_3:15830858-15830877 | Msa0941820:intron | 40.0% |
| AAGAAGTGGGAATGTATGGT+TGG | - | chr6_3:15830895-15830914 | Msa0941820:intron | 40.0% | |
| !! | TTTGAGGCAGGTGTTGATAT+TGG | - | chr6_3:15830994-15831013 | Msa0941820:CDS | 40.0% |
| ACGGATACAGACACAGACAT+TGG | - | chr6_3:15827374-15827393 | Msa0941820:CDS | 45.0% | |
| TTCTCGGATTTGACGTGTTC+CGG | + | chr6_3:15827467-15827486 | None:intergenic | 45.0% | |
| TATTCACACGGTCAGCACTT+CGG | - | chr6_3:15827872-15827891 | Msa0941820:intron | 45.0% | |
| ! | AAGCACCAAGTCTTGTAGCT+AGG | - | chr6_3:15828200-15828219 | Msa0941820:intron | 45.0% |
| !! | TGATGATGGTGAGGAGTCTT+TGG | - | chr6_3:15828291-15828310 | Msa0941820:intron | 45.0% |
| AGATCAAAGCTGCGAATGCA+AGG | - | chr6_3:15828314-15828333 | Msa0941820:intron | 45.0% | |
| AGAGTACATCTCGAAGCTCA+AGG | - | chr6_3:15828530-15828549 | Msa0941820:CDS | 45.0% | |
| GTCACAATGCCGTTATTGGT+AGG | + | chr6_3:15828646-15828665 | None:intergenic | 45.0% | |
| TGACAGAAATGGCTGGAACT+CGG | - | chr6_3:15828662-15828681 | Msa0941820:CDS | 45.0% | |
| CTGGCATAGACAAGTCATTG+GGG | - | chr6_3:15828719-15828738 | Msa0941820:CDS | 45.0% | |
| TGGCATAGACAAGTCATTGG+GGG | - | chr6_3:15828720-15828739 | Msa0941820:CDS | 45.0% | |
| TGTAGTTCTTCTCAGAAGCC+AGG | - | chr6_3:15828876-15828895 | Msa0941820:CDS | 45.0% | |
| ! | ACAACTTCAAGCACTGTGAG+TGG | - | chr6_3:15829150-15829169 | Msa0941820:CDS | 45.0% |
| AGGAAACCTTCAAGCAGACA+AGG | - | chr6_3:15829267-15829286 | Msa0941820:CDS | 45.0% | |
| TCAGAACCTTGTCTGCTTGA+AGG | + | chr6_3:15829276-15829295 | None:intergenic | 45.0% | |
| ! | AGACAAGGTTCTGATGCACA+AGG | - | chr6_3:15829282-15829301 | Msa0941820:CDS | 45.0% |
| ! | CCCCTGAGAGAAGATGTTTT+AGG | - | chr6_3:15829507-15829526 | Msa0941820:CDS | 45.0% |
| GTCTAGAGAAAATGCGGAGT+TGG | - | chr6_3:15829563-15829582 | Msa0941820:CDS | 45.0% | |
| ! | GAAAATGCGGAGTTGGTTAC+TGG | - | chr6_3:15829570-15829589 | Msa0941820:CDS | 45.0% |
| AATGGCAAATGTCCCAAGGT+TGG | - | chr6_3:15829687-15829706 | Msa0941820:CDS | 45.0% | |
| TGCACATGGAAACCAACCTT+GGG | + | chr6_3:15829702-15829721 | None:intergenic | 45.0% | |
| ATGCACATGGAAACCAACCT+TGG | + | chr6_3:15829703-15829722 | None:intergenic | 45.0% | |
| TAAGCTACGAACCACCAACA+CGG | + | chr6_3:15830035-15830054 | None:intergenic | 45.0% | |
| CAGTGTGAGACAAATCCTGT+TGG | - | chr6_3:15830187-15830206 | Msa0941820:intron | 45.0% | |
| GAGGTTCCGAATAATCCAAC+AGG | + | chr6_3:15830205-15830224 | None:intergenic | 45.0% | |
| TTATTCGGAACCTCGTGCAA+TGG | - | chr6_3:15830211-15830230 | Msa0941820:intron | 45.0% | |
| GAGATGATTACCATTGCACG+AGG | + | chr6_3:15830224-15830243 | None:intergenic | 45.0% | |
| TGAGCCTTCATCAAGACTAC+TGG | + | chr6_3:15830281-15830300 | None:intergenic | 45.0% | |
| ! | AGTAGTCTTGATGAAGGCTC+AGG | - | chr6_3:15830280-15830299 | Msa0941820:intron | 45.0% |
| !! | CAGGTTGGTTTATAGAGCCA+GGG | + | chr6_3:15830405-15830424 | None:intergenic | 45.0% |
| !! | TCAGGTTGGTTTATAGAGCC+AGG | + | chr6_3:15830406-15830425 | None:intergenic | 45.0% |
| CATGTTTCAACCGTTCAGGT+TGG | + | chr6_3:15830420-15830439 | None:intergenic | 45.0% | |
| CCTTCATGTTTCAACCGTTC+AGG | + | chr6_3:15830424-15830443 | None:intergenic | 45.0% | |
| CCTGAACGGTTGAAACATGA+AGG | - | chr6_3:15830421-15830440 | Msa0941820:intron | 45.0% | |
| TCCGCAGCATCATTTAACAC+AGG | - | chr6_3:15830457-15830476 | Msa0941820:intron | 45.0% | |
| GTCACTAGGAACAATGAGGA+AGG | - | chr6_3:15830628-15830647 | Msa0941820:intron | 45.0% | |
| TGGGAGATGAGTCACTCATT+AGG | - | chr6_3:15830943-15830962 | Msa0941820:CDS | 45.0% | |
| !!! | GACATTGAAGCTTTTGAGGC+AGG | - | chr6_3:15830982-15831001 | Msa0941820:CDS | 45.0% |
| AGAAGAGACTAACCAGGAGG+AGG | + | chr6_3:15827289-15827308 | None:intergenic | 50.0% | |
| CGAATGCAAGGCATGAGTCA+AGG | - | chr6_3:15828326-15828345 | Msa0941820:intron | 50.0% | |
| AGTCAAGGCCTCAGAAGCTT+CGG | - | chr6_3:15828341-15828360 | Msa0941820:intron | 50.0% | |
| GCCTCAGAAGCTTCGGAAAA+CGG | - | chr6_3:15828348-15828367 | Msa0941820:intron | 50.0% | |
| ! | TCCGTTTTCCGAAGCTTCTG+AGG | + | chr6_3:15828352-15828371 | None:intergenic | 50.0% |
| TCAGAAGCTTCGGAAAACGG+AGG | - | chr6_3:15828351-15828370 | Msa0941820:intron | 50.0% | |
| AGAAGGGCAGTGACTAGGTT+TGG | - | chr6_3:15828382-15828401 | Msa0941820:intron | 50.0% | |
| CTGTTTGTAGCCTGCAAACC+AGG | + | chr6_3:15828586-15828605 | None:intergenic | 50.0% | |
| GGCATTGTGACAGAAATGGC+TGG | - | chr6_3:15828655-15828674 | Msa0941820:CDS | 50.0% | |
| TCATCCTCTAAGCCTCCATG+CGG | + | chr6_3:15829009-15829028 | None:intergenic | 50.0% | |
| CATGGAGGCTTAGAGGATGA+TGG | - | chr6_3:15829009-15829028 | Msa0941820:CDS | 50.0% | |
| TCAGGGGTCGATGATGTCTT+TGG | + | chr6_3:15829494-15829513 | None:intergenic | 50.0% | |
| TCTCAGTCCTGGATCAGTCT+TGG | - | chr6_3:15830240-15830259 | Msa0941820:intron | 50.0% | |
| GAAGCTTCCAAGACTGATCC+AGG | + | chr6_3:15830250-15830269 | None:intergenic | 50.0% | |
| AAGACTGACAGAGAGCAAGC+TGG | - | chr6_3:15830558-15830577 | Msa0941820:intron | 50.0% | |
| GTCATGGTGTGCATGCACAA+AGG | - | chr6_3:15830819-15830838 | Msa0941820:intron | 50.0% | |
| GTGGGAATGTATGGTTGGCA+TGG | - | chr6_3:15830900-15830919 | Msa0941820:intron | 50.0% | |
| !! | GGCAGGTGTTGATATTGGTG+AGG | - | chr6_3:15830999-15831018 | Msa0941820:CDS | 50.0% |
| AGACACGTACGTGTCTGCAC+CGG | - | chr6_3:15827445-15827464 | Msa0941820:CDS | 55.0% | |
| ! | GTGCTGACCGTGTGAATACG+TGG | + | chr6_3:15827870-15827889 | None:intergenic | 55.0% |
| GACTGTTCGAACTTGACCGG+CGG | - | chr6_3:15827978-15827997 | Msa0941820:CDS | 55.0% | |
| AAACGGAGGCGAACGAGAGA+AGG | - | chr6_3:15828365-15828384 | Msa0941820:intron | 55.0% | |
| AACGGAGGCGAACGAGAGAA+GGG | - | chr6_3:15828366-15828385 | Msa0941820:intron | 55.0% | |
| ACGAGAGAAGGGCAGTGACT+AGG | - | chr6_3:15828377-15828396 | Msa0941820:intron | 55.0% | |
| GATTCATCGCGCAAACCGCA+TGG | - | chr6_3:15828991-15829010 | Msa0941820:CDS | 55.0% | |
| CAAACCGCATGGAGGCTTAG+AGG | - | chr6_3:15829002-15829021 | Msa0941820:CDS | 55.0% | |
| !! | GTTGTGCTTGGTGTCCGTGT+TGG | - | chr6_3:15830018-15830037 | Msa0941820:CDS | 55.0% |
| CCAGGGTGAAAACAATGCCC+TGG | + | chr6_3:15830388-15830407 | None:intergenic | 55.0% | |
| !!! | CCAGGGCATTGTTTTCACCC+TGG | - | chr6_3:15830385-15830404 | Msa0941820:intron | 55.0% |
| GTCAGCACATCAGAAGCCGC+CGG | + | chr6_3:15827997-15828016 | None:intergenic | 60.0% | |
| TCATCGCGCAAACCGCATGG+AGG | - | chr6_3:15828994-15829013 | Msa0941820:CDS | 60.0% | |
| !! | GTGCTTGGTGTCCGTGTTGG+TGG | - | chr6_3:15830021-15830040 | Msa0941820:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 15827127 | 15831089 | 15827127 | ID=Msa0941820;Name=Msa0941820 |
| chr6_3 | mRNA | 15827127 | 15831089 | 15827127 | ID=Msa0941820-mRNA-1;Parent=Msa0941820;Name=Msa0941820-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0.5|0.2|0.8|0.5|0.8|5|0|858 |
| chr6_3 | exon | 15830921 | 15831089 | 15830921 | ID=Msa0941820-mRNA-1:exon:4880;Parent=Msa0941820-mRNA-1 |
| chr6_3 | exon | 15830455 | 15830459 | 15830455 | ID=Msa0941820-mRNA-1:exon:4879;Parent=Msa0941820-mRNA-1 |
| chr6_3 | exon | 15828512 | 15830101 | 15828512 | ID=Msa0941820-mRNA-1:exon:4878;Parent=Msa0941820-mRNA-1 |
| chr6_3 | exon | 15827915 | 15828026 | 15827915 | ID=Msa0941820-mRNA-1:exon:4877;Parent=Msa0941820-mRNA-1 |
| chr6_3 | exon | 15827127 | 15827827 | 15827127 | ID=Msa0941820-mRNA-1:exon:4876;Parent=Msa0941820-mRNA-1 |
| chr6_3 | CDS | 15830921 | 15831089 | 15830921 | ID=Msa0941820-mRNA-1:cds;Parent=Msa0941820-mRNA-1 |
| chr6_3 | CDS | 15830455 | 15830459 | 15830455 | ID=Msa0941820-mRNA-1:cds;Parent=Msa0941820-mRNA-1 |
| chr6_3 | CDS | 15828512 | 15830101 | 15828512 | ID=Msa0941820-mRNA-1:cds;Parent=Msa0941820-mRNA-1 |
| chr6_3 | CDS | 15827915 | 15828026 | 15827915 | ID=Msa0941820-mRNA-1:cds;Parent=Msa0941820-mRNA-1 |
| chr6_3 | CDS | 15827127 | 15827827 | 15827127 | ID=Msa0941820-mRNA-1:cds;Parent=Msa0941820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
