Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0519020 | XP_003602749.1 | 98.450 | 516 | 7 | 1 | 2 | 517 | 3 | 517 | 0.0 | 1041 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0519020 | G7J399 | 98.450 | 516 | 7 | 1 | 2 | 517 | 3 | 517 | 0.0 | 1041 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0229920 | Msa0519020 | 0.804151 | 2.479296e-49 | -8.615850e-47 |
| Msa0379260 | Msa0519020 | 0.881315 | 2.658217e-70 | -8.615850e-47 |
| Msa0436200 | Msa0519020 | 0.819978 | 8.741568e-53 | -8.615850e-47 |
| Msa0467220 | Msa0519020 | 0.800392 | 1.472329e-48 | -8.615850e-47 |
| Msa0518930 | Msa0519020 | 0.800068 | 1.714264e-48 | -8.615850e-47 |
| Msa0519020 | Msa0524590 | 0.828983 | 6.635727e-55 | -8.615850e-47 |
| Msa0519020 | Msa0705990 | 0.800976 | 1.119542e-48 | -8.615850e-47 |
| Msa0519020 | Msa0879850 | 0.833334 | 5.662587e-56 | -8.615850e-47 |
| Msa0519020 | Msa0944660 | 0.800812 | 1.209172e-48 | -8.615850e-47 |
| Msa0519020 | Msa1088290 | 0.805128 | 1.550153e-49 | -8.615850e-47 |
| Msa0519020 | Msa1407970 | 0.885835 | 5.769672e-72 | -8.615850e-47 |
| Msa0519020 | Msa1426570 | 0.801062 | 1.074697e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0519020 | MtrunA17_Chr3g0131621 | 98.450 | 516 | 7 | 1 | 2 | 517 | 3 | 517 | 0.0 | 1041 |
| Msa0519020 | MtrunA17_Chr8g0385711 | 55.357 | 504 | 193 | 5 | 11 | 513 | 35 | 507 | 0.0 | 550 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0519020 | AT5G50970.1 | 61.373 | 510 | 174 | 8 | 7 | 515 | 24 | 511 | 0.0 | 613 |
| Msa0519020 | AT5G19920.1 | 56.983 | 358 | 154 | 0 | 158 | 515 | 298 | 655 | 6.61e-147 | 436 |
Find 119 sgRNAs with CRISPR-Local
Find 354 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATGAACTCTTGCGTATTAA+AGG | 0.118944 | 3_4:-70949791 | None:intergenic |
| AGTAAAGAAAAGAATTTATT+TGG | 0.151676 | 3_4:+70953527 | Msa0519020:three_prime_UTR |
| CGGACAGAACTTCATGCTTT+TGG | 0.187053 | 3_4:+70953120 | Msa0519020:CDS |
| TTTATTTGGAACGGTAAATT+AGG | 0.206467 | 3_4:+70953541 | Msa0519020:three_prime_UTR |
| GGTCGACTTCAACTTGTTTA+TGG | 0.210939 | 3_4:+70952088 | Msa0519020:CDS |
| GGTGCAGACAGGAGAATATT+TGG | 0.214846 | 3_4:+70951990 | Msa0519020:CDS |
| ACAAATTGGAATAAAATTAA+AGG | 0.221064 | 3_4:+70951620 | Msa0519020:CDS |
| GAAAATCATTAATTGCAATT+TGG | 0.221881 | 3_4:+70953665 | Msa0519020:three_prime_UTR |
| CACAAATATCAGTTACAAAT+TGG | 0.251917 | 3_4:+70951606 | Msa0519020:CDS |
| TGGATGGATTGGTCAACTTC+TGG | 0.282759 | 3_4:+70950672 | Msa0519020:CDS |
| TAATGAAATAATAGAGAAAA+TGG | 0.305613 | 3_4:+70948102 | Msa0519020:exon |
| TCTGCTGTCATGGGTGTTGC+TGG | 0.313002 | 3_4:+70951936 | Msa0519020:CDS |
| CCCGATGACCGTGAAATCTT+CGG | 0.326249 | 3_4:-70948559 | None:intergenic |
| AAAAGAGCCTGTTTCCTTCC+GGG | 0.332486 | 3_4:-70951556 | None:intergenic |
| CAAATTGGAATAAAATTAAA+GGG | 0.340540 | 3_4:+70951621 | Msa0519020:CDS |
| GTTCATACTTCTTCGGTTAG+TGG | 0.345619 | 3_4:+70948616 | Msa0519020:CDS |
| GCTCACCAGAAAAGAGTCTT+TGG | 0.350080 | 3_4:+70953294 | Msa0519020:CDS |
| AACTTGTTTATGGTTCAAAC+AGG | 0.350438 | 3_4:+70952098 | Msa0519020:CDS |
| ATATAAGATATAATCTTAAC+AGG | 0.350592 | 3_4:+70953253 | Msa0519020:CDS |
| TCTTCATTCTTCTGCTGTCA+TGG | 0.353380 | 3_4:+70951926 | Msa0519020:CDS |
| GAAAAGAGCCTGTTTCCTTC+CGG | 0.362118 | 3_4:-70951557 | None:intergenic |
| GAACGTTCATTCCTATCAAT+TGG | 0.370380 | 3_4:-70948484 | None:intergenic |
| ACCTCGAAGACGAGCCAGTT+TGG | 0.373854 | 3_4:-70948380 | None:intergenic |
| TTGAAATGTGGTTGCTTGAT+TGG | 0.376059 | 3_4:-70949832 | None:intergenic |
| ACAGAACACTTTACTTCATC+AGG | 0.377058 | 3_4:-70953386 | None:intergenic |
| AACTCAGATGATGATGATAA+TGG | 0.377955 | 3_4:+70948424 | Msa0519020:CDS |
| CTTGGCACCCGGAAGGAAAC+AGG | 0.393450 | 3_4:+70951549 | Msa0519020:CDS |
| ACCGAAGATTTCACGGTCAT+CGG | 0.397677 | 3_4:+70948558 | Msa0519020:CDS |
| TTGGGAGTGTTGCAGTGCTT+TGG | 0.401238 | 3_4:+70950652 | Msa0519020:intron |
| AGAGGACAAGCCCCATGTTA+AGG | 0.404493 | 3_4:+70951770 | Msa0519020:CDS |
| GTGCAGACAGGAGAATATTT+GGG | 0.405675 | 3_4:+70951991 | Msa0519020:CDS |
| GGCTACAACGACAAATTAGA+TGG | 0.408918 | 3_4:-70953619 | None:intergenic |
| GATCGAATAGTCCAATTGAT+AGG | 0.414202 | 3_4:+70948473 | Msa0519020:CDS |
| AAGTTGAAGTCGACCGGATT+GGG | 0.417117 | 3_4:-70952080 | None:intergenic |
| TCAATCAGCTCTGATTAATC+AGG | 0.417753 | 3_4:+70953167 | Msa0519020:CDS |
| GAGGACAAGCCCCATGTTAA+GGG | 0.422318 | 3_4:+70951771 | Msa0519020:CDS |
| GATGGTCTTTATATAACATC+TGG | 0.422463 | 3_4:+70953201 | Msa0519020:CDS |
| GTATTAAAGGAATCAATTCC+TGG | 0.423259 | 3_4:-70949778 | None:intergenic |
| ATGTTGAAGGGAAGGATAAA+GGG | 0.424142 | 3_4:+70948674 | Msa0519020:CDS |
| AATGTTGAAGGGAAGGATAA+AGG | 0.425677 | 3_4:+70948673 | Msa0519020:CDS |
| CTTCATTCTTCTGCTGTCAT+GGG | 0.430235 | 3_4:+70951927 | Msa0519020:CDS |
| CTGTTACACCGAAGATTTCA+CGG | 0.435935 | 3_4:+70948551 | Msa0519020:CDS |
| AGATTCCTGTGCAATGGTCT+TGG | 0.436295 | 3_4:-70951906 | None:intergenic |
| GGGTGCCAAGCTATATCTTC+TGG | 0.437830 | 3_4:-70951536 | None:intergenic |
| CCGAAGATTTCACGGTCATC+GGG | 0.440560 | 3_4:+70948559 | Msa0519020:CDS |
| TTCTGTCTCCATCCTTCTGT+TGG | 0.442802 | 3_4:+70953403 | Msa0519020:three_prime_UTR |
| TCCAAACTGGCTCGTCTTCG+AGG | 0.450756 | 3_4:+70948379 | Msa0519020:CDS |
| TCTGAATAGCACGTTCTAAC+GGG | 0.455006 | 3_4:-70948028 | None:intergenic |
| TCAGTATATACTGCTGATAG+TGG | 0.456056 | 3_4:+70951578 | Msa0519020:CDS |
| CATTGATAATTCCCTTAACA+TGG | 0.459099 | 3_4:-70951782 | None:intergenic |
| TTGCAGTGCTTTGGATGGAT+TGG | 0.459655 | 3_4:+70950661 | Msa0519020:intron |
| CATGAGTGTCGTTCCCAATC+CGG | 0.470143 | 3_4:+70952067 | Msa0519020:CDS |
| AAAAGATTCAGAATCCAAAC+TGG | 0.471223 | 3_4:+70948366 | Msa0519020:CDS |
| CAAGTTGAAGTCGACCGGAT+TGG | 0.472849 | 3_4:-70952081 | None:intergenic |
| TCAGGGCATACCCTTTGGCT+TGG | 0.473021 | 3_4:-70950700 | None:intergenic |
| ATTTCACGGTCATCGGGAAA+AGG | 0.477985 | 3_4:+70948565 | Msa0519020:CDS |
| AGCAGGATGATGAGGACAAA+TGG | 0.478363 | 3_4:+70951880 | Msa0519020:CDS |
| ATAGATCAGCAAAATGTTGA+AGG | 0.478843 | 3_4:+70948661 | Msa0519020:CDS |
| TTCGTCGGTTCATACTTCTT+CGG | 0.481807 | 3_4:+70948609 | Msa0519020:CDS |
| GATGTTATATAAAGACCATC+AGG | 0.485540 | 3_4:-70953198 | None:intergenic |
| AGAAAAGAATTTATTTGGAA+CGG | 0.493523 | 3_4:+70953532 | Msa0519020:three_prime_UTR |
| CAGCTCTGATTAATCAGGCT+TGG | 0.504417 | 3_4:+70953172 | Msa0519020:CDS |
| TATCATCTGATCTCAACATT+GGG | 0.505917 | 3_4:+70953355 | Msa0519020:CDS |
| GTCTGAATAGCACGTTCTAA+CGG | 0.508989 | 3_4:-70948029 | None:intergenic |
| ATATCATCTGATCTCAACAT+TGG | 0.509338 | 3_4:+70953354 | Msa0519020:CDS |
| GAGTGTTGCAGTGCTTTGGA+TGG | 0.517229 | 3_4:+70950656 | Msa0519020:intron |
| TACAAAACATGTGTCTTCCC+AGG | 0.519960 | 3_4:-70951820 | None:intergenic |
| CATGTTAAGGGAATTATCAA+TGG | 0.520231 | 3_4:+70951783 | Msa0519020:CDS |
| GTGATCATGCTGTTGTACTT+TGG | 0.526531 | 3_4:+70951853 | Msa0519020:CDS |
| TGTTATCTGCAGGTGCAGAC+AGG | 0.527295 | 3_4:+70951979 | Msa0519020:CDS |
| TTCCGAAGTAGCTGTTTCGT+CGG | 0.529083 | 3_4:+70948594 | Msa0519020:CDS |
| TTTGGGTTTGATGTTGGTGC+AGG | 0.530165 | 3_4:+70952008 | Msa0519020:CDS |
| GAAATCTTCGGTGTAACAGC+AGG | 0.530314 | 3_4:-70948547 | None:intergenic |
| TGTTGTACTTTGGCGCGAGC+AGG | 0.531627 | 3_4:+70951863 | Msa0519020:CDS |
| GACGGAGATTGTTAACTTCG+CGG | 0.531658 | 3_4:-70948195 | None:intergenic |
| AAGCAGATTGTGTTATCTGC+AGG | 0.531813 | 3_4:+70951969 | Msa0519020:CDS |
| ATATCAAATATGTGAATCAC+AGG | 0.533530 | 3_4:-70953234 | None:intergenic |
| ACATTTCAAGTCAGCACAAG+AGG | 0.535354 | 3_4:+70949846 | Msa0519020:CDS |
| AGAATATTTGGGTTTGATGT+TGG | 0.536408 | 3_4:+70952002 | Msa0519020:CDS |
| ACGGAGATTGTTAACTTCGC+GGG | 0.537563 | 3_4:-70948194 | None:intergenic |
| TCTTGTGCTGACTTGAAATG+TGG | 0.539146 | 3_4:-70949844 | None:intergenic |
| AGAACGTGTGAAATTCTTAG+AGG | 0.541392 | 3_4:+70951752 | Msa0519020:CDS |
| GGAAAGGCATGCTTAGATGT+TGG | 0.543340 | 3_4:+70953577 | Msa0519020:three_prime_UTR |
| TGGTATAGGCAAGACGGTGA+CGG | 0.548190 | 3_4:-70948213 | None:intergenic |
| AAGACGTGATGTATCACCTC+AGG | 0.550127 | 3_4:-70953640 | None:intergenic |
| GATGATATAGATATGAGAAG+AGG | 0.551317 | 3_4:-70953339 | None:intergenic |
| TTCTGGAAAGTCCAAGCCAA+AGG | 0.557141 | 3_4:+70950689 | Msa0519020:CDS |
| ATTGATAATTCCCTTAACAT+GGG | 0.559536 | 3_4:-70951781 | None:intergenic |
| TCAGCAAAATGTTGAAGGGA+AGG | 0.560402 | 3_4:+70948666 | Msa0519020:CDS |
| GATTATTTGATATTAGATTG+AGG | 0.569773 | 3_4:+70953097 | Msa0519020:CDS |
| ATAAACAAGTTGAAGTCGAC+CGG | 0.571664 | 3_4:-70952086 | None:intergenic |
| GAATGAAGATTCCTGTGCAA+TGG | 0.573307 | 3_4:-70951912 | None:intergenic |
| TCTGGAAAGTCCAAGCCAAA+GGG | 0.573565 | 3_4:+70950690 | Msa0519020:CDS |
| AACCGACGAAACAGCTACTT+CGG | 0.574905 | 3_4:-70948596 | None:intergenic |
| TAATATTCAGCACCAACAGA+AGG | 0.576076 | 3_4:-70953415 | None:intergenic |
| AATCAGGCTTGGTCTCCTGA+TGG | 0.579710 | 3_4:+70953183 | Msa0519020:CDS |
| ATACTTCTTCGGTTAGTGGA+GGG | 0.580151 | 3_4:+70948620 | Msa0519020:CDS |
| CATACTTCTTCGGTTAGTGG+AGG | 0.581642 | 3_4:+70948619 | Msa0519020:CDS |
| ATTCAGCACCAACAGAAGGA+TGG | 0.586139 | 3_4:-70953411 | None:intergenic |
| GATGGCCAGAAGATATAGCT+TGG | 0.587820 | 3_4:+70951531 | Msa0519020:CDS |
| AAAGAGTCTTTGGAGCCTTG+TGG | 0.589884 | 3_4:+70953304 | Msa0519020:CDS |
| TTGATAATTCCCTTAACATG+GGG | 0.590416 | 3_4:-70951780 | None:intergenic |
| AAATTGGAATAAAATTAAAG+GGG | 0.598095 | 3_4:+70951622 | Msa0519020:CDS |
| GGAAGCCAAGACCATTGCAC+AGG | 0.600850 | 3_4:+70951901 | Msa0519020:CDS |
| TAGATCAGCAAAATGTTGAA+GGG | 0.602211 | 3_4:+70948662 | Msa0519020:CDS |
| TAATTTGTCGTTGTAGCCTG+AGG | 0.603955 | 3_4:+70953624 | Msa0519020:three_prime_UTR |
| TTATATAACATCTGGTTCAG+CGG | 0.612784 | 3_4:+70953209 | Msa0519020:CDS |
| GATATAGCTTGGCACCCGGA+AGG | 0.613083 | 3_4:+70951542 | Msa0519020:CDS |
| ATATATGCAGCTTGATGATG+CGG | 0.615595 | 3_4:+70948333 | Msa0519020:intron |
| TTGGCGCGAGCAGGATGATG+AGG | 0.619686 | 3_4:+70951872 | Msa0519020:CDS |
| AGAAGATATAGCTTGGCACC+CGG | 0.619978 | 3_4:+70951538 | Msa0519020:CDS |
| CAGAACACTTTACTTCATCA+GGG | 0.627232 | 3_4:-70953385 | None:intergenic |
| ACAAAACATGTGTCTTCCCA+GGG | 0.629446 | 3_4:-70951819 | None:intergenic |
| ACTTGTTTATGGTTCAAACA+GGG | 0.647131 | 3_4:+70952099 | Msa0519020:CDS |
| AGGAATAGACTGAAGCCACA+AGG | 0.650340 | 3_4:-70953319 | None:intergenic |
| GTCAGCACAAGAGGAAATTG+CGG | 0.652458 | 3_4:+70949855 | Msa0519020:CDS |
| ATCAGTAGAGTTAAGCAGAG+AGG | 0.678641 | 3_4:-70951486 | None:intergenic |
| TATTTGATATTAGATTGAGG+CGG | 0.699704 | 3_4:+70953100 | Msa0519020:CDS |
| GCTATTCAGACAAGAAAGCG+AGG | 0.703852 | 3_4:+70948041 | Msa0519020:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATGAAATAATAGAGAAAA+TGG | + | chr3_4:70948102-70948121 | Msa0519020:exon | 15.0% |
| !! | ATTTAAATATTCAGAAACAA+GGG | - | chr3_4:70948274-70948293 | None:intergenic | 15.0% |
| !! | AATTTAAATATTCAGAAACA+AGG | - | chr3_4:70948275-70948294 | None:intergenic | 15.0% |
| !! | TTAATTAATTTCACAAACTT+AGG | - | chr3_4:70948314-70948333 | None:intergenic | 15.0% |
| !!! | ATTGGTAATAATGTAAATAA+TGG | + | chr3_4:70948894-70948913 | Msa0519020:intron | 15.0% |
| !! | ATTTATAGATTATAGGTATT+AGG | + | chr3_4:70949055-70949074 | Msa0519020:intron | 15.0% |
| !!! | TTTTTATTTGTCTATAGATT+AGG | + | chr3_4:70949098-70949117 | Msa0519020:intron | 15.0% |
| !! | CTGGTAATAATTTATAAAAA+TGG | + | chr3_4:70949247-70949266 | Msa0519020:intron | 15.0% |
| !!! | TTCAAATGTAAATTCTAAAA+TGG | + | chr3_4:70950186-70950205 | Msa0519020:intron | 15.0% |
| !! | TAGTCAAAATACAATTAAAT+GGG | - | chr3_4:70951302-70951321 | None:intergenic | 15.0% |
| !! | ATAGTCAAAATACAATTAAA+TGG | - | chr3_4:70951303-70951322 | None:intergenic | 15.0% |
| !! | AAATATGAATTAGATTATGT+GGG | - | chr3_4:70951432-70951451 | None:intergenic | 15.0% |
| !! | AAAATATGAATTAGATTATG+TGG | - | chr3_4:70951433-70951452 | None:intergenic | 15.0% |
| !! | ACAAATTGGAATAAAATTAA+AGG | + | chr3_4:70951620-70951639 | Msa0519020:CDS | 15.0% |
| !! | CAAATTGGAATAAAATTAAA+GGG | + | chr3_4:70951621-70951640 | Msa0519020:CDS | 15.0% |
| !! | AAATTGGAATAAAATTAAAG+GGG | + | chr3_4:70951622-70951641 | Msa0519020:CDS | 15.0% |
| !!! | AAAGTTTAAATTTTATGTCA+GGG | - | chr3_4:70951666-70951685 | None:intergenic | 15.0% |
| !! | AAAATTTAAACTTTGGATTT+AGG | + | chr3_4:70951672-70951691 | Msa0519020:intron | 15.0% |
| !! | AATCAATATTATTATCAAGT+AGG | - | chr3_4:70952869-70952888 | None:intergenic | 15.0% |
| !! | ATATAAGATATAATCTTAAC+AGG | + | chr3_4:70953253-70953272 | Msa0519020:CDS | 15.0% |
| !! | AGTAAAGAAAAGAATTTATT+TGG | + | chr3_4:70953527-70953546 | Msa0519020:three_prime_UTR | 15.0% |
| !!! | TAAATTAGGAAAATTTTGAT+TGG | + | chr3_4:70953555-70953574 | Msa0519020:three_prime_UTR | 15.0% |
| !!! | AAATTAGGAAAATTTTGATT+GGG | + | chr3_4:70953556-70953575 | Msa0519020:three_prime_UTR | 15.0% |
| !!! | GATATTCATTTATTGACTAT+AGG | + | chr3_4:70948717-70948736 | Msa0519020:intron | 20.0% |
| !!! | ATTTATTGACTATAGGTATT+AGG | + | chr3_4:70948724-70948743 | Msa0519020:intron | 20.0% |
| !!! | TTTTTGTTTGTCTCTTTATT+AGG | + | chr3_4:70948766-70948785 | Msa0519020:intron | 20.0% |
| !! | TTGATTAAATGTAATGCATA+TGG | + | chr3_4:70948981-70949000 | Msa0519020:intron | 20.0% |
| !! | TGATTAAATGTAATGCATAT+GGG | + | chr3_4:70948982-70949001 | Msa0519020:intron | 20.0% |
| !! | GACATTCATTTATAGATTAT+AGG | + | chr3_4:70949048-70949067 | Msa0519020:intron | 20.0% |
| !!! | GTTTTGTTTGGATTAATTTT+TGG | + | chr3_4:70949120-70949139 | Msa0519020:intron | 20.0% |
| !!! | GTTTTTGAAAAATTGAAATG+TGG | + | chr3_4:70949481-70949500 | Msa0519020:intron | 20.0% |
| !! | TGTATATTTACTTGGTATAT+TGG | + | chr3_4:70949600-70949619 | Msa0519020:intron | 20.0% |
| !! | AATATGATGAATCAATATCT+AGG | + | chr3_4:70950103-70950122 | Msa0519020:intron | 20.0% |
| !!! | ATATCTAGGCTTATAATTTT+AGG | + | chr3_4:70950117-70950136 | Msa0519020:intron | 20.0% |
| !!! | TATCTAGGCTTATAATTTTA+GGG | + | chr3_4:70950118-70950137 | Msa0519020:intron | 20.0% |
| !! | AATATAAGCTTAAACCAAAA+CGG | - | chr3_4:70950221-70950240 | None:intergenic | 20.0% |
| !!! | TTATTTTATTTCATAAACGC+TGG | + | chr3_4:70950484-70950503 | Msa0519020:intron | 20.0% |
| !!! | TCTTTTGTAATATATGTTTC+TGG | + | chr3_4:70950584-70950603 | Msa0519020:intron | 20.0% |
| !! | TAGATATAAAATTGTGAACA+GGG | + | chr3_4:70950796-70950815 | Msa0519020:intron | 20.0% |
| !!! | TCTCTATCAATTTTTATTAG+AGG | + | chr3_4:70950907-70950926 | Msa0519020:intron | 20.0% |
| !! | GCAAGTATATTATATGATAT+GGG | - | chr3_4:70950973-70950992 | None:intergenic | 20.0% |
| !! | TGCAAGTATATTATATGATA+TGG | - | chr3_4:70950974-70950993 | None:intergenic | 20.0% |
| !!! | CAAAGTTTAAATTTTATGTC+AGG | - | chr3_4:70951667-70951686 | None:intergenic | 20.0% |
| !! | CTGACATAAAATTTAAACTT+TGG | + | chr3_4:70951665-70951684 | Msa0519020:intron | 20.0% |
| !! | AAAATTTATATGCAATTGAC+AGG | + | chr3_4:70951728-70951747 | Msa0519020:intron | 20.0% |
| !! | AGTAGAAAATAAAAGCAAAA+AGG | - | chr3_4:70952160-70952179 | None:intergenic | 20.0% |
| !!! | TTTTTGCTTTTATTTTCTAC+TGG | + | chr3_4:70952159-70952178 | Msa0519020:intron | 20.0% |
| !!! | ATTGGAAACAAAAAGAATTT+TGG | + | chr3_4:70952410-70952429 | Msa0519020:intron | 20.0% |
| !!! | TGTCTTTTAATTGGAAAAAA+TGG | + | chr3_4:70952498-70952517 | Msa0519020:intron | 20.0% |
| !!! | CAATAAAAATTTTCACCATA+AGG | - | chr3_4:70952567-70952586 | None:intergenic | 20.0% |
| !!! | TTAACTATTTTCTTTCTATC+AGG | + | chr3_4:70953055-70953074 | Msa0519020:intron | 20.0% |
| !! | GATTATTTGATATTAGATTG+AGG | + | chr3_4:70953097-70953116 | Msa0519020:CDS | 20.0% |
| !!! | GAAGAAATATTGATTTTAGT+TGG | + | chr3_4:70953467-70953486 | Msa0519020:three_prime_UTR | 20.0% |
| !! | AGAAAAGAATTTATTTGGAA+CGG | + | chr3_4:70953532-70953551 | Msa0519020:three_prime_UTR | 20.0% |
| !! | GAAAATCATTAATTGCAATT+TGG | + | chr3_4:70953665-70953684 | Msa0519020:three_prime_UTR | 20.0% |
| ! | AAAGGGACAAAAAGAAAATT+TGG | + | chr3_4:70948691-70948710 | Msa0519020:CDS | 25.0% |
| !!! | TCTCTTTATTAGGTTTTGTT+TGG | + | chr3_4:70948776-70948795 | Msa0519020:intron | 25.0% |
| ! | CTTATAAGAACAATCTTACT+AGG | - | chr3_4:70948842-70948861 | None:intergenic | 25.0% |
| !!! | TCTATAGATTAGGTTTTGTT+TGG | + | chr3_4:70949108-70949127 | Msa0519020:intron | 25.0% |
| ! | ACAATAGAGTCATTTAAACT+GGG | - | chr3_4:70949159-70949178 | None:intergenic | 25.0% |
| ! | AACAATAGAGTCATTTAAAC+TGG | - | chr3_4:70949160-70949179 | None:intergenic | 25.0% |
| !!! | CTCAGTAAGAATGTTTTTAT+AGG | + | chr3_4:70949184-70949203 | Msa0519020:intron | 25.0% |
| ! | TGTTGATGTTGTATTAATGT+CGG | + | chr3_4:70949362-70949381 | Msa0519020:intron | 25.0% |
| ! | AAGAAAATAATCCAATTACC+TGG | - | chr3_4:70949921-70949940 | None:intergenic | 25.0% |
| ! | AAGGTCAAATGTTATTAACA+GGG | + | chr3_4:70950053-70950072 | Msa0519020:intron | 25.0% |
| ! | GATTGGTAAACTTTATAAGT+TGG | - | chr3_4:70950150-70950169 | None:intergenic | 25.0% |
| ! | TATAAAAGAAAGTTGTAGCT+AGG | + | chr3_4:70950372-70950391 | Msa0519020:intron | 25.0% |
| ! | CTAGATATAAAATTGTGAAC+AGG | + | chr3_4:70950795-70950814 | Msa0519020:intron | 25.0% |
| ! | GTATATTATATGATATGGGA+GGG | - | chr3_4:70950969-70950988 | None:intergenic | 25.0% |
| ! | AGTATATTATATGATATGGG+AGG | - | chr3_4:70950970-70950989 | None:intergenic | 25.0% |
| !! | AGTTACTTTGTTACAACTAA+AGG | - | chr3_4:70951004-70951023 | None:intergenic | 25.0% |
| ! | AGATTGTTAGTTACTACTAT+AGG | + | chr3_4:70951079-70951098 | Msa0519020:intron | 25.0% |
| ! | TACATGCTTAATATATGAAG+TGG | + | chr3_4:70951111-70951130 | Msa0519020:intron | 25.0% |
| ! | ACATGCTTAATATATGAAGT+GGG | + | chr3_4:70951112-70951131 | Msa0519020:intron | 25.0% |
| ! | CTGATGATCTACAAAATAAT+AGG | - | chr3_4:70951466-70951485 | None:intergenic | 25.0% |
| ! | CACAAATATCAGTTACAAAT+TGG | + | chr3_4:70951606-70951625 | Msa0519020:CDS | 25.0% |
| !!! | TGGATTTAGGTTTCTTTTAT+TGG | + | chr3_4:70951685-70951704 | Msa0519020:intron | 25.0% |
| !! | ATTGATAATTCCCTTAACAT+GGG | - | chr3_4:70951784-70951803 | None:intergenic | 25.0% |
| ! | AGCAAAAAGGTTTAACAAAT+GGG | - | chr3_4:70952147-70952166 | None:intergenic | 25.0% |
| ! | AAGCAAAAAGGTTTAACAAA+TGG | - | chr3_4:70952148-70952167 | None:intergenic | 25.0% |
| !!! | TGTCTCGTTTTTTTTGTTTT+AGG | + | chr3_4:70952235-70952254 | Msa0519020:intron | 25.0% |
| !!! | GTCTCGTTTTTTTTGTTTTA+GGG | + | chr3_4:70952236-70952255 | Msa0519020:intron | 25.0% |
| !! | TTTTTCCAATTAAAAGACAC+AGG | - | chr3_4:70952497-70952516 | None:intergenic | 25.0% |
| ! | AAAAAATGGAATCTCTATGA+AGG | + | chr3_4:70952512-70952531 | Msa0519020:intron | 25.0% |
| ! | AAAAATGGAATCTCTATGAA+GGG | + | chr3_4:70952513-70952532 | Msa0519020:intron | 25.0% |
| !! | TCCTTTTCCTTTTATATACA+TGG | + | chr3_4:70952603-70952622 | Msa0519020:intron | 25.0% |
| ! | TCCATGTATATAAAAGGAAA+AGG | - | chr3_4:70952607-70952626 | None:intergenic | 25.0% |
| !!! | ATGTAGTTGTCTTTTTTATG+CGG | + | chr3_4:70952646-70952665 | Msa0519020:intron | 25.0% |
| ! | CAAGAACATGAATAACAAAA+GGG | - | chr3_4:70952820-70952839 | None:intergenic | 25.0% |
| ! | TTCTATTCTACATTGAATTC+AGG | + | chr3_4:70952895-70952914 | Msa0519020:intron | 25.0% |
| ! | AAAGTATGTTCCTATCTTAA+AGG | - | chr3_4:70952931-70952950 | None:intergenic | 25.0% |
| ! | AACTAAATAATACCCAAGAA+TGG | - | chr3_4:70953034-70953053 | None:intergenic | 25.0% |
| ! | TATTTGATATTAGATTGAGG+CGG | + | chr3_4:70953100-70953119 | Msa0519020:CDS | 25.0% |
| ! | ATATCAAATATGTGAATCAC+AGG | - | chr3_4:70953237-70953256 | None:intergenic | 25.0% |
| !! | ATGTTGCATCAAATTTTTGT+AGG | + | chr3_4:70953445-70953464 | Msa0519020:three_prime_UTR | 25.0% |
| !!! | TTGGAACTTTGAAATTTTGT+GGG | + | chr3_4:70953486-70953505 | Msa0519020:three_prime_UTR | 25.0% |
| !! | TTTATTTGGAACGGTAAATT+AGG | + | chr3_4:70953541-70953560 | Msa0519020:three_prime_UTR | 25.0% |
| AGAATTGAAAAAGACATTGG+CGG | + | chr3_4:70947997-70948016 | Msa0519020:five_prime_UTR | 30.0% | |
| !!! | AATGACCTGATTTTTGGTAT+AGG | - | chr3_4:70948230-70948249 | None:intergenic | 30.0% |
| ! | GAAGAAAATGACCTGATTTT+TGG | - | chr3_4:70948236-70948255 | None:intergenic | 30.0% |
| AATATTCAGAAACAAGGGTT+TGG | - | chr3_4:70948269-70948288 | None:intergenic | 30.0% | |
| AAAAGATTCAGAATCCAAAC+TGG | + | chr3_4:70948366-70948385 | Msa0519020:CDS | 30.0% | |
| ! | AACTCAGATGATGATGATAA+TGG | + | chr3_4:70948424-70948443 | Msa0519020:CDS | 30.0% |
| ATAGATCAGCAAAATGTTGA+AGG | + | chr3_4:70948661-70948680 | Msa0519020:CDS | 30.0% | |
| TAGATCAGCAAAATGTTGAA+GGG | + | chr3_4:70948662-70948681 | Msa0519020:CDS | 30.0% | |
| ATAACTAACCCTACTTAACT+AGG | + | chr3_4:70949289-70949308 | Msa0519020:intron | 30.0% | |
| ACGAATTACCTAGTTAAGTA+GGG | - | chr3_4:70949300-70949319 | None:intergenic | 30.0% | |
| AACGAATTACCTAGTTAAGT+AGG | - | chr3_4:70949301-70949320 | None:intergenic | 30.0% | |
| TGGCTCTTTGTATATTTACT+TGG | + | chr3_4:70949592-70949611 | Msa0519020:intron | 30.0% | |
| !!! | TTCTCTTTGGTTTTCATATC+CGG | + | chr3_4:70949658-70949677 | Msa0519020:intron | 30.0% |
| GTATTAAAGGAATCAATTCC+TGG | - | chr3_4:70949781-70949800 | None:intergenic | 30.0% | |
| TTAATCAACAAATCGCAGAA+AGG | - | chr3_4:70949955-70949974 | None:intergenic | 30.0% | |
| !! | TCTGCGATTTGTTGATTAAT+AGG | + | chr3_4:70949956-70949975 | Msa0519020:intron | 30.0% |
| CAAGGTCAAATGTTATTAAC+AGG | + | chr3_4:70950052-70950071 | Msa0519020:intron | 30.0% | |
| !!! | AGGCTTATAATTTTAGGGTA+TGG | + | chr3_4:70950123-70950142 | Msa0519020:intron | 30.0% |
| !!! | GGCTTATAATTTTAGGGTAT+GGG | + | chr3_4:70950124-70950143 | Msa0519020:intron | 30.0% |
| ! | AATGGAAGTTTTTACCGTTT+TGG | + | chr3_4:70950204-70950223 | Msa0519020:intron | 30.0% |
| AAGAGATATTCATACAACAG+AGG | - | chr3_4:70950283-70950302 | None:intergenic | 30.0% | |
| GTTATTGTTCAAACCACTAA+AGG | - | chr3_4:70950548-70950567 | None:intergenic | 30.0% | |
| !!! | TCTGATCATTGCTACTTTTT+GGG | + | chr3_4:70950634-70950653 | Msa0519020:intron | 30.0% |
| ! | TTTTATTAGAGGAATAGCCT+AGG | + | chr3_4:70950918-70950937 | Msa0519020:intron | 30.0% |
| !! | ATTGTTCTAGAGAGTTCTAA+GGG | - | chr3_4:70951049-70951068 | None:intergenic | 30.0% |
| !! | AATTGTTCTAGAGAGTTCTA+AGG | - | chr3_4:70951050-70951069 | None:intergenic | 30.0% |
| CAAAGAGTAGAAGTTGTTAA+AGG | - | chr3_4:70951178-70951197 | None:intergenic | 30.0% | |
| AAGAAATGTATGAGATGACA+CGG | - | chr3_4:70951275-70951294 | None:intergenic | 30.0% | |
| ATGAATTAGATTATGTGGGT+GGG | - | chr3_4:70951428-70951447 | None:intergenic | 30.0% | |
| TATGAATTAGATTATGTGGG+TGG | - | chr3_4:70951429-70951448 | None:intergenic | 30.0% | |
| TGATCTACAAAATAATAGGC+AGG | - | chr3_4:70951462-70951481 | None:intergenic | 30.0% | |
| GGAATAAAATTAAAGGGGTA+TGG | + | chr3_4:70951627-70951646 | Msa0519020:intron | 30.0% | |
| ! | TTGATAATTCCCTTAACATG+GGG | - | chr3_4:70951783-70951802 | None:intergenic | 30.0% |
| ! | CATTGATAATTCCCTTAACA+TGG | - | chr3_4:70951785-70951804 | None:intergenic | 30.0% |
| CATGTTAAGGGAATTATCAA+TGG | + | chr3_4:70951783-70951802 | Msa0519020:CDS | 30.0% | |
| ! | AGAATATTTGGGTTTGATGT+TGG | + | chr3_4:70952002-70952021 | Msa0519020:CDS | 30.0% |
| ! | AACTTGTTTATGGTTCAAAC+AGG | + | chr3_4:70952098-70952117 | Msa0519020:CDS | 30.0% |
| ACTTGTTTATGGTTCAAACA+GGG | + | chr3_4:70952099-70952118 | Msa0519020:CDS | 30.0% | |
| ATAATAGTGCAAGAAACTTC+AGG | - | chr3_4:70952323-70952342 | None:intergenic | 30.0% | |
| ! | GAGTTTAAAGTCAAAGTAAG+CGG | - | chr3_4:70952437-70952456 | None:intergenic | 30.0% |
| ! | TTTTGTATGCAACATCCTTA+TGG | + | chr3_4:70952549-70952568 | Msa0519020:intron | 30.0% |
| GCACATTCCATGTATATAAA+AGG | - | chr3_4:70952613-70952632 | None:intergenic | 30.0% | |
| !!! | TTTTTTATGCGGATGACATT+TGG | + | chr3_4:70952657-70952676 | Msa0519020:intron | 30.0% |
| ! | TTTTTATGCGGATGACATTT+GGG | + | chr3_4:70952658-70952677 | Msa0519020:intron | 30.0% |
| TTTCTTCTGCCTTATAAACA+TGG | + | chr3_4:70952683-70952702 | Msa0519020:intron | 30.0% | |
| TTCTTCTGCCTTATAAACAT+GGG | + | chr3_4:70952684-70952703 | Msa0519020:intron | 30.0% | |
| !! | TTGTTTTGCCCATGTTTATA+AGG | - | chr3_4:70952695-70952714 | None:intergenic | 30.0% |
| ACTCTTGTCCTTATATTGAA+GGG | - | chr3_4:70952764-70952783 | None:intergenic | 30.0% | |
| TACTCTTGTCCTTATATTGA+AGG | - | chr3_4:70952765-70952784 | None:intergenic | 30.0% | |
| ! | AAGAGTATGTTCAATTGTTG+TGG | + | chr3_4:70952778-70952797 | Msa0519020:intron | 30.0% |
| CCAAGAACATGAATAACAAA+AGG | - | chr3_4:70952821-70952840 | None:intergenic | 30.0% | |
| !!! | CCTTTTGTTATTCATGTTCT+TGG | + | chr3_4:70952818-70952837 | Msa0519020:intron | 30.0% |
| ! | TTGTTATTCATGTTCTTGGT+TGG | + | chr3_4:70952822-70952841 | Msa0519020:intron | 30.0% |
| !! | ATATAGTGTGCCTTTAAGAT+AGG | + | chr3_4:70952918-70952937 | Msa0519020:intron | 30.0% |
| TTTGTCAAGAAAAGAGAGAT+AGG | + | chr3_4:70952949-70952968 | Msa0519020:intron | 30.0% | |
| TGGCAATAGAAGAAAAATCT+TGG | - | chr3_4:70953014-70953033 | None:intergenic | 30.0% | |
| ! | TTTTCTTCTATTGCCATTCT+TGG | + | chr3_4:70953018-70953037 | Msa0519020:intron | 30.0% |
| TTTCTTCTATTGCCATTCTT+GGG | + | chr3_4:70953019-70953038 | Msa0519020:intron | 30.0% | |
| GATGTTATATAAAGACCATC+AGG | - | chr3_4:70953201-70953220 | None:intergenic | 30.0% | |
| GATGGTCTTTATATAACATC+TGG | + | chr3_4:70953201-70953220 | Msa0519020:CDS | 30.0% | |
| ! | TTATATAACATCTGGTTCAG+CGG | + | chr3_4:70953209-70953228 | Msa0519020:CDS | 30.0% |
| GATGATATAGATATGAGAAG+AGG | - | chr3_4:70953342-70953361 | None:intergenic | 30.0% | |
| ATATCATCTGATCTCAACAT+TGG | + | chr3_4:70953354-70953373 | Msa0519020:CDS | 30.0% | |
| TATCATCTGATCTCAACATT+GGG | + | chr3_4:70953355-70953374 | Msa0519020:CDS | 30.0% | |
| !!! | GTTGGAACTTTGAAATTTTG+TGG | + | chr3_4:70953485-70953504 | Msa0519020:three_prime_UTR | 30.0% |
| !!! | AGGAAAATTTTGATTGGGAA+AGG | + | chr3_4:70953561-70953580 | Msa0519020:three_prime_UTR | 30.0% |
| !!! | GATTTTTGGTATAGGCAAGA+CGG | - | chr3_4:70948222-70948241 | None:intergenic | 35.0% |
| TCTTGCCTATACCAAAAATC+AGG | + | chr3_4:70948222-70948241 | Msa0519020:CDS | 35.0% | |
| !! | ATATATGCAGCTTGATGATG+CGG | + | chr3_4:70948333-70948352 | Msa0519020:intron | 35.0% |
| GATCGAATAGTCCAATTGAT+AGG | + | chr3_4:70948473-70948492 | Msa0519020:CDS | 35.0% | |
| GAACGTTCATTCCTATCAAT+TGG | - | chr3_4:70948487-70948506 | None:intergenic | 35.0% | |
| AATGTTGAAGGGAAGGATAA+AGG | + | chr3_4:70948673-70948692 | Msa0519020:CDS | 35.0% | |
| ATGTTGAAGGGAAGGATAAA+GGG | + | chr3_4:70948674-70948693 | Msa0519020:CDS | 35.0% | |
| CTTATCTCACAGAGTATAGT+CGG | - | chr3_4:70948943-70948962 | None:intergenic | 35.0% | |
| ATACTCTGTGAGATAAGACT+TGG | + | chr3_4:70948946-70948965 | Msa0519020:intron | 35.0% | |
| AAAGCTTATCTGAACTGAAC+TGG | + | chr3_4:70949572-70949591 | Msa0519020:intron | 35.0% | |
| AACCTTGGATACTTAGATAC+AGG | - | chr3_4:70949632-70949651 | None:intergenic | 35.0% | |
| !! | TTGGTTTTCATATCCGGTAT+TGG | + | chr3_4:70949664-70949683 | Msa0519020:intron | 35.0% |
| CAACAGTAAAAAGCCAATAC+CGG | - | chr3_4:70949680-70949699 | None:intergenic | 35.0% | |
| TTACTGTTGTCTTTGTCTCA+AGG | + | chr3_4:70949691-70949710 | Msa0519020:intron | 35.0% | |
| !! | CTTTGTCTCAAGGTTGATTT+TGG | + | chr3_4:70949701-70949720 | Msa0519020:intron | 35.0% |
| GATGAACTCTTGCGTATTAA+AGG | - | chr3_4:70949794-70949813 | None:intergenic | 35.0% | |
| TTGAAATGTGGTTGCTTGAT+TGG | - | chr3_4:70949835-70949854 | None:intergenic | 35.0% | |
| ACCAATCAAGATAGAATGAG+AGG | + | chr3_4:70950163-70950182 | Msa0519020:intron | 35.0% | |
| ACCTCTCATTCTATCTTGAT+TGG | - | chr3_4:70950167-70950186 | None:intergenic | 35.0% | |
| ! | TTTTATGAGACGACCTTTAG+TGG | + | chr3_4:70950532-70950551 | Msa0519020:intron | 35.0% |
| !!! | GTCTGATCATTGCTACTTTT+TGG | + | chr3_4:70950633-70950652 | Msa0519020:intron | 35.0% |
| TATGCCCTGATTTATCTTTC+TGG | + | chr3_4:70950713-70950732 | Msa0519020:intron | 35.0% | |
| !! | TTGTTCTAGAGAGTTCTAAG+GGG | - | chr3_4:70951048-70951067 | None:intergenic | 35.0% |
| TGCTTAATATATGAAGTGGG+AGG | + | chr3_4:70951115-70951134 | Msa0519020:intron | 35.0% | |
| GCTTAATATATGAAGTGGGA+GGG | + | chr3_4:70951116-70951135 | Msa0519020:intron | 35.0% | |
| TCAGTATATACTGCTGATAG+TGG | + | chr3_4:70951578-70951597 | Msa0519020:CDS | 35.0% | |
| AGAACGTGTGAAATTCTTAG+AGG | + | chr3_4:70951752-70951771 | Msa0519020:CDS | 35.0% | |
| !!! | ATGGTATTGTTTTTATGCCC+TGG | + | chr3_4:70951802-70951821 | Msa0519020:CDS | 35.0% |
| !!! | TGGTATTGTTTTTATGCCCT+GGG | + | chr3_4:70951803-70951822 | Msa0519020:CDS | 35.0% |
| ! | GAAGACACATGTTTTGTAAC+TGG | + | chr3_4:70951825-70951844 | Msa0519020:CDS | 35.0% |
| ! | ATAAACAAGTTGAAGTCGAC+CGG | - | chr3_4:70952089-70952108 | None:intergenic | 35.0% |
| !!! | ATTTTCTACTGGCTTTGTCA+TGG | + | chr3_4:70952170-70952189 | Msa0519020:intron | 35.0% |
| ACAGGTGTGAGATAATAGAA+TGG | - | chr3_4:70952479-70952498 | None:intergenic | 35.0% | |
| ! | TCACACCTGTGTCTTTTAAT+TGG | + | chr3_4:70952489-70952508 | Msa0519020:intron | 35.0% |
| TGGAATGTGCTTGAAATAGT+AGG | + | chr3_4:70952623-70952642 | Msa0519020:intron | 35.0% | |
| TCTTGTCCTTATATTGAAGG+GGG | - | chr3_4:70952762-70952781 | None:intergenic | 35.0% | |
| CTCTTGTCCTTATATTGAAG+GGG | - | chr3_4:70952763-70952782 | None:intergenic | 35.0% | |
| !! | AGAAAAATCTTGGTGTCAAG+TGG | - | chr3_4:70953004-70953023 | None:intergenic | 35.0% |
| ! | TCAATCAGCTCTGATTAATC+AGG | + | chr3_4:70953167-70953186 | Msa0519020:CDS | 35.0% |
| !! | TGAGCTTTTATCGATTGTGA+CGG | - | chr3_4:70953279-70953298 | None:intergenic | 35.0% |
| CAGAACACTTTACTTCATCA+GGG | - | chr3_4:70953388-70953407 | None:intergenic | 35.0% | |
| ACAGAACACTTTACTTCATC+AGG | - | chr3_4:70953389-70953408 | None:intergenic | 35.0% | |
| TAATATTCAGCACCAACAGA+AGG | - | chr3_4:70953418-70953437 | None:intergenic | 35.0% | |
| TCTGAATAGCACGTTCTAAC+GGG | - | chr3_4:70948031-70948050 | None:intergenic | 40.0% | |
| GTCTGAATAGCACGTTCTAA+CGG | - | chr3_4:70948032-70948051 | None:intergenic | 40.0% | |
| !! | ACAAGAAAGCGAGGTTTTAG+AGG | + | chr3_4:70948050-70948069 | Msa0519020:five_prime_UTR | 40.0% |
| TCAGAAACAAGGGTTTGGAT+TGG | - | chr3_4:70948264-70948283 | None:intergenic | 40.0% | |
| CTGTTACACCGAAGATTTCA+CGG | + | chr3_4:70948551-70948570 | Msa0519020:CDS | 40.0% | |
| !! | TTCGTCGGTTCATACTTCTT+CGG | + | chr3_4:70948609-70948628 | Msa0519020:CDS | 40.0% |
| GTTCATACTTCTTCGGTTAG+TGG | + | chr3_4:70948616-70948635 | Msa0519020:CDS | 40.0% | |
| ATACTTCTTCGGTTAGTGGA+GGG | + | chr3_4:70948620-70948639 | Msa0519020:CDS | 40.0% | |
| TCAGCAAAATGTTGAAGGGA+AGG | + | chr3_4:70948666-70948685 | Msa0519020:CDS | 40.0% | |
| TCAGACGTCATACAAAACAC+TGG | + | chr3_4:70949228-70949247 | Msa0519020:intron | 40.0% | |
| AGCCTGTATCTAAGTATCCA+AGG | + | chr3_4:70949627-70949646 | Msa0519020:intron | 40.0% | |
| ! | CAAAGAGAAGCACATAACCT+TGG | - | chr3_4:70949647-70949666 | None:intergenic | 40.0% |
| CAAGGTTATGTGCTTCTCTT+TGG | + | chr3_4:70949645-70949664 | Msa0519020:intron | 40.0% | |
| TCCAGAACAAAAAGAACACC+AGG | + | chr3_4:70949760-70949779 | Msa0519020:intron | 40.0% | |
| ! | TCCTGGTGTTCTTTTTGTTC+TGG | - | chr3_4:70949764-70949783 | None:intergenic | 40.0% |
| !! | TCTTGTGCTGACTTGAAATG+TGG | - | chr3_4:70949847-70949866 | None:intergenic | 40.0% |
| ! | ACATTTCAAGTCAGCACAAG+AGG | + | chr3_4:70949846-70949865 | Msa0519020:CDS | 40.0% |
| GCAAAAAGATGATCATTGGC+GGG | - | chr3_4:70949896-70949915 | None:intergenic | 40.0% | |
| CGCAAAAAGATGATCATTGG+CGG | - | chr3_4:70949897-70949916 | None:intergenic | 40.0% | |
| GGTCGCAAAAAGATGATCAT+TGG | - | chr3_4:70949900-70949919 | None:intergenic | 40.0% | |
| ! | ATGATCATCTTTTTGCGACC+AGG | + | chr3_4:70949900-70949919 | Msa0519020:CDS | 40.0% |
| ! | TCTTTTTGCGACCAGGTAAT+TGG | + | chr3_4:70949907-70949926 | Msa0519020:intron | 40.0% |
| ! | TCTTTTCATCTCCCAGCTTT+TGG | + | chr3_4:70950017-70950036 | Msa0519020:intron | 40.0% |
| ATTTCATAAACGCTGGCGAT+TGG | + | chr3_4:70950491-70950510 | Msa0519020:intron | 40.0% | |
| ATAAATCAGGGCATACCCTT+TGG | - | chr3_4:70950708-70950727 | None:intergenic | 40.0% | |
| GGCACCAGAAAGATAAATCA+GGG | - | chr3_4:70950720-70950739 | None:intergenic | 40.0% | |
| TGGCACCAGAAAGATAAATC+AGG | - | chr3_4:70950721-70950740 | None:intergenic | 40.0% | |
| !! | TTATCTTTCTGGTGCCACTT+TGG | + | chr3_4:70950724-70950743 | Msa0519020:intron | 40.0% |
| !! | AGAATAGAAGCACTCCAAAG+TGG | - | chr3_4:70950741-70950760 | None:intergenic | 40.0% |
| ! | GCACAAGCATAATTTGTCTG+TGG | + | chr3_4:70950846-70950865 | Msa0519020:intron | 40.0% |
| TAAGGGGATAACTAACTGAC+AGG | - | chr3_4:70951032-70951051 | None:intergenic | 40.0% | |
| ACTTCTACTCTTTGAATGCG+AGG | + | chr3_4:70951184-70951203 | Msa0519020:intron | 40.0% | |
| ! | ACTCTTTGAATGCGAGGTTT+TGG | + | chr3_4:70951190-70951209 | Msa0519020:intron | 40.0% |
| CTTCTTTCCTCTATCACTGA+TGG | + | chr3_4:70951329-70951348 | Msa0519020:intron | 40.0% | |
| GAAGAAACCATCAGTGATAG+AGG | - | chr3_4:70951339-70951358 | None:intergenic | 40.0% | |
| CCTAAACATCATGTCTACTG+AGG | - | chr3_4:70951361-70951380 | None:intergenic | 40.0% | |
| CCTCAGTAGACATGATGTTT+AGG | + | chr3_4:70951358-70951377 | Msa0519020:intron | 40.0% | |
| ATCAGTAGAGTTAAGCAGAG+AGG | - | chr3_4:70951489-70951508 | None:intergenic | 40.0% | |
| ACAAAACATGTGTCTTCCCA+GGG | - | chr3_4:70951822-70951841 | None:intergenic | 40.0% | |
| TACAAAACATGTGTCTTCCC+AGG | - | chr3_4:70951823-70951842 | None:intergenic | 40.0% | |
| ! | GACACATGTTTTGTAACTGG+TGG | + | chr3_4:70951828-70951847 | Msa0519020:CDS | 40.0% |
| GTGATCATGCTGTTGTACTT+TGG | + | chr3_4:70951853-70951872 | Msa0519020:CDS | 40.0% | |
| GAATGAAGATTCCTGTGCAA+TGG | - | chr3_4:70951915-70951934 | None:intergenic | 40.0% | |
| TCTTCATTCTTCTGCTGTCA+TGG | + | chr3_4:70951926-70951945 | Msa0519020:CDS | 40.0% | |
| CTTCATTCTTCTGCTGTCAT+GGG | + | chr3_4:70951927-70951946 | Msa0519020:CDS | 40.0% | |
| AAGCAGATTGTGTTATCTGC+AGG | + | chr3_4:70951969-70951988 | Msa0519020:CDS | 40.0% | |
| GTGCAGACAGGAGAATATTT+GGG | + | chr3_4:70951991-70952010 | Msa0519020:CDS | 40.0% | |
| ! | GGTCGACTTCAACTTGTTTA+TGG | + | chr3_4:70952088-70952107 | Msa0519020:CDS | 40.0% |
| TAGTGCAAGAAACTTCAGGT+GGG | - | chr3_4:70952319-70952338 | None:intergenic | 40.0% | |
| ATAGTGCAAGAAACTTCAGG+TGG | - | chr3_4:70952320-70952339 | None:intergenic | 40.0% | |
| TCACAGGTAACTTGAGCAAT+TGG | - | chr3_4:70952380-70952399 | None:intergenic | 40.0% | |
| ACCTGTGAACTTCAGTGAAT+TGG | + | chr3_4:70952392-70952411 | Msa0519020:intron | 40.0% | |
| TCCAATTCACTGAAGTTCAC+AGG | - | chr3_4:70952396-70952415 | None:intergenic | 40.0% | |
| GTGAGATAATAGAATGGTGG+CGG | - | chr3_4:70952473-70952492 | None:intergenic | 40.0% | |
| GGTGTGAGATAATAGAATGG+TGG | - | chr3_4:70952476-70952495 | None:intergenic | 40.0% | |
| CATGGGCAAAACAAATGAGA+TGG | + | chr3_4:70952701-70952720 | Msa0519020:intron | 40.0% | |
| GGCAAAACAAATGAGATGGT+TGG | + | chr3_4:70952705-70952724 | Msa0519020:intron | 40.0% | |
| ! | GGACAGAACTTCATGCTTTT+GGG | + | chr3_4:70953121-70953140 | Msa0519020:CDS | 40.0% |
| GGCTACAACGACAAATTAGA+TGG | - | chr3_4:70953622-70953641 | None:intergenic | 40.0% | |
| ! | TAATTTGTCGTTGTAGCCTG+AGG | + | chr3_4:70953624-70953643 | Msa0519020:three_prime_UTR | 40.0% |
| GCTATTCAGACAAGAAAGCG+AGG | + | chr3_4:70948041-70948060 | Msa0519020:five_prime_UTR | 45.0% | |
| ACGGAGATTGTTAACTTCGC+GGG | - | chr3_4:70948197-70948216 | None:intergenic | 45.0% | |
| GACGGAGATTGTTAACTTCG+CGG | - | chr3_4:70948198-70948217 | None:intergenic | 45.0% | |
| ! | GAAATCTTCGGTGTAACAGC+AGG | - | chr3_4:70948550-70948569 | None:intergenic | 45.0% |
| ACCGAAGATTTCACGGTCAT+CGG | + | chr3_4:70948558-70948577 | Msa0519020:CDS | 45.0% | |
| ATTTCACGGTCATCGGGAAA+AGG | + | chr3_4:70948565-70948584 | Msa0519020:CDS | 45.0% | |
| ! | TTCCGAAGTAGCTGTTTCGT+CGG | + | chr3_4:70948594-70948613 | Msa0519020:CDS | 45.0% |
| AACCGACGAAACAGCTACTT+CGG | - | chr3_4:70948599-70948618 | None:intergenic | 45.0% | |
| CATACTTCTTCGGTTAGTGG+AGG | + | chr3_4:70948619-70948638 | Msa0519020:CDS | 45.0% | |
| TGTCGGACACTGATACATGT+CGG | + | chr3_4:70949379-70949398 | Msa0519020:intron | 45.0% | |
| GTCAGCACAAGAGGAAATTG+CGG | + | chr3_4:70949855-70949874 | Msa0519020:CDS | 45.0% | |
| ! | GATAGAGAAGCATACTCACG+AGG | - | chr3_4:70950416-70950435 | None:intergenic | 45.0% |
| ! | TTGCAGTGCTTTGGATGGAT+TGG | + | chr3_4:70950661-70950680 | Msa0519020:intron | 45.0% |
| !! | TGGATGGATTGGTCAACTTC+TGG | + | chr3_4:70950672-70950691 | Msa0519020:CDS | 45.0% |
| ! | TTCTGGAAAGTCCAAGCCAA+AGG | + | chr3_4:70950689-70950708 | Msa0519020:CDS | 45.0% |
| TCTGGAAAGTCCAAGCCAAA+GGG | + | chr3_4:70950690-70950709 | Msa0519020:CDS | 45.0% | |
| CAGCAGAAGGAGCAACTATA+GGG | - | chr3_4:70950878-70950897 | None:intergenic | 45.0% | |
| TCAGCAGAAGGAGCAACTAT+AGG | - | chr3_4:70950879-70950898 | None:intergenic | 45.0% | |
| GAGAATAGACTGTCAGCAGA+AGG | - | chr3_4:70950891-70950910 | None:intergenic | 45.0% | |
| !! | TTGAATGCGAGGTTTTGGTG+TGG | + | chr3_4:70951195-70951214 | Msa0519020:intron | 45.0% |
| ATTGTGCGTCCCAAAAACAG+AGG | + | chr3_4:70951507-70951526 | Msa0519020:CDS | 45.0% | |
| !! | TGGCCATCTCCTCTGTTTTT+GGG | - | chr3_4:70951519-70951538 | None:intergenic | 45.0% |
| GATGGCCAGAAGATATAGCT+TGG | + | chr3_4:70951531-70951550 | Msa0519020:CDS | 45.0% | |
| AGAAGATATAGCTTGGCACC+CGG | + | chr3_4:70951538-70951557 | Msa0519020:CDS | 45.0% | |
| AAAAGAGCCTGTTTCCTTCC+GGG | - | chr3_4:70951559-70951578 | None:intergenic | 45.0% | |
| GAAAAGAGCCTGTTTCCTTC+CGG | - | chr3_4:70951560-70951579 | None:intergenic | 45.0% | |
| AGCAGGATGATGAGGACAAA+TGG | + | chr3_4:70951880-70951899 | Msa0519020:CDS | 45.0% | |
| AGATTCCTGTGCAATGGTCT+TGG | - | chr3_4:70951909-70951928 | None:intergenic | 45.0% | |
| GGTGCAGACAGGAGAATATT+TGG | + | chr3_4:70951990-70952009 | Msa0519020:CDS | 45.0% | |
| ! | TTTGGGTTTGATGTTGGTGC+AGG | + | chr3_4:70952008-70952027 | Msa0519020:CDS | 45.0% |
| AAGTTGAAGTCGACCGGATT+GGG | - | chr3_4:70952083-70952102 | None:intergenic | 45.0% | |
| CCACGCAACTACTGAATCAT+GGG | - | chr3_4:70952731-70952750 | None:intergenic | 45.0% | |
| CATCCACCCCCTTCAATATA+AGG | + | chr3_4:70952753-70952772 | Msa0519020:intron | 45.0% | |
| TGTCCTTATATTGAAGGGGG+TGG | - | chr3_4:70952759-70952778 | None:intergenic | 45.0% | |
| ! | CGGACAGAACTTCATGCTTT+TGG | + | chr3_4:70953120-70953139 | Msa0519020:CDS | 45.0% |
| ! | CAGAACTTCATGCTTTTGGG+TGG | + | chr3_4:70953124-70953143 | Msa0519020:CDS | 45.0% |
| ! | CAGCTCTGATTAATCAGGCT+TGG | + | chr3_4:70953172-70953191 | Msa0519020:CDS | 45.0% |
| GCTCACCAGAAAAGAGTCTT+TGG | + | chr3_4:70953294-70953313 | Msa0519020:CDS | 45.0% | |
| ! | AGGCTCCAAAGACTCTTTTC+TGG | - | chr3_4:70953302-70953321 | None:intergenic | 45.0% |
| !! | AAAGAGTCTTTGGAGCCTTG+TGG | + | chr3_4:70953304-70953323 | Msa0519020:CDS | 45.0% |
| AGGAATAGACTGAAGCCACA+AGG | - | chr3_4:70953322-70953341 | None:intergenic | 45.0% | |
| TTCTGTCTCCATCCTTCTGT+TGG | + | chr3_4:70953403-70953422 | Msa0519020:three_prime_UTR | 45.0% | |
| ATTCAGCACCAACAGAAGGA+TGG | - | chr3_4:70953414-70953433 | None:intergenic | 45.0% | |
| ! | GGAAAGGCATGCTTAGATGT+TGG | + | chr3_4:70953577-70953596 | Msa0519020:three_prime_UTR | 45.0% |
| AAGACGTGATGTATCACCTC+AGG | - | chr3_4:70953643-70953662 | None:intergenic | 45.0% | |
| !!! | AAATATATATTTTTAGAAAA+TGG | - | chr3_4:70950339-70950358 | None:intergenic | 5.0% |
| TGGTATAGGCAAGACGGTGA+CGG | - | chr3_4:70948216-70948235 | None:intergenic | 50.0% | |
| CCCGATGACCGTGAAATCTT+CGG | - | chr3_4:70948562-70948581 | None:intergenic | 50.0% | |
| CCGAAGATTTCACGGTCATC+GGG | + | chr3_4:70948559-70948578 | Msa0519020:CDS | 50.0% | |
| CACTGACATCAGACACGCAT+TGG | + | chr3_4:70948876-70948895 | Msa0519020:intron | 50.0% | |
| GTCGGACACTGATACATGTC+GGG | + | chr3_4:70949380-70949399 | Msa0519020:intron | 50.0% | |
| AGCTTTCCAAGCAGCTCTTG+CGG | - | chr3_4:70949558-70949577 | None:intergenic | 50.0% | |
| GCTGGGAGATGAAAAGAGAC+AGG | - | chr3_4:70950014-70950033 | None:intergenic | 50.0% | |
| !! | TTTTGGCTGCAGAAGGCACA+AGG | + | chr3_4:70950034-70950053 | Msa0519020:intron | 50.0% |
| ATACAACAGAGGCCTCGCAT+AGG | - | chr3_4:70950272-70950291 | None:intergenic | 50.0% | |
| !! | TTGGGAGTGTTGCAGTGCTT+TGG | + | chr3_4:70950652-70950671 | Msa0519020:intron | 50.0% |
| ! | GAGTGTTGCAGTGCTTTGGA+TGG | + | chr3_4:70950656-70950675 | Msa0519020:intron | 50.0% |
| AGCTCACATAAGCTCGACCT+AGG | - | chr3_4:70950938-70950957 | None:intergenic | 50.0% | |
| AGCTCTTGTGAGCTTGAGCT+AGG | + | chr3_4:70951147-70951166 | Msa0519020:intron | 50.0% | |
| CGTCCCAAAAACAGAGGAGA+TGG | + | chr3_4:70951513-70951532 | Msa0519020:CDS | 50.0% | |
| ! | CTGGCCATCTCCTCTGTTTT+TGG | - | chr3_4:70951520-70951539 | None:intergenic | 50.0% |
| GGGTGCCAAGCTATATCTTC+TGG | - | chr3_4:70951539-70951558 | None:intergenic | 50.0% | |
| AGAGGACAAGCCCCATGTTA+AGG | + | chr3_4:70951770-70951789 | Msa0519020:CDS | 50.0% | |
| GAGGACAAGCCCCATGTTAA+GGG | + | chr3_4:70951771-70951790 | Msa0519020:CDS | 50.0% | |
| TGTTATCTGCAGGTGCAGAC+AGG | + | chr3_4:70951979-70951998 | Msa0519020:CDS | 50.0% | |
| ! | CATGAGTGTCGTTCCCAATC+CGG | + | chr3_4:70952067-70952086 | Msa0519020:CDS | 50.0% |
| ! | CAAGTTGAAGTCGACCGGAT+TGG | - | chr3_4:70952084-70952103 | None:intergenic | 50.0% |
| CCCATGATTCAGTAGTTGCG+TGG | + | chr3_4:70952728-70952747 | Msa0519020:intron | 50.0% | |
| GCCACGCAACTACTGAATCA+TGG | - | chr3_4:70952732-70952751 | None:intergenic | 50.0% | |
| ! | AATCAGGCTTGGTCTCCTGA+TGG | + | chr3_4:70953183-70953202 | Msa0519020:CDS | 50.0% |
| !! | TCCAAACTGGCTCGTCTTCG+AGG | + | chr3_4:70948379-70948398 | Msa0519020:CDS | 55.0% |
| ACCTCGAAGACGAGCCAGTT+TGG | - | chr3_4:70948383-70948402 | None:intergenic | 55.0% | |
| GTTCTTCCGCAAGAGCTGCT+TGG | + | chr3_4:70949549-70949568 | Msa0519020:intron | 55.0% | |
| !! | TCCCAGCTTTTGGCTGCAGA+AGG | + | chr3_4:70950027-70950046 | Msa0519020:intron | 55.0% |
| GCCTTCTGCAGCCAAAAGCT+GGG | - | chr3_4:70950031-70950050 | None:intergenic | 55.0% | |
| TGCCTTCTGCAGCCAAAAGC+TGG | - | chr3_4:70950032-70950051 | None:intergenic | 55.0% | |
| TCAGGGCATACCCTTTGGCT+TGG | - | chr3_4:70950703-70950722 | None:intergenic | 55.0% | |
| GATATAGCTTGGCACCCGGA+AGG | + | chr3_4:70951542-70951561 | Msa0519020:CDS | 55.0% | |
| TGTTGTACTTTGGCGCGAGC+AGG | + | chr3_4:70951863-70951882 | Msa0519020:CDS | 55.0% | |
| GGAAGCCAAGACCATTGCAC+AGG | + | chr3_4:70951901-70951920 | Msa0519020:CDS | 55.0% | |
| ! | TCTGCTGTCATGGGTGTTGC+TGG | + | chr3_4:70951936-70951955 | Msa0519020:CDS | 55.0% |
| ! | AGGCTATGACGCACTGACGC+AGG | + | chr3_4:70949204-70949223 | Msa0519020:intron | 60.0% |
| CTTGGCACCCGGAAGGAAAC+AGG | + | chr3_4:70951549-70951568 | Msa0519020:CDS | 60.0% | |
| TTGGCGCGAGCAGGATGATG+AGG | + | chr3_4:70951872-70951891 | Msa0519020:CDS | 60.0% | |
| !! | TGGTGGCGGTCAAGTAGCGT+GGG | - | chr3_4:70952459-70952478 | None:intergenic | 60.0% |
| !! | ATGGTGGCGGTCAAGTAGCG+TGG | - | chr3_4:70952460-70952479 | None:intergenic | 60.0% |
| TCCGCACGACTGCCTATGCG+AGG | + | chr3_4:70950257-70950276 | Msa0519020:intron | 65.0% | |
| GCCTCGCATAGGCAGTCGTG+CGG | - | chr3_4:70950261-70950280 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 70947995 | 70953697 | 70947995 | ID=Msa0519020;Name=Msa0519020 |
| chr3_4 | mRNA | 70947995 | 70953697 | 70947995 | ID=Msa0519020-mRNA-1;Parent=Msa0519020;Name=Msa0519020-mRNA-1;_AED=0.04;_eAED=0.04;_QI=126|1|1|1|1|1|7|299|517 |
| chr3_4 | exon | 70947995 | 70948243 | 70947995 | ID=Msa0519020-mRNA-1:exon:19419;Parent=Msa0519020-mRNA-1 |
| chr3_4 | exon | 70948343 | 70948712 | 70948343 | ID=Msa0519020-mRNA-1:exon:19420;Parent=Msa0519020-mRNA-1 |
| chr3_4 | exon | 70949765 | 70949921 | 70949765 | ID=Msa0519020-mRNA-1:exon:19421;Parent=Msa0519020-mRNA-1 |
| chr3_4 | exon | 70950667 | 70950711 | 70950667 | ID=Msa0519020-mRNA-1:exon:19422;Parent=Msa0519020-mRNA-1 |
| chr3_4 | exon | 70951478 | 70951643 | 70951478 | ID=Msa0519020-mRNA-1:exon:19423;Parent=Msa0519020-mRNA-1 |
| chr3_4 | exon | 70951750 | 70952120 | 70951750 | ID=Msa0519020-mRNA-1:exon:19424;Parent=Msa0519020-mRNA-1 |
| chr3_4 | exon | 70953077 | 70953697 | 70953077 | ID=Msa0519020-mRNA-1:exon:19425;Parent=Msa0519020-mRNA-1 |
| chr3_4 | five_prime_UTR | 70947995 | 70948120 | 70947995 | ID=Msa0519020-mRNA-1:five_prime_utr;Parent=Msa0519020-mRNA-1 |
| chr3_4 | CDS | 70948121 | 70948243 | 70948121 | ID=Msa0519020-mRNA-1:cds;Parent=Msa0519020-mRNA-1 |
| chr3_4 | CDS | 70948343 | 70948712 | 70948343 | ID=Msa0519020-mRNA-1:cds;Parent=Msa0519020-mRNA-1 |
| chr3_4 | CDS | 70949765 | 70949921 | 70949765 | ID=Msa0519020-mRNA-1:cds;Parent=Msa0519020-mRNA-1 |
| chr3_4 | CDS | 70950667 | 70950711 | 70950667 | ID=Msa0519020-mRNA-1:cds;Parent=Msa0519020-mRNA-1 |
| chr3_4 | CDS | 70951478 | 70951643 | 70951478 | ID=Msa0519020-mRNA-1:cds;Parent=Msa0519020-mRNA-1 |
| chr3_4 | CDS | 70951750 | 70952120 | 70951750 | ID=Msa0519020-mRNA-1:cds;Parent=Msa0519020-mRNA-1 |
| chr3_4 | CDS | 70953077 | 70953398 | 70953077 | ID=Msa0519020-mRNA-1:cds;Parent=Msa0519020-mRNA-1 |
| chr3_4 | three_prime_UTR | 70953399 | 70953697 | 70953399 | ID=Msa0519020-mRNA-1:three_prime_utr;Parent=Msa0519020-mRNA-1 |
| Gene Sequence |
| Protein sequence |
