AlfalfaGEDB | Msa0879850

M. sativa cultivar zhongmu-4 / Msa0879850

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0879850	XP_003603477.1	98.377	308	4	1	1	308	1	307	0.0	595

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003220	Msa0879850	0.826604	2.476130e-54	-8.615850e-47
Msa0003270	Msa0879850	0.814207	1.732398e-51	-8.615850e-47
Msa0004060	Msa0879850	0.817040	4.052606e-52	-8.615850e-47
Msa0004540	Msa0879850	0.844602	6.828390e-59	-8.615850e-47
Msa0005000	Msa0879850	-0.804573	2.024989e-49	-8.615850e-47
Msa0006880	Msa0879850	0.813538	2.433637e-51	-8.615850e-47
Msa0008840	Msa0879850	0.820483	6.698111e-53	-8.615850e-47
Msa0010770	Msa0879850	0.825036	5.833671e-54	-8.615850e-47
Msa0012940	Msa0879850	0.842729	2.164370e-58	-8.615850e-47
Msa0020390	Msa0879850	0.821657	3.594032e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0879850	MtrunA17_Chr3g0138531	98.377	308	4	1	1	308	1	307	0.0	595
Msa0879850	MtrunA17_Chr3g0138541	87.107	318	29	3	1	308	1	316	2.57e-99	295

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0879850	AT2G25670.2	60.615	325	104	9	1	308	1	318	1.15e-43	152
Msa0879850	AT2G25670.1	60.615	325	104	9	1	308	1	318	1.15e-43	152
Msa0879850	AT4G32610.1	55.385	325	118	11	1	308	1	315	1.81e-33	125

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Find 102 sgRNAs with CRISPR-Local

Find 176 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAGTTGGCTTTAGCTCT+TGG	0.363128	6_1:-22711169	Msa0879850:three_prime_UTR
AAAGAAGGATAAAGCTTCCA+AGG	0.528000	6_1:-22711501	Msa0879850:CDS
AAAGAGTGAGAGGCGGAGAA+TGG	0.386166	6_1:+22713661	None:intergenic
AAATAAAGGAGATTGAGATC+TGG	0.459992	6_1:+22713594	None:intergenic
AAATACCTTGGGATTCATCT+TGG	0.436144	6_1:+22711941	None:intergenic
AAATGTAAGAAAAGAGTGAG+AGG	0.580119	6_1:+22713651	None:intergenic
AAATTCCTGTATTGATGTAA+AGG	0.499279	6_1:+22711222	None:intergenic
AAGAGTGAGAGGCGGAGAAT+GGG	0.365234	6_1:+22713662	None:intergenic
AAGGACAAGAAGAATAATAA+GGG	0.503226	6_1:-22713263	Msa0879850:CDS
AAGGAGGTGAAAGAGTCTAA+CGG	0.681195	6_1:-22711482	Msa0879850:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATGTAAGAAAAGAGTGAG+AGG	+	chr6_1:22710962-22710981	None:intergenic	30.0%
AATAAAGGAGATTGAGATCT+GGG	+	chr6_1:22711018-22711037	None:intergenic	30.0%
AAATAAAGGAGATTGAGATC+TGG	+	chr6_1:22711019-22711038	None:intergenic	30.0%
CAAGGACAAGAAGAATAATA+AGG	-	chr6_1:22711346-22711365	Msa0879850:CDS	30.0%
TTCTTCCAAATCAACCAAAT+CGG	-	chr6_1:22711370-22711389	Msa0879850:CDS	30.0%
TTTATGTGCTTACTTTGCTT+TGG	-	chr6_1:22712079-22712098	Msa0879850:CDS	30.0%
CTCTGGATAATAAATACCTT+GGG	+	chr6_1:22712683-22712702	None:intergenic	30.0%
CTGCATCTTACATTATTTGT+AGG	-	chr6_1:22712703-22712722	Msa0879850:intron	30.0%
TCAGCGAAAAAAGATGAAAA+TGG	+	chr6_1:22712847-22712866	None:intergenic	30.0%
ATTCGCAAAATTGTATTTGC+AGG	-	chr6_1:22712996-22713015	Msa0879850:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_1	gene	22710880	22713752	22710880	ID=Msa0879850;Name=Msa0879850
chr6_1	mRNA	22710880	22713752	22710880	ID=Msa0879850-mRNA-1;Parent=Msa0879850;Name=Msa0879850-mRNA-1;_AED=0.26;_eAED=0.26;_QI=365\|1\|1\|1\|1\|1\|3\|379\|308
chr6_1	exon	22710880	22711614	22710880	ID=Msa0879850-mRNA-1:exon:6265;Parent=Msa0879850-mRNA-1
chr6_1	exon	22711947	22712217	22711947	ID=Msa0879850-mRNA-1:exon:6264;Parent=Msa0879850-mRNA-1
chr6_1	exon	22713088	22713752	22713088	ID=Msa0879850-mRNA-1:exon:6263;Parent=Msa0879850-mRNA-1
chr6_1	five_prime_UTR	22713388	22713752	22713388	ID=Msa0879850-mRNA-1:five_prime_utr;Parent=Msa0879850-mRNA-1
chr6_1	CDS	22713088	22713387	22713088	ID=Msa0879850-mRNA-1:cds;Parent=Msa0879850-mRNA-1
chr6_1	CDS	22711947	22712217	22711947	ID=Msa0879850-mRNA-1:cds;Parent=Msa0879850-mRNA-1
chr6_1	CDS	22711259	22711614	22711259	ID=Msa0879850-mRNA-1:cds;Parent=Msa0879850-mRNA-1
chr6_1	three_prime_UTR	22710880	22711258	22710880	ID=Msa0879850-mRNA-1:three_prime_utr;Parent=Msa0879850-mRNA-1

Gene Sequence

>Msa0879850

ATGGTTGGTGGTGGAAGCAGAAGAGATGAGGGTTCGTTGGTAATTTCCAACACCAACGTTTTTGCAGCGCTTGATACTTTGAAGAAGAAGAAGAAATCGGACAAGGACAAGAAGAATAATAAGGGTTCTTCCAAATCAACCAAATCGGAATCGGAATCGCAGGCGTTTTGGGCTCCGGCACCGTTGAATGCAACCTCATGGGCTGATGTGGATGACGACGATGATGATTATTATCTGACCACCGCACCGCCTCAATTTTCCGACCCTCAACCCAGTGAGGACAAACCCGAGCATTTTGAGGAATCTGAGAGTGAAGAAGATATTTTAGATGAAGGTGACGAGGAGGTAGAGGAAGAGCAAGATCATGAATCAGAACCAGAGCACACTGTGAAACCTGAACCTGAGGTCAAGAAGAATGCTGAAGTTCCAGCTGCACCAAAGGAGGCCGAACGTCAACTCTCCAAAAAGGAAAGGAAGAAGAAGGAACTTGAAGAGCTTGAGGCTCTTTTAGCTGATTTTGGAGTCACACAGAATGAAAGCAATGATGGTCAAGGCCAAGATGAATCCCAAGGTGCACCTCAGGATAAGAAAGGTGTAGATGGGGATGTAGATGGCGAAAAGAAAGAAATCACTGCTGAGTCCAAGAATGCCAAGAAAAAGAAAAAGAAGGATAAAGCTTCCAAGGAGGTGAAAGAGTCTAACGGTCAGCCCAACACTTCTGATGTTGAAAATGCAGAGGAGGATTCATCTGTTGTTGATGTGAAAGAGCGTCTTAAGAAAGTTGCTTCTATGAGGAAGAAAAAATCCAGTAAAGAAATGGACGCTGCTGCTAGAGCTGCTGCTCAAGAGGCTGCTGCAAGGAACGCAAGGCTTGCTGCCGCTAAGAAGAAAGAGAAGAACCATTACAACCAACAACCTGTGCGGTAA

Protein sequence

>Msa0879850

MVGGGSRRDEGSLVISNTNVFAALDTLKKKKKSDKDKKNNKGSSKSTKSESESQAFWAPAPLNATSWADVDDDDDDYYLTTAPPQFSDPQPSEDKPEHFEESESEEDILDEGDEEVEEEQDHESEPEHTVKPEPEVKKNAEVPAAPKEAERQLSKKERKKKELEELEALLADFGVTQNESNDGQGQDESQGAPQDKKGVDGDVDGEKKEITAESKNAKKKKKKDKASKEVKESNGQPNTSDVENAEEDSSVVDVKERLKKVASMRKKKSSKEMDAAARAAAQEAAARNARLAAAKKKEKNHYNQQPVR*