AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0879850


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0879850 MtrunA17_Chr3g0138531 98.377 308 4 1 1 308 1 307 0.0 595
Msa0879850 MtrunA17_Chr3g0138541 87.107 318 29 3 1 308 1 316 2.57e-99 295
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0879850 AT2G25670.2 60.615 325 104 9 1 308 1 318 1.15e-43 152
Msa0879850 AT2G25670.1 60.615 325 104 9 1 308 1 318 1.15e-43 152
Msa0879850 AT4G32610.1 55.385 325 118 11 1 308 1 315 1.81e-33 125

Find 102 sgRNAs with CRISPR-Local

Find 176 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATCGGAATCGCAGGCGTTT+TGG 0.237603 6_1:-22713217 Msa0879850:CDS
CGATTCCGATTTGGTTGATT+TGG 0.262411 6_1:+22713235 None:intergenic
TTCTTCTTGACCTCAGGTTC+AGG 0.291395 6_1:+22712102 None:intergenic
CAAGGACAAGAAGAATAATA+AGG 0.295710 6_1:-22713264 Msa0879850:CDS
GAGATTGAGATCTGGGATTG+GGG 0.318478 6_1:+22713602 None:intergenic
TATGGCGGATTAATTAGTTT+TGG 0.335384 6_1:-22710987 Msa0879850:three_prime_UTR
AGCAGCGTCCATTTCTTTAC+TGG 0.341268 6_1:+22711358 None:intergenic
GGAGATTGAGATCTGGGATT+GGG 0.342740 6_1:+22713601 None:intergenic
GCTAAAGCCAACTGTTTATT+CGG 0.361954 6_1:+22711175 None:intergenic
AAACAGTTGGCTTTAGCTCT+TGG 0.363128 6_1:-22711169 Msa0879850:three_prime_UTR
CTGCGATTCCGATTCCGATT+TGG 0.363251 6_1:+22713226 None:intergenic
AAGAGTGAGAGGCGGAGAAT+GGG 0.365234 6_1:+22713662 None:intergenic
GTGCTGTGTTGCTACTTATA+TGG 0.365344 6_1:-22710936 Msa0879850:three_prime_UTR
TTTGTGTACTGGGGTTGTTT+TGG 0.368329 6_1:-22711013 Msa0879850:three_prime_UTR
CAGGATAAGAAAGGTGTAGA+TGG 0.373922 6_1:-22711584 Msa0879850:CDS
AAAGAGTGAGAGGCGGAGAA+TGG 0.386166 6_1:+22713661 None:intergenic
TCGGCCTCCTTTGGTGCAGC+TGG 0.386362 6_1:+22712069 None:intergenic
AGTTGACGTTCGGCCTCCTT+TGG 0.387948 6_1:+22712060 None:intergenic
CGAACGTCAACTCTCCAAAA+AGG 0.392328 6_1:-22712049 Msa0879850:CDS
ATGCTCGGGTTTGTCCTCAC+TGG 0.394418 6_1:+22713094 None:intergenic
GGTTTGTCCTCACTGGGTTG+AGG 0.405114 6_1:+22713101 None:intergenic
TTATATAAATAAATAAATAA+AGG 0.412888 6_1:+22713580 None:intergenic
TGAAGGTGACGAGGAGGTAG+AGG 0.413213 6_1:-22712166 Msa0879850:CDS
AATAAAGGAGATTGAGATCT+GGG 0.416008 6_1:+22713595 None:intergenic
GTTTGTCCTCACTGGGTTGA+GGG 0.417417 6_1:+22713102 None:intergenic
TGTTCTCTTCCCAGCTAGCT+AGG 0.423496 6_1:+22713718 None:intergenic
TGCTAGAGCTGCTGCTCAAG+AGG 0.430832 6_1:-22711336 Msa0879850:CDS
GTGATATAACCCTAGCTAGC+TGG 0.431730 6_1:-22713728 Msa0879850:five_prime_UTR
TCAGCATTCTTCTTGACCTC+AGG 0.431890 6_1:+22712096 None:intergenic
TCAGGTTTCACAGTGTGCTC+TGG 0.433555 6_1:+22712120 None:intergenic
AAATACCTTGGGATTCATCT+TGG 0.436144 6_1:+22711941 None:intergenic
GCTCTCCTTTACATCAATAC+AGG 0.436244 6_1:-22711227 Msa0879850:three_prime_UTR
GCACAGGTTGTTGGTTGTAA+TGG 0.445016 6_1:+22711264 None:intergenic
AGATTGAGATCTGGGATTGG+GGG 0.451081 6_1:+22713603 None:intergenic
ATTGAGATCTGGGATTGGGG+GGG 0.457421 6_1:+22713605 None:intergenic
AAATAAAGGAGATTGAGATC+TGG 0.459992 6_1:+22713594 None:intergenic
TGCTCGGGTTTGTCCTCACT+GGG 0.461528 6_1:+22713095 None:intergenic
CAAATCAACCAAATCGGAAT+CGG 0.464697 6_1:-22713234 Msa0879850:CDS
TGTATTTGCAGGTGCACCTC+AGG 0.467621 6_1:-22711603 Msa0879850:intron
GTTAGACTCTTTCACCTCCT+TGG 0.471040 6_1:+22711484 None:intergenic
TTGAATCGCGTTGTTAAGAA+TGG 0.471740 6_1:-22713384 Msa0879850:exon
TTCTTCCAAATCAACCAAAT+CGG 0.473799 6_1:-22713240 Msa0879850:CDS
GGTGTAGATGGGGATGTAGA+TGG 0.477288 6_1:-22711572 Msa0879850:CDS
AGGAGATTGAGATCTGGGAT+TGG 0.478847 6_1:+22713600 None:intergenic
GATTGAGATCTGGGATTGGG+GGG 0.487047 6_1:+22713604 None:intergenic
GTTCTTCTCTTTCTTCTTAG+CGG 0.490710 6_1:+22711286 None:intergenic
AGACAATATCTCAAGTCCAT+TGG 0.492455 6_1:+22711126 None:intergenic
TTAAGAAAGTTGCTTCTATG+AGG 0.492845 6_1:-22711391 Msa0879850:CDS
AAATTCCTGTATTGATGTAA+AGG 0.499279 6_1:+22711222 None:intergenic
AAGGACAAGAAGAATAATAA+GGG 0.503226 6_1:-22713263 Msa0879850:CDS
GTTCTCTTCCCAGCTAGCTA+GGG 0.507395 6_1:+22713719 None:intergenic
CACCGTTGAATGCAACCTCA+TGG 0.509050 6_1:-22713187 Msa0879850:CDS
GGGAAATCGAGATTAGGGTT+TGG 0.509305 6_1:+22713625 None:intergenic
CTGCTCAAGAGGCTGCTGCA+AGG 0.511826 6_1:-22711325 Msa0879850:CDS
TGATATAACCCTAGCTAGCT+GGG 0.512292 6_1:-22713727 Msa0879850:five_prime_UTR
AGGCGGAGAATGGGATATAG+AGG 0.521569 6_1:+22713671 None:intergenic
TGAACAAACCTCAAAATGCT+CGG 0.523575 6_1:+22713079 None:intergenic
GAGGTTGCATTCAACGGTGC+CGG 0.524888 6_1:+22713191 None:intergenic
TGGTGGAAGCAGAAGAGATG+AGG 0.527011 6_1:-22713357 Msa0879850:CDS
AAAGAAGGATAAAGCTTCCA+AGG 0.528000 6_1:-22711501 Msa0879850:CDS
GTCCTCACTGGGTTGAGGGT+CGG 0.528008 6_1:+22713106 None:intergenic
AGGATAAGAAAGGTGTAGAT+GGG 0.528793 6_1:-22711583 Msa0879850:CDS
CAAATCGGAATCGGAATCGC+AGG 0.529120 6_1:-22713225 Msa0879850:CDS
GCCCATGAGGTTGCATTCAA+CGG 0.535338 6_1:+22713185 None:intergenic
TATTACTAGTCGTATTCCAA+TGG 0.542649 6_1:-22711142 Msa0879850:three_prime_UTR
GAACAAACCTCAAAATGCTC+GGG 0.543027 6_1:+22713080 None:intergenic
AGGCTGCTGCAAGGAACGCA+AGG 0.544412 6_1:-22711316 Msa0879850:CDS
TGCAACCTCATGGGCTGATG+TGG 0.545900 6_1:-22713177 Msa0879850:CDS
ACACAGAATGAAAGCAATGA+TGG 0.546801 6_1:-22711970 Msa0879850:CDS
GAAGGAACTTGAAGAGCTTG+AGG 0.550464 6_1:-22712016 Msa0879850:CDS
ACCGTTGAATGCAACCTCAT+GGG 0.552821 6_1:-22713186 Msa0879850:CDS
CAGAAGAGATGAGGGTTCGT+TGG 0.554071 6_1:-22713348 Msa0879850:CDS
GGAAAATTGAGGCGGTGCGG+TGG 0.568741 6_1:+22713127 None:intergenic
TTGTTAAGAATGGTTGGTGG+TGG 0.570771 6_1:-22713374 Msa0879850:exon
TCTACACCTTTCTTATCCTG+AGG 0.571217 6_1:+22711587 None:intergenic
TGAAGTTCCAGCTGCACCAA+AGG 0.576041 6_1:-22712076 Msa0879850:CDS
GGTTGAGGGTCGGAAAATTG+AGG 0.576339 6_1:+22713116 None:intergenic
AAATGTAAGAAAAGAGTGAG+AGG 0.580119 6_1:+22713651 None:intergenic
TGTAAGAAAAGAGTGAGAGG+CGG 0.582582 6_1:+22713654 None:intergenic
TGATGTTGAAAATGCAGAGG+AGG 0.584727 6_1:-22711444 Msa0879850:CDS
ATCGCGTTGTTAAGAATGGT+TGG 0.586496 6_1:-22713380 Msa0879850:exon
CACTGTGAAACCTGAACCTG+AGG 0.592278 6_1:-22712112 Msa0879850:CDS
GGTGCACCTCAGGATAAGAA+AGG 0.599338 6_1:-22711593 Msa0879850:CDS
AGTTCCAGCTGCACCAAAGG+AGG 0.599579 6_1:-22712073 Msa0879850:CDS
GATGATGCCGAATAAACAGT+TGG 0.602592 6_1:-22711182 Msa0879850:three_prime_UTR
GGATAAGAAAGGTGTAGATG+GGG 0.604616 6_1:-22711582 Msa0879850:CDS
TATTGATGTAAAGGAGAGCA+AGG 0.606781 6_1:+22711231 None:intergenic
AATGAAAGCAATGATGGTCA+AGG 0.616215 6_1:-22711964 Msa0879850:CDS
GGTGGAAGCAGAAGAGATGA+GGG 0.627510 6_1:-22713356 Msa0879850:CDS
TTTAGATGAAGGTGACGAGG+AGG 0.634428 6_1:-22712172 Msa0879850:CDS
GTCGGAAAATTGAGGCGGTG+CGG 0.637381 6_1:+22713124 None:intergenic
TTCTGATGTTGAAAATGCAG+AGG 0.645244 6_1:-22711447 Msa0879850:CDS
GTCATCCACATCAGCCCATG+AGG 0.661130 6_1:+22713172 None:intergenic
GAAGAAGAAGAAATCGGACA+AGG 0.668190 6_1:-22713282 Msa0879850:CDS
TTCCGACCCTCAACCCAGTG+AGG 0.672447 6_1:-22713108 Msa0879850:CDS
CAAGGCCAAGATGAATCCCA+AGG 0.675177 6_1:-22711946 Msa0879850:intron
GCGTTGTTAAGAATGGTTGG+TGG 0.676274 6_1:-22713377 Msa0879850:exon
TCGGCATCATCATATGAACA+AGG 0.678182 6_1:+22711194 None:intergenic
AAGGAGGTGAAAGAGTCTAA+CGG 0.681195 6_1:-22711482 Msa0879850:CDS
ATTACAACCAACAACCTGTG+CGG 0.714310 6_1:-22711262 Msa0879850:CDS
TGAGGGTCGGAAAATTGAGG+CGG 0.719908 6_1:+22713119 None:intergenic
GAAGGATAAAGCTTCCAAGG+AGG 0.726948 6_1:-22711498 Msa0879850:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATATAAATAAATAAATAA+AGG + chr6_1:22711033-22711052 None:intergenic 0.0%
!! AAAAACAGTTAAAAATAAAT+TGG + chr6_1:22713726-22713745 None:intergenic 10.0%
!!! AATTTATTTTTAACTGTTTT+TGG - chr6_1:22713725-22713744 Msa0879850:five_prime_UTR 10.0%
!! ATGAAAAAAATTATAAATGC+TGG + chr6_1:22712908-22712927 None:intergenic 15.0%
!!! ATATTGTCTTAAAACTTTTT+TGG - chr6_1:22713498-22713517 Msa0879850:five_prime_UTR 15.0%
!!! TAAGTATTTGAAAAGCTTTT+CGG + chr6_1:22712005-22712024 None:intergenic 20.0%
!!! ACATTTTGAAGATTTATCTT+AGG + chr6_1:22712042-22712061 None:intergenic 20.0%
!!! AATAAATAGGTTTTGTTACA+TGG - chr6_1:22712180-22712199 Msa0879850:CDS 20.0%
!!! ATAAATAGGTTTTGTTACAT+GGG - chr6_1:22712181-22712200 Msa0879850:CDS 20.0%
!! AGTTTATCATTACTATTCAA+AGG + chr6_1:22712254-22712273 None:intergenic 20.0%
!! TGAATAGTAATGATAAACTT+TGG - chr6_1:22712255-22712274 Msa0879850:intron 20.0%
!! AAATTGCAAAGTAAAAAATC+TGG + chr6_1:22712388-22712407 None:intergenic 20.0%
!!! TTTACTTTGCAATTTTTAAC+AGG - chr6_1:22712393-22712412 Msa0879850:intron 20.0%
!! TTACATTATTTGTAGGATTA+TGG - chr6_1:22712710-22712729 Msa0879850:intron 20.0%
! TTTGAAGAAGAAGAAGAAAT+CGG - chr6_1:22711322-22711341 Msa0879850:CDS 25.0%
! AAGGACAAGAAGAATAATAA+GGG - chr6_1:22711347-22711366 Msa0879850:CDS 25.0%
! ACAATAACAAAAAAACATCC+AGG + chr6_1:22711603-22711622 None:intergenic 25.0%
!!! ATGTCATTTTTCTGTTTGTT+TGG - chr6_1:22711657-22711676 Msa0879850:intron 25.0%
!! TTGATGACTATTGAGATTAA+GGG - chr6_1:22711752-22711771 Msa0879850:intron 25.0%
!! ATGAACACAAGTTGAAAATA+AGG - chr6_1:22711957-22711976 Msa0879850:CDS 25.0%
!! ACAAGTTGAAAATAAGGTAT+AGG - chr6_1:22711963-22711982 Msa0879850:CDS 25.0%
! TATCTTAGGATAAAACATGT+TGG + chr6_1:22712028-22712047 None:intergenic 25.0%
! ACACAATTATCAAAAAGATC+AGG + chr6_1:22712128-22712147 None:intergenic 25.0%
!! TTGATAATTGTGTTTCTTTG+AGG - chr6_1:22712135-22712154 Msa0879850:CDS 25.0%
! TGTCTATGCGATAAATAAAT+AGG - chr6_1:22712167-22712186 Msa0879850:CDS 25.0%
!!! GAAGAAGATATTTTAGATGA+AGG - chr6_1:22712427-22712446 Msa0879850:intron 25.0%
!!! TATGGTTTATTTTTGAGTTC+AGG - chr6_1:22712728-22712747 Msa0879850:intron 25.0%
!! ATCCTTCTTTTTCTTTTTCT+TGG + chr6_1:22713099-22713118 None:intergenic 25.0%
! GAAAAAATCCAGTAAAGAAA+TGG - chr6_1:22713244-22713263 Msa0879850:CDS 25.0%
!! AAATTCCTGTATTGATGTAA+AGG + chr6_1:22713391-22713410 None:intergenic 25.0%
AAATGTAAGAAAAGAGTGAG+AGG + chr6_1:22710962-22710981 None:intergenic 30.0%
AATAAAGGAGATTGAGATCT+GGG + chr6_1:22711018-22711037 None:intergenic 30.0%
AAATAAAGGAGATTGAGATC+TGG + chr6_1:22711019-22711038 None:intergenic 30.0%
CAAGGACAAGAAGAATAATA+AGG - chr6_1:22711346-22711365 Msa0879850:CDS 30.0%
TTCTTCCAAATCAACCAAAT+CGG - chr6_1:22711370-22711389 Msa0879850:CDS 30.0%
!! TGTTGTTGTTTATTGATTCC+TGG - chr6_1:22711582-22711601 Msa0879850:CDS 30.0%
!! GTTGATGACTATTGAGATTA+AGG - chr6_1:22711751-22711770 Msa0879850:intron 30.0%
TTTATGTGCTTACTTTGCTT+TGG - chr6_1:22712079-22712098 Msa0879850:CDS 30.0%
! TTATCTGTGTTTTCTTTGTG+TGG - chr6_1:22712326-22712345 Msa0879850:intron 30.0%
CTCTGGATAATAAATACCTT+GGG + chr6_1:22712683-22712702 None:intergenic 30.0%
CTGCATCTTACATTATTTGT+AGG - chr6_1:22712703-22712722 Msa0879850:intron 30.0%
TCAGCGAAAAAAGATGAAAA+TGG + chr6_1:22712847-22712866 None:intergenic 30.0%
ATTCGCAAAATTGTATTTGC+AGG - chr6_1:22712996-22713015 Msa0879850:intron 30.0%
! TTTCTTTTTCTTGGCATTCT+TGG + chr6_1:22713090-22713109 None:intergenic 30.0%
TGCCAAGAAAAAGAAAAAGA+AGG - chr6_1:22713094-22713113 Msa0879850:CDS 30.0%
!!! TTTTCAACATCAGAAGTGTT+GGG + chr6_1:22713158-22713177 None:intergenic 30.0%
!! ATTTTCAACATCAGAAGTGT+TGG + chr6_1:22713159-22713178 None:intergenic 30.0%
TTAAGAAAGTTGCTTCTATG+AGG - chr6_1:22713219-22713238 Msa0879850:CDS 30.0%
TATTACTAGTCGTATTCCAA+TGG - chr6_1:22713468-22713487 Msa0879850:five_prime_UTR 30.0%
!!! ATGAACTACTTTTTGTGTAC+TGG - chr6_1:22713586-22713605 Msa0879850:five_prime_UTR 30.0%
!!! TGAACTACTTTTTGTGTACT+GGG - chr6_1:22713587-22713606 Msa0879850:five_prime_UTR 30.0%
!!! TATGGCGGATTAATTAGTTT+TGG - chr6_1:22713623-22713642 Msa0879850:five_prime_UTR 30.0%
TTGAATCGCGTTGTTAAGAA+TGG - chr6_1:22711226-22711245 Msa0879850:three_prime_UTR 35.0%
CAAATCAACCAAATCGGAAT+CGG - chr6_1:22711376-22711395 Msa0879850:CDS 35.0%
TGAACAAACCTCAAAATGCT+CGG + chr6_1:22711534-22711553 None:intergenic 35.0%
TCACTTTATGTGCTTAGCTA+AGG - chr6_1:22711631-22711650 Msa0879850:intron 35.0%
TGGTTATGCCTGTTCTTATT+AGG - chr6_1:22712099-22712118 Msa0879850:CDS 35.0%
TCAGGTATCCTAATAAGAAC+AGG + chr6_1:22712110-22712129 None:intergenic 35.0%
TTGTGTGGTTATTGCTTGAA+TGG - chr6_1:22712341-22712360 Msa0879850:intron 35.0%
!! TATTTTAGATGAAGGTGACG+AGG - chr6_1:22712435-22712454 Msa0879850:intron 35.0%
! CTTCTTCTTCCTTTCCTTTT+TGG + chr6_1:22712578-22712597 None:intergenic 35.0%
CAAAAAGGAAAGGAAGAAGA+AGG - chr6_1:22712576-22712595 Msa0879850:intron 35.0%
ACACAGAATGAAAGCAATGA+TGG - chr6_1:22712640-22712659 Msa0879850:intron 35.0%
AATGAAAGCAATGATGGTCA+AGG - chr6_1:22712646-22712665 Msa0879850:intron 35.0%
AAATACCTTGGGATTCATCT+TGG + chr6_1:22712672-22712691 None:intergenic 35.0%
! GCTCTGGATAATAAATACCT+TGG + chr6_1:22712684-22712703 None:intergenic 35.0%
AATAATGTAAGATGCAGCTC+TGG + chr6_1:22712700-22712719 None:intergenic 35.0%
!!! TTTCATCTTTTTTCGCTGAC+AGG - chr6_1:22712848-22712867 Msa0879850:intron 35.0%
! AGGATAAGAAAGGTGTAGAT+GGG - chr6_1:22713027-22713046 Msa0879850:intron 35.0%
AAAGAAGGATAAAGCTTCCA+AGG - chr6_1:22713109-22713128 Msa0879850:CDS 35.0%
TTCTGATGTTGAAAATGCAG+AGG - chr6_1:22713163-22713182 Msa0879850:CDS 35.0%
GTTCTTCTCTTTCTTCTTAG+CGG + chr6_1:22713327-22713346 None:intergenic 35.0%
TATTGATGTAAAGGAGAGCA+AGG + chr6_1:22713382-22713401 None:intergenic 35.0%
GCTAAAGCCAACTGTTTATT+CGG + chr6_1:22713438-22713457 None:intergenic 35.0%
AGACAATATCTCAAGTCCAT+TGG + chr6_1:22713487-22713506 None:intergenic 35.0%
!!! GAACTACTTTTTGTGTACTG+GGG - chr6_1:22713588-22713607 Msa0879850:five_prime_UTR 35.0%
TGATATAACCCTAGCTAGCT+GGG - chr6_1:22710883-22710902 Msa0879850:three_prime_UTR 40.0%
TGTAAGAAAAGAGTGAGAGG+CGG + chr6_1:22710959-22710978 None:intergenic 40.0%
ATCGCGTTGTTAAGAATGGT+TGG - chr6_1:22711230-22711249 Msa0879850:three_prime_UTR 40.0%
!! TTGTTAAGAATGGTTGGTGG+TGG - chr6_1:22711236-22711255 Msa0879850:three_prime_UTR 40.0%
GAAGAAGAAGAAATCGGACA+AGG - chr6_1:22711328-22711347 Msa0879850:CDS 40.0%
!! CGATTCCGATTTGGTTGATT+TGG + chr6_1:22711378-22711397 None:intergenic 40.0%
GAACAAACCTCAAAATGCTC+GGG + chr6_1:22711533-22711552 None:intergenic 40.0%
AAGCACATAAAGTGAGCAAC+AGG + chr6_1:22711626-22711645 None:intergenic 40.0%
!! CTTTTTGGAGAGTTGACGTT+CGG + chr6_1:22712563-22712582 None:intergenic 40.0%
GTCAACTCTCCAAAAAGGAA+AGG - chr6_1:22712566-22712585 Msa0879850:intron 40.0%
!! GAGGCTCTTTTAGCTGATTT+TGG - chr6_1:22712613-22712632 Msa0879850:intron 40.0%
TAGAACGAATGCATGAGCAA+CGG + chr6_1:22712765-22712784 None:intergenic 40.0%
ATGCATTCGTTCTACACTAC+TGG - chr6_1:22712771-22712790 Msa0879850:intron 40.0%
! CTGGTCTTTCTTTCTCTGTT+TGG - chr6_1:22712790-22712809 Msa0879850:intron 40.0%
CTAGATCTTTGAGCAAAAGC+AGG + chr6_1:22712822-22712841 None:intergenic 40.0%
TCTACACCTTTCTTATCCTG+AGG + chr6_1:22713026-22713045 None:intergenic 40.0%
! CAGGATAAGAAAGGTGTAGA+TGG - chr6_1:22713026-22713045 Msa0879850:intron 40.0%
! GGATAAGAAAGGTGTAGATG+GGG - chr6_1:22713028-22713047 Msa0879850:intron 40.0%
AAGGAGGTGAAAGAGTCTAA+CGG - chr6_1:22713128-22713147 Msa0879850:CDS 40.0%
TGATGTTGAAAATGCAGAGG+AGG - chr6_1:22713166-22713185 Msa0879850:CDS 40.0%
ATTACAACCAACAACCTGTG+CGG - chr6_1:22713348-22713367 Msa0879850:CDS 40.0%
GCTCTCCTTTACATCAATAC+AGG - chr6_1:22713383-22713402 Msa0879850:exon 40.0%
TCGGCATCATCATATGAACA+AGG + chr6_1:22713419-22713438 None:intergenic 40.0%
GATGATGCCGAATAAACAGT+TGG - chr6_1:22713428-22713447 Msa0879850:five_prime_UTR 40.0%
!! AAACAGTTGGCTTTAGCTCT+TGG - chr6_1:22713441-22713460 Msa0879850:five_prime_UTR 40.0%
! TTTGTGTACTGGGGTTGTTT+TGG - chr6_1:22713597-22713616 Msa0879850:five_prime_UTR 40.0%
! GTGCTGTGTTGCTACTTATA+TGG - chr6_1:22713674-22713693 Msa0879850:five_prime_UTR 40.0%
GTGATATAACCCTAGCTAGC+TGG - chr6_1:22710882-22710901 Msa0879850:three_prime_UTR 45.0%
GGGAAATCGAGATTAGGGTT+TGG + chr6_1:22710988-22711007 None:intergenic 45.0%
! AGATTGAGATCTGGGATTGG+GGG + chr6_1:22711010-22711029 None:intergenic 45.0%
! GAGATTGAGATCTGGGATTG+GGG + chr6_1:22711011-22711030 None:intergenic 45.0%
! GGAGATTGAGATCTGGGATT+GGG + chr6_1:22711012-22711031 None:intergenic 45.0%
! AGGAGATTGAGATCTGGGAT+TGG + chr6_1:22711013-22711032 None:intergenic 45.0%
GCGTTGTTAAGAATGGTTGG+TGG - chr6_1:22711233-22711252 Msa0879850:three_prime_UTR 45.0%
! ATCAAGCGCTGCAAAAACGT+TGG + chr6_1:22711300-22711319 None:intergenic 45.0%
ACCGTTGAATGCAACCTCAT+GGG - chr6_1:22711424-22711443 Msa0879850:CDS 45.0%
! TGTTACATGGGTGCGCATTT+TGG - chr6_1:22712193-22712212 Msa0879850:CDS 45.0%
TTTAGATGAAGGTGACGAGG+AGG - chr6_1:22712438-22712457 Msa0879850:intron 45.0%
TTCTTCTTGACCTCAGGTTC+AGG + chr6_1:22712511-22712530 None:intergenic 45.0%
TCAGCATTCTTCTTGACCTC+AGG + chr6_1:22712517-22712536 None:intergenic 45.0%
CGAACGTCAACTCTCCAAAA+AGG - chr6_1:22712561-22712580 Msa0879850:intron 45.0%
GAAGGAACTTGAAGAGCTTG+AGG - chr6_1:22712594-22712613 Msa0879850:intron 45.0%
GTGCATGTCAATCTAGATGC+AGG - chr6_1:22712942-22712961 Msa0879850:intron 45.0%
GAAGGATAAAGCTTCCAAGG+AGG - chr6_1:22713112-22713131 Msa0879850:CDS 45.0%
GTTAGACTCTTTCACCTCCT+TGG + chr6_1:22713129-22713148 None:intergenic 45.0%
AGCAGCGTCCATTTCTTTAC+TGG + chr6_1:22713255-22713274 None:intergenic 45.0%
! GCACAGGTTGTTGGTTGTAA+TGG + chr6_1:22713349-22713368 None:intergenic 45.0%
! TCTTTTACCGCACAGGTTGT+TGG + chr6_1:22713358-22713377 None:intergenic 45.0%
!!! CTGGGGTTGTTTTGGCTTTA+TGG - chr6_1:22713605-22713624 Msa0879850:five_prime_UTR 45.0%
!!! GGGTTGTTTTGGCTTTATGG+CGG - chr6_1:22713608-22713627 Msa0879850:five_prime_UTR 45.0%
GTTCTCTTCCCAGCTAGCTA+GGG + chr6_1:22710894-22710913 None:intergenic 50.0%
TGTTCTCTTCCCAGCTAGCT+AGG + chr6_1:22710895-22710914 None:intergenic 50.0%
AGGCGGAGAATGGGATATAG+AGG + chr6_1:22710942-22710961 None:intergenic 50.0%
AAGAGTGAGAGGCGGAGAAT+GGG + chr6_1:22710951-22710970 None:intergenic 50.0%
AAAGAGTGAGAGGCGGAGAA+TGG + chr6_1:22710952-22710971 None:intergenic 50.0%
TGGGGGGGAAATCGAGATTA+GGG + chr6_1:22710993-22711012 None:intergenic 50.0%
TTGGGGGGGAAATCGAGATT+AGG + chr6_1:22710994-22711013 None:intergenic 50.0%
! ATTGAGATCTGGGATTGGGG+GGG + chr6_1:22711008-22711027 None:intergenic 50.0%
! GATTGAGATCTGGGATTGGG+GGG + chr6_1:22711009-22711028 None:intergenic 50.0%
TGGTGGAAGCAGAAGAGATG+AGG - chr6_1:22711253-22711272 Msa0879850:exon 50.0%
GGTGGAAGCAGAAGAGATGA+GGG - chr6_1:22711254-22711273 Msa0879850:exon 50.0%
CAGAAGAGATGAGGGTTCGT+TGG - chr6_1:22711262-22711281 Msa0879850:CDS 50.0%
CGCTGCAAAAACGTTGGTGT+TGG + chr6_1:22711294-22711313 None:intergenic 50.0%
CTGCGATTCCGATTCCGATT+TGG + chr6_1:22711387-22711406 None:intergenic 50.0%
CAAATCGGAATCGGAATCGC+AGG - chr6_1:22711385-22711404 Msa0879850:CDS 50.0%
! AATCGGAATCGCAGGCGTTT+TGG - chr6_1:22711393-22711412 Msa0879850:CDS 50.0%
! ATCGGAATCGCAGGCGTTTT+GGG - chr6_1:22711394-22711413 Msa0879850:CDS 50.0%
CACCGTTGAATGCAACCTCA+TGG - chr6_1:22711423-22711442 Msa0879850:CDS 50.0%
GCCCATGAGGTTGCATTCAA+CGG + chr6_1:22711428-22711447 None:intergenic 50.0%
TGAGGGTCGGAAAATTGAGG+CGG + chr6_1:22711494-22711513 None:intergenic 50.0%
GGTTGAGGGTCGGAAAATTG+AGG + chr6_1:22711497-22711516 None:intergenic 50.0%
! GTTTGTCCTCACTGGGTTGA+GGG + chr6_1:22711511-22711530 None:intergenic 50.0%
! GGACAAACCCGAGCATTTTG+AGG - chr6_1:22711523-22711542 Msa0879850:CDS 50.0%
TCAGGTTTCACAGTGTGCTC+TGG + chr6_1:22712493-22712512 None:intergenic 50.0%
CACTGTGAAACCTGAACCTG+AGG - chr6_1:22712498-22712517 Msa0879850:intron 50.0%
TGAAGTTCCAGCTGCACCAA+AGG - chr6_1:22712534-22712553 Msa0879850:intron 50.0%
CAAGGCCAAGATGAATCCCA+AGG - chr6_1:22712664-22712683 Msa0879850:intron 50.0%
TGTATTTGCAGGTGCACCTC+AGG - chr6_1:22713007-22713026 Msa0879850:intron 50.0%
GGTGCACCTCAGGATAAGAA+AGG - chr6_1:22713017-22713036 Msa0879850:intron 50.0%
GGTGTAGATGGGGATGTAGA+TGG - chr6_1:22713038-22713057 Msa0879850:intron 50.0%
! GCAAGGTTCTTTTACCGCAC+AGG + chr6_1:22713365-22713384 None:intergenic 50.0%
GAGGTTGCATTCAACGGTGC+CGG + chr6_1:22711422-22711441 None:intergenic 55.0%
! TGCAACCTCATGGGCTGATG+TGG - chr6_1:22711433-22711452 Msa0879850:CDS 55.0%
GTCATCCACATCAGCCCATG+AGG + chr6_1:22711441-22711460 None:intergenic 55.0%
GTCGGAAAATTGAGGCGGTG+CGG + chr6_1:22711489-22711508 None:intergenic 55.0%
GGTTTGTCCTCACTGGGTTG+AGG + chr6_1:22711512-22711531 None:intergenic 55.0%
TGCTCGGGTTTGTCCTCACT+GGG + chr6_1:22711518-22711537 None:intergenic 55.0%
ATGCTCGGGTTTGTCCTCAC+TGG + chr6_1:22711519-22711538 None:intergenic 55.0%
TGAAGGTGACGAGGAGGTAG+AGG - chr6_1:22712444-22712463 Msa0879850:intron 55.0%
AGTTCCAGCTGCACCAAAGG+AGG - chr6_1:22712537-22712556 Msa0879850:intron 55.0%
AGTTGACGTTCGGCCTCCTT+TGG + chr6_1:22712553-22712572 None:intergenic 55.0%
TGCTAGAGCTGCTGCTCAAG+AGG - chr6_1:22713274-22713293 Msa0879850:CDS 55.0%
GGTGCGAGAGAGAGAGAGAG+AGG + chr6_1:22710921-22710940 None:intergenic 60.0%
!! ATCGCAGGCGTTTTGGGCTC+CGG - chr6_1:22711400-22711419 Msa0879850:CDS 60.0%
GGAAAATTGAGGCGGTGCGG+TGG + chr6_1:22711486-22711505 None:intergenic 60.0%
TTCCGACCCTCAACCCAGTG+AGG - chr6_1:22711502-22711521 Msa0879850:CDS 60.0%
! GTCCTCACTGGGTTGAGGGT+CGG + chr6_1:22711507-22711526 None:intergenic 60.0%
CTGCTCAAGAGGCTGCTGCA+AGG - chr6_1:22713285-22713304 Msa0879850:CDS 60.0%
AGGCTGCTGCAAGGAACGCA+AGG - chr6_1:22713294-22713313 Msa0879850:CDS 60.0%
! TCGGCCTCCTTTGGTGCAGC+TGG + chr6_1:22712544-22712563 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 22710880 22713752 22710880 ID=Msa0879850;Name=Msa0879850
chr6_1 mRNA 22710880 22713752 22710880 ID=Msa0879850-mRNA-1;Parent=Msa0879850;Name=Msa0879850-mRNA-1;_AED=0.26;_eAED=0.26;_QI=365|1|1|1|1|1|3|379|308
chr6_1 exon 22710880 22711614 22710880 ID=Msa0879850-mRNA-1:exon:6265;Parent=Msa0879850-mRNA-1
chr6_1 exon 22711947 22712217 22711947 ID=Msa0879850-mRNA-1:exon:6264;Parent=Msa0879850-mRNA-1
chr6_1 exon 22713088 22713752 22713088 ID=Msa0879850-mRNA-1:exon:6263;Parent=Msa0879850-mRNA-1
chr6_1 five_prime_UTR 22713388 22713752 22713388 ID=Msa0879850-mRNA-1:five_prime_utr;Parent=Msa0879850-mRNA-1
chr6_1 CDS 22713088 22713387 22713088 ID=Msa0879850-mRNA-1:cds;Parent=Msa0879850-mRNA-1
chr6_1 CDS 22711947 22712217 22711947 ID=Msa0879850-mRNA-1:cds;Parent=Msa0879850-mRNA-1
chr6_1 CDS 22711259 22711614 22711259 ID=Msa0879850-mRNA-1:cds;Parent=Msa0879850-mRNA-1
chr6_1 three_prime_UTR 22710880 22711258 22710880 ID=Msa0879850-mRNA-1:three_prime_utr;Parent=Msa0879850-mRNA-1
Gene Sequence

>Msa0879850

ATGGTTGGTGGTGGAAGCAGAAGAGATGAGGGTTCGTTGGTAATTTCCAACACCAACGTTTTTGCAGCGCTTGATACTTTGAAGAAGAAGAAGAAATCGGACAAGGACAAGAAGAATAATAAGGGTTCTTCCAAATCAACCAAATCGGAATCGGAATCGCAGGCGTTTTGGGCTCCGGCACCGTTGAATGCAACCTCATGGGCTGATGTGGATGACGACGATGATGATTATTATCTGACCACCGCACCGCCTCAATTTTCCGACCCTCAACCCAGTGAGGACAAACCCGAGCATTTTGAGGAATCTGAGAGTGAAGAAGATATTTTAGATGAAGGTGACGAGGAGGTAGAGGAAGAGCAAGATCATGAATCAGAACCAGAGCACACTGTGAAACCTGAACCTGAGGTCAAGAAGAATGCTGAAGTTCCAGCTGCACCAAAGGAGGCCGAACGTCAACTCTCCAAAAAGGAAAGGAAGAAGAAGGAACTTGAAGAGCTTGAGGCTCTTTTAGCTGATTTTGGAGTCACACAGAATGAAAGCAATGATGGTCAAGGCCAAGATGAATCCCAAGGTGCACCTCAGGATAAGAAAGGTGTAGATGGGGATGTAGATGGCGAAAAGAAAGAAATCACTGCTGAGTCCAAGAATGCCAAGAAAAAGAAAAAGAAGGATAAAGCTTCCAAGGAGGTGAAAGAGTCTAACGGTCAGCCCAACACTTCTGATGTTGAAAATGCAGAGGAGGATTCATCTGTTGTTGATGTGAAAGAGCGTCTTAAGAAAGTTGCTTCTATGAGGAAGAAAAAATCCAGTAAAGAAATGGACGCTGCTGCTAGAGCTGCTGCTCAAGAGGCTGCTGCAAGGAACGCAAGGCTTGCTGCCGCTAAGAAGAAAGAGAAGAACCATTACAACCAACAACCTGTGCGGTAA

Protein sequence

>Msa0879850

MVGGGSRRDEGSLVISNTNVFAALDTLKKKKKSDKDKKNNKGSSKSTKSESESQAFWAPAPLNATSWADVDDDDDDYYLTTAPPQFSDPQPSEDKPEHFEESESEEDILDEGDEEVEEEQDHESEPEHTVKPEPEVKKNAEVPAAPKEAERQLSKKERKKKELEELEALLADFGVTQNESNDGQGQDESQGAPQDKKGVDGDVDGEKKEITAESKNAKKKKKKDKASKEVKESNGQPNTSDVENAEEDSSVVDVKERLKKVASMRKKKSSKEMDAAARAAAQEAAARNARLAAAKKKEKNHYNQQPVR*