AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0524590


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0524590 MtrunA17_Chr3g0138531 98.377 308 4 1 1 308 1 307 0.0 595
Msa0524590 MtrunA17_Chr3g0138541 87.107 318 29 3 1 308 1 316 2.57e-99 295
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0524590 AT2G25670.2 60.615 325 104 9 1 308 1 318 1.15e-43 152
Msa0524590 AT2G25670.1 60.615 325 104 9 1 308 1 318 1.15e-43 152
Msa0524590 AT4G32610.1 55.385 325 118 11 1 308 1 315 1.81e-33 125

Find 103 sgRNAs with CRISPR-Local

Find 177 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCTTCTTCTTGGCATTCT+TGG 0.196635 3_4:+78048129 None:intergenic
AATCGGAATCGCAGGCGTTT+TGG 0.237603 3_4:-78049844 Msa0524590:CDS
CGATTCCGATTTGGTTGATT+TGG 0.262411 3_4:+78049862 None:intergenic
TTCTTCTTGACCTCAGGTTC+AGG 0.291395 3_4:+78048708 None:intergenic
CAAGGACAAGAAGAATAATA+AGG 0.295710 3_4:-78049891 Msa0524590:CDS
GAGATTGAGATCTGGGATTG+GGG 0.318478 3_4:+78050229 None:intergenic
TATGGCGGATTAATTAGTTT+TGG 0.335384 3_4:-78047594 Msa0524590:three_prime_UTR
AGCAGCGTCCATTTCTTTAC+TGG 0.341268 3_4:+78047964 None:intergenic
GGAGATTGAGATCTGGGATT+GGG 0.342740 3_4:+78050228 None:intergenic
GCTAAAGCCAACTGTTTATT+CGG 0.361954 3_4:+78047781 None:intergenic
AAACAGTTGGCTTTAGCTCT+TGG 0.363128 3_4:-78047775 Msa0524590:three_prime_UTR
CTGCGATTCCGATTCCGATT+TGG 0.363251 3_4:+78049853 None:intergenic
AAGAGTGAGAGGCGGAGAAT+GGG 0.365234 3_4:+78050289 None:intergenic
GTGCTGTGTTGCTACTTATA+TGG 0.365344 3_4:-78047543 Msa0524590:three_prime_UTR
TTTGTGTACTGGGGTTGTTT+TGG 0.368329 3_4:-78047620 Msa0524590:three_prime_UTR
CAGGATAAGAAAGGTGTAGA+TGG 0.373922 3_4:-78048190 Msa0524590:CDS
AAAGAGTGAGAGGCGGAGAA+TGG 0.386166 3_4:+78050288 None:intergenic
TCGGCCTCCTTTGGTGCAGC+TGG 0.386362 3_4:+78048675 None:intergenic
AGTTGACGTTCGGCCTCCTT+TGG 0.387948 3_4:+78048666 None:intergenic
CGAACGTCAACTCTCCAAAA+AGG 0.392328 3_4:-78048655 Msa0524590:CDS
ATGCTCGGGTTTGTCCTCAC+TGG 0.394418 3_4:+78049721 None:intergenic
GGTTTGTCCTCACTGGGTTG+AGG 0.405114 3_4:+78049728 None:intergenic
TTATATAAATAAATAAATAA+AGG 0.412888 3_4:+78050207 None:intergenic
TGAAGGTGACGAGGAGGTAG+AGG 0.413213 3_4:-78048772 Msa0524590:CDS
AATAAAGGAGATTGAGATCT+GGG 0.416008 3_4:+78050222 None:intergenic
GTTTGTCCTCACTGGGTTGA+GGG 0.417417 3_4:+78049729 None:intergenic
TGTTCTCTTCCCAGCTAGCT+AGG 0.423496 3_4:+78050345 None:intergenic
TGCTAGAGCTGCTGCTCAAG+AGG 0.430832 3_4:-78047942 Msa0524590:CDS
GTGATATAACCCTAGCTAGC+TGG 0.431730 3_4:-78050355 Msa0524590:five_prime_UTR
TCAGCATTCTTCTTGACCTC+AGG 0.431890 3_4:+78048702 None:intergenic
TCAGGTTTCACAGTGTGCTC+TGG 0.433555 3_4:+78048726 None:intergenic
AAATACCTTGGGATTCATCT+TGG 0.436144 3_4:+78048547 None:intergenic
GCTCTCCTTTACATCAATAC+AGG 0.436244 3_4:-78047833 Msa0524590:three_prime_UTR
GCACAGGTTGTTGGTTGTAA+TGG 0.445016 3_4:+78047870 None:intergenic
AGATTGAGATCTGGGATTGG+GGG 0.451081 3_4:+78050230 None:intergenic
ATTGAGATCTGGGATTGGGG+GGG 0.457421 3_4:+78050232 None:intergenic
AAATAAAGGAGATTGAGATC+TGG 0.459992 3_4:+78050221 None:intergenic
TGCTCGGGTTTGTCCTCACT+GGG 0.461528 3_4:+78049722 None:intergenic
CAAATCAACCAAATCGGAAT+CGG 0.464697 3_4:-78049861 Msa0524590:CDS
TGTATTTGCAGGTGCACCTC+AGG 0.467621 3_4:-78048209 Msa0524590:intron
GTTAGACTCTTTCACCTCCT+TGG 0.471040 3_4:+78048090 None:intergenic
TTGAATCGCGTTGTTAAGAA+TGG 0.471740 3_4:-78050011 Msa0524590:exon
TTCTTCCAAATCAACCAAAT+CGG 0.473799 3_4:-78049867 Msa0524590:CDS
GGTGTAGATGGGGATGTAGA+TGG 0.477288 3_4:-78048178 Msa0524590:CDS
AGGAGATTGAGATCTGGGAT+TGG 0.478847 3_4:+78050227 None:intergenic
GATTGAGATCTGGGATTGGG+GGG 0.487047 3_4:+78050231 None:intergenic
GTTCTTCTCTTTCTTCTTAG+CGG 0.490710 3_4:+78047892 None:intergenic
AGACAATATCTCAAGTCCAT+TGG 0.492455 3_4:+78047732 None:intergenic
TTAAGAAAGTTGCTTCTATG+AGG 0.492845 3_4:-78047997 Msa0524590:CDS
AAATTCCTGTATTGATGTAA+AGG 0.499279 3_4:+78047828 None:intergenic
AAGGACAAGAAGAATAATAA+GGG 0.503226 3_4:-78049890 Msa0524590:CDS
GTTCTCTTCCCAGCTAGCTA+GGG 0.507395 3_4:+78050346 None:intergenic
CACCGTTGAATGCAACCTCA+TGG 0.509050 3_4:-78049814 Msa0524590:CDS
GGGAAATCGAGATTAGGGTT+TGG 0.509305 3_4:+78050252 None:intergenic
CTGCTCAAGAGGCTGCTGCA+AGG 0.511826 3_4:-78047931 Msa0524590:CDS
TGATATAACCCTAGCTAGCT+GGG 0.512292 3_4:-78050354 Msa0524590:five_prime_UTR
AGGCGGAGAATGGGATATAG+AGG 0.521569 3_4:+78050298 None:intergenic
TGAACAAACCTCAAAATGCT+CGG 0.523575 3_4:+78049706 None:intergenic
GAGGTTGCATTCAACGGTGC+CGG 0.524888 3_4:+78049818 None:intergenic
TGGTGGAAGCAGAAGAGATG+AGG 0.527011 3_4:-78049984 Msa0524590:CDS
AAAGAAGGATAAAGCTTCCA+AGG 0.528000 3_4:-78048107 Msa0524590:CDS
GTCCTCACTGGGTTGAGGGT+CGG 0.528008 3_4:+78049733 None:intergenic
AGGATAAGAAAGGTGTAGAT+GGG 0.528793 3_4:-78048189 Msa0524590:CDS
CAAATCGGAATCGGAATCGC+AGG 0.529120 3_4:-78049852 Msa0524590:CDS
GCCCATGAGGTTGCATTCAA+CGG 0.535338 3_4:+78049812 None:intergenic
TATTACTAGTCGTATTCCAA+TGG 0.542649 3_4:-78047748 Msa0524590:three_prime_UTR
GAACAAACCTCAAAATGCTC+GGG 0.543027 3_4:+78049707 None:intergenic
AGGCTGCTGCAAGGAACGCA+AGG 0.544412 3_4:-78047922 Msa0524590:CDS
TGCAACCTCATGGGCTGATG+TGG 0.545900 3_4:-78049804 Msa0524590:CDS
ACACAGAATGAAAGCAATGA+TGG 0.546801 3_4:-78048576 Msa0524590:CDS
GAAGGAACTTGAAGAGCTTG+AGG 0.550464 3_4:-78048622 Msa0524590:CDS
ACCGTTGAATGCAACCTCAT+GGG 0.552821 3_4:-78049813 Msa0524590:CDS
CAGAAGAGATGAGGGTTCGT+TGG 0.554071 3_4:-78049975 Msa0524590:CDS
GGAAAATTGAGGCGGTGCGG+TGG 0.568741 3_4:+78049754 None:intergenic
TTGTTAAGAATGGTTGGTGG+TGG 0.570771 3_4:-78050001 Msa0524590:exon
TCTACACCTTTCTTATCCTG+AGG 0.571217 3_4:+78048193 None:intergenic
TGAAGTTCCAGCTGCACCAA+AGG 0.576041 3_4:-78048682 Msa0524590:CDS
GGTTGAGGGTCGGAAAATTG+AGG 0.576339 3_4:+78049743 None:intergenic
AAATGTAAGAAAAGAGTGAG+AGG 0.580119 3_4:+78050278 None:intergenic
TGTAAGAAAAGAGTGAGAGG+CGG 0.582582 3_4:+78050281 None:intergenic
TGATGTTGAAAATGCAGAGG+AGG 0.584727 3_4:-78048050 Msa0524590:CDS
ATCGCGTTGTTAAGAATGGT+TGG 0.586496 3_4:-78050007 Msa0524590:exon
CACTGTGAAACCTGAACCTG+AGG 0.592278 3_4:-78048718 Msa0524590:CDS
GGTGCACCTCAGGATAAGAA+AGG 0.599338 3_4:-78048199 Msa0524590:CDS
AGTTCCAGCTGCACCAAAGG+AGG 0.599579 3_4:-78048679 Msa0524590:CDS
GATGATGCCGAATAAACAGT+TGG 0.602592 3_4:-78047788 Msa0524590:three_prime_UTR
GGATAAGAAAGGTGTAGATG+GGG 0.604616 3_4:-78048188 Msa0524590:CDS
TATTGATGTAAAGGAGAGCA+AGG 0.606781 3_4:+78047837 None:intergenic
AATGAAAGCAATGATGGTCA+AGG 0.616215 3_4:-78048570 Msa0524590:CDS
GGTGGAAGCAGAAGAGATGA+GGG 0.627510 3_4:-78049983 Msa0524590:CDS
TTTAGATGAAGGTGACGAGG+AGG 0.634428 3_4:-78048778 Msa0524590:CDS
GTCGGAAAATTGAGGCGGTG+CGG 0.637381 3_4:+78049751 None:intergenic
TTCTGATGTTGAAAATGCAG+AGG 0.645244 3_4:-78048053 Msa0524590:CDS
GTCATCCACATCAGCCCATG+AGG 0.661130 3_4:+78049799 None:intergenic
GAAGAAGAAGAAATCGGACA+AGG 0.668190 3_4:-78049909 Msa0524590:CDS
TTCCGACCCTCAACCCAGTG+AGG 0.672447 3_4:-78049735 Msa0524590:CDS
CAAGGCCAAGATGAATCCCA+AGG 0.675177 3_4:-78048552 Msa0524590:intron
GCGTTGTTAAGAATGGTTGG+TGG 0.676274 3_4:-78050004 Msa0524590:exon
TCGGCATCATCATATGAACA+AGG 0.678182 3_4:+78047800 None:intergenic
AAGGAGGTGAAAGAGTCTAA+CGG 0.681195 3_4:-78048088 Msa0524590:CDS
ATTACAACCAACAACCTGTG+CGG 0.714310 3_4:-78047868 Msa0524590:CDS
TGAGGGTCGGAAAATTGAGG+CGG 0.719908 3_4:+78049746 None:intergenic
GAAGGATAAAGCTTCCAAGG+AGG 0.726948 3_4:-78048104 Msa0524590:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATATAAATAAATAAATAA+AGG + chr3_4:78047640-78047659 None:intergenic 0.0%
!! AAAAACAGTTAAAAATAAAT+TGG + chr3_4:78050353-78050372 None:intergenic 10.0%
!!! AATTTATTTTTAACTGTTTT+TGG - chr3_4:78050352-78050371 Msa0524590:five_prime_UTR 10.0%
!! AAATTGAAAAGTAAAAAATC+TGG + chr3_4:78049016-78049035 None:intergenic 15.0%
!!! TTTACTTTTCAATTTTTAAC+AGG - chr3_4:78049021-78049040 Msa0524590:intron 15.0%
!! ATGAAAAAAATTATAAATGC+TGG + chr3_4:78049536-78049555 None:intergenic 15.0%
!!! TAAGTATTTGAAAAGCTTTT+CGG + chr3_4:78048633-78048652 None:intergenic 20.0%
!!! ACATTTTGAAGATTTATCTT+AGG + chr3_4:78048670-78048689 None:intergenic 20.0%
!! AGTTTATCATTACTATTCAA+AGG + chr3_4:78048882-78048901 None:intergenic 20.0%
!! TGAATAGTAATGATAAACTT+TGG - chr3_4:78048883-78048902 Msa0524590:intron 20.0%
!! TTACATTATTTGTAGGATTA+TGG - chr3_4:78049338-78049357 Msa0524590:intron 20.0%
!!! GATATTGTCTTAAAACTTTT+TGG - chr3_4:78050125-78050144 Msa0524590:five_prime_UTR 20.0%
! TTTGAAGAAGAAGAAGAAAT+CGG - chr3_4:78047929-78047948 Msa0524590:CDS 25.0%
! AAGGACAAGAAGAATAATAA+GGG - chr3_4:78047954-78047973 Msa0524590:CDS 25.0%
!!! ATGTCATTTTTCTGTTTGTT+TGG - chr3_4:78048264-78048283 Msa0524590:intron 25.0%
!! TTGATGACTATTGAGATTAA+GGG - chr3_4:78048359-78048378 Msa0524590:intron 25.0%
!! ATGAACACAAGTTGAAAATA+AGG - chr3_4:78048585-78048604 Msa0524590:CDS 25.0%
!! ACAAGTTGAAAATAAGGTAT+AGG - chr3_4:78048591-78048610 Msa0524590:CDS 25.0%
! TATCTTAGGATAAAACATGT+TGG + chr3_4:78048656-78048675 None:intergenic 25.0%
! ACACAATTATCAAAAAGATC+AGG + chr3_4:78048756-78048775 None:intergenic 25.0%
!! TTGATAATTGTGTTTCTTTG+AGG - chr3_4:78048763-78048782 Msa0524590:CDS 25.0%
! TGTCTATGCGATAAATAAAT+AGG - chr3_4:78048795-78048814 Msa0524590:CDS 25.0%
!!! AATAAATAGGTTTTGTCACA+TGG - chr3_4:78048808-78048827 Msa0524590:intron 25.0%
!!! ATAAATAGGTTTTGTCACAT+GGG - chr3_4:78048809-78048828 Msa0524590:intron 25.0%
!!! GAAGAAGATATTTTAGATGA+AGG - chr3_4:78049055-78049074 Msa0524590:intron 25.0%
!!! TATGGTTTATTTTTGAGTTC+AGG - chr3_4:78049356-78049375 Msa0524590:intron 25.0%
! GAAAAAATCCAGTAAAGAAA+TGG - chr3_4:78049872-78049891 Msa0524590:CDS 25.0%
!! AAATTCCTGTATTGATGTAA+AGG + chr3_4:78050019-78050038 None:intergenic 25.0%
AAATGTAAGAAAAGAGTGAG+AGG + chr3_4:78047569-78047588 None:intergenic 30.0%
AATAAAGGAGATTGAGATCT+GGG + chr3_4:78047625-78047644 None:intergenic 30.0%
AAATAAAGGAGATTGAGATC+TGG + chr3_4:78047626-78047645 None:intergenic 30.0%
CAAGGACAAGAAGAATAATA+AGG - chr3_4:78047953-78047972 Msa0524590:CDS 30.0%
TTCTTCCAAATCAACCAAAT+CGG - chr3_4:78047977-78047996 Msa0524590:CDS 30.0%
!! TGTTGTTGTTTATTGATTCC+TGG - chr3_4:78048189-78048208 Msa0524590:CDS 30.0%
GCAATAACAAAAAAACATCC+AGG + chr3_4:78048210-78048229 None:intergenic 30.0%
!! GTTGATGACTATTGAGATTA+AGG - chr3_4:78048358-78048377 Msa0524590:intron 30.0%
TTTATGTGCTTACTTTGCTT+TGG - chr3_4:78048707-78048726 Msa0524590:CDS 30.0%
! TTATCTGTGTTTTCTTTGTG+TGG - chr3_4:78048954-78048973 Msa0524590:intron 30.0%
CTCTGGATAATAAATACCTT+GGG + chr3_4:78049311-78049330 None:intergenic 30.0%
CTGCATCTTACATTATTTGT+AGG - chr3_4:78049331-78049350 Msa0524590:intron 30.0%
TCAGCGAAAAAAGATGAAAA+TGG + chr3_4:78049475-78049494 None:intergenic 30.0%
ATTCGCAAAATTGTATTTGC+AGG - chr3_4:78049624-78049643 Msa0524590:intron 30.0%
! ATCCTTCTTTTTCTTCTTCT+TGG + chr3_4:78049727-78049746 None:intergenic 30.0%
!!! TTTTCAACATCAGAAGTGTT+GGG + chr3_4:78049786-78049805 None:intergenic 30.0%
!! ATTTTCAACATCAGAAGTGT+TGG + chr3_4:78049787-78049806 None:intergenic 30.0%
TTAAGAAAGTTGCTTCTATG+AGG - chr3_4:78049847-78049866 Msa0524590:CDS 30.0%
TATTACTAGTCGTATTCCAA+TGG - chr3_4:78050096-78050115 Msa0524590:five_prime_UTR 30.0%
!!! ATGAACTACTTTTTGTGTAC+TGG - chr3_4:78050213-78050232 Msa0524590:five_prime_UTR 30.0%
!!! TGAACTACTTTTTGTGTACT+GGG - chr3_4:78050214-78050233 Msa0524590:five_prime_UTR 30.0%
!!! TATGGCGGATTAATTAGTTT+TGG - chr3_4:78050250-78050269 Msa0524590:five_prime_UTR 30.0%
TTGAATCGCGTTGTTAAGAA+TGG - chr3_4:78047833-78047852 Msa0524590:three_prime_UTR 35.0%
CAAATCAACCAAATCGGAAT+CGG - chr3_4:78047983-78048002 Msa0524590:CDS 35.0%
TGAACAAACCTCAAAATGCT+CGG + chr3_4:78048141-78048160 None:intergenic 35.0%
TCACTTTATGTGCTTAGCTA+AGG - chr3_4:78048238-78048257 Msa0524590:intron 35.0%
TGGTTATGCCTGTTCTTATT+AGG - chr3_4:78048727-78048746 Msa0524590:CDS 35.0%
TCAGGTATCCTAATAAGAAC+AGG + chr3_4:78048738-78048757 None:intergenic 35.0%
TTGTGTGGTTATTGCTTGAA+TGG - chr3_4:78048969-78048988 Msa0524590:intron 35.0%
!! TATTTTAGATGAAGGTGACG+AGG - chr3_4:78049063-78049082 Msa0524590:intron 35.0%
! CTTCTTCTTCCTTTCCTTTT+TGG + chr3_4:78049206-78049225 None:intergenic 35.0%
CAAAAAGGAAAGGAAGAAGA+AGG - chr3_4:78049204-78049223 Msa0524590:intron 35.0%
ACACAGAATGAAAGCAATGA+TGG - chr3_4:78049268-78049287 Msa0524590:intron 35.0%
AATGAAAGCAATGATGGTCA+AGG - chr3_4:78049274-78049293 Msa0524590:intron 35.0%
AAATACCTTGGGATTCATCT+TGG + chr3_4:78049300-78049319 None:intergenic 35.0%
! GCTCTGGATAATAAATACCT+TGG + chr3_4:78049312-78049331 None:intergenic 35.0%
AATAATGTAAGATGCAGCTC+TGG + chr3_4:78049328-78049347 None:intergenic 35.0%
!!! TTTCATCTTTTTTCGCTGAC+AGG - chr3_4:78049476-78049495 Msa0524590:intron 35.0%
! AGGATAAGAAAGGTGTAGAT+GGG - chr3_4:78049655-78049674 Msa0524590:intron 35.0%
TTTCTTCTTCTTGGCATTCT+TGG + chr3_4:78049718-78049737 None:intergenic 35.0%
TGCCAAGAAGAAGAAAAAGA+AGG - chr3_4:78049722-78049741 Msa0524590:CDS 35.0%
AAAGAAGGATAAAGCTTCCA+AGG - chr3_4:78049737-78049756 Msa0524590:CDS 35.0%
TTCTGATGTTGAAAATGCAG+AGG - chr3_4:78049791-78049810 Msa0524590:CDS 35.0%
GTTCTTCTCTTTCTTCTTAG+CGG + chr3_4:78049955-78049974 None:intergenic 35.0%
TATTGATGTAAAGGAGAGCA+AGG + chr3_4:78050010-78050029 None:intergenic 35.0%
GCTAAAGCCAACTGTTTATT+CGG + chr3_4:78050066-78050085 None:intergenic 35.0%
AGACAATATCTCAAGTCCAT+TGG + chr3_4:78050115-78050134 None:intergenic 35.0%
!!! GAACTACTTTTTGTGTACTG+GGG - chr3_4:78050215-78050234 Msa0524590:five_prime_UTR 35.0%
TGATATAACCCTAGCTAGCT+GGG - chr3_4:78047490-78047509 Msa0524590:three_prime_UTR 40.0%
TGTAAGAAAAGAGTGAGAGG+CGG + chr3_4:78047566-78047585 None:intergenic 40.0%
ATCGCGTTGTTAAGAATGGT+TGG - chr3_4:78047837-78047856 Msa0524590:three_prime_UTR 40.0%
!! TTGTTAAGAATGGTTGGTGG+TGG - chr3_4:78047843-78047862 Msa0524590:three_prime_UTR 40.0%
GAAGAAGAAGAAATCGGACA+AGG - chr3_4:78047935-78047954 Msa0524590:CDS 40.0%
!! CGATTCCGATTTGGTTGATT+TGG + chr3_4:78047985-78048004 None:intergenic 40.0%
GAACAAACCTCAAAATGCTC+GGG + chr3_4:78048140-78048159 None:intergenic 40.0%
AGCACATAAAGTGAGCAACA+GGG + chr3_4:78048232-78048251 None:intergenic 40.0%
AAGCACATAAAGTGAGCAAC+AGG + chr3_4:78048233-78048252 None:intergenic 40.0%
!! CTTTTTGGAGAGTTGACGTT+CGG + chr3_4:78049191-78049210 None:intergenic 40.0%
GTCAACTCTCCAAAAAGGAA+AGG - chr3_4:78049194-78049213 Msa0524590:intron 40.0%
!! GAGGCTCTTTTAGCTGATTT+TGG - chr3_4:78049241-78049260 Msa0524590:intron 40.0%
TAGAACGAATGCATGAGCAA+CGG + chr3_4:78049393-78049412 None:intergenic 40.0%
ATGCATTCGTTCTACACTAC+TGG - chr3_4:78049399-78049418 Msa0524590:intron 40.0%
! CTGGTCTTTCTTTCTCTGTT+TGG - chr3_4:78049418-78049437 Msa0524590:intron 40.0%
CTAGATCTTTGAGCAAAAGC+AGG + chr3_4:78049450-78049469 None:intergenic 40.0%
TCTACACCTTTCTTATCCTG+AGG + chr3_4:78049654-78049673 None:intergenic 40.0%
! CAGGATAAGAAAGGTGTAGA+TGG - chr3_4:78049654-78049673 Msa0524590:intron 40.0%
! GGATAAGAAAGGTGTAGATG+GGG - chr3_4:78049656-78049675 Msa0524590:intron 40.0%
AAGGAGGTGAAAGAGTCTAA+CGG - chr3_4:78049756-78049775 Msa0524590:CDS 40.0%
TGATGTTGAAAATGCAGAGG+AGG - chr3_4:78049794-78049813 Msa0524590:CDS 40.0%
ATTACAACCAACAACCTGTG+CGG - chr3_4:78049976-78049995 Msa0524590:CDS 40.0%
GCTCTCCTTTACATCAATAC+AGG - chr3_4:78050011-78050030 Msa0524590:exon 40.0%
TCGGCATCATCATATGAACA+AGG + chr3_4:78050047-78050066 None:intergenic 40.0%
GATGATGCCGAATAAACAGT+TGG - chr3_4:78050056-78050075 Msa0524590:five_prime_UTR 40.0%
!! AAACAGTTGGCTTTAGCTCT+TGG - chr3_4:78050069-78050088 Msa0524590:five_prime_UTR 40.0%
! TTTGTGTACTGGGGTTGTTT+TGG - chr3_4:78050224-78050243 Msa0524590:five_prime_UTR 40.0%
! GTGCTGTGTTGCTACTTATA+TGG - chr3_4:78050301-78050320 Msa0524590:five_prime_UTR 40.0%
GTGATATAACCCTAGCTAGC+TGG - chr3_4:78047489-78047508 Msa0524590:three_prime_UTR 45.0%
GGGAAATCGAGATTAGGGTT+TGG + chr3_4:78047595-78047614 None:intergenic 45.0%
! AGATTGAGATCTGGGATTGG+GGG + chr3_4:78047617-78047636 None:intergenic 45.0%
! GAGATTGAGATCTGGGATTG+GGG + chr3_4:78047618-78047637 None:intergenic 45.0%
! GGAGATTGAGATCTGGGATT+GGG + chr3_4:78047619-78047638 None:intergenic 45.0%
! AGGAGATTGAGATCTGGGAT+TGG + chr3_4:78047620-78047639 None:intergenic 45.0%
GCGTTGTTAAGAATGGTTGG+TGG - chr3_4:78047840-78047859 Msa0524590:three_prime_UTR 45.0%
! ATCAAGCGCTGCAAAAACGT+TGG + chr3_4:78047907-78047926 None:intergenic 45.0%
ACCGTTGAATGCAACCTCAT+GGG - chr3_4:78048031-78048050 Msa0524590:CDS 45.0%
TTTAGATGAAGGTGACGAGG+AGG - chr3_4:78049066-78049085 Msa0524590:intron 45.0%
TTCTTCTTGACCTCAGGTTC+AGG + chr3_4:78049139-78049158 None:intergenic 45.0%
TCAGCATTCTTCTTGACCTC+AGG + chr3_4:78049145-78049164 None:intergenic 45.0%
CGAACGTCAACTCTCCAAAA+AGG - chr3_4:78049189-78049208 Msa0524590:intron 45.0%
GAAGGAACTTGAAGAGCTTG+AGG - chr3_4:78049222-78049241 Msa0524590:intron 45.0%
GTGCATGTCAATCTAGATGC+AGG - chr3_4:78049570-78049589 Msa0524590:intron 45.0%
GAAGGATAAAGCTTCCAAGG+AGG - chr3_4:78049740-78049759 Msa0524590:CDS 45.0%
GTTAGACTCTTTCACCTCCT+TGG + chr3_4:78049757-78049776 None:intergenic 45.0%
AGCAGCGTCCATTTCTTTAC+TGG + chr3_4:78049883-78049902 None:intergenic 45.0%
! GCACAGGTTGTTGGTTGTAA+TGG + chr3_4:78049977-78049996 None:intergenic 45.0%
! TCTTTTACCGCACAGGTTGT+TGG + chr3_4:78049986-78050005 None:intergenic 45.0%
!!! CTGGGGTTGTTTTGGCTTTA+TGG - chr3_4:78050232-78050251 Msa0524590:five_prime_UTR 45.0%
!!! GGGTTGTTTTGGCTTTATGG+CGG - chr3_4:78050235-78050254 Msa0524590:five_prime_UTR 45.0%
GTTCTCTTCCCAGCTAGCTA+GGG + chr3_4:78047501-78047520 None:intergenic 50.0%
TGTTCTCTTCCCAGCTAGCT+AGG + chr3_4:78047502-78047521 None:intergenic 50.0%
AGGCGGAGAATGGGATATAG+AGG + chr3_4:78047549-78047568 None:intergenic 50.0%
AAGAGTGAGAGGCGGAGAAT+GGG + chr3_4:78047558-78047577 None:intergenic 50.0%
AAAGAGTGAGAGGCGGAGAA+TGG + chr3_4:78047559-78047578 None:intergenic 50.0%
TGGGGGGGAAATCGAGATTA+GGG + chr3_4:78047600-78047619 None:intergenic 50.0%
TTGGGGGGGAAATCGAGATT+AGG + chr3_4:78047601-78047620 None:intergenic 50.0%
! ATTGAGATCTGGGATTGGGG+GGG + chr3_4:78047615-78047634 None:intergenic 50.0%
! GATTGAGATCTGGGATTGGG+GGG + chr3_4:78047616-78047635 None:intergenic 50.0%
TGGTGGAAGCAGAAGAGATG+AGG - chr3_4:78047860-78047879 Msa0524590:exon 50.0%
GGTGGAAGCAGAAGAGATGA+GGG - chr3_4:78047861-78047880 Msa0524590:exon 50.0%
CAGAAGAGATGAGGGTTCGT+TGG - chr3_4:78047869-78047888 Msa0524590:CDS 50.0%
CGCTGCAAAAACGTTGGTGT+TGG + chr3_4:78047901-78047920 None:intergenic 50.0%
CTGCGATTCCGATTCCGATT+TGG + chr3_4:78047994-78048013 None:intergenic 50.0%
CAAATCGGAATCGGAATCGC+AGG - chr3_4:78047992-78048011 Msa0524590:CDS 50.0%
! AATCGGAATCGCAGGCGTTT+TGG - chr3_4:78048000-78048019 Msa0524590:CDS 50.0%
! ATCGGAATCGCAGGCGTTTT+GGG - chr3_4:78048001-78048020 Msa0524590:CDS 50.0%
CACCGTTGAATGCAACCTCA+TGG - chr3_4:78048030-78048049 Msa0524590:CDS 50.0%
GCCCATGAGGTTGCATTCAA+CGG + chr3_4:78048035-78048054 None:intergenic 50.0%
TGAGGGTCGGAAAATTGAGG+CGG + chr3_4:78048101-78048120 None:intergenic 50.0%
GGTTGAGGGTCGGAAAATTG+AGG + chr3_4:78048104-78048123 None:intergenic 50.0%
! GTTTGTCCTCACTGGGTTGA+GGG + chr3_4:78048118-78048137 None:intergenic 50.0%
! GGACAAACCCGAGCATTTTG+AGG - chr3_4:78048130-78048149 Msa0524590:CDS 50.0%
! TGTCACATGGGTGCGCATTT+TGG - chr3_4:78048821-78048840 Msa0524590:intron 50.0%
TCAGGTTTCACAGTGTGCTC+TGG + chr3_4:78049121-78049140 None:intergenic 50.0%
CACTGTGAAACCTGAACCTG+AGG - chr3_4:78049126-78049145 Msa0524590:intron 50.0%
TGAAGTTCCAGCTGCACCAA+AGG - chr3_4:78049162-78049181 Msa0524590:intron 50.0%
CAAGGCCAAGATGAATCCCA+AGG - chr3_4:78049292-78049311 Msa0524590:intron 50.0%
TGTATTTGCAGGTGCACCTC+AGG - chr3_4:78049635-78049654 Msa0524590:intron 50.0%
GGTGCACCTCAGGATAAGAA+AGG - chr3_4:78049645-78049664 Msa0524590:intron 50.0%
GGTGTAGATGGGGATGTAGA+TGG - chr3_4:78049666-78049685 Msa0524590:intron 50.0%
! GCAAGGTTCTTTTACCGCAC+AGG + chr3_4:78049993-78050012 None:intergenic 50.0%
GAGGTTGCATTCAACGGTGC+CGG + chr3_4:78048029-78048048 None:intergenic 55.0%
! TGCAACCTCATGGGCTGATG+TGG - chr3_4:78048040-78048059 Msa0524590:CDS 55.0%
GTCATCCACATCAGCCCATG+AGG + chr3_4:78048048-78048067 None:intergenic 55.0%
GTCGGAAAATTGAGGCGGTG+CGG + chr3_4:78048096-78048115 None:intergenic 55.0%
GGTTTGTCCTCACTGGGTTG+AGG + chr3_4:78048119-78048138 None:intergenic 55.0%
TGCTCGGGTTTGTCCTCACT+GGG + chr3_4:78048125-78048144 None:intergenic 55.0%
ATGCTCGGGTTTGTCCTCAC+TGG + chr3_4:78048126-78048145 None:intergenic 55.0%
TGAAGGTGACGAGGAGGTAG+AGG - chr3_4:78049072-78049091 Msa0524590:intron 55.0%
AGTTCCAGCTGCACCAAAGG+AGG - chr3_4:78049165-78049184 Msa0524590:intron 55.0%
AGTTGACGTTCGGCCTCCTT+TGG + chr3_4:78049181-78049200 None:intergenic 55.0%
TGCTAGAGCTGCTGCTCAAG+AGG - chr3_4:78049902-78049921 Msa0524590:CDS 55.0%
GGTGCGAGAGAGAGAGAGAG+AGG + chr3_4:78047528-78047547 None:intergenic 60.0%
!! ATCGCAGGCGTTTTGGGCTC+CGG - chr3_4:78048007-78048026 Msa0524590:CDS 60.0%
GGAAAATTGAGGCGGTGCGG+TGG + chr3_4:78048093-78048112 None:intergenic 60.0%
TTCCGACCCTCAACCCAGTG+AGG - chr3_4:78048109-78048128 Msa0524590:CDS 60.0%
! GTCCTCACTGGGTTGAGGGT+CGG + chr3_4:78048114-78048133 None:intergenic 60.0%
CTGCTCAAGAGGCTGCTGCA+AGG - chr3_4:78049913-78049932 Msa0524590:CDS 60.0%
AGGCTGCTGCAAGGAACGCA+AGG - chr3_4:78049922-78049941 Msa0524590:CDS 60.0%
! TCGGCCTCCTTTGGTGCAGC+TGG + chr3_4:78049172-78049191 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 78047487 78050379 78047487 ID=Msa0524590;Name=Msa0524590
chr3_4 mRNA 78047487 78050379 78047487 ID=Msa0524590-mRNA-1;Parent=Msa0524590;Name=Msa0524590-mRNA-1;_AED=0.01;_eAED=0.01;_QI=365|1|1|1|1|1|3|378|308
chr3_4 exon 78047487 78048220 78047487 ID=Msa0524590-mRNA-1:exon:23029;Parent=Msa0524590-mRNA-1
chr3_4 exon 78048553 78048823 78048553 ID=Msa0524590-mRNA-1:exon:23028;Parent=Msa0524590-mRNA-1
chr3_4 exon 78049715 78050379 78049715 ID=Msa0524590-mRNA-1:exon:23027;Parent=Msa0524590-mRNA-1
chr3_4 five_prime_UTR 78050015 78050379 78050015 ID=Msa0524590-mRNA-1:five_prime_utr;Parent=Msa0524590-mRNA-1
chr3_4 CDS 78049715 78050014 78049715 ID=Msa0524590-mRNA-1:cds;Parent=Msa0524590-mRNA-1
chr3_4 CDS 78048553 78048823 78048553 ID=Msa0524590-mRNA-1:cds;Parent=Msa0524590-mRNA-1
chr3_4 CDS 78047865 78048220 78047865 ID=Msa0524590-mRNA-1:cds;Parent=Msa0524590-mRNA-1
chr3_4 three_prime_UTR 78047487 78047864 78047487 ID=Msa0524590-mRNA-1:three_prime_utr;Parent=Msa0524590-mRNA-1
Gene Sequence

>Msa0524590

ATGGTTGGTGGTGGAAGCAGAAGAGATGAGGGTTCGTTGGTAATTTCCAACACCAACGTTTTTGCAGCGCTTGATACTTTGAAGAAGAAGAAGAAATCGGACAAGGACAAGAAGAATAATAAGGGTTCTTCCAAATCAACCAAATCGGAATCGGAATCGCAGGCGTTTTGGGCTCCGGCACCGTTGAATGCAACCTCATGGGCTGATGTGGATGACGACGATGATGATTATTATCTGACCACCGCACCGCCTCAATTTTCCGACCCTCAACCCAGTGAGGACAAACCCGAGCATTTTGAGGAATCTGAGAGTGAAGAAGATATTTTAGATGAAGGTGACGAGGAGGTAGAGGAAGAGCAAGATCATGAATCAGAACCAGAGCACACTGTGAAACCTGAACCTGAGGTCAAGAAGAATGCTGAAGTTCCAGCTGCACCAAAGGAGGCCGAACGTCAACTCTCCAAAAAGGAAAGGAAGAAGAAGGAACTTGAAGAGCTTGAGGCTCTTTTAGCTGATTTTGGAGTCACACAGAATGAAAGCAATGATGGTCAAGGCCAAGATGAATCCCAAGGTGCACCTCAGGATAAGAAAGGTGTAGATGGGGATGTAGATGGCGAAAAGAAAGAAATCACTGCTGAGTCCAAGAATGCCAAGAAGAAGAAAAAGAAGGATAAAGCTTCCAAGGAGGTGAAAGAGTCTAACGGTCAGCCCAACACTTCTGATGTTGAAAATGCAGAGGAGGATTCATCTGTTGTTGATGTGAAAGAGCGTCTTAAGAAAGTTGCTTCTATGAGGAAGAAAAAATCCAGTAAAGAAATGGACGCTGCTGCTAGAGCTGCTGCTCAAGAGGCTGCTGCAAGGAACGCAAGGCTTGCTGCCGCTAAGAAGAAAGAGAAGAACCATTACAACCAACAACCTGTGCGGTAA

Protein sequence

>Msa0524590

MVGGGSRRDEGSLVISNTNVFAALDTLKKKKKSDKDKKNNKGSSKSTKSESESQAFWAPAPLNATSWADVDDDDDDYYLTTAPPQFSDPQPSEDKPEHFEESESEEDILDEGDEEVEEEQDHESEPEHTVKPEPEVKKNAEVPAAPKEAERQLSKKERKKKELEELEALLADFGVTQNESNDGQGQDESQGAPQDKKGVDGDVDGEKKEITAESKNAKKKKKKDKASKEVKESNGQPNTSDVENAEEDSSVVDVKERLKKVASMRKKKSSKEMDAAARAAAQEAAARNARLAAAKKKEKNHYNQQPVR*