Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0500660 | XP_003603027.1 | 98.341 | 422 | 7 | 0 | 14 | 435 | 1 | 422 | 0.0 | 857 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0500660 | sp|Q9FX08|P2C12_ARATH | 76.168 | 428 | 100 | 1 | 14 | 441 | 1 | 426 | 0.0 | 698 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0500660 | G7J6C1 | 98.341 | 422 | 7 | 0 | 14 | 435 | 1 | 422 | 0.0 | 857 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0044510 | Msa0500660 | 0.840268 | 9.631249e-58 | -8.615850e-47 |
Msa0131610 | Msa0500660 | 0.802143 | 6.453013e-49 | -8.615850e-47 |
Msa0138090 | Msa0500660 | 0.871596 | 6.059310e-67 | -8.615850e-47 |
Msa0172320 | Msa0500660 | 0.894285 | 2.848305e-75 | -8.615850e-47 |
Msa0173030 | Msa0500660 | 0.817292 | 3.557123e-52 | -8.615850e-47 |
Msa0429980 | Msa0500660 | 0.990868 | 1.010976e-184 | -8.615850e-47 |
Msa0467570 | Msa0500660 | 0.804765 | 1.845880e-49 | -8.615850e-47 |
Msa0336700 | Msa0500660 | 0.813284 | 2.766607e-51 | -8.615850e-47 |
Msa0500640 | Msa0500660 | 0.983535 | 5.215488e-158 | -8.615850e-47 |
Msa0500660 | Msa0526650 | 0.889651 | 2.000767e-73 | -8.615850e-47 |
Msa0500660 | Msa0526760 | 0.880932 | 3.649779e-70 | -8.615850e-47 |
Msa0500660 | Msa0527130 | 0.968919 | 2.291308e-129 | -8.615850e-47 |
Msa0500660 | Msa0897630 | 0.813814 | 2.115123e-51 | -8.615850e-47 |
Msa0500660 | Msa1366370 | 0.832461 | 9.331047e-56 | -8.615850e-47 |
Msa0500660 | Msa1390250 | 0.889274 | 2.805236e-73 | -8.615850e-47 |
Msa0500660 | Msa1422020 | 0.819003 | 1.458903e-52 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0500660 | MtrunA17_Chr3g0133801 | 98.341 | 422 | 7 | 0 | 14 | 435 | 1 | 422 | 0.0 | 857 |
Msa0500660 | MtrunA17_Chr1g0153671 | 84.286 | 420 | 62 | 3 | 14 | 432 | 1 | 417 | 0.0 | 733 |
Msa0500660 | MtrunA17_Chr1g0209451 | 58.824 | 425 | 167 | 5 | 16 | 436 | 6 | 426 | 1.03e-180 | 512 |
Msa0500660 | MtrunA17_Chr7g0271971 | 57.279 | 419 | 176 | 2 | 17 | 435 | 8 | 423 | 1.38e-167 | 478 |
Msa0500660 | MtrunA17_Chr1g0192471 | 55.961 | 411 | 178 | 2 | 23 | 432 | 14 | 422 | 2.44e-159 | 457 |
Msa0500660 | MtrunA17_Chr7g0225501 | 53.630 | 427 | 162 | 16 | 23 | 432 | 32 | 439 | 2.66e-125 | 371 |
Msa0500660 | MtrunA17_Chr2g0326251 | 48.357 | 213 | 94 | 8 | 120 | 326 | 7 | 209 | 1.21e-50 | 171 |
Msa0500660 | MtrunA17_Chr1g0150451 | 30.738 | 244 | 145 | 8 | 79 | 317 | 108 | 332 | 4.26e-25 | 105 |
Msa0500660 | MtrunA17_Chr3g0136711 | 28.514 | 249 | 154 | 8 | 79 | 322 | 65 | 294 | 2.54e-23 | 99.8 |
Msa0500660 | MtrunA17_Chr1g0212961 | 32.766 | 235 | 134 | 11 | 80 | 311 | 127 | 340 | 3.30e-22 | 97.4 |
Msa0500660 | MtrunA17_Chr3g0105351 | 27.273 | 242 | 155 | 8 | 73 | 308 | 88 | 314 | 6.66e-22 | 96.3 |
Msa0500660 | MtrunA17_Chr3g0105371 | 28.279 | 244 | 150 | 9 | 73 | 308 | 112 | 338 | 1.73e-21 | 95.5 |
Msa0500660 | MtrunA17_Chr2g0317021 | 29.362 | 235 | 142 | 9 | 79 | 308 | 117 | 332 | 9.28e-21 | 93.2 |
Msa0500660 | MtrunA17_Chr8g0360351 | 32.766 | 235 | 130 | 12 | 79 | 306 | 66 | 279 | 1.99e-20 | 91.3 |
Msa0500660 | MtrunA17_Chr4g0070871 | 28.626 | 262 | 142 | 8 | 80 | 308 | 254 | 503 | 2.40e-20 | 93.6 |
Msa0500660 | MtrunA17_Chr5g0430481 | 28.689 | 244 | 149 | 10 | 73 | 308 | 148 | 374 | 6.55e-20 | 91.3 |
Msa0500660 | MtrunA17_Chr1g0150781 | 31.206 | 282 | 122 | 12 | 80 | 313 | 291 | 548 | 1.61e-19 | 91.3 |
Msa0500660 | MtrunA17_Chr3g0126511 | 29.520 | 271 | 159 | 9 | 57 | 321 | 108 | 352 | 1.95e-19 | 89.7 |
Msa0500660 | MtrunA17_Chr3g0135961 | 28.772 | 285 | 139 | 10 | 76 | 316 | 283 | 547 | 1.28e-17 | 85.5 |
Msa0500660 | MtrunA17_Chr1g0171571 | 29.675 | 246 | 140 | 7 | 80 | 310 | 419 | 646 | 3.48e-17 | 84.3 |
Msa0500660 | MtrunA17_Chr1g0158781 | 29.960 | 247 | 142 | 8 | 80 | 308 | 146 | 379 | 7.47e-17 | 82.0 |
Msa0500660 | MtrunA17_Chr8g0389921 | 26.792 | 265 | 161 | 9 | 74 | 316 | 193 | 446 | 2.70e-16 | 80.9 |
Msa0500660 | MtrunA17_Chr2g0279151 | 27.897 | 233 | 144 | 9 | 79 | 306 | 65 | 278 | 5.36e-16 | 78.2 |
Msa0500660 | MtrunA17_Chr4g0065141 | 27.985 | 268 | 144 | 11 | 70 | 315 | 117 | 357 | 6.66e-16 | 79.3 |
Msa0500660 | MtrunA17_Chr4g0051661 | 30.213 | 235 | 135 | 10 | 79 | 306 | 183 | 395 | 1.18e-15 | 78.6 |
Msa0500660 | MtrunA17_Chr5g0407161 | 25.000 | 252 | 152 | 8 | 78 | 315 | 123 | 351 | 2.16e-15 | 77.8 |
Msa0500660 | MtrunA17_Chr4g0050381 | 26.923 | 234 | 145 | 9 | 79 | 306 | 61 | 274 | 4.54e-15 | 75.5 |
Msa0500660 | MtrunA17_Chr6g0483411 | 26.176 | 340 | 193 | 13 | 1 | 306 | 1 | 316 | 6.75e-15 | 75.5 |
Msa0500660 | MtrunA17_Chr5g0426141 | 27.660 | 235 | 142 | 9 | 79 | 306 | 66 | 279 | 8.94e-15 | 74.7 |
Msa0500660 | MtrunA17_Chr3g0115851 | 26.496 | 234 | 146 | 8 | 79 | 306 | 66 | 279 | 1.39e-14 | 73.9 |
Msa0500660 | MtrunA17_Chr2g0299981 | 24.928 | 345 | 173 | 13 | 26 | 313 | 225 | 540 | 2.31e-14 | 75.5 |
Msa0500660 | MtrunA17_Chr1g0194191 | 27.341 | 267 | 156 | 12 | 78 | 323 | 117 | 366 | 2.41e-14 | 74.7 |
Msa0500660 | MtrunA17_Chr1g0150071 | 26.667 | 315 | 145 | 14 | 75 | 323 | 48 | 342 | 5.37e-13 | 70.1 |
Msa0500660 | MtrunA17_Chr5g0396731 | 28.700 | 223 | 136 | 7 | 77 | 290 | 105 | 313 | 1.43e-12 | 68.9 |
Msa0500660 | MtrunA17_Chr2g0286951 | 28.283 | 297 | 163 | 15 | 47 | 308 | 60 | 341 | 1.44e-12 | 69.3 |
Msa0500660 | MtrunA17_Chr3g0136811 | 31.944 | 144 | 71 | 5 | 141 | 273 | 158 | 285 | 2.36e-12 | 68.2 |
Msa0500660 | MtrunA17_Chr2g0295401 | 27.007 | 274 | 156 | 12 | 81 | 315 | 94 | 362 | 3.74e-12 | 67.8 |
Msa0500660 | MtrunA17_Chr2g0293811 | 26.394 | 269 | 162 | 10 | 78 | 327 | 99 | 350 | 2.10e-11 | 65.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0500660 | AT1G47380.1 | 76.168 | 428 | 100 | 1 | 14 | 441 | 1 | 426 | 0.0 | 698 |
Msa0500660 | AT1G68410.4 | 56.355 | 417 | 177 | 2 | 23 | 436 | 19 | 433 | 1.10e-173 | 494 |
Msa0500660 | AT1G68410.3 | 56.355 | 417 | 177 | 2 | 23 | 436 | 19 | 433 | 1.10e-173 | 494 |
Msa0500660 | AT1G68410.1 | 56.355 | 417 | 177 | 2 | 23 | 436 | 19 | 433 | 1.10e-173 | 494 |
Msa0500660 | AT1G68410.2 | 56.355 | 417 | 177 | 2 | 23 | 436 | 19 | 433 | 1.10e-173 | 494 |
Msa0500660 | AT1G09160.2 | 56.532 | 421 | 180 | 2 | 15 | 435 | 6 | 423 | 6.98e-165 | 472 |
Msa0500660 | AT1G09160.1 | 56.532 | 421 | 180 | 2 | 15 | 435 | 6 | 423 | 6.98e-165 | 472 |
Msa0500660 | AT4G26080.1 | 30.545 | 275 | 146 | 8 | 72 | 313 | 165 | 427 | 2.25e-23 | 102 |
Msa0500660 | AT5G57050.2 | 31.559 | 263 | 134 | 9 | 80 | 308 | 121 | 371 | 2.64e-23 | 101 |
Msa0500660 | AT5G53140.1 | 29.856 | 278 | 160 | 9 | 57 | 324 | 115 | 367 | 2.83e-23 | 102 |
Msa0500660 | AT5G53140.2 | 29.856 | 278 | 160 | 9 | 57 | 324 | 115 | 367 | 2.83e-23 | 102 |
Msa0500660 | AT1G07160.1 | 33.824 | 204 | 112 | 8 | 78 | 276 | 152 | 337 | 3.20e-23 | 101 |
Msa0500660 | AT2G34740.1 | 29.183 | 257 | 155 | 8 | 57 | 309 | 102 | 335 | 3.69e-23 | 100 |
Msa0500660 | AT5G57050.1 | 31.559 | 263 | 134 | 9 | 80 | 308 | 161 | 411 | 3.97e-23 | 101 |
Msa0500660 | AT4G31750.2 | 27.778 | 252 | 158 | 8 | 79 | 325 | 64 | 296 | 9.92e-23 | 98.6 |
Msa0500660 | AT4G31750.1 | 27.778 | 252 | 158 | 8 | 79 | 325 | 64 | 296 | 1.49e-22 | 98.2 |
Msa0500660 | AT4G31750.3 | 27.778 | 252 | 158 | 8 | 79 | 325 | 64 | 296 | 1.49e-22 | 98.2 |
Msa0500660 | AT1G43900.1 | 31.624 | 234 | 135 | 9 | 78 | 306 | 153 | 366 | 4.88e-22 | 97.8 |
Msa0500660 | AT5G10740.1 | 29.562 | 274 | 155 | 12 | 47 | 309 | 34 | 280 | 2.95e-21 | 95.1 |
Msa0500660 | AT5G10740.2 | 29.562 | 274 | 155 | 12 | 47 | 309 | 34 | 280 | 2.95e-21 | 95.1 |
Msa0500660 | AT1G78200.5 | 29.787 | 235 | 140 | 9 | 79 | 306 | 19 | 235 | 3.13e-21 | 92.8 |
Msa0500660 | AT1G78200.4 | 29.787 | 235 | 140 | 9 | 79 | 306 | 19 | 235 | 3.13e-21 | 92.8 |
Msa0500660 | AT5G24940.1 | 29.536 | 237 | 141 | 9 | 79 | 309 | 64 | 280 | 3.53e-21 | 96.3 |
Msa0500660 | AT4G28400.3 | 29.185 | 233 | 141 | 8 | 79 | 306 | 45 | 258 | 4.74e-21 | 92.8 |
Msa0500660 | AT1G78200.1 | 29.487 | 234 | 142 | 8 | 79 | 306 | 64 | 280 | 8.16e-21 | 92.8 |
Msa0500660 | AT1G78200.3 | 29.487 | 234 | 142 | 8 | 79 | 306 | 64 | 280 | 8.16e-21 | 92.8 |
Msa0500660 | AT1G78200.2 | 29.487 | 234 | 142 | 8 | 79 | 306 | 64 | 280 | 8.16e-21 | 92.8 |
Msa0500660 | AT4G28400.1 | 29.185 | 233 | 141 | 8 | 79 | 306 | 67 | 280 | 8.48e-21 | 92.8 |
Msa0500660 | AT1G22280.3 | 28.326 | 233 | 149 | 7 | 79 | 306 | 65 | 284 | 1.58e-20 | 92.0 |
Msa0500660 | AT2G40180.1 | 28.689 | 244 | 155 | 7 | 72 | 308 | 154 | 385 | 3.43e-20 | 92.8 |
Msa0500660 | AT1G67820.2 | 30.667 | 225 | 142 | 5 | 73 | 297 | 109 | 319 | 4.12e-20 | 92.4 |
Msa0500660 | AT1G67820.1 | 30.667 | 225 | 142 | 5 | 73 | 297 | 145 | 355 | 4.48e-20 | 92.8 |
Msa0500660 | AT1G22280.1 | 27.897 | 233 | 144 | 7 | 79 | 306 | 65 | 278 | 9.39e-19 | 86.7 |
Msa0500660 | AT2G30020.1 | 28.333 | 240 | 147 | 10 | 78 | 308 | 169 | 392 | 1.09e-18 | 88.2 |
Msa0500660 | AT2G25620.1 | 29.963 | 267 | 136 | 11 | 78 | 319 | 127 | 367 | 4.49e-18 | 86.3 |
Msa0500660 | AT2G25620.2 | 29.963 | 267 | 136 | 11 | 78 | 319 | 127 | 367 | 4.49e-18 | 86.3 |
Msa0500660 | AT2G20630.1 | 27.451 | 255 | 156 | 11 | 57 | 306 | 46 | 276 | 5.39e-18 | 84.3 |
Msa0500660 | AT1G34750.2 | 29.362 | 235 | 138 | 9 | 79 | 306 | 66 | 279 | 6.69e-18 | 84.3 |
Msa0500660 | AT1G34750.1 | 29.362 | 235 | 138 | 9 | 79 | 306 | 66 | 279 | 6.69e-18 | 84.3 |
Msa0500660 | AT1G34750.3 | 29.362 | 235 | 138 | 9 | 79 | 306 | 66 | 279 | 6.69e-18 | 84.3 |
Msa0500660 | AT2G20630.2 | 27.203 | 261 | 161 | 11 | 57 | 312 | 46 | 282 | 1.44e-17 | 83.6 |
Msa0500660 | AT2G40860.1 | 29.730 | 259 | 141 | 8 | 70 | 310 | 415 | 650 | 1.96e-17 | 85.5 |
Msa0500660 | AT3G51470.2 | 27.715 | 267 | 153 | 10 | 73 | 323 | 56 | 298 | 2.24e-17 | 83.2 |
Msa0500660 | AT2G40860.4 | 29.730 | 259 | 141 | 8 | 70 | 310 | 317 | 552 | 2.36e-17 | 85.1 |
Msa0500660 | AT3G51470.1 | 27.715 | 267 | 153 | 10 | 73 | 323 | 100 | 342 | 5.08e-17 | 82.8 |
Msa0500660 | AT2G34740.2 | 28.704 | 216 | 129 | 6 | 57 | 269 | 116 | 309 | 9.15e-17 | 81.6 |
Msa0500660 | AT2G34740.3 | 28.704 | 216 | 129 | 6 | 57 | 269 | 98 | 291 | 9.37e-17 | 81.3 |
Msa0500660 | AT2G40860.2 | 29.167 | 240 | 125 | 7 | 70 | 284 | 415 | 634 | 4.69e-16 | 81.3 |
Msa0500660 | AT1G17550.1 | 25.685 | 292 | 150 | 10 | 76 | 316 | 234 | 509 | 1.24e-14 | 76.6 |
Msa0500660 | AT1G17550.2 | 25.685 | 292 | 150 | 10 | 76 | 316 | 234 | 509 | 1.24e-14 | 76.6 |
Msa0500660 | AT3G15260.2 | 27.897 | 233 | 144 | 9 | 79 | 306 | 73 | 286 | 1.67e-14 | 74.3 |
Msa0500660 | AT3G15260.1 | 27.897 | 233 | 144 | 9 | 79 | 306 | 73 | 286 | 1.67e-14 | 74.3 |
Msa0500660 | AT2G33700.1 | 27.165 | 254 | 143 | 10 | 78 | 315 | 122 | 349 | 2.46e-14 | 74.7 |
Msa0500660 | AT1G72770.4 | 25.773 | 291 | 150 | 10 | 76 | 316 | 235 | 509 | 9.35e-14 | 73.9 |
Msa0500660 | AT1G72770.1 | 25.773 | 291 | 150 | 10 | 76 | 316 | 235 | 509 | 9.35e-14 | 73.9 |
Msa0500660 | AT1G72770.3 | 25.773 | 291 | 150 | 10 | 76 | 316 | 235 | 509 | 9.35e-14 | 73.9 |
Msa0500660 | AT4G27800.2 | 25.180 | 278 | 154 | 8 | 57 | 297 | 73 | 333 | 2.63e-13 | 71.2 |
Msa0500660 | AT3G62260.3 | 27.668 | 253 | 152 | 11 | 78 | 313 | 26 | 264 | 3.25e-13 | 70.5 |
Msa0500660 | AT4G27800.3 | 25.681 | 257 | 137 | 8 | 57 | 276 | 73 | 312 | 3.62e-13 | 70.9 |
Msa0500660 | AT1G34750.4 | 29.843 | 191 | 108 | 7 | 79 | 263 | 66 | 236 | 5.44e-13 | 68.9 |
Msa0500660 | AT3G62260.1 | 27.203 | 261 | 143 | 11 | 78 | 313 | 115 | 353 | 9.03e-13 | 70.1 |
Msa0500660 | AT3G62260.2 | 27.203 | 261 | 143 | 11 | 78 | 313 | 116 | 354 | 9.24e-13 | 70.1 |
Msa0500660 | AT1G48040.1 | 27.626 | 257 | 134 | 8 | 78 | 306 | 115 | 347 | 1.91e-12 | 68.9 |
Msa0500660 | AT3G06270.1 | 26.014 | 296 | 171 | 11 | 47 | 308 | 61 | 342 | 3.43e-12 | 68.2 |
Msa0500660 | AT5G57050.3 | 33.544 | 158 | 87 | 6 | 80 | 230 | 161 | 307 | 4.15e-12 | 67.4 |
Msa0500660 | AT1G18030.2 | 30.435 | 207 | 105 | 8 | 80 | 264 | 110 | 299 | 4.48e-12 | 67.4 |
Msa0500660 | AT5G26010.1 | 28.959 | 221 | 129 | 11 | 73 | 272 | 67 | 280 | 6.99e-12 | 67.0 |
Msa0500660 | AT3G11410.1 | 26.923 | 234 | 126 | 8 | 76 | 280 | 134 | 351 | 1.19e-11 | 66.6 |
Msa0500660 | AT5G27930.1 | 31.288 | 163 | 98 | 6 | 142 | 294 | 176 | 334 | 1.64e-11 | 66.2 |
Msa0500660 | AT5G27930.2 | 31.288 | 163 | 98 | 6 | 142 | 294 | 176 | 334 | 1.64e-11 | 66.2 |
Msa0500660 | AT3G05640.2 | 31.515 | 165 | 97 | 7 | 141 | 294 | 170 | 329 | 3.30e-11 | 65.1 |
Msa0500660 | AT3G05640.1 | 31.515 | 165 | 97 | 7 | 141 | 294 | 170 | 329 | 3.30e-11 | 65.1 |
Msa0500660 | AT3G05640.3 | 31.515 | 165 | 97 | 7 | 141 | 294 | 170 | 329 | 3.30e-11 | 65.1 |
Msa0500660 | AT5G59220.1 | 27.138 | 269 | 159 | 11 | 32 | 277 | 94 | 348 | 5.16e-11 | 64.7 |
Msa0500660 | AT2G25070.1 | 25.100 | 251 | 117 | 11 | 78 | 273 | 51 | 285 | 8.06e-11 | 63.9 |
Msa0500660 | AT2G25070.2 | 25.100 | 251 | 117 | 11 | 78 | 273 | 51 | 285 | 8.06e-11 | 63.9 |
Find 157 sgRNAs with CRISPR-Local
Find 341 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCTGATATGGTTGTTGTTTA+TGG | 0.088587 | 3_4:+41191612 | Msa0500660:CDS |
CCATGGCTTCTTTCTTCTTT+TGG | 0.118842 | 3_4:-41195476 | None:intergenic |
TTGCCAAGGGCTTTGGTTGC+TGG | 0.194628 | 3_4:+41192728 | Msa0500660:CDS |
TAGATCTGTTCATTTGTATA+TGG | 0.214122 | 3_4:+41195982 | Msa0500660:three_prime_UTR |
AAATCTTCTGATTGTTCATA+TGG | 0.282600 | 3_4:+41195768 | Msa0500660:exon |
CAGAAGTAGGTGGTTTCTCC+TGG | 0.297489 | 3_4:-41195063 | None:intergenic |
TAACAGTAGCATTCTGTTAG+AGG | 0.298403 | 3_4:+41195826 | Msa0500660:three_prime_UTR |
CCATAAACAACAACCATATC+AGG | 0.300008 | 3_4:-41191612 | None:intergenic |
ACACAAAAGAAACCGGTAAA+AGG | 0.325093 | 3_4:+41195091 | Msa0500660:CDS |
ACATCATTCGGTTCCCCTTT+CGG | 0.332670 | 3_4:+41191548 | Msa0500660:CDS |
CTCTCGATCCATTGGTGATA+TGG | 0.341033 | 3_4:+41194218 | Msa0500660:CDS |
AGCAGCGTTGCCAAGGGCTT+TGG | 0.343425 | 3_4:+41192721 | Msa0500660:CDS |
ACCTTCACTTGCTTTACATA+TGG | 0.352054 | 3_4:-41194267 | None:intergenic |
TATAGTTCCCGTACCATATC+TGG | 0.358257 | 3_4:-41195184 | None:intergenic |
CAGGTTATTATTCCTGACTA+TGG | 0.366731 | 3_4:-41196150 | None:intergenic |
ACAGAACCTTTCGCCACTCT+TGG | 0.367913 | 3_4:-41195884 | None:intergenic |
TTTATACAGCTTTCCAATGC+TGG | 0.380887 | 3_4:+41194757 | Msa0500660:intron |
TTATCAGCAGTGATGGAGTC+TGG | 0.394506 | 3_4:+41194791 | Msa0500660:CDS |
ATGGAAGGGAAACGGATATC+AGG | 0.403186 | 3_4:+41195495 | Msa0500660:CDS |
GAAAATCGAGAAACCTGATA+TGG | 0.410088 | 3_4:+41191599 | Msa0500660:CDS |
CATCTGTTTGATCCATAGTC+AGG | 0.412431 | 3_4:+41196138 | Msa0500660:three_prime_UTR |
AGATCTGTTCATTTGTATAT+GGG | 0.412495 | 3_4:+41195983 | Msa0500660:three_prime_UTR |
GAAATTGAGGGAACAATGTC+TGG | 0.417747 | 3_4:+41191516 | Msa0500660:CDS |
ACGTAAGGAAACCGCGTCCC+TGG | 0.425898 | 3_4:+41195427 | Msa0500660:CDS |
GTAACCTTCGTGATTATAGA+AGG | 0.427750 | 3_4:+41193401 | Msa0500660:CDS |
TGAGGGAACAATGTCTGGTC+GGG | 0.434340 | 3_4:+41191521 | Msa0500660:CDS |
AAAGACGCATAGTTTGTTGT+TGG | 0.438079 | 3_4:-41196225 | None:intergenic |
TGATATCCGTTTCCCTTCCA+TGG | 0.439131 | 3_4:-41195493 | None:intergenic |
AGAATACGTTGAGCCAGATA+TGG | 0.445706 | 3_4:+41195171 | Msa0500660:CDS |
ATTTGTATATGGGTCTTGAA+TGG | 0.446612 | 3_4:+41195993 | Msa0500660:three_prime_UTR |
CATAGTCAGGAATAATAACC+TGG | 0.454424 | 3_4:+41196151 | Msa0500660:three_prime_UTR |
GTTAGAGGATTTCTGTGACT+TGG | 0.454685 | 3_4:+41195841 | Msa0500660:three_prime_UTR |
CAGAACCTTTCGCCACTCTT+GGG | 0.456137 | 3_4:-41195883 | None:intergenic |
GAAAATTTACAGCTATTTGA+CGG | 0.459051 | 3_4:+41192602 | Msa0500660:intron |
GTGACTCCCATTATTACATC+GGG | 0.459533 | 3_4:+41195718 | Msa0500660:CDS |
GGATGCTCTAACTGCAGAAA+TGG | 0.466163 | 3_4:+41194813 | Msa0500660:CDS |
CAGGAATCTTTGCAAGCAAA+GGG | 0.469841 | 3_4:+41194998 | Msa0500660:intron |
CACTCATCTCTGTTGAGATC+AGG | 0.470329 | 3_4:-41192695 | None:intergenic |
ACTTGCTTTACATATGGTAC+AGG | 0.473622 | 3_4:-41194261 | None:intergenic |
TTGCATACTTGAACCTTCTG+AGG | 0.473684 | 3_4:+41193460 | Msa0500660:CDS |
GAAGTTGGTCGGCTAAATAC+AGG | 0.477716 | 3_4:+41193656 | Msa0500660:CDS |
AGAAGTAGGTGGTTTCTCCT+GGG | 0.481102 | 3_4:-41195062 | None:intergenic |
AGAAGGTTCAAGTATGCAAC+GGG | 0.481264 | 3_4:-41193456 | None:intergenic |
GCCACTTGTATGCGCAGTGC+AGG | 0.482617 | 3_4:+41196200 | Msa0500660:three_prime_UTR |
TCAGGAATCTTTGCAAGCAA+AGG | 0.482677 | 3_4:+41194997 | Msa0500660:intron |
ACAAACGACTCTTTGACATT+CGG | 0.486429 | 3_4:-41191682 | None:intergenic |
AACAAGTCTTCCTCCAGCAT+TGG | 0.488721 | 3_4:-41194770 | None:intergenic |
CGTAAGGAAACCGCGTCCCT+GGG | 0.493286 | 3_4:+41195428 | Msa0500660:CDS |
CCTTCGTGATTATAGAAGGA+TGG | 0.495959 | 3_4:+41193405 | Msa0500660:CDS |
TAATATATCGACCACGATGC+AGG | 0.497457 | 3_4:-41195038 | None:intergenic |
TGCACCAACACAAAAGAAAC+CGG | 0.497778 | 3_4:+41195084 | Msa0500660:CDS |
AGTGGGTAGCAGCGTTGCCA+AGG | 0.501821 | 3_4:+41192714 | Msa0500660:CDS |
TACTTGAACCTTCTGAGGGC+GGG | 0.503212 | 3_4:+41193465 | Msa0500660:CDS |
TGTCAAGTAGAGATTAAACC+TGG | 0.504586 | 3_4:+41195372 | Msa0500660:CDS |
GGGTGCGCATCACTTCTAGT+GGG | 0.504965 | 3_4:+41193630 | Msa0500660:CDS |
TGTTGTGTTTGAAGAAATTG+AGG | 0.508167 | 3_4:+41191503 | Msa0500660:CDS |
ACGCTTCAACAGCACCGAAA+GGG | 0.508685 | 3_4:-41191562 | None:intergenic |
AGGTTGGTCCGTTGAGATGT+TGG | 0.513837 | 3_4:+41194178 | Msa0500660:intron |
TAATGGGAGTCACAGTTGCT+TGG | 0.518408 | 3_4:-41195708 | None:intergenic |
ATTGTTCAGAAGATTCTCCT+TGG | 0.521763 | 3_4:-41192654 | None:intergenic |
AGGAAACCGCGTCCCTGGGA+TGG | 0.523145 | 3_4:+41195432 | Msa0500660:CDS |
TTGTGTCTCTCTCGATCCAT+TGG | 0.528406 | 3_4:+41194210 | Msa0500660:CDS |
ATATGCACAGCACAAACATC+GGG | 0.532848 | 3_4:+41193371 | Msa0500660:intron |
GCAAAGGAAAGGTCCATCCC+AGG | 0.532857 | 3_4:-41195445 | None:intergenic |
AAGAAGCCATGGAAGGGAAA+CGG | 0.535942 | 3_4:+41195487 | Msa0500660:CDS |
GGACGCGGTTTCCTTACGTT+AGG | 0.536254 | 3_4:-41195423 | None:intergenic |
GGTCCGTTGAGATGTTGGCC+TGG | 0.536343 | 3_4:+41194183 | Msa0500660:CDS |
TGGTCGGGGAGAACATCATT+CGG | 0.536938 | 3_4:+41191536 | Msa0500660:CDS |
CTTCGTGATTATAGAAGGAT+GGG | 0.537043 | 3_4:+41193406 | Msa0500660:CDS |
ACCGGTAAAAGGAATGTTGA+AGG | 0.538747 | 3_4:+41195102 | Msa0500660:CDS |
AGTCTCCTGTTATGAAGCAT+TGG | 0.539442 | 3_4:-41195804 | None:intergenic |
AGACTTGTTATCAGCAGTGA+TGG | 0.542264 | 3_4:+41194784 | Msa0500660:CDS |
GATCTGCCTTGCTTTCAGAA+AGG | 0.546185 | 3_4:+41195215 | Msa0500660:CDS |
ATGAGGGTGCGCCTAACGTA+AGG | 0.546714 | 3_4:+41195412 | Msa0500660:CDS |
ACCAAACCTTTCTGAAAGCA+AGG | 0.546871 | 3_4:-41195221 | None:intergenic |
TTGTCGTGGCATGTCGGCGG+AGG | 0.549386 | 3_4:+41194846 | Msa0500660:CDS |
AATGCTAGCGAGAATAAGAA+AGG | 0.549595 | 3_4:+41191636 | Msa0500660:CDS |
TGGCAACTTAAGCAAAGGAA+AGG | 0.552600 | 3_4:-41195456 | None:intergenic |
ACATGCCACGACAACAATCA+AGG | 0.552840 | 3_4:-41194837 | None:intergenic |
CGCTTCAACAGCACCGAAAG+GGG | 0.554180 | 3_4:-41191561 | None:intergenic |
CGAGAGAGACACAAGCCACC+AGG | 0.557992 | 3_4:-41194201 | None:intergenic |
CTTGCTTTACATATGGTACA+GGG | 0.558530 | 3_4:-41194260 | None:intergenic |
ATATTCAGAAGATTCAATGT+AGG | 0.558567 | 3_4:-41196052 | None:intergenic |
TAATGAAGCCCGCCCTCAGA+AGG | 0.561382 | 3_4:-41193473 | None:intergenic |
AACCTTTCGCCACTCTTGGG+TGG | 0.561700 | 3_4:-41195880 | None:intergenic |
AAGAAGAAAGAAGCCATGGA+AGG | 0.562499 | 3_4:+41195480 | Msa0500660:CDS |
AAGCCAGCAACCAAAGCCCT+TGG | 0.562857 | 3_4:-41192731 | None:intergenic |
TGCATACTTGAACCTTCTGA+GGG | 0.565442 | 3_4:+41193461 | Msa0500660:CDS |
ACGTTGAGCCAGATATGGTA+CGG | 0.565764 | 3_4:+41195176 | Msa0500660:CDS |
AGGGTGCGCATCACTTCTAG+TGG | 0.569055 | 3_4:+41193629 | Msa0500660:CDS |
TTGAGGGAACAATGTCTGGT+CGG | 0.573524 | 3_4:+41191520 | Msa0500660:CDS |
TGCTGCTGCAATTTATGCCA+AGG | 0.573567 | 3_4:+41192637 | Msa0500660:CDS |
AGAAGAAAGAAGCCATGGAA+GGG | 0.574414 | 3_4:+41195481 | Msa0500660:CDS |
CATATGCACAGCACAAACAT+CGG | 0.575210 | 3_4:+41193370 | Msa0500660:intron |
CGTGGTCGATATATTACCCC+AGG | 0.577205 | 3_4:+41195045 | Msa0500660:CDS |
CCAAAAGAAGAAAGAAGCCA+TGG | 0.583569 | 3_4:+41195476 | Msa0500660:CDS |
GTTGTAACAGTTGCATCAGT+TGG | 0.584270 | 3_4:+41193428 | Msa0500660:CDS |
TCTGTTGAGATCAGGAGGAA+TGG | 0.584831 | 3_4:-41192687 | None:intergenic |
ACCAACATCCATATCACCAA+TGG | 0.585265 | 3_4:-41194226 | None:intergenic |
CACGCTTCAACAGCACCGAA+AGG | 0.586769 | 3_4:-41191563 | None:intergenic |
TGTACTGAAATACCCTCCCC+AGG | 0.587459 | 3_4:-41195390 | None:intergenic |
ATACTTGAACCTTCTGAGGG+CGG | 0.588848 | 3_4:+41193464 | Msa0500660:CDS |
TGATCTCAACAGAGATGAGT+GGG | 0.595669 | 3_4:+41192697 | Msa0500660:CDS |
AAAGGTCCATCCCAGGGACG+CGG | 0.595744 | 3_4:-41195438 | None:intergenic |
GAGGGAACAATGTCTGGTCG+GGG | 0.598719 | 3_4:+41191522 | Msa0500660:CDS |
TCCATTGGTGATATGGATGT+TGG | 0.599313 | 3_4:+41194225 | Msa0500660:CDS |
TGTGACTCCCATTATTACAT+CGG | 0.599756 | 3_4:+41195717 | Msa0500660:CDS |
AGTAGAGATTAAACCTGGGG+AGG | 0.600098 | 3_4:+41195377 | Msa0500660:CDS |
CAGCTATTTGACGGACACAA+TGG | 0.601732 | 3_4:+41192611 | Msa0500660:intron |
GTTGTGTTTGAAGAAATTGA+GGG | 0.602546 | 3_4:+41191504 | Msa0500660:CDS |
GTAGAGATTAAACCTGGGGA+GGG | 0.602809 | 3_4:+41195378 | Msa0500660:CDS |
TGTGTTGGTGCAGAAGTAGG+TGG | 0.603408 | 3_4:-41195073 | None:intergenic |
GTGGGTAGCAGCGTTGCCAA+GGG | 0.603465 | 3_4:+41192715 | Msa0500660:CDS |
CAGAAGGTTCAAGTATGCAA+CGG | 0.604075 | 3_4:-41193457 | None:intergenic |
GACTCCCATTATTACATCGG+GGG | 0.606915 | 3_4:+41195720 | Msa0500660:CDS |
CAAAGGAAAGGTCCATCCCA+GGG | 0.607760 | 3_4:-41195444 | None:intergenic |
TCATCTCTGTTGAGATCAGG+AGG | 0.608530 | 3_4:-41192692 | None:intergenic |
TACTATTGCATAATACAACA+AGG | 0.609547 | 3_4:-41196022 | None:intergenic |
ATGGTCCTTGATTGTTGTCG+TGG | 0.610413 | 3_4:+41194832 | Msa0500660:CDS |
TGGAATGCTCAACAGGATGT+CGG | 0.611135 | 3_4:+41195914 | Msa0500660:three_prime_UTR |
GCCTGCACTGCGCATACAAG+TGG | 0.614389 | 3_4:-41196201 | None:intergenic |
TATCAGCAGTGATGGAGTCT+GGG | 0.616566 | 3_4:+41194792 | Msa0500660:CDS |
ATAGTCAGGAATAATAACCT+GGG | 0.617389 | 3_4:+41196152 | Msa0500660:three_prime_UTR |
CTGATCTCAACAGAGATGAG+TGG | 0.619687 | 3_4:+41192696 | Msa0500660:CDS |
CGTTGAGCCAGATATGGTAC+GGG | 0.620610 | 3_4:+41195177 | Msa0500660:CDS |
ACCATATGTAAAGCAAGTGA+AGG | 0.621718 | 3_4:+41194266 | Msa0500660:CDS |
ATACAGCTTTCCAATGCTGG+AGG | 0.622202 | 3_4:+41194760 | Msa0500660:intron |
GGAGGGTATTTCAGTACATG+AGG | 0.623571 | 3_4:+41195395 | Msa0500660:CDS |
GGTCGGCTAAATACAGGCGG+AGG | 0.624068 | 3_4:+41193662 | Msa0500660:CDS |
AAATACAGGCGGAGGTGCAG+AGG | 0.629751 | 3_4:+41193670 | Msa0500660:CDS |
CTTGTCAGCAGATCATCGAC+TGG | 0.635215 | 3_4:+41193496 | Msa0500660:CDS |
GTGCGCATCACTTCTAGTGG+GGG | 0.635281 | 3_4:+41193632 | Msa0500660:CDS |
ACTCTTGTAGAAATAACCCC+AGG | 0.637035 | 3_4:-41196169 | None:intergenic |
GAAGTAGGTGGTTTCTCCTG+GGG | 0.638132 | 3_4:-41195061 | None:intergenic |
GGTGCGCATCACTTCTAGTG+GGG | 0.638228 | 3_4:+41193631 | Msa0500660:CDS |
GTCAAGTAGAGATTAAACCT+GGG | 0.644282 | 3_4:+41195373 | Msa0500660:CDS |
GAATATGAACCACCCAAGAG+TGG | 0.645393 | 3_4:+41195871 | Msa0500660:three_prime_UTR |
TGATTGTTGTCGTGGCATGT+CGG | 0.646140 | 3_4:+41194840 | Msa0500660:CDS |
TGCGCATACAAGTGGCAGTG+TGG | 0.654439 | 3_4:-41196193 | None:intergenic |
GTACGGGAACTATACGAGGA+AGG | 0.659927 | 3_4:+41195193 | Msa0500660:CDS |
CCGTTGAGATGTTGGCCTGG+TGG | 0.663273 | 3_4:+41194186 | Msa0500660:CDS |
AACCACCCAAGAGTGGCGAA+AGG | 0.663603 | 3_4:+41195878 | Msa0500660:three_prime_UTR |
CCACCAGGCCAACATCTCAA+CGG | 0.675490 | 3_4:-41194186 | None:intergenic |
TCAAGTAGAGATTAAACCTG+GGG | 0.678261 | 3_4:+41195374 | Msa0500660:CDS |
TGTCAAAGAGTCGTTTGTGA+TGG | 0.680422 | 3_4:+41191687 | Msa0500660:CDS |
AACTTGAACATGTTGCAGAG+TGG | 0.681139 | 3_4:-41195333 | None:intergenic |
GAGGGTATTTCAGTACATGA+GGG | 0.690141 | 3_4:+41195396 | Msa0500660:CDS |
TGACTCCCATTATTACATCG+GGG | 0.695633 | 3_4:+41195719 | Msa0500660:CDS |
ACTATTGCATAATACAACAA+GGG | 0.697633 | 3_4:-41196021 | None:intergenic |
CCATCCTTCTATAATCACGA+AGG | 0.697805 | 3_4:-41193405 | None:intergenic |
GTTGGTCGGCTAAATACAGG+CGG | 0.700243 | 3_4:+41193659 | Msa0500660:CDS |
AACATACGAAGATGACTCAG+AGG | 0.704568 | 3_4:-41195143 | None:intergenic |
TAGTCAGGAATAATAACCTG+GGG | 0.711673 | 3_4:+41196153 | Msa0500660:three_prime_UTR |
AATGCTCAACAGGATGTCGG+AGG | 0.712144 | 3_4:+41195917 | Msa0500660:three_prime_UTR |
TTGTTGTCGTGGCATGTCGG+CGG | 0.717945 | 3_4:+41194843 | Msa0500660:CDS |
TATGGTACGGGAACTATACG+AGG | 0.726277 | 3_4:+41195189 | Msa0500660:CDS |
AGATGACACAACCTGCATCG+TGG | 0.745057 | 3_4:+41195027 | Msa0500660:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTTTAAAATTCTAATTTGA+TGG | + | chr3_4:41191767-41191786 | Msa0500660:intron | 10.0% |
!! | TAAATTAAATTACTTGAAGA+TGG | - | chr3_4:41191343-41191362 | None:intergenic | 15.0% |
!!! | ATATTGTATTTTTCTTTACT+TGG | + | chr3_4:41192538-41192557 | Msa0500660:intron | 15.0% |
!!! | TAGAGTTAGTTTTATTTTTT+TGG | + | chr3_4:41193188-41193207 | Msa0500660:intron | 15.0% |
!!! | TCTATTTTTTTTTCTTCTTA+AGG | + | chr3_4:41193319-41193338 | Msa0500660:intron | 15.0% |
!! | AAAAGAAATAGTATTAATAG+AGG | - | chr3_4:41193842-41193861 | None:intergenic | 15.0% |
!! | ATAGATTCAAAAGTAAAATT+AGG | + | chr3_4:41193895-41193914 | Msa0500660:intron | 15.0% |
!!! | GATTCATTAATACTTTTTTT+AGG | + | chr3_4:41194101-41194120 | Msa0500660:intron | 15.0% |
!! | AATATAAAACTAAACTTAAG+TGG | - | chr3_4:41194367-41194386 | None:intergenic | 15.0% |
!!! | TGTATTTTTAAGTCATTTAT+AGG | + | chr3_4:41194642-41194661 | Msa0500660:intron | 15.0% |
!! | AATTAGAACAATTAACAAAT+AGG | - | chr3_4:41194715-41194734 | None:intergenic | 15.0% |
!!! | TTTCTACATATTCTGTTTTT+GGG | + | chr3_4:41191712-41191731 | Msa0500660:CDS | 20.0% |
!! | CATCAAATATTTATGTGATT+TGG | + | chr3_4:41191962-41191981 | Msa0500660:intron | 20.0% |
!!! | TTTTACTTATTATTTTGGTG+TGG | + | chr3_4:41192017-41192036 | Msa0500660:intron | 20.0% |
!! | ATCAAGAAAAGTAAATGATT+GGG | + | chr3_4:41192047-41192066 | Msa0500660:intron | 20.0% |
!!! | ATTCAATTTGCTAAACTATT+TGG | - | chr3_4:41192350-41192369 | None:intergenic | 20.0% |
!! | TTTAGCAAATTGAATATACA+CGG | + | chr3_4:41192355-41192374 | Msa0500660:intron | 20.0% |
!! | CTTCATAACCAAATATTTAA+TGG | - | chr3_4:41192822-41192841 | None:intergenic | 20.0% |
!!! | ATTTTTTTACTCTGAGAATT+GGG | - | chr3_4:41192916-41192935 | None:intergenic | 20.0% |
!!! | AATTTTTTTACTCTGAGAAT+TGG | - | chr3_4:41192917-41192936 | None:intergenic | 20.0% |
!! | AGGTTAGAAAAATATTATTG+AGG | - | chr3_4:41192999-41193018 | None:intergenic | 20.0% |
!!! | AATATTTTTCTAACCTCTTT+TGG | + | chr3_4:41193003-41193022 | Msa0500660:intron | 20.0% |
!! | AATAAAACTAACTCTACTAT+AGG | - | chr3_4:41193184-41193203 | None:intergenic | 20.0% |
!! | AAAAATGGATAACAGTTTAA+AGG | - | chr3_4:41193703-41193722 | None:intergenic | 20.0% |
!!! | GGTTTTTGTTGTATTTTATT+GGG | - | chr3_4:41193771-41193790 | None:intergenic | 20.0% |
!!! | TGGTTTTTGTTGTATTTTAT+TGG | - | chr3_4:41193772-41193791 | None:intergenic | 20.0% |
!!! | ACTACGTTAATGATTTTTAT+AGG | + | chr3_4:41194158-41194177 | Msa0500660:intron | 20.0% |
!!! | TAGTATTTTTGGAAAACAAA+AGG | - | chr3_4:41194532-41194551 | None:intergenic | 20.0% |
!! | ACTAATTGATGAAACAAAAA+TGG | + | chr3_4:41194570-41194589 | Msa0500660:intron | 20.0% |
!!! | CAAAAATGGAAGTATTTTAA+TGG | + | chr3_4:41194584-41194603 | Msa0500660:intron | 20.0% |
!!! | TTATATTCCTTTTTTGTTTC+TGG | + | chr3_4:41195956-41195975 | Msa0500660:three_prime_UTR | 20.0% |
!!! | TGATTTGTTTCCTGATTTTT+AGG | + | chr3_4:41191435-41191454 | Msa0500660:intron | 25.0% |
! | TTGTTGAAATCCTAAAAATC+AGG | - | chr3_4:41191448-41191467 | None:intergenic | 25.0% |
!! | GTTTCTACATATTCTGTTTT+TGG | + | chr3_4:41191711-41191730 | Msa0500660:CDS | 25.0% |
!!! | TTCTACATATTCTGTTTTTG+GGG | + | chr3_4:41191713-41191732 | Msa0500660:CDS | 25.0% |
!! | CAAATATTTATGTGATTTGG+AGG | + | chr3_4:41191965-41191984 | Msa0500660:intron | 25.0% |
! | GATCAAGAAAAGTAAATGAT+TGG | + | chr3_4:41192046-41192065 | Msa0500660:intron | 25.0% |
! | TTGAAGTTTCAACAATATCA+CGG | - | chr3_4:41192139-41192158 | None:intergenic | 25.0% |
!!! | TAAACTATTTGGTGTATCTT+TGG | - | chr3_4:41192339-41192358 | None:intergenic | 25.0% |
! | TATGCATTCGTTGTATAAAA+AGG | - | chr3_4:41192503-41192522 | None:intergenic | 25.0% |
! | GAAAATTTACAGCTATTTGA+CGG | + | chr3_4:41192602-41192621 | Msa0500660:intron | 25.0% |
!! | AATCTTCTGAACAATGTTTT+AGG | + | chr3_4:41192662-41192681 | Msa0500660:CDS | 25.0% |
!! | GATAAAGATTTTCAACAGAA+AGG | + | chr3_4:41192764-41192783 | Msa0500660:CDS | 25.0% |
! | CATAACCAAATATTTAATGG+AGG | - | chr3_4:41192819-41192838 | None:intergenic | 25.0% |
! | AACAGATAAAAAAAAGACCA+GGG | - | chr3_4:41193043-41193062 | None:intergenic | 25.0% |
! | AAACAGATAAAAAAAAGACC+AGG | - | chr3_4:41193044-41193063 | None:intergenic | 25.0% |
! | TATTGTGTAGATATTGTTAC+TGG | + | chr3_4:41193213-41193232 | Msa0500660:intron | 25.0% |
! | ATTGTGTAGATATTGTTACT+GGG | + | chr3_4:41193214-41193233 | Msa0500660:intron | 25.0% |
! | AATAGAAAAATCATGAACTG+AGG | - | chr3_4:41193305-41193324 | None:intergenic | 25.0% |
!! | AAGAAGAGTAAGTTTTTACT+GGG | + | chr3_4:41193528-41193547 | Msa0500660:intron | 25.0% |
!!! | TTATCCATTTTTATCTCTGA+TGG | + | chr3_4:41193711-41193730 | Msa0500660:intron | 25.0% |
! | AATACCATCAGAGATAAAAA+TGG | - | chr3_4:41193718-41193737 | None:intergenic | 25.0% |
!!! | CAATGATTTGTTGTTTTTAG+TGG | - | chr3_4:41193798-41193817 | None:intergenic | 25.0% |
! | CACTAAAAACAACAAATCAT+TGG | + | chr3_4:41193796-41193815 | Msa0500660:intron | 25.0% |
! | AAATTAGGTCAATCATATCA+TGG | + | chr3_4:41193910-41193929 | Msa0500660:intron | 25.0% |
! | AATTAGGTCAATCATATCAT+GGG | + | chr3_4:41193911-41193930 | Msa0500660:intron | 25.0% |
!! | CGTTAATGATTTTTATAGGT+TGG | + | chr3_4:41194162-41194181 | Msa0500660:intron | 25.0% |
! | AAACTAAACTTAAGTGGATA+CGG | - | chr3_4:41194361-41194380 | None:intergenic | 25.0% |
!! | ATTTTCATAAGATTAACTGC+TGG | + | chr3_4:41194461-41194480 | Msa0500660:intron | 25.0% |
!! | GGCAAAATCATTAGTATTTT+TGG | - | chr3_4:41194543-41194562 | None:intergenic | 25.0% |
! | TTTCATCAATTAGTGTTCAA+GGG | - | chr3_4:41194564-41194583 | None:intergenic | 25.0% |
! | AATGGAAAACAAAGTAGTTA+TGG | + | chr3_4:41194602-41194621 | Msa0500660:intron | 25.0% |
! | AAGTTAACAAATGAGTAACA+AGG | - | chr3_4:41194944-41194963 | None:intergenic | 25.0% |
! | ATCTGAAAGCAATATATTGA+AGG | - | chr3_4:41195596-41195615 | None:intergenic | 25.0% |
! | AAATCTTCTGATTGTTCATA+TGG | + | chr3_4:41195768-41195787 | Msa0500660:exon | 25.0% |
! | TAGATCTGTTCATTTGTATA+TGG | + | chr3_4:41195982-41196001 | Msa0500660:three_prime_UTR | 25.0% |
! | AGATCTGTTCATTTGTATAT+GGG | + | chr3_4:41195983-41196002 | Msa0500660:three_prime_UTR | 25.0% |
! | ACTATTGCATAATACAACAA+GGG | - | chr3_4:41196024-41196043 | None:intergenic | 25.0% |
! | TACTATTGCATAATACAACA+AGG | - | chr3_4:41196025-41196044 | None:intergenic | 25.0% |
! | ATATTCAGAAGATTCAATGT+AGG | - | chr3_4:41196055-41196074 | None:intergenic | 25.0% |
TGTTGTGTTTGAAGAAATTG+AGG | + | chr3_4:41191503-41191522 | Msa0500660:CDS | 30.0% | |
GTTGTGTTTGAAGAAATTGA+GGG | + | chr3_4:41191504-41191523 | Msa0500660:CDS | 30.0% | |
! | CTTAACTATGTTGTGCATTT+TGG | + | chr3_4:41192080-41192099 | Msa0500660:intron | 30.0% |
! | TTTTGGATTGACTGTGAATT+TGG | + | chr3_4:41192097-41192116 | Msa0500660:intron | 30.0% |
!!! | AGTTTTGTTGCTAAAGTCAA+AGG | + | chr3_4:41192164-41192183 | Msa0500660:intron | 30.0% |
!! | GTTTTGTTGCTAAAGTCAAA+GGG | + | chr3_4:41192165-41192184 | Msa0500660:intron | 30.0% |
! | TTTTGTTGCTAAAGTCAAAG+GGG | + | chr3_4:41192166-41192185 | Msa0500660:intron | 30.0% |
GCAAAGTCAACCAAAAAAAA+AGG | - | chr3_4:41192255-41192274 | None:intergenic | 30.0% | |
AAACAAAACCATTGCTTTGA+GGG | - | chr3_4:41192437-41192456 | None:intergenic | 30.0% | |
AAAACAAAACCATTGCTTTG+AGG | - | chr3_4:41192438-41192457 | None:intergenic | 30.0% | |
! | AGATTTTCAACAGAAAGGTA+TGG | + | chr3_4:41192769-41192788 | Msa0500660:intron | 30.0% |
TCTTGCCTCCATTAAATATT+TGG | + | chr3_4:41192811-41192830 | Msa0500660:intron | 30.0% | |
ATTCATATGAAGATTCCAGA+TGG | - | chr3_4:41192859-41192878 | None:intergenic | 30.0% | |
AGAACAATGAGACAAAAAAC+AGG | + | chr3_4:41192939-41192958 | Msa0500660:intron | 30.0% | |
! | GCAGTTATTAAATTTTCTGC+AGG | + | chr3_4:41193090-41193109 | Msa0500660:intron | 30.0% |
ACTAACTCTACTATAGGTAT+GGG | - | chr3_4:41193178-41193197 | None:intergenic | 30.0% | |
AACTAACTCTACTATAGGTA+TGG | - | chr3_4:41193179-41193198 | None:intergenic | 30.0% | |
TTGTGTAGATATTGTTACTG+GGG | + | chr3_4:41193215-41193234 | Msa0500660:intron | 30.0% | |
! | GAAGAAGAGTAAGTTTTTAC+TGG | + | chr3_4:41193527-41193546 | Msa0500660:intron | 30.0% |
! | TCGTTTCATTTTCTTTCATC+AGG | + | chr3_4:41193606-41193625 | Msa0500660:intron | 30.0% |
! | TTTCATTTTCTTTCATCAGG+AGG | + | chr3_4:41193609-41193628 | Msa0500660:intron | 30.0% |
! | TTCATTTTCTTTCATCAGGA+GGG | + | chr3_4:41193610-41193629 | Msa0500660:intron | 30.0% |
!! | ATGGTATTGACTACCTAAAA+AGG | + | chr3_4:41193730-41193749 | Msa0500660:intron | 30.0% |
! | ATGAGTCTTTAAGCCTTTTT+AGG | - | chr3_4:41193746-41193765 | None:intergenic | 30.0% |
!!! | TTTGTTGTTTTTAGTGGTAG+TGG | - | chr3_4:41193792-41193811 | None:intergenic | 30.0% |
ATTAGGTCAATCATATCATG+GGG | + | chr3_4:41193912-41193931 | Msa0500660:intron | 30.0% | |
!! | CTTAAAAGTACTCATGACAT+AGG | + | chr3_4:41193984-41194003 | Msa0500660:intron | 30.0% |
AACTAAACTTAAGTGGATAC+GGG | - | chr3_4:41194360-41194379 | None:intergenic | 30.0% | |
GTTTCATCAATTAGTGTTCA+AGG | - | chr3_4:41194565-41194584 | None:intergenic | 30.0% | |
GTGAATTTCATAAGGGATAA+TGG | - | chr3_4:41194688-41194707 | None:intergenic | 30.0% | |
! | AGGTCTTGTGAATTTCATAA+GGG | - | chr3_4:41194695-41194714 | None:intergenic | 30.0% |
! | TAGGTCTTGTGAATTTCATA+AGG | - | chr3_4:41194696-41194715 | None:intergenic | 30.0% |
! | GAGCATACTTTTACAATATG+TGG | - | chr3_4:41194880-41194899 | None:intergenic | 30.0% |
GAAAGCAATATATTGAAGGA+GGG | - | chr3_4:41195592-41195611 | None:intergenic | 30.0% | |
TGAAAGCAATATATTGAAGG+AGG | - | chr3_4:41195593-41195612 | None:intergenic | 30.0% | |
TCTACATCCAGAAACAAAAA+AGG | - | chr3_4:41195966-41195985 | None:intergenic | 30.0% | |
ATTTGTATATGGGTCTTGAA+TGG | + | chr3_4:41195993-41196012 | Msa0500660:three_prime_UTR | 30.0% | |
ATAGTCAGGAATAATAACCT+GGG | + | chr3_4:41196152-41196171 | Msa0500660:three_prime_UTR | 30.0% | |
GTTGAGATACGTTGAAATGT+CGG | - | chr3_4:41191294-41191313 | None:intergenic | 35.0% | |
TTGCGTGAGGATTAAATTGA+AGG | + | chr3_4:41191477-41191496 | Msa0500660:intron | 35.0% | |
GAAAATCGAGAAACCTGATA+TGG | + | chr3_4:41191599-41191618 | Msa0500660:CDS | 35.0% | |
CCATAAACAACAACCATATC+AGG | - | chr3_4:41191615-41191634 | None:intergenic | 35.0% | |
!! | CCTGATATGGTTGTTGTTTA+TGG | + | chr3_4:41191612-41191631 | Msa0500660:CDS | 35.0% |
AATGCTAGCGAGAATAAGAA+AGG | + | chr3_4:41191636-41191655 | Msa0500660:CDS | 35.0% | |
ACAAACGACTCTTTGACATT+CGG | - | chr3_4:41191685-41191704 | None:intergenic | 35.0% | |
! | TGACTGTGAATTTGGTGAAA+TGG | + | chr3_4:41192105-41192124 | Msa0500660:intron | 35.0% |
!! | TGTATCTTTGGAATCACAGT+GGG | - | chr3_4:41192327-41192346 | None:intergenic | 35.0% |
AGCAAATTGAATATACACGG+AGG | + | chr3_4:41192358-41192377 | Msa0500660:intron | 35.0% | |
CAGAAAATGCAAATGCAACA+TGG | - | chr3_4:41192577-41192596 | None:intergenic | 35.0% | |
ATTGTTCAGAAGATTCTCCT+TGG | - | chr3_4:41192657-41192676 | None:intergenic | 35.0% | |
GCAATTTCATAATCTCCATC+TGG | + | chr3_4:41192841-41192860 | Msa0500660:intron | 35.0% | |
! | TGAGACAAAAAACAGGTTGA+TGG | + | chr3_4:41192946-41192965 | Msa0500660:intron | 35.0% |
TGTCTAATGTACATAGAGCA+TGG | + | chr3_4:41193126-41193145 | Msa0500660:intron | 35.0% | |
GTAACCTTCGTGATTATAGA+AGG | + | chr3_4:41193401-41193420 | Msa0500660:CDS | 35.0% | |
CTTCGTGATTATAGAAGGAT+GGG | + | chr3_4:41193406-41193425 | Msa0500660:CDS | 35.0% | |
GAGACTTTACTGCAATGTAA+TGG | - | chr3_4:41193585-41193604 | None:intergenic | 35.0% | |
!! | AAATCATTGGCTTGTCGAAT+GGG | + | chr3_4:41193809-41193828 | Msa0500660:intron | 35.0% |
CTTGCTTTACATATGGTACA+GGG | - | chr3_4:41194263-41194282 | None:intergenic | 35.0% | |
ACTTGCTTTACATATGGTAC+AGG | - | chr3_4:41194264-41194283 | None:intergenic | 35.0% | |
ACCATATGTAAAGCAAGTGA+AGG | + | chr3_4:41194266-41194285 | Msa0500660:CDS | 35.0% | |
ACCTTCACTTGCTTTACATA+TGG | - | chr3_4:41194270-41194289 | None:intergenic | 35.0% | |
TATGTAAAGCAAGTGAAGGT+TGG | + | chr3_4:41194270-41194289 | Msa0500660:intron | 35.0% | |
!! | TCTAATTCATTTTTCCCCTC+TGG | + | chr3_4:41194728-41194747 | Msa0500660:intron | 35.0% |
TGTATAAATAGAAGCCAGAG+GGG | - | chr3_4:41194745-41194764 | None:intergenic | 35.0% | |
CTGTATAAATAGAAGCCAGA+GGG | - | chr3_4:41194746-41194765 | None:intergenic | 35.0% | |
TTTATACAGCTTTCCAATGC+TGG | + | chr3_4:41194757-41194776 | Msa0500660:intron | 35.0% | |
AAGATTCCTGAAGAAAGCAA+AGG | - | chr3_4:41194988-41195007 | None:intergenic | 35.0% | |
!!! | TTTACCGGTTTCTTTTGTGT+TGG | - | chr3_4:41195091-41195110 | None:intergenic | 35.0% |
ACACAAAAGAAACCGGTAAA+AGG | + | chr3_4:41195091-41195110 | Msa0500660:CDS | 35.0% | |
TGTCAAGTAGAGATTAAACC+TGG | + | chr3_4:41195372-41195391 | Msa0500660:CDS | 35.0% | |
GTCAAGTAGAGATTAAACCT+GGG | + | chr3_4:41195373-41195392 | Msa0500660:CDS | 35.0% | |
TCAAGTAGAGATTAAACCTG+GGG | + | chr3_4:41195374-41195393 | Msa0500660:CDS | 35.0% | |
! | TCTTTTGGCAACTTAAGCAA+AGG | - | chr3_4:41195464-41195483 | None:intergenic | 35.0% |
AACTCGAGAATCAACATCAA+TGG | - | chr3_4:41195548-41195567 | None:intergenic | 35.0% | |
TGAAGGAGGGAAATAGATTA+TGG | - | chr3_4:41195579-41195598 | None:intergenic | 35.0% | |
TGTGACTCCCATTATTACAT+CGG | + | chr3_4:41195717-41195736 | Msa0500660:CDS | 35.0% | |
! | GTTTTCCAATGCTTCATAAC+AGG | + | chr3_4:41195799-41195818 | Msa0500660:three_prime_UTR | 35.0% |
TAACAGTAGCATTCTGTTAG+AGG | + | chr3_4:41195826-41195845 | Msa0500660:three_prime_UTR | 35.0% | |
CGAAAGGTTCTGTAAAAAGA+TGG | + | chr3_4:41195894-41195913 | Msa0500660:three_prime_UTR | 35.0% | |
AAAAAGATGGAATGCTCAAC+AGG | + | chr3_4:41195907-41195926 | Msa0500660:three_prime_UTR | 35.0% | |
CAGGTTATTATTCCTGACTA+TGG | - | chr3_4:41196153-41196172 | None:intergenic | 35.0% | |
CATAGTCAGGAATAATAACC+TGG | + | chr3_4:41196151-41196170 | Msa0500660:three_prime_UTR | 35.0% | |
TAGTCAGGAATAATAACCTG+GGG | + | chr3_4:41196153-41196172 | Msa0500660:three_prime_UTR | 35.0% | |
!! | AAAGACGCATAGTTTGTTGT+TGG | - | chr3_4:41196228-41196247 | None:intergenic | 35.0% |
! | TGCAAGTTTTGCAGAACAAC+AGG | + | chr3_4:41191266-41191285 | Msa0500660:intron | 40.0% |
GAAATTGAGGGAACAATGTC+TGG | + | chr3_4:41191516-41191535 | Msa0500660:CDS | 40.0% | |
TGTCAAAGAGTCGTTTGTGA+TGG | + | chr3_4:41191687-41191706 | Msa0500660:CDS | 40.0% | |
!!! | CTTTTGATGGAAAGCACTCT+TGG | + | chr3_4:41191817-41191836 | Msa0500660:intron | 40.0% |
TCAAGTGTCTGTTACCAACA+CGG | + | chr3_4:41191842-41191861 | Msa0500660:intron | 40.0% | |
! | TTTACTAGTGTCGAGTTGTC+AGG | + | chr3_4:41191895-41191914 | Msa0500660:intron | 40.0% |
! | TTACTAGTGTCGAGTTGTCA+GGG | + | chr3_4:41191896-41191915 | Msa0500660:intron | 40.0% |
! | CTGTGAATTTGGTGAAATGG+CGG | + | chr3_4:41192108-41192127 | Msa0500660:intron | 40.0% |
!! | AGCTCAATAATGGGCTTGTT+TGG | - | chr3_4:41192224-41192243 | None:intergenic | 40.0% |
ACAAGCCCATTATTGAGCTA+CGG | + | chr3_4:41192225-41192244 | Msa0500660:intron | 40.0% | |
CTTTGCAAAAGCGAACACTT+TGG | + | chr3_4:41192269-41192288 | Msa0500660:intron | 40.0% | |
! | CAGTGGGTTTGATAAAGTCA+GGG | - | chr3_4:41192311-41192330 | None:intergenic | 40.0% |
! | ACAGTGGGTTTGATAAAGTC+AGG | - | chr3_4:41192312-41192331 | None:intergenic | 40.0% |
!! | GTGTATCTTTGGAATCACAG+TGG | - | chr3_4:41192328-41192347 | None:intergenic | 40.0% |
!! | AAAACCATTGCTTTGAGGGT+GGG | - | chr3_4:41192433-41192452 | None:intergenic | 40.0% |
! | GTGTATCTGAAAGCATAGTG+TGG | + | chr3_4:41192477-41192496 | Msa0500660:intron | 40.0% |
TGATCTCAACAGAGATGAGT+GGG | + | chr3_4:41192697-41192716 | Msa0500660:CDS | 40.0% | |
! | TTGATGGATACAGAACACGA+TGG | + | chr3_4:41192962-41192981 | Msa0500660:intron | 40.0% |
GGTACAAGAATCATCAGTCA+TGG | - | chr3_4:41193284-41193303 | None:intergenic | 40.0% | |
CATATGCACAGCACAAACAT+CGG | + | chr3_4:41193370-41193389 | Msa0500660:intron | 40.0% | |
ATATGCACAGCACAAACATC+GGG | + | chr3_4:41193371-41193390 | Msa0500660:intron | 40.0% | |
CCATCCTTCTATAATCACGA+AGG | - | chr3_4:41193408-41193427 | None:intergenic | 40.0% | |
CCTTCGTGATTATAGAAGGA+TGG | + | chr3_4:41193405-41193424 | Msa0500660:CDS | 40.0% | |
GTTGTAACAGTTGCATCAGT+TGG | + | chr3_4:41193428-41193447 | Msa0500660:CDS | 40.0% | |
AGAAGGTTCAAGTATGCAAC+GGG | - | chr3_4:41193459-41193478 | None:intergenic | 40.0% | |
CAGAAGGTTCAAGTATGCAA+CGG | - | chr3_4:41193460-41193479 | None:intergenic | 40.0% | |
TTGCATACTTGAACCTTCTG+AGG | + | chr3_4:41193460-41193479 | Msa0500660:CDS | 40.0% | |
TGCATACTTGAACCTTCTGA+GGG | + | chr3_4:41193461-41193480 | Msa0500660:CDS | 40.0% | |
!! | CAAATCATTGGCTTGTCGAA+TGG | + | chr3_4:41193808-41193827 | Msa0500660:intron | 40.0% |
! | TCCATTGGTGATATGGATGT+TGG | + | chr3_4:41194225-41194244 | Msa0500660:CDS | 40.0% |
ACCAACATCCATATCACCAA+TGG | - | chr3_4:41194229-41194248 | None:intergenic | 40.0% | |
CAATATTGCTGCATGTGCAA+AGG | - | chr3_4:41194306-41194325 | None:intergenic | 40.0% | |
CTGCAGCAATAAAGCAACAA+AGG | - | chr3_4:41194507-41194526 | None:intergenic | 40.0% | |
!! | CTTTGTTGCTTTATTGCTGC+AGG | + | chr3_4:41194505-41194524 | Msa0500660:intron | 40.0% |
GCTGTATAAATAGAAGCCAG+AGG | - | chr3_4:41194747-41194766 | None:intergenic | 40.0% | |
!! | AGACTTGTTATCAGCAGTGA+TGG | + | chr3_4:41194784-41194803 | Msa0500660:CDS | 40.0% |
TCATGTCCTTTGCTTTCTTC+AGG | + | chr3_4:41194979-41194998 | Msa0500660:intron | 40.0% | |
TCAGGAATCTTTGCAAGCAA+AGG | + | chr3_4:41194997-41195016 | Msa0500660:intron | 40.0% | |
CAGGAATCTTTGCAAGCAAA+GGG | + | chr3_4:41194998-41195017 | Msa0500660:intron | 40.0% | |
TAATATATCGACCACGATGC+AGG | - | chr3_4:41195041-41195060 | None:intergenic | 40.0% | |
!! | TTTTGTGTTGGTGCAGAAGT+AGG | - | chr3_4:41195079-41195098 | None:intergenic | 40.0% |
TGCACCAACACAAAAGAAAC+CGG | + | chr3_4:41195084-41195103 | Msa0500660:CDS | 40.0% | |
ACCGGTAAAAGGAATGTTGA+AGG | + | chr3_4:41195102-41195121 | Msa0500660:CDS | 40.0% | |
! | GCCTTCAACATTCCTTTTAC+CGG | - | chr3_4:41195106-41195125 | None:intergenic | 40.0% |
! | AGAGGACTTTTTGCGGAAAA+TGG | - | chr3_4:41195128-41195147 | None:intergenic | 40.0% |
! | ATGACTCAGAGGACTTTTTG+CGG | - | chr3_4:41195135-41195154 | None:intergenic | 40.0% |
AACATACGAAGATGACTCAG+AGG | - | chr3_4:41195146-41195165 | None:intergenic | 40.0% | |
AGAATACGTTGAGCCAGATA+TGG | + | chr3_4:41195171-41195190 | Msa0500660:CDS | 40.0% | |
TATAGTTCCCGTACCATATC+TGG | - | chr3_4:41195187-41195206 | None:intergenic | 40.0% | |
! | ACCAAACCTTTCTGAAAGCA+AGG | - | chr3_4:41195224-41195243 | None:intergenic | 40.0% |
! | TTTGCAGCTTGTTCTCTAGT+TGG | + | chr3_4:41195257-41195276 | Msa0500660:intron | 40.0% |
AACATCTTTGTCTGAACTGC+AGG | + | chr3_4:41195295-41195314 | Msa0500660:intron | 40.0% | |
AACTTGAACATGTTGCAGAG+TGG | - | chr3_4:41195336-41195355 | None:intergenic | 40.0% | |
!! | GAGGGTATTTCAGTACATGA+GGG | + | chr3_4:41195396-41195415 | Msa0500660:CDS | 40.0% |
TGGCAACTTAAGCAAAGGAA+AGG | - | chr3_4:41195459-41195478 | None:intergenic | 40.0% | |
! | CCATGGCTTCTTTCTTCTTT+TGG | - | chr3_4:41195479-41195498 | None:intergenic | 40.0% |
CCAAAAGAAGAAAGAAGCCA+TGG | + | chr3_4:41195476-41195495 | Msa0500660:CDS | 40.0% | |
AAGAAGAAAGAAGCCATGGA+AGG | + | chr3_4:41195480-41195499 | Msa0500660:CDS | 40.0% | |
AGAAGAAAGAAGCCATGGAA+GGG | + | chr3_4:41195481-41195500 | Msa0500660:CDS | 40.0% | |
CTTTCAGATAGACGTAGCAA+TGG | + | chr3_4:41195607-41195626 | Msa0500660:intron | 40.0% | |
GTGACTCCCATTATTACATC+GGG | + | chr3_4:41195718-41195737 | Msa0500660:CDS | 40.0% | |
TGACTCCCATTATTACATCG+GGG | + | chr3_4:41195719-41195738 | Msa0500660:CDS | 40.0% | |
GAAACCCCCGATGTAATAAT+GGG | - | chr3_4:41195727-41195746 | None:intergenic | 40.0% | |
AGAAACCCCCGATGTAATAA+TGG | - | chr3_4:41195728-41195747 | None:intergenic | 40.0% | |
AGTCTCCTGTTATGAAGCAT+TGG | - | chr3_4:41195807-41195826 | None:intergenic | 40.0% | |
GTTAGAGGATTTCTGTGACT+TGG | + | chr3_4:41195841-41195860 | Msa0500660:three_prime_UTR | 40.0% | |
CATCTGTTTGATCCATAGTC+AGG | + | chr3_4:41196138-41196157 | Msa0500660:three_prime_UTR | 40.0% | |
ACTCTTGTAGAAATAACCCC+AGG | - | chr3_4:41196172-41196191 | None:intergenic | 40.0% | |
ACTTGCATCGTAGAGAGAGA+TGG | - | chr3_4:41191253-41191272 | None:intergenic | 45.0% | |
AGATGGAAGAAAACGCGATC+AGG | - | chr3_4:41191326-41191345 | None:intergenic | 45.0% | |
ACAAAGCAATCTCTTGCGTG+AGG | + | chr3_4:41191464-41191483 | Msa0500660:intron | 45.0% | |
TTGAGGGAACAATGTCTGGT+CGG | + | chr3_4:41191520-41191539 | Msa0500660:CDS | 45.0% | |
ACATCATTCGGTTCCCCTTT+CGG | + | chr3_4:41191548-41191567 | Msa0500660:CDS | 45.0% | |
!!! | AGCACTGACGACACTTTTGA+TGG | + | chr3_4:41191804-41191823 | Msa0500660:intron | 45.0% |
GTAATCATGTGTGTCCGTGT+TGG | - | chr3_4:41191859-41191878 | None:intergenic | 45.0% | |
GTTTGGACTGACGATGAGTT+TGG | - | chr3_4:41192207-41192226 | None:intergenic | 45.0% | |
CAAGCCCATTATTGAGCTAC+GGG | + | chr3_4:41192226-41192245 | Msa0500660:intron | 45.0% | |
!!! | CTACGGGCGACCTTTTTTTT+TGG | + | chr3_4:41192242-41192261 | Msa0500660:intron | 45.0% |
ATACACGGAGGAACATATCG+CGG | + | chr3_4:41192370-41192389 | Msa0500660:intron | 45.0% | |
!! | AAACCATTGCTTTGAGGGTG+GGG | - | chr3_4:41192432-41192451 | None:intergenic | 45.0% |
!! | CAAAACCATTGCTTTGAGGG+TGG | - | chr3_4:41192434-41192453 | None:intergenic | 45.0% |
! | CAGCTATTTGACGGACACAA+TGG | + | chr3_4:41192611-41192630 | Msa0500660:intron | 45.0% |
TGCTGCTGCAATTTATGCCA+AGG | + | chr3_4:41192637-41192656 | Msa0500660:CDS | 45.0% | |
TCTGTTGAGATCAGGAGGAA+TGG | - | chr3_4:41192690-41192709 | None:intergenic | 45.0% | |
TCATCTCTGTTGAGATCAGG+AGG | - | chr3_4:41192695-41192714 | None:intergenic | 45.0% | |
CACTCATCTCTGTTGAGATC+AGG | - | chr3_4:41192698-41192717 | None:intergenic | 45.0% | |
CTGATCTCAACAGAGATGAG+TGG | + | chr3_4:41192696-41192715 | Msa0500660:CDS | 45.0% | |
GTGTAGCAGTGTACCAAAAG+AGG | - | chr3_4:41193019-41193038 | None:intergenic | 45.0% | |
AGAATCATCAGTCATGGCTC+AGG | - | chr3_4:41193278-41193297 | None:intergenic | 45.0% | |
! | ATACTTGAACCTTCTGAGGG+CGG | + | chr3_4:41193464-41193483 | Msa0500660:CDS | 45.0% |
! | GAAGTTGGTCGGCTAAATAC+AGG | + | chr3_4:41193656-41193675 | Msa0500660:CDS | 45.0% |
TTGTGTCTCTCTCGATCCAT+TGG | + | chr3_4:41194210-41194229 | Msa0500660:CDS | 45.0% | |
! | CTCTCGATCCATTGGTGATA+TGG | + | chr3_4:41194218-41194237 | Msa0500660:CDS | 45.0% |
ATACAGCTTTCCAATGCTGG+AGG | + | chr3_4:41194760-41194779 | Msa0500660:intron | 45.0% | |
AACAAGTCTTCCTCCAGCAT+TGG | - | chr3_4:41194773-41194792 | None:intergenic | 45.0% | |
! | TTATCAGCAGTGATGGAGTC+TGG | + | chr3_4:41194791-41194810 | Msa0500660:CDS | 45.0% |
! | TATCAGCAGTGATGGAGTCT+GGG | + | chr3_4:41194792-41194811 | Msa0500660:CDS | 45.0% |
GGATGCTCTAACTGCAGAAA+TGG | + | chr3_4:41194813-41194832 | Msa0500660:CDS | 45.0% | |
ATGGTCCTTGATTGTTGTCG+TGG | + | chr3_4:41194832-41194851 | Msa0500660:CDS | 45.0% | |
ACATGCCACGACAACAATCA+AGG | - | chr3_4:41194840-41194859 | None:intergenic | 45.0% | |
TGATTGTTGTCGTGGCATGT+CGG | + | chr3_4:41194840-41194859 | Msa0500660:CDS | 45.0% | |
AGAAGTAGGTGGTTTCTCCT+GGG | - | chr3_4:41195065-41195084 | None:intergenic | 45.0% | |
ACGTTGAGCCAGATATGGTA+CGG | + | chr3_4:41195176-41195195 | Msa0500660:CDS | 45.0% | |
TATGGTACGGGAACTATACG+AGG | + | chr3_4:41195189-41195208 | Msa0500660:CDS | 45.0% | |
GATCTGCCTTGCTTTCAGAA+AGG | + | chr3_4:41195215-41195234 | Msa0500660:CDS | 45.0% | |
GCCTTGCTTTCAGAAAGGTT+TGG | + | chr3_4:41195220-41195239 | Msa0500660:intron | 45.0% | |
! | TCTAGTTGGCTCTCTTGACA+TGG | + | chr3_4:41195271-41195290 | Msa0500660:intron | 45.0% |
AGTAGAGATTAAACCTGGGG+AGG | + | chr3_4:41195377-41195396 | Msa0500660:CDS | 45.0% | |
GTAGAGATTAAACCTGGGGA+GGG | + | chr3_4:41195378-41195397 | Msa0500660:CDS | 45.0% | |
!! | GGAGGGTATTTCAGTACATG+AGG | + | chr3_4:41195395-41195414 | Msa0500660:CDS | 45.0% |
AAGAAGCCATGGAAGGGAAA+CGG | + | chr3_4:41195487-41195506 | Msa0500660:CDS | 45.0% | |
TGATATCCGTTTCCCTTCCA+TGG | - | chr3_4:41195496-41195515 | None:intergenic | 45.0% | |
ATGGAAGGGAAACGGATATC+AGG | + | chr3_4:41195495-41195514 | Msa0500660:CDS | 45.0% | |
GACTCCCATTATTACATCGG+GGG | + | chr3_4:41195720-41195739 | Msa0500660:CDS | 45.0% | |
ATCGGGGGTTTCTCAGAATA+AGG | + | chr3_4:41195735-41195754 | Msa0500660:CDS | 45.0% | |
GAATATGAACCACCCAAGAG+TGG | + | chr3_4:41195871-41195890 | Msa0500660:three_prime_UTR | 45.0% | |
TGGAATGCTCAACAGGATGT+CGG | + | chr3_4:41195914-41195933 | Msa0500660:three_prime_UTR | 45.0% | |
!!! | TTTTATTTTACTTATTATTT+TGG | + | chr3_4:41192012-41192031 | Msa0500660:intron | 5.0% |
TGAGGGAACAATGTCTGGTC+GGG | + | chr3_4:41191521-41191540 | Msa0500660:CDS | 50.0% | |
TGGTCGGGGAGAACATCATT+CGG | + | chr3_4:41191536-41191555 | Msa0500660:CDS | 50.0% | |
! | ACGCTTCAACAGCACCGAAA+GGG | - | chr3_4:41191565-41191584 | None:intergenic | 50.0% |
GTGTCTGGGTGGTGTTTCAT+AGG | + | chr3_4:41191928-41191947 | Msa0500660:intron | 50.0% | |
GTCGCCCGTAGCTCAATAAT+GGG | - | chr3_4:41192233-41192252 | None:intergenic | 50.0% | |
TCGCGGACGTATTTGTGCAA+TGG | + | chr3_4:41192387-41192406 | Msa0500660:intron | 50.0% | |
GTGCAATGGCAAGTACCTTC+TGG | + | chr3_4:41192401-41192420 | Msa0500660:intron | 50.0% | |
! | TACTTGAACCTTCTGAGGGC+GGG | + | chr3_4:41193465-41193484 | Msa0500660:CDS | 50.0% |
CTTGTCAGCAGATCATCGAC+TGG | + | chr3_4:41193496-41193515 | Msa0500660:CDS | 50.0% | |
ACTTCTAGTGGGGGTGAAGT+TGG | + | chr3_4:41193641-41193660 | Msa0500660:CDS | 50.0% | |
GTTGGTCGGCTAAATACAGG+CGG | + | chr3_4:41193659-41193678 | Msa0500660:CDS | 50.0% | |
! | AGGTTGGTCCGTTGAGATGT+TGG | + | chr3_4:41194178-41194197 | Msa0500660:intron | 50.0% |
AGATGACACAACCTGCATCG+TGG | + | chr3_4:41195027-41195046 | Msa0500660:CDS | 50.0% | |
CGTGGTCGATATATTACCCC+AGG | + | chr3_4:41195045-41195064 | Msa0500660:CDS | 50.0% | |
GAAGTAGGTGGTTTCTCCTG+GGG | - | chr3_4:41195064-41195083 | None:intergenic | 50.0% | |
CAGAAGTAGGTGGTTTCTCC+TGG | - | chr3_4:41195066-41195085 | None:intergenic | 50.0% | |
! | TGTGTTGGTGCAGAAGTAGG+TGG | - | chr3_4:41195076-41195095 | None:intergenic | 50.0% |
CGTTGAGCCAGATATGGTAC+GGG | + | chr3_4:41195177-41195196 | Msa0500660:CDS | 50.0% | |
GTACGGGAACTATACGAGGA+AGG | + | chr3_4:41195193-41195212 | Msa0500660:CDS | 50.0% | |
TGTACTGAAATACCCTCCCC+AGG | - | chr3_4:41195393-41195412 | None:intergenic | 50.0% | |
CAAAGGAAAGGTCCATCCCA+GGG | - | chr3_4:41195447-41195466 | None:intergenic | 50.0% | |
CAGAACCTTTCGCCACTCTT+GGG | - | chr3_4:41195886-41195905 | None:intergenic | 50.0% | |
ACAGAACCTTTCGCCACTCT+TGG | - | chr3_4:41195887-41195906 | None:intergenic | 50.0% | |
AATGCTCAACAGGATGTCGG+AGG | + | chr3_4:41195917-41195936 | Msa0500660:three_prime_UTR | 50.0% | |
GAGGGAACAATGTCTGGTCG+GGG | + | chr3_4:41191522-41191541 | Msa0500660:CDS | 55.0% | |
! | CGCTTCAACAGCACCGAAAG+GGG | - | chr3_4:41191564-41191583 | None:intergenic | 55.0% |
! | CACGCTTCAACAGCACCGAA+AGG | - | chr3_4:41191566-41191585 | None:intergenic | 55.0% |
CGAGTTGTCAGGGTTGTGTC+TGG | + | chr3_4:41191906-41191925 | Msa0500660:intron | 55.0% | |
TCAGGGTTGTGTCTGGTGTC+TGG | + | chr3_4:41191913-41191932 | Msa0500660:intron | 55.0% | |
CAGGGTTGTGTCTGGTGTCT+GGG | + | chr3_4:41191914-41191933 | Msa0500660:intron | 55.0% | |
GGTCGCCCGTAGCTCAATAA+TGG | - | chr3_4:41192234-41192253 | None:intergenic | 55.0% | |
!! | ATTGCTTTGAGGGTGGGGTG+GGG | - | chr3_4:41192427-41192446 | None:intergenic | 55.0% |
!! | CATTGCTTTGAGGGTGGGGT+GGG | - | chr3_4:41192428-41192447 | None:intergenic | 55.0% |
! | TTGCCAAGGGCTTTGGTTGC+TGG | + | chr3_4:41192728-41192747 | Msa0500660:CDS | 55.0% |
AAGCCAGCAACCAAAGCCCT+TGG | - | chr3_4:41192734-41192753 | None:intergenic | 55.0% | |
TGGTACACTGCTACACTCCC+TGG | + | chr3_4:41193023-41193042 | Msa0500660:intron | 55.0% | |
TAATGAAGCCCGCCCTCAGA+AGG | - | chr3_4:41193476-41193495 | None:intergenic | 55.0% | |
AGGGTGCGCATCACTTCTAG+TGG | + | chr3_4:41193629-41193648 | Msa0500660:CDS | 55.0% | |
GGGTGCGCATCACTTCTAGT+GGG | + | chr3_4:41193630-41193649 | Msa0500660:CDS | 55.0% | |
GGTGCGCATCACTTCTAGTG+GGG | + | chr3_4:41193631-41193650 | Msa0500660:CDS | 55.0% | |
GTGCGCATCACTTCTAGTGG+GGG | + | chr3_4:41193632-41193651 | Msa0500660:CDS | 55.0% | |
! | CTAGTGGGGGTGAAGTTGGT+CGG | + | chr3_4:41193645-41193664 | Msa0500660:CDS | 55.0% |
! | AAATACAGGCGGAGGTGCAG+AGG | + | chr3_4:41193670-41193689 | Msa0500660:CDS | 55.0% |
CCACCAGGCCAACATCTCAA+CGG | - | chr3_4:41194189-41194208 | None:intergenic | 55.0% | |
TTGTTGTCGTGGCATGTCGG+CGG | + | chr3_4:41194843-41194862 | Msa0500660:CDS | 55.0% | |
! | ATGAGGGTGCGCCTAACGTA+AGG | + | chr3_4:41195412-41195431 | Msa0500660:CDS | 55.0% |
GGACGCGGTTTCCTTACGTT+AGG | - | chr3_4:41195426-41195445 | None:intergenic | 55.0% | |
GCAAAGGAAAGGTCCATCCC+AGG | - | chr3_4:41195448-41195467 | None:intergenic | 55.0% | |
AACCACCCAAGAGTGGCGAA+AGG | + | chr3_4:41195878-41195897 | Msa0500660:three_prime_UTR | 55.0% | |
AACCTTTCGCCACTCTTGGG+TGG | - | chr3_4:41195883-41195902 | None:intergenic | 55.0% | |
TGCGCATACAAGTGGCAGTG+TGG | - | chr3_4:41196196-41196215 | None:intergenic | 55.0% | |
GGTTGTGTCTGGTGTCTGGG+TGG | + | chr3_4:41191917-41191936 | Msa0500660:intron | 60.0% | |
!! | CCATTGCTTTGAGGGTGGGG+TGG | - | chr3_4:41192429-41192448 | None:intergenic | 60.0% |
CCACCCCACCCTCAAAGCAA+TGG | + | chr3_4:41192426-41192445 | Msa0500660:intron | 60.0% | |
AGTGGGTAGCAGCGTTGCCA+AGG | + | chr3_4:41192714-41192733 | Msa0500660:CDS | 60.0% | |
GTGGGTAGCAGCGTTGCCAA+GGG | + | chr3_4:41192715-41192734 | Msa0500660:CDS | 60.0% | |
AGCAGCGTTGCCAAGGGCTT+TGG | + | chr3_4:41192721-41192740 | Msa0500660:CDS | 60.0% | |
GGTCGGCTAAATACAGGCGG+AGG | + | chr3_4:41193662-41193681 | Msa0500660:CDS | 60.0% | |
GGTCCGTTGAGATGTTGGCC+TGG | + | chr3_4:41194183-41194202 | Msa0500660:CDS | 60.0% | |
! | CCGTTGAGATGTTGGCCTGG+TGG | + | chr3_4:41194186-41194205 | Msa0500660:CDS | 60.0% |
CGAGAGAGACACAAGCCACC+AGG | - | chr3_4:41194204-41194223 | None:intergenic | 60.0% | |
ACGTAAGGAAACCGCGTCCC+TGG | + | chr3_4:41195427-41195446 | Msa0500660:CDS | 60.0% | |
CGTAAGGAAACCGCGTCCCT+GGG | + | chr3_4:41195428-41195447 | Msa0500660:CDS | 60.0% | |
AAAGGTCCATCCCAGGGACG+CGG | - | chr3_4:41195441-41195460 | None:intergenic | 60.0% | |
GCCACTTGTATGCGCAGTGC+AGG | + | chr3_4:41196200-41196219 | Msa0500660:three_prime_UTR | 60.0% | |
GCCTGCACTGCGCATACAAG+TGG | - | chr3_4:41196204-41196223 | None:intergenic | 60.0% | |
TTGTCGTGGCATGTCGGCGG+AGG | + | chr3_4:41194846-41194865 | Msa0500660:CDS | 65.0% | |
AGGAAACCGCGTCCCTGGGA+TGG | + | chr3_4:41195432-41195451 | Msa0500660:CDS | 65.0% | |
GAGGGTGGGGTGGGGCCAGA+AGG | - | chr3_4:41192419-41192438 | None:intergenic | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_4 | gene | 41191217 | 41196281 | 41191217 | ID=Msa0500660;Name=Msa0500660 |
chr3_4 | mRNA | 41191217 | 41196281 | 41191217 | ID=Msa0500660-mRNA-1;Parent=Msa0500660;Name=Msa0500660-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0.88|0.8|1|0.88|0.9|10|513|464 |
chr3_4 | exon | 41191217 | 41191223 | 41191217 | ID=Msa0500660-mRNA-1:exon:8561;Parent=Msa0500660-mRNA-1 |
chr3_4 | exon | 41191499 | 41191734 | 41191499 | ID=Msa0500660-mRNA-1:exon:8562;Parent=Msa0500660-mRNA-1 |
chr3_4 | exon | 41192614 | 41192785 | 41192614 | ID=Msa0500660-mRNA-1:exon:8563;Parent=Msa0500660-mRNA-1 |
chr3_4 | exon | 41193381 | 41193534 | 41193381 | ID=Msa0500660-mRNA-1:exon:8564;Parent=Msa0500660-mRNA-1 |
chr3_4 | exon | 41193628 | 41193691 | 41193628 | ID=Msa0500660-mRNA-1:exon:8565;Parent=Msa0500660-mRNA-1 |
chr3_4 | exon | 41194180 | 41194287 | 41194180 | ID=Msa0500660-mRNA-1:exon:8566;Parent=Msa0500660-mRNA-1 |
chr3_4 | exon | 41194766 | 41194891 | 41194766 | ID=Msa0500660-mRNA-1:exon:8567;Parent=Msa0500660-mRNA-1 |
chr3_4 | exon | 41195001 | 41195236 | 41195001 | ID=Msa0500660-mRNA-1:exon:8568;Parent=Msa0500660-mRNA-1 |
chr3_4 | exon | 41195317 | 41195516 | 41195317 | ID=Msa0500660-mRNA-1:exon:8569;Parent=Msa0500660-mRNA-1 |
chr3_4 | exon | 41195677 | 41196281 | 41195677 | ID=Msa0500660-mRNA-1:exon:8570;Parent=Msa0500660-mRNA-1 |
chr3_4 | CDS | 41191217 | 41191223 | 41191217 | ID=Msa0500660-mRNA-1:cds;Parent=Msa0500660-mRNA-1 |
chr3_4 | CDS | 41191499 | 41191734 | 41191499 | ID=Msa0500660-mRNA-1:cds;Parent=Msa0500660-mRNA-1 |
chr3_4 | CDS | 41192614 | 41192785 | 41192614 | ID=Msa0500660-mRNA-1:cds;Parent=Msa0500660-mRNA-1 |
chr3_4 | CDS | 41193381 | 41193534 | 41193381 | ID=Msa0500660-mRNA-1:cds;Parent=Msa0500660-mRNA-1 |
chr3_4 | CDS | 41193628 | 41193691 | 41193628 | ID=Msa0500660-mRNA-1:cds;Parent=Msa0500660-mRNA-1 |
chr3_4 | CDS | 41194180 | 41194287 | 41194180 | ID=Msa0500660-mRNA-1:cds;Parent=Msa0500660-mRNA-1 |
chr3_4 | CDS | 41194766 | 41194891 | 41194766 | ID=Msa0500660-mRNA-1:cds;Parent=Msa0500660-mRNA-1 |
chr3_4 | CDS | 41195001 | 41195236 | 41195001 | ID=Msa0500660-mRNA-1:cds;Parent=Msa0500660-mRNA-1 |
chr3_4 | CDS | 41195317 | 41195516 | 41195317 | ID=Msa0500660-mRNA-1:cds;Parent=Msa0500660-mRNA-1 |
chr3_4 | CDS | 41195677 | 41195768 | 41195677 | ID=Msa0500660-mRNA-1:cds;Parent=Msa0500660-mRNA-1 |
chr3_4 | three_prime_UTR | 41195769 | 41196281 | 41195769 | ID=Msa0500660-mRNA-1:three_prime_utr;Parent=Msa0500660-mRNA-1 |
Gene Sequence |
Protein sequence |