Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0539390 | XP_003605528.1 | 96.517 | 201 | 3 | 2 | 1 | 199 | 1 | 199 | 1.48e-135 | 387 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0539390 | sp|Q5P316|RL18_AROAE | 31.818 | 110 | 73 | 2 | 90 | 198 | 9 | 117 | 1.45e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0539390 | G7JN88 | 96.517 | 201 | 3 | 2 | 1 | 199 | 1 | 199 | 7.07e-136 | 387 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0044320 | Msa0539390 | 0.801707 | 7.931247e-49 | -8.615850e-47 |
| Msa0392120 | Msa0539390 | 0.833196 | 6.128397e-56 | -8.615850e-47 |
| Msa0404900 | Msa0539390 | 0.805773 | 1.135452e-49 | -8.615850e-47 |
| Msa0470080 | Msa0539390 | 0.819988 | 8.695005e-53 | -8.615850e-47 |
| Msa0487860 | Msa0539390 | 0.807415 | 5.112650e-50 | -8.615850e-47 |
| Msa0539390 | Msa0673620 | 0.804622 | 1.977154e-49 | -8.615850e-47 |
| Msa0539390 | Msa1150130 | 0.806974 | 6.339047e-50 | -8.615850e-47 |
| Msa0539390 | Msa1409530 | 0.800168 | 1.635432e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0539390 | MtrunA17_Chr4g0014331 | 96.517 | 201 | 3 | 2 | 1 | 199 | 1 | 199 | 1.36e-139 | 387 |
| Msa0539390 | MtrunA17_Chr3g0081601 | 45.763 | 118 | 63 | 1 | 80 | 196 | 63 | 180 | 5.83e-31 | 111 |
| Msa0539390 | MtrunA17_Chr5g0394471 | 38.739 | 111 | 68 | 0 | 86 | 196 | 226 | 336 | 1.45e-21 | 90.5 |
| Msa0539390 | MtrunA17_Chr1g0211791 | 32.990 | 97 | 65 | 0 | 100 | 196 | 15 | 111 | 4.60e-16 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0539390 | AT3G20230.1 | 65.854 | 164 | 50 | 2 | 36 | 199 | 29 | 186 | 2.23e-76 | 228 |
| Msa0539390 | AT1G08845.1 | 41.322 | 121 | 71 | 0 | 76 | 196 | 62 | 182 | 3.16e-29 | 107 |
| Msa0539390 | AT1G08845.3 | 41.322 | 121 | 71 | 0 | 76 | 196 | 62 | 182 | 3.16e-29 | 107 |
| Msa0539390 | AT1G08845.2 | 41.322 | 121 | 71 | 0 | 76 | 196 | 107 | 227 | 3.85e-29 | 108 |
| Msa0539390 | AT5G27820.1 | 34.021 | 97 | 64 | 0 | 100 | 196 | 15 | 111 | 9.85e-18 | 75.9 |
| Msa0539390 | AT3G22450.1 | 39.655 | 116 | 69 | 1 | 82 | 196 | 175 | 290 | 7.30e-15 | 72.0 |
| Msa0539390 | AT3G22450.2 | 39.655 | 116 | 69 | 1 | 82 | 196 | 175 | 290 | 7.30e-15 | 72.0 |
Find 47 sgRNAs with CRISPR-Local
Find 197 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTGAAGCTTGTAGAGTAAT+TGG | 0.243088 | 4_1:+20295787 | Msa0539390:CDS |
| CGCTTCCATGATTTCCTGCT+GGG | 0.263722 | 4_1:-20295607 | None:intergenic |
| AACACCGGCACCGTATATTT+AGG | 0.301634 | 4_1:+20296080 | Msa0539390:three_prime_UTR |
| TCGATCCTTTCATTCTTTCT+CGG | 0.304010 | 4_1:-20295865 | None:intergenic |
| CCGCTTCCATGATTTCCTGC+TGG | 0.319690 | 4_1:-20295608 | None:intergenic |
| CCAATTACTCTACAAGCTTC+AGG | 0.324712 | 4_1:-20295787 | None:intergenic |
| AAGAGAGTTTCGAAGATCTT+TGG | 0.330634 | 4_1:-20295749 | None:intergenic |
| CTTGATACTGTTAAAGAAAA+CGG | 0.377766 | 4_1:+20295907 | Msa0539390:CDS |
| TTTGGGATTGTTGGAGTTTG+AGG | 0.385486 | 4_1:-20292841 | None:intergenic |
| TTGGGATTGTTGGAGTTTGA+GGG | 0.396933 | 4_1:-20292840 | None:intergenic |
| TTGATACTGTTAAAGAAAAC+GGG | 0.400365 | 4_1:+20295908 | Msa0539390:CDS |
| CCAAACAGAGCCTAAATATA+CGG | 0.401230 | 4_1:-20296090 | None:intergenic |
| CCGTATATTTAGGCTCTGTT+TGG | 0.423611 | 4_1:+20296090 | Msa0539390:three_prime_UTR |
| TCGAAGATCTTTGGCGTTTG+TGG | 0.436613 | 4_1:-20295740 | None:intergenic |
| AGAACGTACTTTGGGATTGT+TGG | 0.444519 | 4_1:-20292850 | None:intergenic |
| AGAAACCCAGCAGGAAATCA+TGG | 0.462560 | 4_1:+20295602 | Msa0539390:CDS |
| GATAGAGATGATGGGTAAAG+AGG | 0.466113 | 4_1:-20292793 | None:intergenic |
| GGAGTTTGAGGGAGAGAGAG+TGG | 0.482807 | 4_1:-20292829 | None:intergenic |
| TGAGGTTGAGATAGAGATGA+TGG | 0.486992 | 4_1:-20292802 | None:intergenic |
| ATAGAGATGATGGGTAAAGA+GGG | 0.490069 | 4_1:-20292792 | None:intergenic |
| GTACATTCATTCGAGCTGCT+TGG | 0.492460 | 4_1:+20295551 | Msa0539390:CDS |
| GGGAGAGAGAGTGGTTGTTG+AGG | 0.496367 | 4_1:-20292820 | None:intergenic |
| GTGAGAAGAAGAAGAAGGAG+TGG | 0.504912 | 4_1:+20292635 | Msa0539390:five_prime_UTR |
| TGATAACGAGTTGTGTTGGT+TGG | 0.525995 | 4_1:+20292661 | Msa0539390:CDS |
| AAGTAGTGAGAAGAAGAAGA+AGG | 0.541357 | 4_1:+20292630 | Msa0539390:five_prime_UTR |
| GAAAGGATCGAAGGTAGACT+AGG | 0.543538 | 4_1:+20295877 | Msa0539390:CDS |
| GATAACGAGTTGTGTTGGTT+GGG | 0.544905 | 4_1:+20292662 | Msa0539390:CDS |
| CTTGAAAATGAAAGCGACGA+TGG | 0.550299 | 4_1:-20292762 | None:intergenic |
| TCTGTTGCGATAATAAGCTT+CGG | 0.552339 | 4_1:+20292712 | Msa0539390:CDS |
| AGCGACGATGGAGACGAAGA+AGG | 0.554025 | 4_1:-20292750 | None:intergenic |
| ATTCACACGCATTTGAACAC+CGG | 0.559198 | 4_1:+20296065 | Msa0539390:three_prime_UTR |
| TGCTCTTCTCTAAACAGCAA+AGG | 0.566192 | 4_1:+20292607 | Msa0539390:five_prime_UTR |
| CCAGCAGGAAATCATGGAAG+CGG | 0.573597 | 4_1:+20295608 | Msa0539390:CDS |
| TGCGTGTGAATAAAACATCA+AGG | 0.588101 | 4_1:-20296053 | None:intergenic |
| GCTTATTGCAGAGCGATCAA+AGG | 0.597674 | 4_1:+20295813 | Msa0539390:CDS |
| ACGAACCGAGAAAGAATGAA+AGG | 0.603027 | 4_1:+20295860 | Msa0539390:CDS |
| AGAGCCTAAATATACGGTGC+CGG | 0.612937 | 4_1:-20296084 | None:intergenic |
| AAGCTTGTAGAGTAATTGGA+AGG | 0.614586 | 4_1:+20295791 | Msa0539390:CDS |
| GGAAGCTGATGTATATGCAA+TGG | 0.615199 | 4_1:+20295834 | Msa0539390:CDS |
| AGAAAGAATGAAAGGATCGA+AGG | 0.615782 | 4_1:+20295868 | Msa0539390:CDS |
| AAGCTGAAAAGAAACCCAGC+AGG | 0.616349 | 4_1:+20295593 | Msa0539390:CDS |
| GAAATGATAACGAGTTGTGT+TGG | 0.616458 | 4_1:+20292657 | Msa0539390:exon |
| GCTTGGACTCGAAGATCTCG+AGG | 0.620097 | 4_1:+20295568 | Msa0539390:CDS |
| CAGAGCGATGCTGATGCTGA+AGG | 0.646208 | 4_1:-20292693 | None:intergenic |
| GAGGTTGAGATAGAGATGAT+GGG | 0.647196 | 4_1:-20292801 | None:intergenic |
| CACGCGAAAGTGACACATCG+TGG | 0.651769 | 4_1:+20295691 | Msa0539390:CDS |
| GCTTCAGGATCTATCAACGA+TGG | 0.653754 | 4_1:-20295772 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATCAGTTATTATAAATAT+AGG | - | chr4_1:20294443-20294462 | None:intergenic | 10.0% |
| !! | ATATTTGATATAAAGATTAT+GGG | + | chr4_1:20294594-20294613 | Msa0539390:intron | 10.0% |
| !! | TAATTTAAACTAACTTTATA+TGG | + | chr4_1:20295445-20295464 | Msa0539390:intron | 10.0% |
| !!! | AGTTTGACAATATTTAATTT+TGG | - | chr4_1:20293307-20293326 | None:intergenic | 15.0% |
| !!! | TTTTTTGCAAAAGAAATAAT+TGG | + | chr4_1:20294513-20294532 | Msa0539390:intron | 15.0% |
| !! | GATATTTGATATAAAGATTA+TGG | + | chr4_1:20294593-20294612 | Msa0539390:intron | 15.0% |
| !! | TTTAAACAGAAATAAGTATT+TGG | + | chr4_1:20294664-20294683 | Msa0539390:intron | 15.0% |
| !!! | AAGTTTATTTTATCTTATGA+AGG | + | chr4_1:20294765-20294784 | Msa0539390:intron | 15.0% |
| !!! | TTCAATAATCTAATTTTTCT+TGG | + | chr4_1:20294900-20294919 | Msa0539390:intron | 15.0% |
| !!! | AAAATAAATAATTTGCACTT+TGG | + | chr4_1:20295114-20295133 | Msa0539390:intron | 15.0% |
| !! | AACACTTGATATATATATTA+TGG | + | chr4_1:20295202-20295221 | Msa0539390:intron | 15.0% |
| !! | AAGAAAATGTCTAATAAAAA+CGG | - | chr4_1:20295655-20295674 | None:intergenic | 15.0% |
| !! | AATTGAAAAAAAGAAGAGAT+GGG | - | chr4_1:20292886-20292905 | None:intergenic | 20.0% |
| !! | TAATTGAAAAAAAGAAGAGA+TGG | - | chr4_1:20292887-20292906 | None:intergenic | 20.0% |
| !!! | AAAATTTGTTTATCCAAACA+GGG | - | chr4_1:20293235-20293254 | None:intergenic | 20.0% |
| !!! | TAAAATTTGTTTATCCAAAC+AGG | - | chr4_1:20293236-20293255 | None:intergenic | 20.0% |
| !!! | AAATTTTATTTTACAGCTTC+TGG | + | chr4_1:20293248-20293267 | Msa0539390:intron | 20.0% |
| !!! | AAATATTGTCAAACTGTTTT+AGG | + | chr4_1:20293312-20293331 | Msa0539390:intron | 20.0% |
| !!! | AATATTGTCAAACTGTTTTA+GGG | + | chr4_1:20293313-20293332 | Msa0539390:intron | 20.0% |
| !!! | ATAACTGATTATTTTACCTT+TGG | + | chr4_1:20294452-20294471 | Msa0539390:intron | 20.0% |
| !! | AAGTTATTAGTTACAATACT+TGG | + | chr4_1:20294788-20294807 | Msa0539390:intron | 20.0% |
| !! | AGTTATTAGTTACAATACTT+GGG | + | chr4_1:20294789-20294808 | Msa0539390:intron | 20.0% |
| !! | TGAAAACAGTACTTATTATT+AGG | - | chr4_1:20294884-20294903 | None:intergenic | 20.0% |
| !!! | TAAAAGGTTTTTTTATGGAT+TGG | - | chr4_1:20295281-20295300 | None:intergenic | 20.0% |
| !!! | AAGCTTAAAAGGTTTTTTTA+TGG | - | chr4_1:20295286-20295305 | None:intergenic | 20.0% |
| !!! | ACATATTGATTTTACTTATG+AGG | + | chr4_1:20295341-20295360 | Msa0539390:intron | 20.0% |
| !!! | CATATTGATTTTACTTATGA+GGG | + | chr4_1:20295342-20295361 | Msa0539390:intron | 20.0% |
| !!! | TGTGACAAATTTTATTTAAC+TGG | + | chr4_1:20296002-20296021 | Msa0539390:three_prime_UTR | 20.0% |
| ! | TTCAATGTAATTACAAGTGT+CGG | - | chr4_1:20293031-20293050 | None:intergenic | 25.0% |
| ! | TATTATTCATAAGCTTCTCA+AGG | - | chr4_1:20293443-20293462 | None:intergenic | 25.0% |
| ! | TATTGTCCAATGATGTAATT+AGG | - | chr4_1:20293562-20293581 | None:intergenic | 25.0% |
| ! | ATAAGAAGTAAGAGAAATTG+AGG | + | chr4_1:20293579-20293598 | Msa0539390:intron | 25.0% |
| ! | TAAGAAGTAAGAGAAATTGA+GGG | + | chr4_1:20293580-20293599 | Msa0539390:intron | 25.0% |
| ! | CTAATAGTGTTGTCAAATAT+CGG | + | chr4_1:20293928-20293947 | Msa0539390:intron | 25.0% |
| !! | ATGGTGAAATTTGAACATTT+TGG | + | chr4_1:20294565-20294584 | Msa0539390:intron | 25.0% |
| ! | TGATATAAAGATTATGGGTA+TGG | + | chr4_1:20294599-20294618 | Msa0539390:intron | 25.0% |
| !! | GTTTAAAGAAGACAATTTTC+TGG | + | chr4_1:20294726-20294745 | Msa0539390:intron | 25.0% |
| ! | TTATATCACTTCTCATATGT+AGG | + | chr4_1:20294813-20294832 | Msa0539390:intron | 25.0% |
| ! | GAGTTATGTAATTAAGAATC+TGG | - | chr4_1:20294943-20294962 | None:intergenic | 25.0% |
| ! | TTGTTTGTATTTATGAGAAC+TGG | + | chr4_1:20295046-20295065 | Msa0539390:intron | 25.0% |
| !!! | TCGCTTTTCTAGTTTATTAT+TGG | + | chr4_1:20295083-20295102 | Msa0539390:intron | 25.0% |
| ! | TATATATTATGGCACACTTT+AGG | + | chr4_1:20295213-20295232 | Msa0539390:intron | 25.0% |
| !! | AAAAAAACCTTTTAAGCTTG+AGG | + | chr4_1:20295287-20295306 | Msa0539390:intron | 25.0% |
| !! | TTTTACACGAGTACTAATAT+TGG | - | chr4_1:20295423-20295442 | None:intergenic | 25.0% |
| ! | CTTGATACTGTTAAAGAAAA+CGG | + | chr4_1:20295907-20295926 | Msa0539390:CDS | 25.0% |
| ! | TTGATACTGTTAAAGAAAAC+GGG | + | chr4_1:20295908-20295927 | Msa0539390:CDS | 25.0% |
| TACATTGTTACTATGAAGCA+AGG | + | chr4_1:20292953-20292972 | Msa0539390:intron | 30.0% | |
| GTGTTGAAACTATGAGTATA+TGG | + | chr4_1:20293185-20293204 | Msa0539390:intron | 30.0% | |
| ATGAGTATATGGTAGAAATG+TGG | + | chr4_1:20293196-20293215 | Msa0539390:intron | 30.0% | |
| AGCTTATTATTTGCATAAGC+TGG | + | chr4_1:20293469-20293488 | Msa0539390:intron | 30.0% | |
| TGATGTAATTAGGATCTGTT+TGG | - | chr4_1:20293552-20293571 | None:intergenic | 30.0% | |
| ACAGATCCTAATTACATCAT+TGG | + | chr4_1:20293553-20293572 | Msa0539390:intron | 30.0% | |
| ! | TTGTCACTCAAATGAGTTTT+GGG | - | chr4_1:20293701-20293720 | None:intergenic | 30.0% |
| ! | ATTGTCACTCAAATGAGTTT+TGG | - | chr4_1:20293702-20293721 | None:intergenic | 30.0% |
| ATGAATACATACCAGAATCA+TGG | + | chr4_1:20294194-20294213 | Msa0539390:intron | 30.0% | |
| ! | TGACATTGGTTGTTACTATT+AGG | - | chr4_1:20294230-20294249 | None:intergenic | 30.0% |
| TCAATACTCTAACCACATTT+GGG | + | chr4_1:20294247-20294266 | Msa0539390:intron | 30.0% | |
| AGAAGAAAAATGAAGTCCAA+AGG | - | chr4_1:20294471-20294490 | None:intergenic | 30.0% | |
| TGTTCAAATTTCACCATTCA+TGG | - | chr4_1:20294562-20294581 | None:intergenic | 30.0% | |
| TCCAATTTGAACATACTTCT+AGG | + | chr4_1:20294622-20294641 | Msa0539390:intron | 30.0% | |
| CATTTGTGACAATATCATGT+GGG | + | chr4_1:20295004-20295023 | Msa0539390:intron | 30.0% | |
| TATGAGAACTGGTTAATCTT+TGG | + | chr4_1:20295057-20295076 | Msa0539390:intron | 30.0% | |
| !!! | TTGGTCAATTTTTTCTTTCG+TGG | + | chr4_1:20295133-20295152 | Msa0539390:intron | 30.0% |
| TAGAAGTTCTTCAACTGAAA+TGG | + | chr4_1:20295244-20295263 | Msa0539390:intron | 30.0% | |
| AGAAGTTCTTCAACTGAAAT+GGG | + | chr4_1:20295245-20295264 | Msa0539390:intron | 30.0% | |
| TAAACAACCTCAAGCTTAAA+AGG | - | chr4_1:20295297-20295316 | None:intergenic | 30.0% | |
| AAGCAGGCATTATTTAGTAT+TGG | - | chr4_1:20295480-20295499 | None:intergenic | 30.0% | |
| TAATTCAGTTTAACATCTGC+AGG | + | chr4_1:20295528-20295547 | Msa0539390:intron | 30.0% | |
| AATTCAGTTTAACATCTGCA+GGG | + | chr4_1:20295529-20295548 | Msa0539390:intron | 30.0% | |
| ! | CGTTTTCTTTAACAGTATCA+AGG | - | chr4_1:20295909-20295928 | None:intergenic | 30.0% |
| AAGTAGTGAGAAGAAGAAGA+AGG | + | chr4_1:20292630-20292649 | Msa0539390:five_prime_UTR | 35.0% | |
| ! | GAAATGATAACGAGTTGTGT+TGG | + | chr4_1:20292657-20292676 | Msa0539390:exon | 35.0% |
| TCTGTTGCGATAATAAGCTT+CGG | + | chr4_1:20292712-20292731 | Msa0539390:CDS | 35.0% | |
| !! | ATAGAGATGATGGGTAAAGA+GGG | - | chr4_1:20292795-20292814 | None:intergenic | 35.0% |
| CGACACAGCTAATAATTTGA+AGG | - | chr4_1:20293069-20293088 | None:intergenic | 35.0% | |
| AAACTCATTAAGACCCTGTT+TGG | + | chr4_1:20293219-20293238 | Msa0539390:intron | 35.0% | |
| TTTGGATTGTGACACTGTTT+GGG | - | chr4_1:20293534-20293553 | None:intergenic | 35.0% | |
| AGTAAGAGAAATTGAGGGTA+TGG | + | chr4_1:20293585-20293604 | Msa0539390:intron | 35.0% | |
| ! | GTAAGAGAAATTGAGGGTAT+GGG | + | chr4_1:20293586-20293605 | Msa0539390:intron | 35.0% |
| ATGCGTCCTATGAAATTATG+CGG | + | chr4_1:20293668-20293687 | Msa0539390:intron | 35.0% | |
| CCTTTCATTAGTCAGTTTGA+GGG | - | chr4_1:20293862-20293881 | None:intergenic | 35.0% | |
| !! | GATTTTTGGAAAAACTGCCA+TGG | + | chr4_1:20293983-20294002 | Msa0539390:intron | 35.0% |
| AAAGCCAAAAATCCGACATA+TGG | - | chr4_1:20294040-20294059 | None:intergenic | 35.0% | |
| GATAGCAGCTCACAAATTTA+AGG | + | chr4_1:20294111-20294130 | Msa0539390:intron | 35.0% | |
| ! | CTACGAGTAACTACTCATTT+TGG | - | chr4_1:20294138-20294157 | None:intergenic | 35.0% |
| !! | TGTGGTTAGAGTATTGACAT+TGG | - | chr4_1:20294244-20294263 | None:intergenic | 35.0% |
| GTCAATACTCTAACCACATT+TGG | + | chr4_1:20294246-20294265 | Msa0539390:intron | 35.0% | |
| CACTGAACTTCTGATATTAG+AGG | + | chr4_1:20294536-20294555 | Msa0539390:intron | 35.0% | |
| ! | GCCTAGAAGTATGTTCAAAT+TGG | - | chr4_1:20294626-20294645 | None:intergenic | 35.0% |
| ACAGATACCTGAATGATAAC+AGG | + | chr4_1:20294852-20294871 | Msa0539390:intron | 35.0% | |
| ! | TAACTCTGTCTCGTGAATTT+TGG | + | chr4_1:20294957-20294976 | Msa0539390:intron | 35.0% |
| GCATTTGTGACAATATCATG+TGG | + | chr4_1:20295003-20295022 | Msa0539390:intron | 35.0% | |
| AAGAGAGTTTCGAAGATCTT+TGG | - | chr4_1:20295752-20295771 | None:intergenic | 35.0% | |
| AAGCTTGTAGAGTAATTGGA+AGG | + | chr4_1:20295791-20295810 | Msa0539390:CDS | 35.0% | |
| TCGATCCTTTCATTCTTTCT+CGG | - | chr4_1:20295868-20295887 | None:intergenic | 35.0% | |
| AGAAAGAATGAAAGGATCGA+AGG | + | chr4_1:20295868-20295887 | Msa0539390:CDS | 35.0% | |
| TGCGTGTGAATAAAACATCA+AGG | - | chr4_1:20296056-20296075 | None:intergenic | 35.0% | |
| CCAAACAGAGCCTAAATATA+CGG | - | chr4_1:20296093-20296112 | None:intergenic | 35.0% | |
| TGCTCTTCTCTAAACAGCAA+AGG | + | chr4_1:20292607-20292626 | Msa0539390:five_prime_UTR | 40.0% | |
| ! | TGATAACGAGTTGTGTTGGT+TGG | + | chr4_1:20292661-20292680 | Msa0539390:CDS | 40.0% |
| !! | GATAACGAGTTGTGTTGGTT+GGG | + | chr4_1:20292662-20292681 | Msa0539390:CDS | 40.0% |
| CTTGAAAATGAAAGCGACGA+TGG | - | chr4_1:20292765-20292784 | None:intergenic | 40.0% | |
| !! | GATAGAGATGATGGGTAAAG+AGG | - | chr4_1:20292796-20292815 | None:intergenic | 40.0% |
| GAGGTTGAGATAGAGATGAT+GGG | - | chr4_1:20292804-20292823 | None:intergenic | 40.0% | |
| TGAGGTTGAGATAGAGATGA+TGG | - | chr4_1:20292805-20292824 | None:intergenic | 40.0% | |
| TTGGGATTGTTGGAGTTTGA+GGG | - | chr4_1:20292843-20292862 | None:intergenic | 40.0% | |
| ! | TTTGGGATTGTTGGAGTTTG+AGG | - | chr4_1:20292844-20292863 | None:intergenic | 40.0% |
| !! | AGAACGTACTTTGGGATTGT+TGG | - | chr4_1:20292853-20292872 | None:intergenic | 40.0% |
| !! | AGTGGGTTAGAACGTACTTT+GGG | - | chr4_1:20292861-20292880 | None:intergenic | 40.0% |
| AAAAGAAGAGATGGGAGAGT+GGG | - | chr4_1:20292878-20292897 | None:intergenic | 40.0% | |
| AAAAAGAAGAGATGGGAGAG+TGG | - | chr4_1:20292879-20292898 | None:intergenic | 40.0% | |
| TTTGGGAGAACTCATGACAT+GGG | - | chr4_1:20293517-20293536 | None:intergenic | 40.0% | |
| GTTTGGATTGTGACACTGTT+TGG | - | chr4_1:20293535-20293554 | None:intergenic | 40.0% | |
| ACGAGTCCGCATAATTTCAT+AGG | - | chr4_1:20293677-20293696 | None:intergenic | 40.0% | |
| CCCTCAAACTGACTAATGAA+AGG | + | chr4_1:20293859-20293878 | Msa0539390:intron | 40.0% | |
| GCCTTTCATTAGTCAGTTTG+AGG | - | chr4_1:20293863-20293882 | None:intergenic | 40.0% | |
| GTGTTGTCAAATATCGGTCA+TGG | + | chr4_1:20293934-20293953 | Msa0539390:intron | 40.0% | |
| TTGTCAAATATCGGTCATGG+TGG | + | chr4_1:20293937-20293956 | Msa0539390:intron | 40.0% | |
| ! | GGATATCTGTGGCAGATTTT+TGG | + | chr4_1:20293969-20293988 | Msa0539390:intron | 40.0% |
| ATACATACCAGAATCATGGC+AGG | + | chr4_1:20294198-20294217 | Msa0539390:intron | 40.0% | |
| GTAAATACCTGCCATGATTC+TGG | - | chr4_1:20294208-20294227 | None:intergenic | 40.0% | |
| TACTCTAACCACATTTGGGT+TGG | + | chr4_1:20294251-20294270 | Msa0539390:intron | 40.0% | |
| CCTTGTTAAAGATGCTACAC+AGG | - | chr4_1:20294390-20294409 | None:intergenic | 40.0% | |
| CCTGTGTAGCATCTTTAACA+AGG | + | chr4_1:20294387-20294406 | Msa0539390:intron | 40.0% | |
| CTGATATTAGAGGCCATGAA+TGG | + | chr4_1:20294546-20294565 | Msa0539390:intron | 40.0% | |
| GTACAGACCTGTTATCATTC+AGG | - | chr4_1:20294862-20294881 | None:intergenic | 40.0% | |
| GCAACATAAAACACACTGCA+TGG | - | chr4_1:20294985-20295004 | None:intergenic | 40.0% | |
| AACAGTCCCTGTCAGAAATT+CGG | - | chr4_1:20295163-20295182 | None:intergenic | 40.0% | |
| TTTCTGACAGGGACTGTTAA+TGG | + | chr4_1:20295165-20295184 | Msa0539390:intron | 40.0% | |
| CCAATTACTCTACAAGCTTC+AGG | - | chr4_1:20295790-20295809 | None:intergenic | 40.0% | |
| CCTGAAGCTTGTAGAGTAAT+TGG | + | chr4_1:20295787-20295806 | Msa0539390:CDS | 40.0% | |
| GGAAGCTGATGTATATGCAA+TGG | + | chr4_1:20295834-20295853 | Msa0539390:CDS | 40.0% | |
| ACGAACCGAGAAAGAATGAA+AGG | + | chr4_1:20295860-20295879 | Msa0539390:CDS | 40.0% | |
| ATTCACACGCATTTGAACAC+CGG | + | chr4_1:20296065-20296084 | Msa0539390:three_prime_UTR | 40.0% | |
| CCGTATATTTAGGCTCTGTT+TGG | + | chr4_1:20296090-20296109 | Msa0539390:three_prime_UTR | 40.0% | |
| GTGAGAAGAAGAAGAAGGAG+TGG | + | chr4_1:20292635-20292654 | Msa0539390:five_prime_UTR | 45.0% | |
| !! | GAGTGGGTTAGAACGTACTT+TGG | - | chr4_1:20292862-20292881 | None:intergenic | 45.0% |
| TATGAAGCAAGGACACTCCT+TGG | + | chr4_1:20292964-20292983 | Msa0539390:intron | 45.0% | |
| !! | TACAAGTGTCGGTGTTGTGT+CGG | - | chr4_1:20293020-20293039 | None:intergenic | 45.0% |
| TTGGGAGAACTCATGACATG+GGG | - | chr4_1:20293516-20293535 | None:intergenic | 45.0% | |
| GTTTGGGAGAACTCATGACA+TGG | - | chr4_1:20293518-20293537 | None:intergenic | 45.0% | |
| CATCCTTCACAAATTGGCCA+TGG | - | chr4_1:20294003-20294022 | None:intergenic | 45.0% | |
| CATGGCCAATTTGTGAAGGA+TGG | + | chr4_1:20294001-20294020 | Msa0539390:intron | 45.0% | |
| !! | GGTGCCATATGTCGGATTTT+TGG | + | chr4_1:20294033-20294052 | Msa0539390:intron | 45.0% |
| !!! | GGATTTTTGGCTTTCCACCA+TGG | + | chr4_1:20294046-20294065 | Msa0539390:intron | 45.0% |
| TGACAAATTGCAGACCATGG+TGG | - | chr4_1:20294063-20294082 | None:intergenic | 45.0% | |
| CGATGACAAATTGCAGACCA+TGG | - | chr4_1:20294066-20294085 | None:intergenic | 45.0% | |
| CTTGTGTGTTCAATTCTCCC+CGG | + | chr4_1:20294275-20294294 | Msa0539390:intron | 45.0% | |
| !! | GCCAATTTTGGTGGGCAATT+TGG | + | chr4_1:20294299-20294318 | Msa0539390:intron | 45.0% |
| GCCAAATTGCCCACCAAAAT+TGG | - | chr4_1:20294303-20294322 | None:intergenic | 45.0% | |
| CACATTAGCACAAGTGAAGC+AGG | - | chr4_1:20295496-20295515 | None:intergenic | 45.0% | |
| GTACATTCATTCGAGCTGCT+TGG | + | chr4_1:20295551-20295570 | Msa0539390:CDS | 45.0% | |
| AAGCTGAAAAGAAACCCAGC+AGG | + | chr4_1:20295593-20295612 | Msa0539390:CDS | 45.0% | |
| AGAAACCCAGCAGGAAATCA+TGG | + | chr4_1:20295602-20295621 | Msa0539390:CDS | 45.0% | |
| TCGAAGATCTTTGGCGTTTG+TGG | - | chr4_1:20295743-20295762 | None:intergenic | 45.0% | |
| GCTTCAGGATCTATCAACGA+TGG | - | chr4_1:20295775-20295794 | None:intergenic | 45.0% | |
| GCTTATTGCAGAGCGATCAA+AGG | + | chr4_1:20295813-20295832 | Msa0539390:CDS | 45.0% | |
| GAAAGGATCGAAGGTAGACT+AGG | + | chr4_1:20295877-20295896 | Msa0539390:CDS | 45.0% | |
| AACACCGGCACCGTATATTT+AGG | + | chr4_1:20296080-20296099 | Msa0539390:three_prime_UTR | 45.0% | |
| AGAGCCTAAATATACGGTGC+CGG | - | chr4_1:20296087-20296106 | None:intergenic | 45.0% | |
| !! | ATAATAATAATGAATAATTA+AGG | - | chr4_1:20292926-20292945 | None:intergenic | 5.0% |
| GCAAGGACACTCCTTGGATT+AGG | + | chr4_1:20292970-20292989 | Msa0539390:intron | 50.0% | |
| TGTCGTTGTCCGTGTCATGT+CGG | + | chr4_1:20293084-20293103 | Msa0539390:intron | 50.0% | |
| GTGTGGATACCGACATGACA+CGG | - | chr4_1:20293096-20293115 | None:intergenic | 50.0% | |
| CAGTGTACAGTCAGTCAGTG+TGG | - | chr4_1:20293113-20293132 | None:intergenic | 50.0% | |
| ACTCATGACATGGGGCTGTT+TGG | - | chr4_1:20293508-20293527 | None:intergenic | 50.0% | |
| CTGCCATGGCCAATTTGTGA+AGG | + | chr4_1:20293997-20294016 | Msa0539390:intron | 50.0% | |
| CGCTGCCATCCTTCACAAAT+TGG | - | chr4_1:20294009-20294028 | None:intergenic | 50.0% | |
| ACACAAGGCCAACCCAAATG+TGG | - | chr4_1:20294262-20294281 | None:intergenic | 50.0% | |
| CGGGGAGAATTGAACACACA+AGG | - | chr4_1:20294277-20294296 | None:intergenic | 50.0% | |
| !! | ATTCTCCCCGGTGCCAATTT+TGG | + | chr4_1:20294287-20294306 | Msa0539390:intron | 50.0% |
| TTGCCCACCAAAATTGGCAC+CGG | - | chr4_1:20294297-20294316 | None:intergenic | 50.0% | |
| TGGCGATCCGAATTTCTGAC+AGG | + | chr4_1:20295153-20295172 | Msa0539390:intron | 50.0% | |
| GGCGATCCGAATTTCTGACA+GGG | + | chr4_1:20295154-20295173 | Msa0539390:intron | 50.0% | |
| CGCTTCCATGATTTCCTGCT+GGG | - | chr4_1:20295610-20295629 | None:intergenic | 50.0% | |
| CCAGCAGGAAATCATGGAAG+CGG | + | chr4_1:20295608-20295627 | Msa0539390:CDS | 50.0% | |
| CAGAGCGATGCTGATGCTGA+AGG | - | chr4_1:20292696-20292715 | None:intergenic | 55.0% | |
| AGCGACGATGGAGACGAAGA+AGG | - | chr4_1:20292753-20292772 | None:intergenic | 55.0% | |
| GGGAGAGAGAGTGGTTGTTG+AGG | - | chr4_1:20292823-20292842 | None:intergenic | 55.0% | |
| GGAGTTTGAGGGAGAGAGAG+TGG | - | chr4_1:20292832-20292851 | None:intergenic | 55.0% | |
| ! | TCCTTGGATTAGGCGTGTCC+CGG | + | chr4_1:20292980-20292999 | Msa0539390:intron | 55.0% |
| ! | TATCGGTCATGGTGGCGCTA+TGG | + | chr4_1:20293945-20293964 | Msa0539390:intron | 55.0% |
| !! | TCCCCGGTGCCAATTTTGGT+GGG | + | chr4_1:20294291-20294310 | Msa0539390:intron | 55.0% |
| TGCCCACCAAAATTGGCACC+GGG | - | chr4_1:20294296-20294315 | None:intergenic | 55.0% | |
| GCTTGGACTCGAAGATCTCG+AGG | + | chr4_1:20295568-20295587 | Msa0539390:CDS | 55.0% | |
| CCGCTTCCATGATTTCCTGC+TGG | - | chr4_1:20295611-20295630 | None:intergenic | 55.0% | |
| CACGCGAAAGTGACACATCG+TGG | + | chr4_1:20295691-20295710 | Msa0539390:CDS | 55.0% | |
| ACCGGGACACGCCTAATCCA+AGG | - | chr4_1:20292984-20293003 | None:intergenic | 60.0% | |
| GATTAGGCGTGTCCCGGTGT+CGG | + | chr4_1:20292986-20293005 | Msa0539390:intron | 60.0% | |
| !! | GGCGCTATGGCGGATATCTG+TGG | + | chr4_1:20293958-20293977 | Msa0539390:intron | 60.0% |
| TGTGAAGGATGGCAGCGCTG+CGG | + | chr4_1:20294012-20294031 | Msa0539390:intron | 60.0% | |
| !! | AGCGCTGCGGTGCCATATGT+CGG | + | chr4_1:20294025-20294044 | Msa0539390:intron | 60.0% |
| !! | CTCCCCGGTGCCAATTTTGG+TGG | + | chr4_1:20294290-20294309 | Msa0539390:intron | 60.0% |
| GCCCACCAAAATTGGCACCG+GGG | - | chr4_1:20294295-20294314 | None:intergenic | 60.0% | |
| TCGGACACGTGTCCGACACC+GGG | - | chr4_1:20293001-20293020 | None:intergenic | 65.0% | |
| GTCGGACACGTGTCCGACAC+CGG | - | chr4_1:20293004-20293023 | None:intergenic | 65.0% | |
| ! | CGGTCATGGTGGCGCTATGG+CGG | + | chr4_1:20293948-20293967 | Msa0539390:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 20292606 | 20296121 | 20292606 | ID=Msa0539390;Name=Msa0539390 |
| chr4_1 | mRNA | 20292606 | 20296121 | 20292606 | ID=Msa0539390-mRNA-1;Parent=Msa0539390;Name=Msa0539390-mRNA-1;_AED=0.00;_eAED=0.00;_QI=54|1|1|1|0|0.5|2|176|199 |
| chr4_1 | exon | 20292606 | 20292863 | 20292606 | ID=Msa0539390-mRNA-1:exon:5808;Parent=Msa0539390-mRNA-1 |
| chr4_1 | exon | 20295550 | 20296121 | 20295550 | ID=Msa0539390-mRNA-1:exon:5809;Parent=Msa0539390-mRNA-1 |
| chr4_1 | five_prime_UTR | 20292606 | 20292659 | 20292606 | ID=Msa0539390-mRNA-1:five_prime_utr;Parent=Msa0539390-mRNA-1 |
| chr4_1 | CDS | 20292660 | 20292863 | 20292660 | ID=Msa0539390-mRNA-1:cds;Parent=Msa0539390-mRNA-1 |
| chr4_1 | CDS | 20295550 | 20295945 | 20295550 | ID=Msa0539390-mRNA-1:cds;Parent=Msa0539390-mRNA-1 |
| chr4_1 | three_prime_UTR | 20295946 | 20296121 | 20295946 | ID=Msa0539390-mRNA-1:three_prime_utr;Parent=Msa0539390-mRNA-1 |
| Gene Sequence |
| Protein sequence |
