AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0404900


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0404900 MtrunA17_Chr3g0095461 99.234 261 2 0 1 261 1 261 0.0 535
Msa0404900 MtrunA17_Chr5g0442381 73.507 268 62 4 2 261 3 269 2.11e-132 375
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0404900 AT1G06680.1 74.717 265 61 2 1 261 1 263 3.81e-140 394
Msa0404900 AT1G06680.2 83.333 180 30 0 82 261 40 219 5.08e-110 317
Msa0404900 AT2G30790.1 80.000 125 25 0 137 261 1 125 3.58e-70 212

Find 91 sgRNAs with CRISPR-Local

Find 179 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGAGACAAGAGGTGGTTTA+AGG 0.210913 3_2:+38167082 Msa0404900:CDS
CTTGGAAAACAAGCCTTCTT+TGG 0.229953 3_2:+38166500 Msa0404900:CDS
TTGCTTGGATTCCACTTTGC+TGG 0.251510 3_2:-38165751 None:intergenic
GAAGAAATCAACCTCGTAAA+TGG 0.255505 3_2:+38167322 Msa0404900:three_prime_UTR
TTCACCAAAGTTCTTAATTT+AGG 0.265359 3_2:-38167150 None:intergenic
TTCGTTGCAGCCAATGTCTT+TGG 0.280236 3_2:+38165667 Msa0404900:intron
TGGAGTTGTAAGAGCATATT+GGG 0.306962 3_2:-38164731 None:intergenic
TCCTGAGGAGTTCCTATCTA+AGG 0.308940 3_2:+38165888 Msa0404900:CDS
CTTTGAATTACATTTAGATA+TGG 0.310025 3_2:-38164602 None:intergenic
ATGGAGTTGTAAGAGCATAT+TGG 0.315427 3_2:-38164732 None:intergenic
AACAATATGGTTTGGTTTGT+TGG 0.330765 3_2:-38164785 None:intergenic
ATTGAACATGTGGTTGGTTT+TGG 0.331888 3_2:-38164564 None:intergenic
TTGGTTTGTTGGTAACAATT+TGG 0.344896 3_2:-38164774 None:intergenic
ATACTTAGACTCTAGCAAAA+TGG 0.377812 3_2:+38164684 Msa0404900:exon
GGGAACTCTCTCTCTTTGCT+TGG 0.385361 3_2:-38165766 None:intergenic
CGTTGAGACAAACTTCTAGA+TGG 0.406600 3_2:-38164751 None:intergenic
AAATTACCTCTGAATCAGTT+TGG 0.412596 3_2:-38166523 None:intergenic
GTTGCCTAAATTAAGAACTT+TGG 0.414675 3_2:+38167146 Msa0404900:exon
GGAGACAAGAGGTGGTTTAA+GGG 0.417477 3_2:+38167083 Msa0404900:CDS
TTGAATCCATCTCCATTGTA+TGG 0.419187 3_2:-38165718 None:intergenic
GAGAGTTCAGCACCAGTGAT+TGG 0.419628 3_2:+38166936 Msa0404900:CDS
CTTATTCTTAAGTAAGCACT+TGG 0.421409 3_2:+38167196 Msa0404900:three_prime_UTR
TGCTGCTGCTGTTGGCTCAA+AGG 0.424491 3_2:+38164888 Msa0404900:CDS
CTCCTTGGTGCTGCTGCTGT+TGG 0.429596 3_2:+38164880 Msa0404900:CDS
TTTCACCATTGTTCCACCAT+TGG 0.430359 3_2:+38167501 Msa0404900:three_prime_UTR
TGCATTTGTGATGTGGGATA+AGG 0.430538 3_2:-38164504 None:intergenic
TCTGTGCCTTGCAAACAATA+TGG 0.436546 3_2:-38164798 None:intergenic
TGAATCAGTTTGGCCAAAGA+AGG 0.439035 3_2:-38166513 None:intergenic
TTGCAGGTGGACTATTTGCT+TGG 0.444087 3_2:+38166482 Msa0404900:intron
AAGGATATGTCTCCGGCTCT+TGG 0.445574 3_2:+38167363 Msa0404900:three_prime_UTR
AGATTCTTAAAACCTTAGAT+AGG 0.450368 3_2:-38165900 None:intergenic
TTGGATTTGAAGTGGATGAT+TGG 0.452855 3_2:-38164538 None:intergenic
TTAGCACTTTCTGTACTCCT+TGG 0.453497 3_2:+38164865 Msa0404900:CDS
CTTTGCCTTTCCAAAGACAT+TGG 0.454759 3_2:-38165677 None:intergenic
TATGAATGAGACTGAGAGTA+GGG 0.459488 3_2:-38164642 None:intergenic
ATATGGTTTAAAATTCTCAA+TGG 0.467800 3_2:-38167281 None:intergenic
TGATGTGGGATAAGGTTGTA+AGG 0.467999 3_2:-38164496 None:intergenic
AGAGAGAGAGTTCCCTGGTC+AGG 0.474121 3_2:+38165774 Msa0404900:CDS
GACTGAGAGTAGGGAGAGAG+TGG 0.479381 3_2:-38164633 None:intergenic
TCACCTGCTGATGCTGCCTA+TGG 0.482457 3_2:+38164913 Msa0404900:CDS
TACATTTGCAAGGCTCAAGC+TGG 0.487789 3_2:+38167062 Msa0404900:CDS
ATTACAGCAACTGTAAATGA+TGG 0.489996 3_2:+38167032 Msa0404900:CDS
GCCTTGCAAACAATATGGTT+TGG 0.497299 3_2:-38164793 None:intergenic
TCTCCATAGGCAGCATCAGC+AGG 0.502473 3_2:-38164916 None:intergenic
TTTGATTGCATTTGTGATGT+GGG 0.512792 3_2:-38164510 None:intergenic
TTACAGTTGCTGTAATCAGC+TGG 0.513113 3_2:-38167025 None:intergenic
ATATGAATGAGACTGAGAGT+AGG 0.515599 3_2:-38164643 None:intergenic
TAAATTAAGAACTTTGGTGA+AGG 0.520267 3_2:+38167152 Msa0404900:exon
AAACAAATGAGACAATTCTT+CGG 0.528462 3_2:+38167461 Msa0404900:three_prime_UTR
GATGCTGCCTATGGAGAAGC+TGG 0.528839 3_2:+38164922 Msa0404900:CDS
CTGTCAGTGTTGTTTCTCGT+AGG 0.529367 3_2:+38164842 Msa0404900:CDS
AGTAGGGAGAGAGTGGTGAG+TGG 0.530021 3_2:-38164626 None:intergenic
ACCTTAGATAGGAACTCCTC+AGG 0.530810 3_2:-38165889 None:intergenic
TACTGTTTCCCACCAATCAC+TGG 0.540361 3_2:-38166948 None:intergenic
GTCAGTTGTTTGGACAAGAA+CGG 0.541430 3_2:-38165839 None:intergenic
ACCAAACCATATTGTTTGCA+AGG 0.544470 3_2:+38164792 Msa0404900:CDS
AACTGTTGGTTCCAGCAAAG+TGG 0.546443 3_2:+38165740 Msa0404900:CDS
TCGTATCTAAGAACCTGACC+AGG 0.546447 3_2:-38165787 None:intergenic
GGATATCTTCAACCAAGAGC+CGG 0.548027 3_2:-38167375 None:intergenic
ATTTGATTGCATTTGTGATG+TGG 0.551626 3_2:-38164511 None:intergenic
TTTGGATATTGGATTTGAAG+TGG 0.551682 3_2:-38164546 None:intergenic
TGTGGCATTGAACATGTGGT+TGG 0.552144 3_2:-38164570 None:intergenic
AAATTAAGAACTTTGGTGAA+GGG 0.554191 3_2:+38167153 Msa0404900:exon
CTTTGGCCAAACTGATTCAG+AGG 0.554518 3_2:+38166517 Msa0404900:CDS
TGGAGATGGATTCAAACTGT+TGG 0.556213 3_2:+38165726 Msa0404900:CDS
TGCAGCCAATGTCTTTGGAA+AGG 0.567085 3_2:+38165672 Msa0404900:intron
TATCTCGAAGGATATGTCTC+CGG 0.568576 3_2:+38167356 Msa0404900:three_prime_UTR
TAAGATGTTTGCCACAGCTA+CGG 0.572617 3_2:-38166913 None:intergenic
AGTTCAGCACCAGTGATTGG+TGG 0.574912 3_2:+38166939 Msa0404900:CDS
CTGATGTGGCATTGAACATG+TGG 0.579978 3_2:-38164574 None:intergenic
GTTCAGCACCAGTGATTGGT+GGG 0.588274 3_2:+38166940 Msa0404900:CDS
AGGACTGCTGATGGAGATGA+AGG 0.590065 3_2:+38166993 Msa0404900:CDS
GATAAATAAAAGTATCTCGA+AGG 0.591889 3_2:+38167344 Msa0404900:three_prime_UTR
TGATACAAATGCCGTAGCTG+TGG 0.593917 3_2:+38166902 Msa0404900:CDS
AGCAAAGAGAGAGAGTTCCC+TGG 0.594993 3_2:+38165769 Msa0404900:CDS
GGCACAGAAACAAGATGTTG+AGG 0.599187 3_2:+38164813 Msa0404900:CDS
GGGAGCAAGAAAGTTTGTTG+AGG 0.618163 3_2:+38167103 Msa0404900:CDS
GTGCAAGAAGCATTGTGTAG+AGG 0.636043 3_2:-38164707 None:intergenic
CTCCTCAGGAGAACCATAGT+CGG 0.636874 3_2:-38165875 None:intergenic
TGGAAAGCTATACATTTGCA+AGG 0.638163 3_2:+38167052 Msa0404900:CDS
AGCCAACAGCAGCAGCACCA+AGG 0.639865 3_2:-38164882 None:intergenic
AGGCTCAAGCTGGAGACAAG+AGG 0.642347 3_2:+38167072 Msa0404900:CDS
TTGATCCAATGGTGGAACAA+TGG 0.643690 3_2:-38167506 None:intergenic
TAGATATGGTGTGTCTGATG+TGG 0.653512 3_2:-38164588 None:intergenic
CTCAAGCTGGAGACAAGAGG+TGG 0.660302 3_2:+38167075 Msa0404900:CDS
ACTGCTGATGGAGATGAAGG+TGG 0.671218 3_2:+38166996 Msa0404900:CDS
GGAGTTGTAAGAGCATATTG+GGG 0.678383 3_2:-38164730 None:intergenic
CACCGACTATGGTTCTCCTG+AGG 0.692239 3_2:+38165873 Msa0404900:CDS
CGTATCTAAGAACCTGACCA+GGG 0.700077 3_2:-38165786 None:intergenic
TGGTCAGGTTCTTAGATACG+AGG 0.713849 3_2:+38165789 Msa0404900:CDS
GAGTTGTAAGAGCATATTGG+GGG 0.741082 3_2:-38164729 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCTAAATATGAAAAAAAATA+AGG - chr3_2:38164962-38164981 None:intergenic 10.0%
!! TAATAAAATATATGTTCATA+AGG - chr3_2:38166078-38166097 None:intergenic 10.0%
!!! TATTCTAAGTAGTATTTTAA+AGG - chr3_2:38165265-38165284 None:intergenic 15.0%
!! TTGTTTAATATTTAATCGAA+CGG + chr3_2:38165293-38165312 Msa0404900:intron 15.0%
!!! AATAACTGATTTTTCATATA+TGG - chr3_2:38167301-38167320 None:intergenic 15.0%
!! ATATATGAAAAATCAGTTAT+TGG + chr3_2:38167300-38167319 Msa0404900:three_prime_UTR 15.0%
!!! TTTTGTTGTTGATAAAATTT+AGG - chr3_2:38167399-38167418 None:intergenic 15.0%
!!! TTTTATCAACAACAAAAATA+AGG + chr3_2:38167402-38167421 Msa0404900:intron 15.0%
!! CTTTGAATTACATTTAGATA+TGG - chr3_2:38164605-38164624 None:intergenic 20.0%
!!! GAATACAATTTTCTAATCTT+AGG - chr3_2:38165004-38165023 None:intergenic 20.0%
!! AAATATAATCAGAATAGTTG+TGG + chr3_2:38165472-38165491 Msa0404900:intron 20.0%
!!! ATGTTAATCACATTTTACTT+TGG + chr3_2:38165507-38165526 Msa0404900:intron 20.0%
!!! TTAGAAATTTGAAGTTATAG+AGG - chr3_2:38166196-38166215 None:intergenic 20.0%
!!! ATATGGTTTAAAATTCTCAA+TGG - chr3_2:38167284-38167303 None:intergenic 20.0%
!! TTTAAATATGGCTAATTCTA+TGG + chr3_2:38167437-38167456 Msa0404900:intron 20.0%
! ACGTCAGTTATATAATGAAT+CGG + chr3_2:38165071-38165090 Msa0404900:intron 25.0%
! AAGTTGTTTATAAATGTGAC+CGG + chr3_2:38165103-38165122 Msa0404900:intron 25.0%
! TTTAATATTTAATCGAACGG+TGG + chr3_2:38165296-38165315 Msa0404900:intron 25.0%
! AGAAATCAAATGAAAACTAG+TGG + chr3_2:38165548-38165567 Msa0404900:intron 25.0%
! AGATTCTTAAAACCTTAGAT+AGG - chr3_2:38165903-38165922 None:intergenic 25.0%
! TCAACAAATATTGTATGTTG+AGG - chr3_2:38166112-38166131 None:intergenic 25.0%
! TTCCATTTGGAAAAAAAGTT+TGG + chr3_2:38166271-38166290 Msa0404900:intron 25.0%
!!! AACCAAACTTTTTTTCCAAA+TGG - chr3_2:38166276-38166295 None:intergenic 25.0%
!!! AAGTTTGGTTCAATGATTTT+TGG + chr3_2:38166286-38166305 Msa0404900:intron 25.0%
! AAAATGCCTTTGAACTTTAA+GGG + chr3_2:38166413-38166432 Msa0404900:intron 25.0%
! TTCACCAAAGTTCTTAATTT+AGG - chr3_2:38167153-38167172 None:intergenic 25.0%
! TAAATTAAGAACTTTGGTGA+AGG + chr3_2:38167152-38167171 Msa0404900:exon 25.0%
! AAATTAAGAACTTTGGTGAA+GGG + chr3_2:38167153-38167172 Msa0404900:exon 25.0%
!!! ACTTGGAGTTTTAATCATAA+TGG + chr3_2:38167213-38167232 Msa0404900:three_prime_UTR 25.0%
!!! CTTTTATTTATCCATTTACG+AGG - chr3_2:38167336-38167355 None:intergenic 25.0%
!!! GATAAATAAAAGTATCTCGA+AGG + chr3_2:38167344-38167363 Msa0404900:three_prime_UTR 25.0%
! AAACAAATGAGACAATTCTT+CGG + chr3_2:38167461-38167480 Msa0404900:three_prime_UTR 25.0%
TTTGATTGCATTTGTGATGT+GGG - chr3_2:38164513-38164532 None:intergenic 30.0%
ATTTGATTGCATTTGTGATG+TGG - chr3_2:38164514-38164533 None:intergenic 30.0%
TTTGGATATTGGATTTGAAG+TGG - chr3_2:38164549-38164568 None:intergenic 30.0%
ATACTTAGACTCTAGCAAAA+TGG + chr3_2:38164684-38164703 Msa0404900:exon 30.0%
!! TTGGTTTGTTGGTAACAATT+TGG - chr3_2:38164777-38164796 None:intergenic 30.0%
!! AACAATATGGTTTGGTTTGT+TGG - chr3_2:38164788-38164807 None:intergenic 30.0%
CATTATATAACTGACGTATC+TGG - chr3_2:38165068-38165087 None:intergenic 30.0%
AGATTTCAACCATTGTATGA+AGG + chr3_2:38165203-38165222 Msa0404900:intron 30.0%
TCAAATGAAAACTAGTGGTT+TGG + chr3_2:38165553-38165572 Msa0404900:intron 30.0%
! TGTTCTTTTTGTCAGTTGTT+TGG - chr3_2:38165852-38165871 None:intergenic 30.0%
CAAATTTCTAAATTCGTCAC+TGG + chr3_2:38166205-38166224 Msa0404900:intron 30.0%
ATTCTTCTACTTAATGTACG+AGG + chr3_2:38166322-38166341 Msa0404900:intron 30.0%
GAAAATGCCTTTGAACTTTA+AGG + chr3_2:38166412-38166431 Msa0404900:intron 30.0%
TTATTGCCCTTAAAGTTCAA+AGG - chr3_2:38166422-38166441 None:intergenic 30.0%
! CTTGGCTGAAATTTAAGATT+TGG + chr3_2:38166450-38166469 Msa0404900:intron 30.0%
AAATTACCTCTGAATCAGTT+TGG - chr3_2:38166526-38166545 None:intergenic 30.0%
ACAGTACATTTCATAATGCA+GGG - chr3_2:38166567-38166586 None:intergenic 30.0%
!! CATCATCTTTTAAGGAAATC+TGG - chr3_2:38166594-38166613 None:intergenic 30.0%
! CCAATATGCATCATCTTTTA+AGG - chr3_2:38166602-38166621 None:intergenic 30.0%
CCTTAAAAGATGATGCATAT+TGG + chr3_2:38166599-38166618 Msa0404900:intron 30.0%
TTGAATGTAACCACATTTGT+CGG + chr3_2:38166717-38166736 Msa0404900:intron 30.0%
ATGATGAGTTGTGCTAATAA+GGG - chr3_2:38166845-38166864 None:intergenic 30.0%
AATGATGAGTTGTGCTAATA+AGG - chr3_2:38166846-38166865 None:intergenic 30.0%
!! ACAACATATCAGTTTTGACA+AGG + chr3_2:38166973-38166992 Msa0404900:CDS 30.0%
ATTACAGCAACTGTAAATGA+TGG + chr3_2:38167032-38167051 Msa0404900:CDS 30.0%
GTTGCCTAAATTAAGAACTT+TGG + chr3_2:38167146-38167165 Msa0404900:exon 30.0%
CTTATTCTTAAGTAAGCACT+TGG + chr3_2:38167196-38167215 Msa0404900:three_prime_UTR 30.0%
! TTGGATTTGAAGTGGATGAT+TGG - chr3_2:38164541-38164560 None:intergenic 35.0%
!!! ATGTGGTTGGTTTTGGATAT+TGG - chr3_2:38164560-38164579 None:intergenic 35.0%
!!! ATTGAACATGTGGTTGGTTT+TGG - chr3_2:38164567-38164586 None:intergenic 35.0%
TATGAATGAGACTGAGAGTA+GGG - chr3_2:38164645-38164664 None:intergenic 35.0%
ATATGAATGAGACTGAGAGT+AGG - chr3_2:38164646-38164665 None:intergenic 35.0%
! TGGAGTTGTAAGAGCATATT+GGG - chr3_2:38164734-38164753 None:intergenic 35.0%
! ATGGAGTTGTAAGAGCATAT+TGG - chr3_2:38164735-38164754 None:intergenic 35.0%
ACCAAACCATATTGTTTGCA+AGG + chr3_2:38164792-38164811 Msa0404900:CDS 35.0%
AAAAATACCAGCTTCTCCAT+AGG - chr3_2:38164932-38164951 None:intergenic 35.0%
TTGTTTATAAATGTGACCGG+AGG + chr3_2:38165106-38165125 Msa0404900:intron 35.0%
TGTTTATAAATGTGACCGGA+GGG + chr3_2:38165107-38165126 Msa0404900:intron 35.0%
TCGTCTGATCTTTAATCCAA+TGG + chr3_2:38165150-38165169 Msa0404900:intron 35.0%
TCTGATCTTTAATCCAATGG+TGG + chr3_2:38165153-38165172 Msa0404900:intron 35.0%
ACCATTGTATGAAGGTTAGA+CGG + chr3_2:38165211-38165230 Msa0404900:intron 35.0%
ATAGCTCATGCATGTTATGT+TGG + chr3_2:38165395-38165414 Msa0404900:intron 35.0%
CTTATTCTCAAAGTCACTCT+TGG - chr3_2:38165626-38165645 None:intergenic 35.0%
! ACAGACTTTTTGCCATACAA+TGG + chr3_2:38165706-38165725 Msa0404900:CDS 35.0%
! TTTTTGCCATACAATGGAGA+TGG + chr3_2:38165712-38165731 Msa0404900:CDS 35.0%
TTGAATCCATCTCCATTGTA+TGG - chr3_2:38165721-38165740 None:intergenic 35.0%
! AAAAAGAACATCACCGACTA+TGG + chr3_2:38165862-38165881 Msa0404900:CDS 35.0%
! ATATTTTACAACCGTTCTCG+AGG + chr3_2:38165977-38165996 Msa0404900:intron 35.0%
! TATTTTACAACCGTTCTCGA+GGG + chr3_2:38165978-38165997 Msa0404900:intron 35.0%
ACATTAAATTCCCTCGAGAA+CGG - chr3_2:38165991-38166010 None:intergenic 35.0%
TCGAGGGAATTTAATGTTAC+AGG + chr3_2:38165994-38166013 Msa0404900:intron 35.0%
TTTCTAAATTCGTCACTGGT+TGG + chr3_2:38166209-38166228 Msa0404900:intron 35.0%
CAAATAAGATTACCACCAGT+AGG + chr3_2:38166235-38166254 Msa0404900:intron 35.0%
AGCTATCTTTGGATTCCATT+TGG + chr3_2:38166258-38166277 Msa0404900:intron 35.0%
TTCTACTTAATGTACGAGGA+AGG + chr3_2:38166326-38166345 Msa0404900:intron 35.0%
AAAAATCGACGAATGTTCAG+TGG + chr3_2:38166361-38166380 Msa0404900:intron 35.0%
AGGGCAATAACAAAAGTTCT+TGG + chr3_2:38166432-38166451 Msa0404900:intron 35.0%
!!! GATTTGGTTTTGATCTTTGC+AGG + chr3_2:38166466-38166485 Msa0404900:intron 35.0%
CACAGTACATTTCATAATGC+AGG - chr3_2:38166568-38166587 None:intergenic 35.0%
TCTATGTGTGAGTTCATATC+TGG - chr3_2:38166666-38166685 None:intergenic 35.0%
TTTCTGAACTTGAATTCCTC+AGG + chr3_2:38166872-38166891 Msa0404900:intron 35.0%
TTCTGAACTTGAATTCCTCA+GGG + chr3_2:38166873-38166892 Msa0404900:intron 35.0%
TGGAAAGCTATACATTTGCA+AGG + chr3_2:38167052-38167071 Msa0404900:CDS 35.0%
GAAGAAATCAACCTCGTAAA+TGG + chr3_2:38167322-38167341 Msa0404900:three_prime_UTR 35.0%
TGATGTGGGATAAGGTTGTA+AGG - chr3_2:38164499-38164518 None:intergenic 40.0%
TGCATTTGTGATGTGGGATA+AGG - chr3_2:38164507-38164526 None:intergenic 40.0%
TAGATATGGTGTGTCTGATG+TGG - chr3_2:38164591-38164610 None:intergenic 40.0%
! GAGTTGTAAGAGCATATTGG+GGG - chr3_2:38164732-38164751 None:intergenic 40.0%
! GGAGTTGTAAGAGCATATTG+GGG - chr3_2:38164733-38164752 None:intergenic 40.0%
CGTTGAGACAAACTTCTAGA+TGG - chr3_2:38164754-38164773 None:intergenic 40.0%
GCCTTGCAAACAATATGGTT+TGG - chr3_2:38164796-38164815 None:intergenic 40.0%
TCTGTGCCTTGCAAACAATA+TGG - chr3_2:38164801-38164820 None:intergenic 40.0%
TTAGCACTTTCTGTACTCCT+TGG + chr3_2:38164865-38164884 Msa0404900:CDS 40.0%
CTTTGCCTTTCCAAAGACAT+TGG - chr3_2:38165680-38165699 None:intergenic 40.0%
! TGGAGATGGATTCAAACTGT+TGG + chr3_2:38165726-38165745 Msa0404900:CDS 40.0%
GTCAGTTGTTTGGACAAGAA+CGG - chr3_2:38165842-38165861 None:intergenic 40.0%
AATCCAAAGATAGCTCCTAC+TGG - chr3_2:38166253-38166272 None:intergenic 40.0%
!!! TTGGTTTTGATCTTTGCAGG+TGG + chr3_2:38166469-38166488 Msa0404900:intron 40.0%
CTTGGAAAACAAGCCTTCTT+TGG + chr3_2:38166500-38166519 Msa0404900:CDS 40.0%
TGAATCAGTTTGGCCAAAGA+AGG - chr3_2:38166516-38166535 None:intergenic 40.0%
ACCAACAATTCGAATCGAAG+GGG - chr3_2:38166782-38166801 None:intergenic 40.0%
CACCAACAATTCGAATCGAA+GGG - chr3_2:38166783-38166802 None:intergenic 40.0%
ACACCAACAATTCGAATCGA+AGG - chr3_2:38166784-38166803 None:intergenic 40.0%
TTTGTATCAAAACCACCCTG+AGG - chr3_2:38166891-38166910 None:intergenic 40.0%
TAAGATGTTTGCCACAGCTA+CGG - chr3_2:38166916-38166935 None:intergenic 40.0%
TTACAGTTGCTGTAATCAGC+TGG - chr3_2:38167028-38167047 None:intergenic 40.0%
TATCTCGAAGGATATGTCTC+CGG + chr3_2:38167356-38167375 Msa0404900:three_prime_UTR 40.0%
TTTCACCATTGTTCCACCAT+TGG + chr3_2:38167501-38167520 Msa0404900:three_prime_UTR 40.0%
! TTGATCCAATGGTGGAACAA+TGG - chr3_2:38167509-38167528 None:intergenic 40.0%
! TGTGGCATTGAACATGTGGT+TGG - chr3_2:38164573-38164592 None:intergenic 45.0%
! CTGATGTGGCATTGAACATG+TGG - chr3_2:38164577-38164596 None:intergenic 45.0%
!! GTGCAAGAAGCATTGTGTAG+AGG - chr3_2:38164710-38164729 None:intergenic 45.0%
GGCACAGAAACAAGATGTTG+AGG + chr3_2:38164813-38164832 Msa0404900:CDS 45.0%
!! CTGTCAGTGTTGTTTCTCGT+AGG + chr3_2:38164842-38164861 Msa0404900:CDS 45.0%
! GCTCTAAGTTATACTCCCTC+CGG - chr3_2:38165125-38165144 None:intergenic 45.0%
TAGTCTCAAGTCTCCACCAT+TGG - chr3_2:38165169-38165188 None:intergenic 45.0%
GCCGTCTAACCTTCATACAA+TGG - chr3_2:38165215-38165234 None:intergenic 45.0%
TTCGTTGCAGCCAATGTCTT+TGG + chr3_2:38165667-38165686 Msa0404900:intron 45.0%
! TGCAGCCAATGTCTTTGGAA+AGG + chr3_2:38165672-38165691 Msa0404900:intron 45.0%
!! AACTGTTGGTTCCAGCAAAG+TGG + chr3_2:38165740-38165759 Msa0404900:CDS 45.0%
TTGCTTGGATTCCACTTTGC+TGG - chr3_2:38165754-38165773 None:intergenic 45.0%
CGTATCTAAGAACCTGACCA+GGG - chr3_2:38165789-38165808 None:intergenic 45.0%
TCGTATCTAAGAACCTGACC+AGG - chr3_2:38165790-38165809 None:intergenic 45.0%
TGGTCAGGTTCTTAGATACG+AGG + chr3_2:38165789-38165808 Msa0404900:CDS 45.0%
TCCTGAGGAGTTCCTATCTA+AGG + chr3_2:38165888-38165907 Msa0404900:CDS 45.0%
ACCTTAGATAGGAACTCCTC+AGG - chr3_2:38165892-38165911 None:intergenic 45.0%
! TTCATAAGGTGTCAGCTCAG+TGG - chr3_2:38166064-38166083 None:intergenic 45.0%
!! TTGCAGGTGGACTATTTGCT+TGG + chr3_2:38166482-38166501 Msa0404900:intron 45.0%
! CTTTGGCCAAACTGATTCAG+AGG + chr3_2:38166517-38166536 Msa0404900:CDS 45.0%
GACATTGACACCGACAAATG+TGG - chr3_2:38166730-38166749 None:intergenic 45.0%
TGTCAGACACTAACACATGC+TGG + chr3_2:38166746-38166765 Msa0404900:intron 45.0%
! ACCCCTTCGATTCGAATTGT+TGG + chr3_2:38166778-38166797 Msa0404900:intron 45.0%
TGAACTTGAATTCCTCAGGG+TGG + chr3_2:38166876-38166895 Msa0404900:intron 45.0%
TGATACAAATGCCGTAGCTG+TGG + chr3_2:38166902-38166921 Msa0404900:CDS 45.0%
TACTGTTTCCCACCAATCAC+TGG - chr3_2:38166951-38166970 None:intergenic 45.0%
!! GTTTTGACAAGGACTGCTGA+TGG + chr3_2:38166984-38167003 Msa0404900:CDS 45.0%
TACATTTGCAAGGCTCAAGC+TGG + chr3_2:38167062-38167081 Msa0404900:CDS 45.0%
TGGAGACAAGAGGTGGTTTA+AGG + chr3_2:38167082-38167101 Msa0404900:CDS 45.0%
GGAGACAAGAGGTGGTTTAA+GGG + chr3_2:38167083-38167102 Msa0404900:CDS 45.0%
!! GGGAGCAAGAAAGTTTGTTG+AGG + chr3_2:38167103-38167122 Msa0404900:CDS 45.0%
GGATATCTTCAACCAAGAGC+CGG - chr3_2:38167378-38167397 None:intergenic 45.0%
!!! CTAATTTTTATTTTTAAATA+TGG + chr3_2:38167425-38167444 Msa0404900:intron 5.0%
ACTGCCTGAATCTGTGACTG+CGG + chr3_2:38165328-38165347 Msa0404900:intron 50.0%
TTCTCCGCAGTCACAGATTC+AGG - chr3_2:38165335-38165354 None:intergenic 50.0%
GGGAACTCTCTCTCTTTGCT+TGG - chr3_2:38165769-38165788 None:intergenic 50.0%
AGCAAAGAGAGAGAGTTCCC+TGG + chr3_2:38165769-38165788 Msa0404900:CDS 50.0%
CTCCTCAGGAGAACCATAGT+CGG - chr3_2:38165878-38165897 None:intergenic 50.0%
CCAAAGATAGCTCCTACTGG+TGG - chr3_2:38166250-38166269 None:intergenic 50.0%
CCACCAGTAGGAGCTATCTT+TGG + chr3_2:38166247-38166266 Msa0404900:intron 50.0%
GAGAGTTCAGCACCAGTGAT+TGG + chr3_2:38166936-38166955 Msa0404900:CDS 50.0%
AGTTCAGCACCAGTGATTGG+TGG + chr3_2:38166939-38166958 Msa0404900:CDS 50.0%
GTTCAGCACCAGTGATTGGT+GGG + chr3_2:38166940-38166959 Msa0404900:CDS 50.0%
AGGACTGCTGATGGAGATGA+AGG + chr3_2:38166993-38167012 Msa0404900:CDS 50.0%
ACTGCTGATGGAGATGAAGG+TGG + chr3_2:38166996-38167015 Msa0404900:CDS 50.0%
AAGGATATGTCTCCGGCTCT+TGG + chr3_2:38167363-38167382 Msa0404900:three_prime_UTR 50.0%
AGTAGGGAGAGAGTGGTGAG+TGG - chr3_2:38164629-38164648 None:intergenic 55.0%
GACTGAGAGTAGGGAGAGAG+TGG - chr3_2:38164636-38164655 None:intergenic 55.0%
!! TGCTGCTGCTGTTGGCTCAA+AGG + chr3_2:38164888-38164907 Msa0404900:CDS 55.0%
TCACCTGCTGATGCTGCCTA+TGG + chr3_2:38164913-38164932 Msa0404900:CDS 55.0%
TCTCCATAGGCAGCATCAGC+AGG - chr3_2:38164919-38164938 None:intergenic 55.0%
GATGCTGCCTATGGAGAAGC+TGG + chr3_2:38164922-38164941 Msa0404900:CDS 55.0%
AGAGAGAGAGTTCCCTGGTC+AGG + chr3_2:38165774-38165793 Msa0404900:CDS 55.0%
! CACCGACTATGGTTCTCCTG+AGG + chr3_2:38165873-38165892 Msa0404900:CDS 55.0%
AGGCTCAAGCTGGAGACAAG+AGG + chr3_2:38167072-38167091 Msa0404900:CDS 55.0%
CTCAAGCTGGAGACAAGAGG+TGG + chr3_2:38167075-38167094 Msa0404900:CDS 55.0%
!! CTCCTTGGTGCTGCTGCTGT+TGG + chr3_2:38164880-38164899 Msa0404900:CDS 60.0%
AGCCAACAGCAGCAGCACCA+AGG - chr3_2:38164885-38164904 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 38164490 38167533 38164490 ID=Msa0404900;Name=Msa0404900
chr3_2 mRNA 38164490 38167533 38164490 ID=Msa0404900-mRNA-1;Parent=Msa0404900;Name=Msa0404900-mRNA-1;_AED=0.02;_eAED=0.02;_QI=213|1|1|1|0.75|0.6|5|317|261
chr3_2 exon 38164490 38164943 38164490 ID=Msa0404900-mRNA-1:exon:7576;Parent=Msa0404900-mRNA-1
chr3_2 exon 38165677 38165909 38165677 ID=Msa0404900-mRNA-1:exon:7577;Parent=Msa0404900-mRNA-1
chr3_2 exon 38166488 38166538 38166488 ID=Msa0404900-mRNA-1:exon:7578;Parent=Msa0404900-mRNA-1
chr3_2 exon 38166894 38167396 38166894 ID=Msa0404900-mRNA-1:exon:7579;Parent=Msa0404900-mRNA-1
chr3_2 exon 38167459 38167533 38167459 ID=Msa0404900-mRNA-1:exon:7580;Parent=Msa0404900-mRNA-1
chr3_2 five_prime_UTR 38164490 38164702 38164490 ID=Msa0404900-mRNA-1:five_prime_utr;Parent=Msa0404900-mRNA-1
chr3_2 CDS 38164703 38164943 38164703 ID=Msa0404900-mRNA-1:cds;Parent=Msa0404900-mRNA-1
chr3_2 CDS 38165677 38165909 38165677 ID=Msa0404900-mRNA-1:cds;Parent=Msa0404900-mRNA-1
chr3_2 CDS 38166488 38166538 38166488 ID=Msa0404900-mRNA-1:cds;Parent=Msa0404900-mRNA-1
chr3_2 CDS 38166894 38167154 38166894 ID=Msa0404900-mRNA-1:cds;Parent=Msa0404900-mRNA-1
chr3_2 three_prime_UTR 38167155 38167396 38167155 ID=Msa0404900-mRNA-1:three_prime_utr;Parent=Msa0404900-mRNA-1
chr3_2 three_prime_UTR 38167459 38167533 38167459 ID=Msa0404900-mRNA-1:three_prime_utr;Parent=Msa0404900-mRNA-1
Gene Sequence

>Msa0404900

ATGGCCTCTACACAATGCTTCTTGCACCCCCAATATGCTCTTACAACTCCATCTAGAAGTTTGTCTCAACGCCAAATTGTTACCAACAAACCAAACCATATTGTTTGCAAGGCACAGAAACAAGATGTTGAGGATGTTGCTGTCAGTGTTGTTTCTCGTAGGTTAGCACTTTCTGTACTCCTTGGTGCTGCTGCTGTTGGCTCAAAGGTTTCACCTGCTGATGCTGCCTATGGAGAAGCTGCCAATGTCTTTGGAAAGGCAAAGACAAACACAGACTTTTTGCCATACAATGGAGATGGATTCAAACTGTTGGTTCCAGCAAAGTGGAATCCAAGCAAAGAGAGAGAGTTCCCTGGTCAGGTTCTTAGATACGAGGATAATTTTGATGCAACAAGCAATGTTTCCGTTCTTGTCCAAACAACTGACAAAAAGAACATCACCGACTATGGTTCTCCTGAGGAGTTCCTATCTAAGGTGGACTATTTGCTTGGAAAACAAGCCTTCTTTGGCCAAACTGATTCAGAGGGTGGTTTTGATACAAATGCCGTAGCTGTGGCAAACATCTTAGAGAGTTCAGCACCAGTGATTGGTGGGAAACAGTATTACAACATATCAGTTTTGACAAGGACTGCTGATGGAGATGAAGGTGGAAAGCACCAGCTGATTACAGCAACTGTAAATGATGGAAAGCTATACATTTGCAAGGCTCAAGCTGGAGACAAGAGGTGGTTTAAGGGAGCAAGAAAGTTTGTTGAGGACACTGCAAGTTCTTTCAGTGTTGCCTAA

Protein sequence

>Msa0404900

MASTQCFLHPQYALTTPSRSLSQRQIVTNKPNHIVCKAQKQDVEDVAVSVVSRRLALSVLLGAAAVGSKVSPADAAYGEAANVFGKAKTNTDFLPYNGDGFKLLVPAKWNPSKEREFPGQVLRYEDNFDATSNVSVLVQTTDKKNITDYGSPEEFLSKVDYLLGKQAFFGQTDSEGGFDTNAVAVANILESSAPVIGGKQYYNISVLTRTADGDEGGKHQLITATVNDGKLYICKAQAGDKRWFKGARKFVEDTASSFSVA*