AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1409530


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1409530 MtrunA17_Chr1g0200581 95.283 212 10 0 1 212 1 212 7.67e-134 374
Msa1409530 MtrunA17_Chr7g0271521 50.476 105 52 0 93 197 161 265 9.17e-22 90.5
Msa1409530 MtrunA17_Chr2g0307701 50.476 105 52 0 93 197 71 175 9.60e-22 88.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1409530 AT1G35680.1 50.000 226 90 7 1 209 1 220 1.70e-53 171
Msa1409530 AT4G30930.1 46.429 112 59 1 92 202 140 251 5.91e-22 90.9

Find 72 sgRNAs with CRISPR-Local

Find 184 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACTATGGACGATATAAATT+TGG 0.192854 tig0023526:+37126 Msa1409530:CDS
CATCCGGATAAATAGCATTA+TGG 0.235579 tig0023526:+37081 Msa1409530:CDS
ACAGCAGATTCAGTGGATTT+AGG 0.249346 tig0023526:-35175 None:intergenic
CTGGAAAATAGCAATGTATT+TGG 0.269474 tig0023526:-37314 None:intergenic
TTTATCCGGATGCGTGTATT+TGG 0.270233 tig0023526:-37070 None:intergenic
ATATCGTCCATAGTAACTTT+TGG 0.287859 tig0023526:-37118 None:intergenic
AAGTTCCCTCTTGTTCAAAA+TGG 0.292679 tig0023526:+34985 Msa1409530:exon
GGTTTGTAAGAGTAAATAAA+TGG 0.298935 tig0023526:+34918 Msa1409530:five_prime_UTR
CCTTGAATTGAAAGATTTGT+TGG 0.302811 tig0023526:+37411 Msa1409530:three_prime_UTR
GTAGGAATTGGAGTGATAAT+TGG 0.305973 tig0023526:-37340 None:intergenic
AGTAACAATTCAAAGTAAAT+AGG 0.311756 tig0023526:-37372 None:intergenic
CCAACAAATCTTTCAATTCA+AGG 0.333576 tig0023526:-37411 None:intergenic
AAGCACTACCGTAGAACTAT+TGG 0.389507 tig0023526:+36770 Msa1409530:CDS
AGGCTCTTCATAGTAGGAAT+TGG 0.391862 tig0023526:-37352 None:intergenic
AAATTGTTCAGTCTCCTTCA+TGG 0.399185 tig0023526:+35245 Msa1409530:CDS
ATCCGGATAAATAGCATTAT+GGG 0.402240 tig0023526:+37082 Msa1409530:CDS
GGCCAGGGTGAACAATATAT+TGG 0.416675 tig0023526:-35904 None:intergenic
GGACTACCCAAAAGTTACTA+TGG 0.431208 tig0023526:+37111 Msa1409530:CDS
ACCACAGCATTTGTTACTAC+TGG 0.436337 tig0023526:-36589 None:intergenic
AGAGGATAGAGTTGAGAGAG+AGG 0.438534 tig0023526:+34962 Msa1409530:five_prime_UTR
GTAAATAGGCTCTTCATAGT+AGG 0.438916 tig0023526:-37358 None:intergenic
GATTCAGTGGATTTAGGAAC+GGG 0.439429 tig0023526:-35169 None:intergenic
TACTGGTTTGCCAATGTAGC+AGG 0.447272 tig0023526:-36572 None:intergenic
GTAAATAAATGGATAGGAAG+AGG 0.447418 tig0023526:+34929 Msa1409530:five_prime_UTR
AGCCCATAATGCTATTTATC+CGG 0.454993 tig0023526:-37084 None:intergenic
ATTGTAGATCGCCCTGCATA+AGG 0.455809 tig0023526:+36525 Msa1409530:intron
TCAGTCTCCTTCATGGGAGA+AGG 0.458893 tig0023526:+35252 Msa1409530:CDS
TGAACAACAAGCCAGCGGCC+AGG 0.470564 tig0023526:-35920 None:intergenic
ACAGATACATCCTGCTACAT+TGG 0.471048 tig0023526:+36562 Msa1409530:CDS
CTTGTTGTTCAGAGGCTCAA+AGG 0.473982 tig0023526:+35932 Msa1409530:CDS
ACTTGAGACTCAGACTCAAC+AGG 0.480236 tig0023526:-35202 None:intergenic
AATTGTTCAGTCTCCTTCAT+GGG 0.484994 tig0023526:+35246 Msa1409530:CDS
GAACAACAAGCCAGCGGCCA+GGG 0.488250 tig0023526:-35919 None:intergenic
TTGAGGCTTTGTTGAACAAT+GGG 0.491609 tig0023526:-35056 None:intergenic
TTGGAGTGATAATTGGAGAC+TGG 0.496604 tig0023526:-37333 None:intergenic
ATATGCGACAGTGGAAGATC+AGG 0.499742 tig0023526:+36612 Msa1409530:CDS
CAGTCTCCTTCATGGGAGAA+GGG 0.511001 tig0023526:+35253 Msa1409530:CDS
CAACCAGTAAAACCTTATGC+AGG 0.515174 tig0023526:-36537 None:intergenic
GCCGCTGGCTTGTTGTTCAG+AGG 0.515615 tig0023526:+35924 Msa1409530:CDS
TGATGAGAAATAGAGAATTG+AGG 0.517104 tig0023526:-35073 None:intergenic
ATATTGTTCACCCTGGCCGC+TGG 0.519617 tig0023526:+35909 Msa1409530:CDS
TGGAAAGAGAGGTTGTGAGA+AGG 0.523157 tig0023526:-35115 None:intergenic
AAATAGCATTATGGGCTATG+AGG 0.523959 tig0023526:+37090 Msa1409530:CDS
TTATTGTATTCAAATACAAA+AGG 0.529558 tig0023526:+36744 Msa1409530:CDS
AGGCAAGCGTTGTGAGAAAG+TGG 0.533199 tig0023526:-35140 None:intergenic
AAAAGACCCTTCTCCCATGA+AGG 0.536139 tig0023526:-35259 None:intergenic
TGTGAAAGAAGAACAGAGAG+TGG 0.542220 tig0023526:-35032 None:intergenic
GTCTGTGTCCAATAGTTCTA+CGG 0.543286 tig0023526:-36778 None:intergenic
ATTGAGGCTTTGTTGAACAA+TGG 0.545857 tig0023526:-35057 None:intergenic
GACAGCCAAATACACGCATC+CGG 0.549802 tig0023526:+37065 Msa1409530:intron
TTGTGAGAAGGAACACGAGA+AGG 0.551095 tig0023526:-35103 None:intergenic
GTAAGAGTAAATAAATGGAT+AGG 0.553474 tig0023526:+34923 Msa1409530:five_prime_UTR
TATTAGCAATCAATTTGCCA+TGG 0.553700 tig0023526:+37209 Msa1409530:three_prime_UTR
TAGAACTATTGGACACAGAC+AGG 0.559177 tig0023526:+36781 Msa1409530:CDS
AGATTCAGTGGATTTAGGAA+CGG 0.565702 tig0023526:-35170 None:intergenic
GGAAGAGGAAGAACATCAAG+AGG 0.578882 tig0023526:+34944 Msa1409530:five_prime_UTR
AGCGTTGTGAGAAAGTGGAT+TGG 0.591056 tig0023526:-35135 None:intergenic
AGGTGCAACAGCAGATTCAG+TGG 0.593123 tig0023526:-35182 None:intergenic
CGCCAATATATTGTTCACCC+TGG 0.594986 tig0023526:+35902 Msa1409530:CDS
GATAAAAGCAAAACTAACCA+TGG 0.603723 tig0023526:-37226 None:intergenic
TGAGTCTGAGTCTCAAGTGT+CGG 0.608217 tig0023526:+35207 Msa1409530:CDS
TGTGAGAAGGAACACGAGAA+GGG 0.611777 tig0023526:-35102 None:intergenic
ACCAGTAGTAACAAATGCTG+TGG 0.613380 tig0023526:+36588 Msa1409530:CDS
AGAAAGTGGATTGGAAAGAG+AGG 0.617691 tig0023526:-35126 None:intergenic
AACCAGTAAAACCTTATGCA+GGG 0.620022 tig0023526:-36536 None:intergenic
GTATACCTTGTCGTTAACGT+TGG 0.621234 tig0023526:-35957 None:intergenic
GAAGGAACACGAGAAGGGAA+AGG 0.624230 tig0023526:-35097 None:intergenic
AGGAGACTGAACAATTTGAG+AGG 0.639275 tig0023526:-35239 None:intergenic
AGGTGCCAACGTTAACGACA+AGG 0.654570 tig0023526:+35952 Msa1409530:CDS
GATTTAGGAACGGGTAACAG+AGG 0.658715 tig0023526:-35160 None:intergenic
GCCTCTGAACAACAAGCCAG+CGG 0.664752 tig0023526:-35925 None:intergenic
TGCTGTGGTATATGCGACAG+TGG 0.682736 tig0023526:+36603 Msa1409530:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATACAATATATTTAAAACTA+TGG + tig0023526:36121-36140 Msa1409530:intron 10.0%
!! ACCTATAAATATAATATAAA+AGG + tig0023526:36278-36297 Msa1409530:intron 10.0%
!! CCTATAAATATAATATAAAA+GGG + tig0023526:36279-36298 Msa1409530:intron 10.0%
!!! AAAAAGTTTTGATAAATAAT+TGG - tig0023526:36837-36856 None:intergenic 10.0%
!! ATATAAAATAGATAAAACCA+TGG - tig0023526:35456-35475 None:intergenic 15.0%
!!! AATATATTTAAAACTATGGT+TGG + tig0023526:36125-36144 Msa1409530:intron 15.0%
!!! CCCTTTTATATTATATTTAT+AGG - tig0023526:36282-36301 None:intergenic 15.0%
!! TATAATATAAAAGGGTTTAA+TGG + tig0023526:36287-36306 Msa1409530:intron 15.0%
!! AAAGTATATTATAAGAAACT+AGG + tig0023526:36311-36330 Msa1409530:intron 15.0%
!! TTATTGTATTCAAATACAAA+AGG + tig0023526:36744-36763 Msa1409530:CDS 15.0%
!! TTTGAACAATTCAAACAAAA+GGG - tig0023526:35345-35364 None:intergenic 20.0%
!!! TTTTGAACAATTCAAACAAA+AGG - tig0023526:35346-35365 None:intergenic 20.0%
!! AAAAATATGCAAACTCAATT+GGG - tig0023526:35423-35442 None:intergenic 20.0%
!!! CATTTATCTGAAATTATTTG+TGG + tig0023526:35483-35502 Msa1409530:intron 20.0%
!! TTGTTTGTAATTGTATTGTT+GGG + tig0023526:35751-35770 Msa1409530:intron 20.0%
!!! TAGGTATTTGTTTATTGTTT+TGG + tig0023526:35801-35820 Msa1409530:intron 20.0%
!!! AGGTATTTGTTTATTGTTTT+GGG + tig0023526:35802-35821 Msa1409530:intron 20.0%
!! GCTAATCATTACTTAATAAA+TGG - tig0023526:36095-36114 None:intergenic 20.0%
!! ATGAATGAAATTCAAATCAT+TGG + tig0023526:36372-36391 Msa1409530:intron 20.0%
!!! TGTACATTAATTTTAACTCT+TGG + tig0023526:36501-36520 Msa1409530:intron 20.0%
!! AACATTCATAAAAAATGACA+TGG - tig0023526:37003-37022 None:intergenic 20.0%
!! AGTAACAATTCAAAGTAAAT+AGG - tig0023526:37375-37394 None:intergenic 20.0%
! GGTTTGTAAGAGTAAATAAA+TGG + tig0023526:34918-34937 Msa1409530:five_prime_UTR 25.0%
! GTAAGAGTAAATAAATGGAT+AGG + tig0023526:34923-34942 Msa1409530:five_prime_UTR 25.0%
!!! CTTTTTTTTAATGTTGAGTG+TGG + tig0023526:35310-35329 Msa1409530:intron 25.0%
! TGTTAATCTAGATTGTTCTA+TGG + tig0023526:35387-35406 Msa1409530:intron 25.0%
! CAAAAATATGCAAACTCAAT+TGG - tig0023526:35424-35443 None:intergenic 25.0%
!! CAATTGAGTTTGCATATTTT+TGG + tig0023526:35422-35441 Msa1409530:intron 25.0%
! TTAGGAATGGTTAAGTAAAA+TGG + tig0023526:35528-35547 Msa1409530:intron 25.0%
! TAGGAATGGTTAAGTAAAAT+GGG + tig0023526:35529-35548 Msa1409530:intron 25.0%
! GATAGACTTTACTTATGTTT+CGG - tig0023526:35603-35622 None:intergenic 25.0%
!! ATATAGGTTGAAACAATCAT+TGG - tig0023526:35625-35644 None:intergenic 25.0%
!!! TCAACCTATATTTTTGAACT+TGG + tig0023526:35634-35653 Msa1409530:intron 25.0%
!!! CAACCTATATTTTTGAACTT+GGG + tig0023526:35635-35654 Msa1409530:intron 25.0%
! GTTGTTTGTAATTGTATTGT+TGG + tig0023526:35750-35769 Msa1409530:intron 25.0%
!!! GGTATTTGTTTATTGTTTTG+GGG + tig0023526:35803-35822 Msa1409530:intron 25.0%
!!! TTGTGTTGTTTTGTTTAGAT+TGG + tig0023526:35875-35894 Msa1409530:intron 25.0%
! GAAATAATGAGTTTAACGAA+TGG - tig0023526:36006-36025 None:intergenic 25.0%
!! ATAAATGGTAGCAATTTTAG+AGG - tig0023526:36080-36099 None:intergenic 25.0%
!! CTATCATGATGTCAATTTTA+CGG - tig0023526:36191-36210 None:intergenic 25.0%
! AAGTGGCAAATTATAATCAT+TGG - tig0023526:36406-36425 None:intergenic 25.0%
! AACAGTAAATGTTCAGATAA+TGG - tig0023526:36456-36475 None:intergenic 25.0%
!!! TTTTAGCTTTTTTTCCTAAC+AGG - tig0023526:36666-36685 None:intergenic 25.0%
! TAAAACAAAATGGTTAAGGT+AGG - tig0023526:36702-36721 None:intergenic 25.0%
! GCATTAAAACAAAATGGTTA+AGG - tig0023526:36706-36725 None:intergenic 25.0%
!!! TAACCATTTTGTTTTAATGC+AGG + tig0023526:36706-36725 Msa1409530:intron 25.0%
!!! AACCATTTTGTTTTAATGCA+GGG + tig0023526:36707-36726 Msa1409530:intron 25.0%
! CATTCATCATATATACAACA+TGG - tig0023526:36956-36975 None:intergenic 25.0%
! TCAAATCAAACATCAAATTC+TGG - tig0023526:37033-37052 None:intergenic 25.0%
! TACTATGGACGATATAAATT+TGG + tig0023526:37126-37145 Msa1409530:CDS 25.0%
GTAAATAAATGGATAGGAAG+AGG + tig0023526:34929-34948 Msa1409530:five_prime_UTR 30.0%
TGATGAGAAATAGAGAATTG+AGG - tig0023526:35076-35095 None:intergenic 30.0%
!! TTGTAATGGTGAGTTTTTAG+TGG + tig0023526:35287-35306 Msa1409530:intron 30.0%
! TTTTAATGTTGAGTGTGGAT+TGG + tig0023526:35315-35334 Msa1409530:intron 30.0%
TTTAATGTTGAGTGTGGATT+GGG + tig0023526:35316-35335 Msa1409530:intron 30.0%
AGTATTGCACATTCAAGATT+AGG + tig0023526:35510-35529 Msa1409530:intron 30.0%
GAACCCAAGTTCAAAAATAT+AGG - tig0023526:35641-35660 None:intergenic 30.0%
TCAATTATAGACGAATCACT+CGG - tig0023526:35666-35685 None:intergenic 30.0%
!!! TGTTGTTTTGTTTAGATTGG+TGG + tig0023526:35878-35897 Msa1409530:intron 30.0%
!! TTTAAAACTATGGTTGGCTT+AGG + tig0023526:36131-36150 Msa1409530:intron 30.0%
TATGGTCAAAATACCTCTTT+AGG - tig0023526:36337-36356 None:intergenic 30.0%
CATTCATTTCTCACATCATA+TGG - tig0023526:36355-36374 None:intergenic 30.0%
AATCGTTTCAAAGAGAAAAG+TGG - tig0023526:36423-36442 None:intergenic 30.0%
AACCCTGCATTAAAACAAAA+TGG - tig0023526:36712-36731 None:intergenic 30.0%
ATTGGATTGCACAAAGTAAA+AGG - tig0023526:36819-36838 None:intergenic 30.0%
TGAAAGGAGCTTAGAAATAT+GGG + tig0023526:36927-36946 Msa1409530:intron 30.0%
ATCCGGATAAATAGCATTAT+GGG + tig0023526:37082-37101 Msa1409530:CDS 30.0%
! TATCGTCCATAGTAACTTTT+GGG - tig0023526:37120-37139 None:intergenic 30.0%
! ATATCGTCCATAGTAACTTT+TGG - tig0023526:37121-37140 None:intergenic 30.0%
TATTAGCAATCAATTTGCCA+TGG + tig0023526:37209-37228 Msa1409530:three_prime_UTR 30.0%
GATAAAAGCAAAACTAACCA+TGG - tig0023526:37229-37248 None:intergenic 30.0%
!!! GGTTAGTTTTGCTTTTATCA+TGG + tig0023526:37230-37249 Msa1409530:three_prime_UTR 30.0%
!! AGTTTTGCTTTTATCATGGT+TGG + tig0023526:37234-37253 Msa1409530:three_prime_UTR 30.0%
CTGGAAAATAGCAATGTATT+TGG - tig0023526:37317-37336 None:intergenic 30.0%
CCAACAAATCTTTCAATTCA+AGG - tig0023526:37414-37433 None:intergenic 30.0%
CCTTGAATTGAAAGATTTGT+TGG + tig0023526:37411-37430 Msa1409530:three_prime_UTR 30.0%
AAGTTCCCTCTTGTTCAAAA+TGG + tig0023526:34985-35004 Msa1409530:exon 35.0%
!! AGAAGCCATTTTGAACAAGA+GGG - tig0023526:34993-35012 None:intergenic 35.0%
!! TTGAGGCTTTGTTGAACAAT+GGG - tig0023526:35059-35078 None:intergenic 35.0%
!! ATTGAGGCTTTGTTGAACAA+TGG - tig0023526:35060-35079 None:intergenic 35.0%
! AGATTCAGTGGATTTAGGAA+CGG - tig0023526:35173-35192 None:intergenic 35.0%
AAATTGTTCAGTCTCCTTCA+TGG + tig0023526:35245-35264 Msa1409530:CDS 35.0%
AATTGTTCAGTCTCCTTCAT+GGG + tig0023526:35246-35265 Msa1409530:CDS 35.0%
! CAAAAGTTACATGCTTTGAG+TGG + tig0023526:35361-35380 Msa1409530:intron 35.0%
!!! TATTTTTGGCTCTATCACCA+TGG + tig0023526:35436-35455 Msa1409530:intron 35.0%
TGCACATTCAAGATTAGGAA+TGG + tig0023526:35515-35534 Msa1409530:intron 35.0%
CAATTATAGACGAATCACTC+GGG - tig0023526:35665-35684 None:intergenic 35.0%
TCAATCACGTAGCTAGTAAA+AGG + tig0023526:35705-35724 Msa1409530:intron 35.0%
CAATCACGTAGCTAGTAAAA+GGG + tig0023526:35706-35725 Msa1409530:intron 35.0%
!! AGCTAGTAAAAGGGTTAGTT+TGG + tig0023526:35715-35734 Msa1409530:intron 35.0%
!! AGTAAAAGGGTTAGTTTGGA+TGG + tig0023526:35719-35738 Msa1409530:intron 35.0%
!! AGTTTGTTGGGTTGGTAAAT+AGG + tig0023526:35782-35801 Msa1409530:intron 35.0%
TGCTTAAGGAGCAAAGAAAA+TGG - tig0023526:36054-36073 None:intergenic 35.0%
!! AATTTTAGAGGCAGTGCTTA+AGG - tig0023526:36068-36087 None:intergenic 35.0%
! CAATTTTACGGAACCAGAAA+GGG - tig0023526:36179-36198 None:intergenic 35.0%
! TCAATTTTACGGAACCAGAA+AGG - tig0023526:36180-36199 None:intergenic 35.0%
ACTACTAATGACCTGAACTA+TGG + tig0023526:36249-36268 Msa1409530:intron 35.0%
CTACTAATGACCTGAACTAT+GGG + tig0023526:36250-36269 Msa1409530:intron 35.0%
ATAAGAAACTAGGCCTAAAG+AGG + tig0023526:36321-36340 Msa1409530:intron 35.0%
AACCAGTAAAACCTTATGCA+GGG - tig0023526:36539-36558 None:intergenic 35.0%
TTACCCTTAGACTTTCTGAA+AGG + tig0023526:36911-36930 Msa1409530:intron 35.0%
CTGAAAGGAGCTTAGAAATA+TGG + tig0023526:36926-36945 Msa1409530:intron 35.0%
TATGATGAATGTTTGCCTGT+AGG + tig0023526:36965-36984 Msa1409530:intron 35.0%
CATCCGGATAAATAGCATTA+TGG + tig0023526:37081-37100 Msa1409530:CDS 35.0%
! AGCCCATAATGCTATTTATC+CGG - tig0023526:37087-37106 None:intergenic 35.0%
! AAATAGCATTATGGGCTATG+AGG + tig0023526:37090-37109 Msa1409530:CDS 35.0%
GTAGGAATTGGAGTGATAAT+TGG - tig0023526:37343-37362 None:intergenic 35.0%
GTAAATAGGCTCTTCATAGT+AGG - tig0023526:37361-37380 None:intergenic 35.0%
!! CAGAAGCCATTTTGAACAAG+AGG - tig0023526:34994-35013 None:intergenic 40.0%
TGTGAAAGAAGAACAGAGAG+TGG - tig0023526:35035-35054 None:intergenic 40.0%
!! AGAAAGTGGATTGGAAAGAG+AGG - tig0023526:35129-35148 None:intergenic 40.0%
! GATTCAGTGGATTTAGGAAC+GGG - tig0023526:35172-35191 None:intergenic 40.0%
! ACAGCAGATTCAGTGGATTT+AGG - tig0023526:35178-35197 None:intergenic 40.0%
AGGAGACTGAACAATTTGAG+AGG - tig0023526:35242-35261 None:intergenic 40.0%
!!! GGGTCTTTTTGCTGTTGTAA+TGG + tig0023526:35273-35292 Msa1409530:CDS 40.0%
GTATACCTTGTCGTTAACGT+TGG - tig0023526:35960-35979 None:intergenic 40.0%
AATGACCTGAACTATGGGTT+AGG + tig0023526:36255-36274 Msa1409530:intron 40.0%
CAACCAGTAAAACCTTATGC+AGG - tig0023526:36540-36559 None:intergenic 40.0%
! CTGCATAAGGTTTTACTGGT+TGG + tig0023526:36538-36557 Msa1409530:CDS 40.0%
ACAGATACATCCTGCTACAT+TGG + tig0023526:36562-36581 Msa1409530:CDS 40.0%
ACCAGTAGTAACAAATGCTG+TGG + tig0023526:36588-36607 Msa1409530:CDS 40.0%
! ACCACAGCATTTGTTACTAC+TGG - tig0023526:36592-36611 None:intergenic 40.0%
!! TCTGCTTTTGTTCTCCTGTT+AGG + tig0023526:36649-36668 Msa1409530:intron 40.0%
AAGCACTACCGTAGAACTAT+TGG + tig0023526:36770-36789 Msa1409530:CDS 40.0%
! GTCTGTGTCCAATAGTTCTA+CGG - tig0023526:36781-36800 None:intergenic 40.0%
TAGAACTATTGGACACAGAC+AGG + tig0023526:36781-36800 Msa1409530:CDS 40.0%
GCGATTGAAATGTCTATGTG+TGG + tig0023526:36857-36876 Msa1409530:intron 40.0%
TGAAATGTCTATGTGTGGCT+TGG + tig0023526:36862-36881 Msa1409530:intron 40.0%
GAAATGTCTATGTGTGGCTT+GGG + tig0023526:36863-36882 Msa1409530:intron 40.0%
! TGGCTTGGGAACTAATTCTT+TGG + tig0023526:36877-36896 Msa1409530:intron 40.0%
GGCTTGGGAACTAATTCTTT+GGG + tig0023526:36878-36897 Msa1409530:intron 40.0%
GCTTGGGAACTAATTCTTTG+GGG + tig0023526:36879-36898 Msa1409530:intron 40.0%
GCTCCTTTCAGAAAGTCTAA+GGG - tig0023526:36917-36936 None:intergenic 40.0%
AGCTCCTTTCAGAAAGTCTA+AGG - tig0023526:36918-36937 None:intergenic 40.0%
TTTATCCGGATGCGTGTATT+TGG - tig0023526:37073-37092 None:intergenic 40.0%
GGACTACCCAAAAGTTACTA+TGG + tig0023526:37111-37130 Msa1409530:CDS 40.0%
TTGGAGTGATAATTGGAGAC+TGG - tig0023526:37336-37355 None:intergenic 40.0%
AGGCTCTTCATAGTAGGAAT+TGG - tig0023526:37355-37374 None:intergenic 40.0%
GGAAGAGGAAGAACATCAAG+AGG + tig0023526:34944-34963 Msa1409530:five_prime_UTR 45.0%
AGAGGATAGAGTTGAGAGAG+AGG + tig0023526:34962-34981 Msa1409530:five_prime_UTR 45.0%
TGTGAGAAGGAACACGAGAA+GGG - tig0023526:35105-35124 None:intergenic 45.0%
TTGTGAGAAGGAACACGAGA+AGG - tig0023526:35106-35125 None:intergenic 45.0%
TGGAAAGAGAGGTTGTGAGA+AGG - tig0023526:35118-35137 None:intergenic 45.0%
AGCGTTGTGAGAAAGTGGAT+TGG - tig0023526:35138-35157 None:intergenic 45.0%
GATTTAGGAACGGGTAACAG+AGG - tig0023526:35163-35182 None:intergenic 45.0%
ACTTGAGACTCAGACTCAAC+AGG - tig0023526:35205-35224 None:intergenic 45.0%
TGAGTCTGAGTCTCAAGTGT+CGG + tig0023526:35207-35226 Msa1409530:CDS 45.0%
AAAAGACCCTTCTCCCATGA+AGG - tig0023526:35262-35281 None:intergenic 45.0%
TATGTTTCGGCCAAACTCCA+GGG - tig0023526:35590-35609 None:intergenic 45.0%
TTATGTTTCGGCCAAACTCC+AGG - tig0023526:35591-35610 None:intergenic 45.0%
GCTACGTGATTGAGCTTAAG+TGG - tig0023526:35698-35717 None:intergenic 45.0%
! TTGGGCTACTTCGAGTTTGT+TGG + tig0023526:35769-35788 Msa1409530:intron 45.0%
! TGGGCTACTTCGAGTTTGTT+GGG + tig0023526:35770-35789 Msa1409530:intron 45.0%
!! CTACTTCGAGTTTGTTGGGT+TGG + tig0023526:35774-35793 Msa1409530:intron 45.0%
CGCCAATATATTGTTCACCC+TGG + tig0023526:35902-35921 Msa1409530:CDS 45.0%
GGCCAGGGTGAACAATATAT+TGG - tig0023526:35907-35926 None:intergenic 45.0%
!! CTTGTTGTTCAGAGGCTCAA+AGG + tig0023526:35932-35951 Msa1409530:CDS 45.0%
TAGGTCCTAACCCATAGTTC+AGG - tig0023526:36263-36282 None:intergenic 45.0%
ATTGTAGATCGCCCTGCATA+AGG + tig0023526:36525-36544 Msa1409530:intron 45.0%
!! TACTGGTTTGCCAATGTAGC+AGG - tig0023526:36575-36594 None:intergenic 45.0%
ATATGCGACAGTGGAAGATC+AGG + tig0023526:36612-36631 Msa1409530:CDS 45.0%
GAAGGAACACGAGAAGGGAA+AGG - tig0023526:35100-35119 None:intergenic 50.0%
! AGGCAAGCGTTGTGAGAAAG+TGG - tig0023526:35143-35162 None:intergenic 50.0%
AGGTGCAACAGCAGATTCAG+TGG - tig0023526:35185-35204 None:intergenic 50.0%
TCAGTCTCCTTCATGGGAGA+AGG + tig0023526:35252-35271 Msa1409530:CDS 50.0%
CAGTCTCCTTCATGGGAGAA+GGG + tig0023526:35253-35272 Msa1409530:CDS 50.0%
AGGTGCCAACGTTAACGACA+AGG + tig0023526:35952-35971 Msa1409530:CDS 50.0%
! CGCCCTGCATAAGGTTTTAC+TGG + tig0023526:36534-36553 Msa1409530:CDS 50.0%
TGCTGTGGTATATGCGACAG+TGG + tig0023526:36603-36622 Msa1409530:CDS 50.0%
TGTTTGCCTGTAGGCACATG+AGG + tig0023526:36974-36993 Msa1409530:intron 50.0%
GACAGCCAAATACACGCATC+CGG + tig0023526:37065-37084 Msa1409530:intron 50.0%
TTGTCTTATCCCTCCGACCC+TGG + tig0023526:35570-35589 Msa1409530:intron 55.0%
TTTCGGCCAAACTCCAGGGT+CGG - tig0023526:35586-35605 None:intergenic 55.0%
ATATTGTTCACCCTGGCCGC+TGG + tig0023526:35909-35928 Msa1409530:CDS 55.0%
GCCTCTGAACAACAAGCCAG+CGG - tig0023526:35928-35947 None:intergenic 55.0%
AGTGCTTCCTGCTCCCTTTC+TGG + tig0023526:36163-36182 Msa1409530:intron 55.0%
TACGGAACCAGAAAGGGAGC+AGG - tig0023526:36173-36192 None:intergenic 55.0%
TGGAAGCCTCATGTGCCTAC+AGG - tig0023526:36983-37002 None:intergenic 55.0%
ATCCCTCCGACCCTGGAGTT+TGG + tig0023526:35577-35596 Msa1409530:intron 60.0%
GAACAACAAGCCAGCGGCCA+GGG - tig0023526:35922-35941 None:intergenic 60.0%
TGAACAACAAGCCAGCGGCC+AGG - tig0023526:35923-35942 None:intergenic 60.0%
!! GCCGCTGGCTTGTTGTTCAG+AGG + tig0023526:35924-35943 Msa1409530:CDS 60.0%
GGCCAAACTCCAGGGTCGGA+GGG - tig0023526:35582-35601 None:intergenic 65.0%
CGGCCAAACTCCAGGGTCGG+AGG - tig0023526:35583-35602 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
tig0023526 gene 34915 37449 34915 ID=Msa1409530;Name=Msa1409530
tig0023526 mRNA 34915 37449 34915 ID=Msa1409530-mRNA-1;Parent=Msa1409530;Name=Msa1409530-mRNA-1;_AED=0.01;_eAED=0.01;_QI=89|1|1|1|1|1|5|290|212
tig0023526 exon 34915 35294 34915 ID=Msa1409530-mRNA-1:exon:26053;Parent=Msa1409530-mRNA-1
tig0023526 exon 35893 35973 35893 ID=Msa1409530-mRNA-1:exon:26054;Parent=Msa1409530-mRNA-1
tig0023526 exon 36532 36633 36532 ID=Msa1409530-mRNA-1:exon:26055;Parent=Msa1409530-mRNA-1
tig0023526 exon 36728 36802 36728 ID=Msa1409530-mRNA-1:exon:26056;Parent=Msa1409530-mRNA-1
tig0023526 exon 37070 37449 37070 ID=Msa1409530-mRNA-1:exon:26057;Parent=Msa1409530-mRNA-1
tig0023526 five_prime_UTR 34915 35003 34915 ID=Msa1409530-mRNA-1:five_prime_utr;Parent=Msa1409530-mRNA-1
tig0023526 CDS 35004 35294 35004 ID=Msa1409530-mRNA-1:cds;Parent=Msa1409530-mRNA-1
tig0023526 CDS 35893 35973 35893 ID=Msa1409530-mRNA-1:cds;Parent=Msa1409530-mRNA-1
tig0023526 CDS 36532 36633 36532 ID=Msa1409530-mRNA-1:cds;Parent=Msa1409530-mRNA-1
tig0023526 CDS 36728 36802 36728 ID=Msa1409530-mRNA-1:cds;Parent=Msa1409530-mRNA-1
tig0023526 CDS 37070 37159 37070 ID=Msa1409530-mRNA-1:cds;Parent=Msa1409530-mRNA-1
tig0023526 three_prime_UTR 37160 37449 37160 ID=Msa1409530-mRNA-1:three_prime_utr;Parent=Msa1409530-mRNA-1
Gene Sequence

>Msa1409530

ATGGCTTCTGCAACTGCTTCTACTCTTTCCACTCTCTGTTCTTCTTTCACAACCCATTGTTCAACAAAGCCTCAATTCTCTATTTCTCATCAACCTTTCCCTTCTCGTGTTCCTTCTCACAACCTCTCTTTCCAATCCACTTTCTCACAACGCTTGCCTCTGTTACCCGTTCCTAAATCCACTGAATCTGCTGTTGCACCTGTTGAGTCTGAGTCTCAAGTGTCGGAGTCTGAATCCTCTCAAATTGTTCAGTCTCCTTCATGGGAGAAGGGTCTTTTTGCTGTTGTAATGATTGGTGGACGCCAATATATTGTTCACCCTGGCCGCTGGCTTGTTGTTCAGAGGCTCAAAGGTGCCAACGTTAACGACAAGATCGCCCTGCATAAGGTTTTACTGGTTGGAACAGATACATCCTGCTACATTGGCAAACCAGTAGTAACAAATGCTGTGGTATATGCGACAGTGGAAGATCAGGGTTTAGACAACAAAGTTATTGTATTCAAATACAAAAGGAAGAAGCACTACCGTAGAACTATTGGACACAGACAGCCAAATACACGCATCCGGATAAATAGCATTATGGGCTATGAGGACTACCCAAAAGTTACTATGGACGATATAAATTTGGAATCATCATGA

Protein sequence

>Msa1409530

MASATASTLSTLCSSFTTHCSTKPQFSISHQPFPSRVPSHNLSFQSTFSQRLPLLPVPKSTESAVAPVESESQVSESESSQIVQSPSWEKGLFAVVMIGGRQYIVHPGRWLVVQRLKGANVNDKIALHKVLLVGTDTSCYIGKPVVTNAVVYATVEDQGLDNKVIVFKYKRKKHYRRTIGHRQPNTRIRINSIMGYEDYPKVTMDDINLESS*