AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1150130


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1150130 MtrunA17_Chr7g0239341 91.453 117 9 1 4 120 5 120 6.70e-75 218
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1150130 AT5G02120.1 65.169 89 31 0 32 120 22 110 1.07e-35 118

Find 49 sgRNAs with CRISPR-Local

Find 302 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAAATTGAGGCTGTACTTT+TGG 0.250391 7_4:+33092322 None:intergenic
GATGAATGATGATGGTAATT+TGG 0.273708 7_4:+33092609 None:intergenic
CAATTTAAACCACCATTTCT+TGG 0.280965 7_4:-33092307 Msa1150130:CDS
AATTTCCTAAGAACACATTT+TGG 0.292574 7_4:+33090643 None:intergenic
TTACCATCATCATTCATCTT+AGG 0.293810 7_4:-33092604 Msa1150130:CDS
CAAGATTAAAAGTGAACTTT+TGG 0.294042 7_4:+33090588 None:intergenic
CTGCTGGTCTATTCAAGTTA+TGG 0.305815 7_4:+33092533 None:intergenic
TTACAAAGACTGCTGAAATA+TGG 0.315164 7_4:-33092282 Msa1150130:CDS
TGATACCAAAATGTGTTCTT+AGG 0.323210 7_4:-33090648 Msa1150130:three_prime_UTR
AATGTCAATACAATTGTAAA+TGG 0.333821 7_4:-33090719 Msa1150130:three_prime_UTR
CTCTTCCTGTGAGGTGCTGC+TGG 0.363766 7_4:+33092517 None:intergenic
TTTGAAGGAACAAAAGTTGA+TGG 0.364124 7_4:+33092557 None:intergenic
GAGGTGATTGGACTTGAAAT+TGG 0.366463 7_4:-33090894 Msa1150130:CDS
AATTTAAACCACCATTTCTT+GGG 0.388545 7_4:-33092306 Msa1150130:CDS
AACTCTAGAGCTTGCATGAT+AGG 0.431455 7_4:-33092259 Msa1150130:CDS
TGTGGTTTGGAAGCTGGGGT+TGG 0.447263 7_4:+33092753 None:intergenic
TGTTCTTAGGAAATTACCTT+AGG 0.458111 7_4:-33090635 Msa1150130:three_prime_UTR
ATTGGACTTGAAATTGGAAA+AGG 0.466493 7_4:-33090888 Msa1150130:CDS
GTCTTTGTAAACCCAAGAAA+TGG 0.473103 7_4:+33092295 None:intergenic
AGAAATGGTGGTTTAAATTG+AGG 0.476737 7_4:+33092310 None:intergenic
AAGGGAATACTTGAGGTGAT+TGG 0.488182 7_4:-33090906 Msa1150130:CDS
CAAGCAGTAAAACCTCCTTC+TGG 0.490122 7_4:-33092478 Msa1150130:CDS
GCTTGCATGATAGGACTCAT+TGG 0.494425 7_4:-33092250 Msa1150130:CDS
ATTACCTTAGGAGTTGTCTC+TGG 0.513270 7_4:-33090623 Msa1150130:three_prime_UTR
ATGTTGCTTGATTTAGTACA+TGG 0.521063 7_4:-33090695 Msa1150130:three_prime_UTR
GATAAAGTGCTTACACCAGA+AGG 0.549715 7_4:+33092463 None:intergenic
ATGATCAAAGAGGAATATCA+AGG 0.554694 7_4:+33090865 None:intergenic
ACTCACAAGCTCTACAATGA+AGG 0.558455 7_4:+33092225 None:intergenic
ATGAAATTGAATGATCAAAG+AGG 0.565873 7_4:+33090855 None:intergenic
GTTCCTAAGATGAATGATGA+TGG 0.568966 7_4:+33092601 None:intergenic
CAGCTACTCCTTCACTGTGC+GGG 0.569517 7_4:+33092666 None:intergenic
TTTGGTTGATGAGGTAGCCA+TGG 0.573745 7_4:+33092627 None:intergenic
GGAAGCTGGGGTTGGCACAA+AGG 0.573930 7_4:+33092761 None:intergenic
TTTGTAAACCCAAGAAATGG+TGG 0.575768 7_4:+33092298 None:intergenic
CTAGATAACCCGCACAGTGA+AGG 0.593238 7_4:-33092674 Msa1150130:five_prime_UTR
ATAGCCAGAGACAACTCCTA+AGG 0.602480 7_4:+33090619 None:intergenic
TCACCTCAAGTATTCCCTTG+TGG 0.604136 7_4:+33090910 None:intergenic
TTTGTGTGGTTTGGAAGCTG+GGG 0.606152 7_4:+33092749 None:intergenic
ATAGACCAGCAGCACCTCAC+AGG 0.617821 7_4:-33092522 Msa1150130:CDS
GTTTGTAGAGTGAAGTGAAG+GGG 0.621170 7_4:+33092579 None:intergenic
GCAGTTATCAACCATTGCCA+TGG 0.621824 7_4:-33092644 Msa1150130:exon
AATCCACAAGGGAATACTTG+AGG 0.628186 7_4:-33090913 Msa1150130:CDS
TGATGGTAATTTGGTTGATG+AGG 0.628797 7_4:+33092618 None:intergenic
TGGTTTGTAGAGTGAAGTGA+AGG 0.633356 7_4:+33092577 None:intergenic
GCAGCTACTCCTTCACTGTG+CGG 0.644479 7_4:+33092665 None:intergenic
TGATGAGGTAGCCATGGCAA+TGG 0.664851 7_4:+33092633 None:intergenic
AAAGTGCTTACACCAGAAGG+AGG 0.665887 7_4:+33092466 None:intergenic
AAGGAAACTCTCTTCCTGTG+AGG 0.718755 7_4:+33092508 None:intergenic
GGTTTGTAGAGTGAAGTGAA+GGG 0.731952 7_4:+33092578 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAAATTAAATGTTTATAAAT+GGG - chr7_4:33091582-33091601 Msa1150130:intron 10.0%
!! AAATTAAATGTTTATAAATG+GGG - chr7_4:33091583-33091602 Msa1150130:intron 10.0%
!!! TCAATTTTAACTTTTTAAAA+TGG - chr7_4:33092493-33092512 Msa1150130:CDS 10.0%
!! CAAATTAAATGTTTATAAAT+GGG - chr7_4:33091582-33091601 Msa1150130:intron 10.0%
!! AAATTAAATGTTTATAAATG+GGG - chr7_4:33091583-33091602 Msa1150130:intron 10.0%
!!! TCAATTTTAACTTTTTAAAA+TGG - chr7_4:33092493-33092512 Msa1150130:CDS 10.0%
!!! TAAGTTATTTATGAAGTTTT+TGG - chr7_4:33090918-33090937 Msa1150130:CDS 15.0%
!!! ATTTGCATTTTATATGTAAT+AGG - chr7_4:33091120-33091139 Msa1150130:intron 15.0%
!!! TTTGCATTTTATATGTAATA+GGG - chr7_4:33091121-33091140 Msa1150130:intron 15.0%
!! CCATTTATAAACATTTAATT+TGG + chr7_4:33091584-33091603 None:intergenic 15.0%
!! CCAAATTAAATGTTTATAAA+TGG - chr7_4:33091581-33091600 Msa1150130:intron 15.0%
!! GTTATAAAATAACAAATAGT+TGG - chr7_4:33091930-33091949 Msa1150130:intron 15.0%
!!! TAATTTTTATAAGCTTATAG+TGG + chr7_4:33092092-33092111 None:intergenic 15.0%
!!! TAAGTTATTTATGAAGTTTT+TGG - chr7_4:33090918-33090937 Msa1150130:CDS 15.0%
!!! ATTTGCATTTTATATGTAAT+AGG - chr7_4:33091120-33091139 Msa1150130:intron 15.0%
!!! TTTGCATTTTATATGTAATA+GGG - chr7_4:33091121-33091140 Msa1150130:intron 15.0%
!! CCATTTATAAACATTTAATT+TGG + chr7_4:33091584-33091603 None:intergenic 15.0%
!! CCAAATTAAATGTTTATAAA+TGG - chr7_4:33091581-33091600 Msa1150130:intron 15.0%
!! GTTATAAAATAACAAATAGT+TGG - chr7_4:33091930-33091949 Msa1150130:intron 15.0%
!!! TAATTTTTATAAGCTTATAG+TGG + chr7_4:33092092-33092111 None:intergenic 15.0%
!!! TATGAAGTTTTTGGATTATT+TGG - chr7_4:33090927-33090946 Msa1150130:intron 20.0%
!!! ATGAAGTTTTTGGATTATTT+GGG - chr7_4:33090928-33090947 Msa1150130:intron 20.0%
!!! TTGCATTTTATATGTAATAG+GGG - chr7_4:33091122-33091141 Msa1150130:intron 20.0%
!! TGCACAAAATTAAGAATAAA+TGG - chr7_4:33091177-33091196 Msa1150130:intron 20.0%
!! ATAAAAACATTGAGATTAGA+TGG - chr7_4:33091203-33091222 Msa1150130:intron 20.0%
!! AATACAATGTAAATGTATAG+AGG - chr7_4:33091299-33091318 Msa1150130:intron 20.0%
!!! TAAACTTTGATTTTAATCTC+GGG + chr7_4:33091325-33091344 None:intergenic 20.0%
!!! GTAAACTTTGATTTTAATCT+CGG + chr7_4:33091326-33091345 None:intergenic 20.0%
!! AAATCAAAGTTTACTAATGT+TGG - chr7_4:33091332-33091351 Msa1150130:intron 20.0%
!! GTAGTGTTTGATAAAATTAA+CGG - chr7_4:33092032-33092051 Msa1150130:intron 20.0%
!!! TTGAATGAAAAAGATCTTTT+TGG + chr7_4:33092156-33092175 None:intergenic 20.0%
!!! AATGAAATTTGATTTATGAG+AGG - chr7_4:33092270-33092289 Msa1150130:CDS 20.0%
!! AGAATAATGTTTATGCTTAA+AGG + chr7_4:33092323-33092342 None:intergenic 20.0%
!! AATCACACAATAACTTAATT+AGG + chr7_4:33092347-33092366 None:intergenic 20.0%
!! AATGTCAATACAATTGTAAA+TGG - chr7_4:33092579-33092598 Msa1150130:CDS 20.0%
!!! AAAAGTTCACTTTTAATCTT+GGG - chr7_4:33092712-33092731 Msa1150130:five_prime_UTR 20.0%
!!! TATGAAGTTTTTGGATTATT+TGG - chr7_4:33090927-33090946 Msa1150130:intron 20.0%
!!! ATGAAGTTTTTGGATTATTT+GGG - chr7_4:33090928-33090947 Msa1150130:intron 20.0%
!!! TTGCATTTTATATGTAATAG+GGG - chr7_4:33091122-33091141 Msa1150130:intron 20.0%
!! TGCACAAAATTAAGAATAAA+TGG - chr7_4:33091177-33091196 Msa1150130:intron 20.0%
!! ATAAAAACATTGAGATTAGA+TGG - chr7_4:33091203-33091222 Msa1150130:intron 20.0%
!! AATACAATGTAAATGTATAG+AGG - chr7_4:33091299-33091318 Msa1150130:intron 20.0%
!!! TAAACTTTGATTTTAATCTC+GGG + chr7_4:33091325-33091344 None:intergenic 20.0%
!!! GTAAACTTTGATTTTAATCT+CGG + chr7_4:33091326-33091345 None:intergenic 20.0%
!! AAATCAAAGTTTACTAATGT+TGG - chr7_4:33091332-33091351 Msa1150130:intron 20.0%
!! GTAGTGTTTGATAAAATTAA+CGG - chr7_4:33092032-33092051 Msa1150130:intron 20.0%
!!! TTGAATGAAAAAGATCTTTT+TGG + chr7_4:33092156-33092175 None:intergenic 20.0%
!!! AATGAAATTTGATTTATGAG+AGG - chr7_4:33092270-33092289 Msa1150130:CDS 20.0%
!! AGAATAATGTTTATGCTTAA+AGG + chr7_4:33092323-33092342 None:intergenic 20.0%
!! AATCACACAATAACTTAATT+AGG + chr7_4:33092347-33092366 None:intergenic 20.0%
!! AATGTCAATACAATTGTAAA+TGG - chr7_4:33092579-33092598 Msa1150130:CDS 20.0%
!!! AAAAGTTCACTTTTAATCTT+GGG - chr7_4:33092712-33092731 Msa1150130:five_prime_UTR 20.0%
!!! TATTCAAGTTATGGTTTTGA+AGG + chr7_4:33090759-33090778 None:intergenic 25.0%
! AATTTAAACCACCATTTCTT+GGG - chr7_4:33090992-33091011 Msa1150130:intron 25.0%
!! TGCATTTTATATGTAATAGG+GGG - chr7_4:33091123-33091142 Msa1150130:intron 25.0%
! GTATTCTATTTGATCAAGAT+CGG + chr7_4:33091284-33091303 None:intergenic 25.0%
!! ACCTGTAAAGTGTTTATAAT+TGG - chr7_4:33091746-33091765 Msa1150130:intron 25.0%
!! CCTGTAAAGTGTTTATAATT+GGG - chr7_4:33091747-33091766 Msa1150130:intron 25.0%
!! CTGTAAAGTGTTTATAATTG+GGG - chr7_4:33091748-33091767 Msa1150130:intron 25.0%
!!! ACACTTTTATAATTTGTGGT+TGG + chr7_4:33091818-33091837 None:intergenic 25.0%
!! AGTCACACTTTTATAATTTG+TGG + chr7_4:33091822-33091841 None:intergenic 25.0%
!!! CCTAAACCAAAATTTTAAGA+TGG + chr7_4:33091902-33091921 None:intergenic 25.0%
!!! CCATCTTAAAATTTTGGTTT+AGG - chr7_4:33091899-33091918 Msa1150130:intron 25.0%
! TATAACAGATGAACTTATAG+CGG - chr7_4:33091955-33091974 Msa1150130:intron 25.0%
! TCAAACACTACAAATTTCAT+CGG + chr7_4:33092023-33092042 None:intergenic 25.0%
!!! GAAAAAGATCTTTTTGGTAA+CGG + chr7_4:33092150-33092169 None:intergenic 25.0%
! ATAATGTTTATGCTTAAAGG+AGG + chr7_4:33092320-33092339 None:intergenic 25.0%
! ATTAAGTTATTGTGTGATTC+TGG - chr7_4:33092348-33092367 Msa1150130:intron 25.0%
! ATGAAATTGAATGATCAAAG+AGG + chr7_4:33092446-33092465 None:intergenic 25.0%
!! AATTTCCTAAGAACACATTT+TGG + chr7_4:33092658-33092677 None:intergenic 25.0%
!! CAAGATTAAAAGTGAACTTT+TGG + chr7_4:33092713-33092732 None:intergenic 25.0%
!!! CAAAAGTTCACTTTTAATCT+TGG - chr7_4:33092711-33092730 Msa1150130:five_prime_UTR 25.0%
!!! TATTCAAGTTATGGTTTTGA+AGG + chr7_4:33090759-33090778 None:intergenic 25.0%
! AATTTAAACCACCATTTCTT+GGG - chr7_4:33090992-33091011 Msa1150130:intron 25.0%
!! TGCATTTTATATGTAATAGG+GGG - chr7_4:33091123-33091142 Msa1150130:intron 25.0%
! GTATTCTATTTGATCAAGAT+CGG + chr7_4:33091284-33091303 None:intergenic 25.0%
!! ACCTGTAAAGTGTTTATAAT+TGG - chr7_4:33091746-33091765 Msa1150130:intron 25.0%
!! CCTGTAAAGTGTTTATAATT+GGG - chr7_4:33091747-33091766 Msa1150130:intron 25.0%
!! CTGTAAAGTGTTTATAATTG+GGG - chr7_4:33091748-33091767 Msa1150130:intron 25.0%
!!! ACACTTTTATAATTTGTGGT+TGG + chr7_4:33091818-33091837 None:intergenic 25.0%
!! AGTCACACTTTTATAATTTG+TGG + chr7_4:33091822-33091841 None:intergenic 25.0%
!!! CCTAAACCAAAATTTTAAGA+TGG + chr7_4:33091902-33091921 None:intergenic 25.0%
!!! CCATCTTAAAATTTTGGTTT+AGG - chr7_4:33091899-33091918 Msa1150130:intron 25.0%
! TATAACAGATGAACTTATAG+CGG - chr7_4:33091955-33091974 Msa1150130:intron 25.0%
! TCAAACACTACAAATTTCAT+CGG + chr7_4:33092023-33092042 None:intergenic 25.0%
!!! GAAAAAGATCTTTTTGGTAA+CGG + chr7_4:33092150-33092169 None:intergenic 25.0%
! ATAATGTTTATGCTTAAAGG+AGG + chr7_4:33092320-33092339 None:intergenic 25.0%
! ATTAAGTTATTGTGTGATTC+TGG - chr7_4:33092348-33092367 Msa1150130:intron 25.0%
! ATGAAATTGAATGATCAAAG+AGG + chr7_4:33092446-33092465 None:intergenic 25.0%
!! AATTTCCTAAGAACACATTT+TGG + chr7_4:33092658-33092677 None:intergenic 25.0%
!! CAAGATTAAAAGTGAACTTT+TGG + chr7_4:33092713-33092732 None:intergenic 25.0%
!!! CAAAAGTTCACTTTTAATCT+TGG - chr7_4:33092711-33092730 Msa1150130:five_prime_UTR 25.0%
!!! TTAGTTGTTTTTGTGTGGTT+TGG + chr7_4:33090561-33090580 None:intergenic 30.0%
!!! CTTGTTTAGTTGTTTTTGTG+TGG + chr7_4:33090566-33090585 None:intergenic 30.0%
CACAAAAACAACTAAACAAG+TGG - chr7_4:33090566-33090585 Msa1150130:three_prime_UTR 30.0%
!! GATGAATGATGATGGTAATT+TGG + chr7_4:33090692-33090711 None:intergenic 30.0%
TTACCATCATCATTCATCTT+AGG - chr7_4:33090694-33090713 Msa1150130:three_prime_UTR 30.0%
TTTGAAGGAACAAAAGTTGA+TGG + chr7_4:33090744-33090763 None:intergenic 30.0%
! TTTTACTGCTTGAACAGTTA+AGG + chr7_4:33090812-33090831 None:intergenic 30.0%
!!! TTTGGGTTTGTGTTATTTTC+AGG - chr7_4:33090945-33090964 Msa1150130:intron 30.0%
! TAAATTGAGGCTGTACTTTT+GGG + chr7_4:33090978-33090997 None:intergenic 30.0%
! TTAAATTGAGGCTGTACTTT+TGG + chr7_4:33090979-33090998 None:intergenic 30.0%
AGAAATGGTGGTTTAAATTG+AGG + chr7_4:33090991-33091010 None:intergenic 30.0%
CAATTTAAACCACCATTTCT+TGG - chr7_4:33090991-33091010 Msa1150130:intron 30.0%
TTACAAAGACTGCTGAAATA+TGG - chr7_4:33091016-33091035 Msa1150130:intron 30.0%
AAGAAGTTGAAAGATAGAAG+AGG - chr7_4:33091441-33091460 Msa1150130:intron 30.0%
AGAAGTTGAAAGATAGAAGA+GGG - chr7_4:33091442-33091461 Msa1150130:intron 30.0%
ATGTTCAATCTTGAACATCA+CGG + chr7_4:33091522-33091541 None:intergenic 30.0%
GTGTGTTAAGAGTCTAATAT+TGG - chr7_4:33091549-33091568 Msa1150130:intron 30.0%
AGTTAGATCCAATTCTAACA+TGG - chr7_4:33091621-33091640 Msa1150130:intron 30.0%
CTCTAATACCATGTTAGAAT+TGG + chr7_4:33091632-33091651 None:intergenic 30.0%
CCCAATTATAAACACTTTAC+AGG + chr7_4:33091750-33091769 None:intergenic 30.0%
! CGTCTACCATCTTAAAATTT+TGG - chr7_4:33091893-33091912 Msa1150130:intron 30.0%
CGAAGTAAAATAACAACCAA+GGG + chr7_4:33092208-33092227 None:intergenic 30.0%
TCGAAGTAAAATAACAACCA+AGG + chr7_4:33092209-33092228 None:intergenic 30.0%
TACTTCGAAATATGATGAGA+TGG - chr7_4:33092221-33092240 Msa1150130:intron 30.0%
! TATTTTGCAGATAATCCACA+AGG - chr7_4:33092373-33092392 Msa1150130:intron 30.0%
! ATTTTGCAGATAATCCACAA+GGG - chr7_4:33092374-33092393 Msa1150130:intron 30.0%
ATTGGACTTGAAATTGGAAA+AGG - chr7_4:33092410-33092429 Msa1150130:intron 30.0%
ATGATCAAAGAGGAATATCA+AGG + chr7_4:33092436-33092455 None:intergenic 30.0%
! AGTACATGTTTTCTGTCATT+TGG - chr7_4:33092521-33092540 Msa1150130:CDS 30.0%
! ATGTTGCTTGATTTAGTACA+TGG - chr7_4:33092603-33092622 Msa1150130:CDS 30.0%
TGATACCAAAATGTGTTCTT+AGG - chr7_4:33092650-33092669 Msa1150130:five_prime_UTR 30.0%
TGTTCTTAGGAAATTACCTT+AGG - chr7_4:33092663-33092682 Msa1150130:five_prime_UTR 30.0%
!!! TTAGTTGTTTTTGTGTGGTT+TGG + chr7_4:33090561-33090580 None:intergenic 30.0%
!!! CTTGTTTAGTTGTTTTTGTG+TGG + chr7_4:33090566-33090585 None:intergenic 30.0%
CACAAAAACAACTAAACAAG+TGG - chr7_4:33090566-33090585 Msa1150130:three_prime_UTR 30.0%
!! GATGAATGATGATGGTAATT+TGG + chr7_4:33090692-33090711 None:intergenic 30.0%
TTACCATCATCATTCATCTT+AGG - chr7_4:33090694-33090713 Msa1150130:three_prime_UTR 30.0%
TTTGAAGGAACAAAAGTTGA+TGG + chr7_4:33090744-33090763 None:intergenic 30.0%
! TTTTACTGCTTGAACAGTTA+AGG + chr7_4:33090812-33090831 None:intergenic 30.0%
!!! TTTGGGTTTGTGTTATTTTC+AGG - chr7_4:33090945-33090964 Msa1150130:intron 30.0%
! TAAATTGAGGCTGTACTTTT+GGG + chr7_4:33090978-33090997 None:intergenic 30.0%
! TTAAATTGAGGCTGTACTTT+TGG + chr7_4:33090979-33090998 None:intergenic 30.0%
AGAAATGGTGGTTTAAATTG+AGG + chr7_4:33090991-33091010 None:intergenic 30.0%
CAATTTAAACCACCATTTCT+TGG - chr7_4:33090991-33091010 Msa1150130:intron 30.0%
TTACAAAGACTGCTGAAATA+TGG - chr7_4:33091016-33091035 Msa1150130:intron 30.0%
AAGAAGTTGAAAGATAGAAG+AGG - chr7_4:33091441-33091460 Msa1150130:intron 30.0%
AGAAGTTGAAAGATAGAAGA+GGG - chr7_4:33091442-33091461 Msa1150130:intron 30.0%
ATGTTCAATCTTGAACATCA+CGG + chr7_4:33091522-33091541 None:intergenic 30.0%
GTGTGTTAAGAGTCTAATAT+TGG - chr7_4:33091549-33091568 Msa1150130:intron 30.0%
AGTTAGATCCAATTCTAACA+TGG - chr7_4:33091621-33091640 Msa1150130:intron 30.0%
CTCTAATACCATGTTAGAAT+TGG + chr7_4:33091632-33091651 None:intergenic 30.0%
CCCAATTATAAACACTTTAC+AGG + chr7_4:33091750-33091769 None:intergenic 30.0%
! CGTCTACCATCTTAAAATTT+TGG - chr7_4:33091893-33091912 Msa1150130:intron 30.0%
CGAAGTAAAATAACAACCAA+GGG + chr7_4:33092208-33092227 None:intergenic 30.0%
TCGAAGTAAAATAACAACCA+AGG + chr7_4:33092209-33092228 None:intergenic 30.0%
TACTTCGAAATATGATGAGA+TGG - chr7_4:33092221-33092240 Msa1150130:intron 30.0%
! TATTTTGCAGATAATCCACA+AGG - chr7_4:33092373-33092392 Msa1150130:intron 30.0%
! ATTTTGCAGATAATCCACAA+GGG - chr7_4:33092374-33092393 Msa1150130:intron 30.0%
ATTGGACTTGAAATTGGAAA+AGG - chr7_4:33092410-33092429 Msa1150130:intron 30.0%
ATGATCAAAGAGGAATATCA+AGG + chr7_4:33092436-33092455 None:intergenic 30.0%
! AGTACATGTTTTCTGTCATT+TGG - chr7_4:33092521-33092540 Msa1150130:CDS 30.0%
! ATGTTGCTTGATTTAGTACA+TGG - chr7_4:33092603-33092622 Msa1150130:CDS 30.0%
TGATACCAAAATGTGTTCTT+AGG - chr7_4:33092650-33092669 Msa1150130:five_prime_UTR 30.0%
TGTTCTTAGGAAATTACCTT+AGG - chr7_4:33092663-33092682 Msa1150130:five_prime_UTR 30.0%
! TGATGGTAATTTGGTTGATG+AGG + chr7_4:33090683-33090702 None:intergenic 35.0%
GTTCCTAAGATGAATGATGA+TGG + chr7_4:33090700-33090719 None:intergenic 35.0%
TTTGTAAACCCAAGAAATGG+TGG + chr7_4:33091003-33091022 None:intergenic 35.0%
GTCTTTGTAAACCCAAGAAA+TGG + chr7_4:33091006-33091025 None:intergenic 35.0%
ACATTGAGATTAGATGGAGA+AGG - chr7_4:33091209-33091228 Msa1150130:intron 35.0%
AGATTAGATGGAGAAGGATT+TGG - chr7_4:33091215-33091234 Msa1150130:intron 35.0%
AGAAGGATTTGGATTCTCTT+CGG - chr7_4:33091226-33091245 Msa1150130:intron 35.0%
TCTATTTGATCAAGATCGGA+CGG + chr7_4:33091280-33091299 None:intergenic 35.0%
AACTGCTTTAATCCGTGAAT+TGG - chr7_4:33091380-33091399 Msa1150130:intron 35.0%
ACCGATCATTTAATACTGCT+GGG - chr7_4:33091689-33091708 Msa1150130:intron 35.0%
CTAACACAACTCCACAAAAT+CGG + chr7_4:33091793-33091812 None:intergenic 35.0%
! TCATTGAACCATGTGTTACT+GGG + chr7_4:33091859-33091878 None:intergenic 35.0%
TTCATTGAACCATGTGTTAC+TGG + chr7_4:33091860-33091879 None:intergenic 35.0%
ACATAAACCAAACAAACCCT+TGG - chr7_4:33092189-33092208 Msa1150130:intron 35.0%
! ATAACAACCAAGGGTTTGTT+TGG + chr7_4:33092199-33092218 None:intergenic 35.0%
TTTATGCTTAAAGGAGGAGT+GGG + chr7_4:33092314-33092333 None:intergenic 35.0%
! TGATGGTAATTTGGTTGATG+AGG + chr7_4:33090683-33090702 None:intergenic 35.0%
GTTCCTAAGATGAATGATGA+TGG + chr7_4:33090700-33090719 None:intergenic 35.0%
TTTGTAAACCCAAGAAATGG+TGG + chr7_4:33091003-33091022 None:intergenic 35.0%
GTCTTTGTAAACCCAAGAAA+TGG + chr7_4:33091006-33091025 None:intergenic 35.0%
ACATTGAGATTAGATGGAGA+AGG - chr7_4:33091209-33091228 Msa1150130:intron 35.0%
AGATTAGATGGAGAAGGATT+TGG - chr7_4:33091215-33091234 Msa1150130:intron 35.0%
AGAAGGATTTGGATTCTCTT+CGG - chr7_4:33091226-33091245 Msa1150130:intron 35.0%
TCTATTTGATCAAGATCGGA+CGG + chr7_4:33091280-33091299 None:intergenic 35.0%
AACTGCTTTAATCCGTGAAT+TGG - chr7_4:33091380-33091399 Msa1150130:intron 35.0%
ACCGATCATTTAATACTGCT+GGG - chr7_4:33091689-33091708 Msa1150130:intron 35.0%
CTAACACAACTCCACAAAAT+CGG + chr7_4:33091793-33091812 None:intergenic 35.0%
! TCATTGAACCATGTGTTACT+GGG + chr7_4:33091859-33091878 None:intergenic 35.0%
TTCATTGAACCATGTGTTAC+TGG + chr7_4:33091860-33091879 None:intergenic 35.0%
ACATAAACCAAACAAACCCT+TGG - chr7_4:33092189-33092208 Msa1150130:intron 35.0%
! ATAACAACCAAGGGTTTGTT+TGG + chr7_4:33092199-33092218 None:intergenic 35.0%
TTTATGCTTAAAGGAGGAGT+GGG + chr7_4:33092314-33092333 None:intergenic 35.0%
!! TTTTGTGTGGTTTGGAAGCT+GGG + chr7_4:33090553-33090572 None:intergenic 40.0%
!! TTTTTGTGTGGTTTGGAAGC+TGG + chr7_4:33090554-33090573 None:intergenic 40.0%
GTTTGTAGAGTGAAGTGAAG+GGG + chr7_4:33090722-33090741 None:intergenic 40.0%
GGTTTGTAGAGTGAAGTGAA+GGG + chr7_4:33090723-33090742 None:intergenic 40.0%
! TGGTTTGTAGAGTGAAGTGA+AGG + chr7_4:33090724-33090743 None:intergenic 40.0%
! CTGCTGGTCTATTCAAGTTA+TGG + chr7_4:33090768-33090787 None:intergenic 40.0%
! GATAAAGTGCTTACACCAGA+AGG + chr7_4:33090838-33090857 None:intergenic 40.0%
!! AACTCTAGAGCTTGCATGAT+AGG - chr7_4:33091039-33091058 Msa1150130:intron 40.0%
ACTCACAAGCTCTACAATGA+AGG + chr7_4:33091076-33091095 None:intergenic 40.0%
CATCAAGAGTCACCAATTCA+CGG + chr7_4:33091395-33091414 None:intergenic 40.0%
GACTCTTGATGCTATTAGAC+TGG - chr7_4:33091404-33091423 Msa1150130:intron 40.0%
CACCGATCATTTAATACTGC+TGG - chr7_4:33091688-33091707 Msa1150130:intron 40.0%
CCCCAGCAGTATTAAATGAT+CGG + chr7_4:33091693-33091712 None:intergenic 40.0%
CCGATCATTTAATACTGCTG+GGG - chr7_4:33091690-33091709 Msa1150130:intron 40.0%
GTTGAGAGTCTCACATTAGA+TGG - chr7_4:33091720-33091739 Msa1150130:intron 40.0%
!! CACCTGTAAAACCGATTTTG+TGG - chr7_4:33091779-33091798 Msa1150130:intron 40.0%
!! CTCCACAAAATCGGTTTTAC+AGG + chr7_4:33091784-33091803 None:intergenic 40.0%
! CGATTTTGTGGAGTTGTGTT+AGG - chr7_4:33091791-33091810 Msa1150130:intron 40.0%
!! TGGTAACGGTTACTTTCTCA+CGG + chr7_4:33092136-33092155 None:intergenic 40.0%
ATGATGAGATGGTGTGTACT+TGG - chr7_4:33092232-33092251 Msa1150130:CDS 40.0%
TGATGAGATGGTGTGTACTT+GGG - chr7_4:33092233-33092252 Msa1150130:CDS 40.0%
GTTTATGCTTAAAGGAGGAG+TGG + chr7_4:33092315-33092334 None:intergenic 40.0%
AATCCACAAGGGAATACTTG+AGG - chr7_4:33092385-33092404 Msa1150130:intron 40.0%
AAGGGAATACTTGAGGTGAT+TGG - chr7_4:33092392-33092411 Msa1150130:intron 40.0%
GAGGTGATTGGACTTGAAAT+TGG - chr7_4:33092404-33092423 Msa1150130:intron 40.0%
ATTACCTTAGGAGTTGTCTC+TGG - chr7_4:33092675-33092694 Msa1150130:five_prime_UTR 40.0%
!! TTTTGTGTGGTTTGGAAGCT+GGG + chr7_4:33090553-33090572 None:intergenic 40.0%
!! TTTTTGTGTGGTTTGGAAGC+TGG + chr7_4:33090554-33090573 None:intergenic 40.0%
GTTTGTAGAGTGAAGTGAAG+GGG + chr7_4:33090722-33090741 None:intergenic 40.0%
GGTTTGTAGAGTGAAGTGAA+GGG + chr7_4:33090723-33090742 None:intergenic 40.0%
! TGGTTTGTAGAGTGAAGTGA+AGG + chr7_4:33090724-33090743 None:intergenic 40.0%
! CTGCTGGTCTATTCAAGTTA+TGG + chr7_4:33090768-33090787 None:intergenic 40.0%
! GATAAAGTGCTTACACCAGA+AGG + chr7_4:33090838-33090857 None:intergenic 40.0%
!! AACTCTAGAGCTTGCATGAT+AGG - chr7_4:33091039-33091058 Msa1150130:intron 40.0%
ACTCACAAGCTCTACAATGA+AGG + chr7_4:33091076-33091095 None:intergenic 40.0%
CATCAAGAGTCACCAATTCA+CGG + chr7_4:33091395-33091414 None:intergenic 40.0%
GACTCTTGATGCTATTAGAC+TGG - chr7_4:33091404-33091423 Msa1150130:intron 40.0%
CACCGATCATTTAATACTGC+TGG - chr7_4:33091688-33091707 Msa1150130:intron 40.0%
CCCCAGCAGTATTAAATGAT+CGG + chr7_4:33091693-33091712 None:intergenic 40.0%
CCGATCATTTAATACTGCTG+GGG - chr7_4:33091690-33091709 Msa1150130:intron 40.0%
GTTGAGAGTCTCACATTAGA+TGG - chr7_4:33091720-33091739 Msa1150130:intron 40.0%
!! CACCTGTAAAACCGATTTTG+TGG - chr7_4:33091779-33091798 Msa1150130:intron 40.0%
!! CTCCACAAAATCGGTTTTAC+AGG + chr7_4:33091784-33091803 None:intergenic 40.0%
! CGATTTTGTGGAGTTGTGTT+AGG - chr7_4:33091791-33091810 Msa1150130:intron 40.0%
!! TGGTAACGGTTACTTTCTCA+CGG + chr7_4:33092136-33092155 None:intergenic 40.0%
ATGATGAGATGGTGTGTACT+TGG - chr7_4:33092232-33092251 Msa1150130:CDS 40.0%
TGATGAGATGGTGTGTACTT+GGG - chr7_4:33092233-33092252 Msa1150130:CDS 40.0%
GTTTATGCTTAAAGGAGGAG+TGG + chr7_4:33092315-33092334 None:intergenic 40.0%
AATCCACAAGGGAATACTTG+AGG - chr7_4:33092385-33092404 Msa1150130:intron 40.0%
AAGGGAATACTTGAGGTGAT+TGG - chr7_4:33092392-33092411 Msa1150130:intron 40.0%
GAGGTGATTGGACTTGAAAT+TGG - chr7_4:33092404-33092423 Msa1150130:intron 40.0%
ATTACCTTAGGAGTTGTCTC+TGG - chr7_4:33092675-33092694 Msa1150130:five_prime_UTR 40.0%
! TTTGTGTGGTTTGGAAGCTG+GGG + chr7_4:33090552-33090571 None:intergenic 45.0%
GCAGTTATCAACCATTGCCA+TGG - chr7_4:33090654-33090673 Msa1150130:three_prime_UTR 45.0%
!! TTTGGTTGATGAGGTAGCCA+TGG + chr7_4:33090674-33090693 None:intergenic 45.0%
AAGGAAACTCTCTTCCTGTG+AGG + chr7_4:33090793-33090812 None:intergenic 45.0%
CAAGCAGTAAAACCTCCTTC+TGG - chr7_4:33090820-33090839 Msa1150130:three_prime_UTR 45.0%
! AAAGTGCTTACACCAGAAGG+AGG + chr7_4:33090835-33090854 None:intergenic 45.0%
GCTTGCATGATAGGACTCAT+TGG - chr7_4:33091048-33091067 Msa1150130:intron 45.0%
AGGATTTGGATTCTCTTCGG+TGG - chr7_4:33091229-33091248 Msa1150130:intron 45.0%
!! AGAGTGCCGTTCAAGATTGT+TGG - chr7_4:33091648-33091667 Msa1150130:intron 45.0%
GGTGGTCCAACAATCTTGAA+CGG + chr7_4:33091657-33091676 None:intergenic 45.0%
ATTGTTGGACCACCTGCTAT+TGG - chr7_4:33091663-33091682 Msa1150130:intron 45.0%
TTGTTGGACCACCTGCTATT+GGG - chr7_4:33091664-33091683 Msa1150130:intron 45.0%
! ACCATGTGTTACTGGGTACT+GGG + chr7_4:33091852-33091871 None:intergenic 45.0%
! AACCATGTGTTACTGGGTAC+TGG + chr7_4:33091853-33091872 None:intergenic 45.0%
! GGTAACGGTTACTTTCTCAC+GGG + chr7_4:33092135-33092154 None:intergenic 45.0%
TCACCTCAAGTATTCCCTTG+TGG + chr7_4:33092391-33092410 None:intergenic 45.0%
ATAGCCAGAGACAACTCCTA+AGG + chr7_4:33092682-33092701 None:intergenic 45.0%
! TTTGTGTGGTTTGGAAGCTG+GGG + chr7_4:33090552-33090571 None:intergenic 45.0%
GCAGTTATCAACCATTGCCA+TGG - chr7_4:33090654-33090673 Msa1150130:three_prime_UTR 45.0%
!! TTTGGTTGATGAGGTAGCCA+TGG + chr7_4:33090674-33090693 None:intergenic 45.0%
AAGGAAACTCTCTTCCTGTG+AGG + chr7_4:33090793-33090812 None:intergenic 45.0%
CAAGCAGTAAAACCTCCTTC+TGG - chr7_4:33090820-33090839 Msa1150130:three_prime_UTR 45.0%
! AAAGTGCTTACACCAGAAGG+AGG + chr7_4:33090835-33090854 None:intergenic 45.0%
GCTTGCATGATAGGACTCAT+TGG - chr7_4:33091048-33091067 Msa1150130:intron 45.0%
AGGATTTGGATTCTCTTCGG+TGG - chr7_4:33091229-33091248 Msa1150130:intron 45.0%
!! AGAGTGCCGTTCAAGATTGT+TGG - chr7_4:33091648-33091667 Msa1150130:intron 45.0%
GGTGGTCCAACAATCTTGAA+CGG + chr7_4:33091657-33091676 None:intergenic 45.0%
ATTGTTGGACCACCTGCTAT+TGG - chr7_4:33091663-33091682 Msa1150130:intron 45.0%
TTGTTGGACCACCTGCTATT+GGG - chr7_4:33091664-33091683 Msa1150130:intron 45.0%
! ACCATGTGTTACTGGGTACT+GGG + chr7_4:33091852-33091871 None:intergenic 45.0%
! AACCATGTGTTACTGGGTAC+TGG + chr7_4:33091853-33091872 None:intergenic 45.0%
! GGTAACGGTTACTTTCTCAC+GGG + chr7_4:33092135-33092154 None:intergenic 45.0%
TCACCTCAAGTATTCCCTTG+TGG + chr7_4:33092391-33092410 None:intergenic 45.0%
ATAGCCAGAGACAACTCCTA+AGG + chr7_4:33092682-33092701 None:intergenic 45.0%
CTAGATAACCCGCACAGTGA+AGG - chr7_4:33090624-33090643 Msa1150130:three_prime_UTR 50.0%
TGATGAGGTAGCCATGGCAA+TGG + chr7_4:33090668-33090687 None:intergenic 50.0%
ATGATCGGTGACCCAATAGC+AGG + chr7_4:33091678-33091697 None:intergenic 50.0%
ACCCAGTACCCAGTAACACA+TGG - chr7_4:33091848-33091867 Msa1150130:intron 50.0%
TGGTGTGTACTTGGGTGTCA+AGG - chr7_4:33092241-33092260 Msa1150130:CDS 50.0%
GGTGTGTACTTGGGTGTCAA+GGG - chr7_4:33092242-33092261 Msa1150130:CDS 50.0%
TGCTTAAAGGAGGAGTGGGA+AGG + chr7_4:33092310-33092329 None:intergenic 50.0%
CTAGATAACCCGCACAGTGA+AGG - chr7_4:33090624-33090643 Msa1150130:three_prime_UTR 50.0%
TGATGAGGTAGCCATGGCAA+TGG + chr7_4:33090668-33090687 None:intergenic 50.0%
ATGATCGGTGACCCAATAGC+AGG + chr7_4:33091678-33091697 None:intergenic 50.0%
ACCCAGTACCCAGTAACACA+TGG - chr7_4:33091848-33091867 Msa1150130:intron 50.0%
TGGTGTGTACTTGGGTGTCA+AGG - chr7_4:33092241-33092260 Msa1150130:CDS 50.0%
GGTGTGTACTTGGGTGTCAA+GGG - chr7_4:33092242-33092261 Msa1150130:CDS 50.0%
TGCTTAAAGGAGGAGTGGGA+AGG + chr7_4:33092310-33092329 None:intergenic 50.0%
! TGTGGTTTGGAAGCTGGGGT+TGG + chr7_4:33090548-33090567 None:intergenic 55.0%
CAGCTACTCCTTCACTGTGC+GGG + chr7_4:33090635-33090654 None:intergenic 55.0%
GCAGCTACTCCTTCACTGTG+CGG + chr7_4:33090636-33090655 None:intergenic 55.0%
ATAGACCAGCAGCACCTCAC+AGG - chr7_4:33090776-33090795 Msa1150130:three_prime_UTR 55.0%
ATCGGTGACCCAATAGCAGG+TGG + chr7_4:33091675-33091694 None:intergenic 55.0%
! TGTGGTTTGGAAGCTGGGGT+TGG + chr7_4:33090548-33090567 None:intergenic 55.0%
CAGCTACTCCTTCACTGTGC+GGG + chr7_4:33090635-33090654 None:intergenic 55.0%
GCAGCTACTCCTTCACTGTG+CGG + chr7_4:33090636-33090655 None:intergenic 55.0%
ATAGACCAGCAGCACCTCAC+AGG - chr7_4:33090776-33090795 Msa1150130:three_prime_UTR 55.0%
ATCGGTGACCCAATAGCAGG+TGG + chr7_4:33091675-33091694 None:intergenic 55.0%
! GGAAGCTGGGGTTGGCACAA+AGG + chr7_4:33090540-33090559 None:intergenic 60.0%
!! CTCTTCCTGTGAGGTGCTGC+TGG + chr7_4:33090784-33090803 None:intergenic 60.0%
! GGAAGCTGGGGTTGGCACAA+AGG + chr7_4:33090540-33090559 None:intergenic 60.0%
!! CTCTTCCTGTGAGGTGCTGC+TGG + chr7_4:33090784-33090803 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 33090522 33092798 33090522 ID=Msa1150130;Name=Msa1150130
chr7_4 mRNA 33090522 33092798 33090522 ID=Msa1150130-mRNA-1;Parent=Msa1150130;Name=Msa1150130-mRNA-1;_AED=0.07;_eAED=0.07;_QI=151|1|1|1|1|1|3|347|120
chr7_4 exon 33090522 33090937 33090522 ID=Msa1150130-mRNA-1:exon:7898;Parent=Msa1150130-mRNA-1
chr7_4 exon 33092231 33092353 33092231 ID=Msa1150130-mRNA-1:exon:7897;Parent=Msa1150130-mRNA-1
chr7_4 exon 33092477 33092798 33092477 ID=Msa1150130-mRNA-1:exon:7896;Parent=Msa1150130-mRNA-1
chr7_4 five_prime_UTR 33092648 33092798 33092648 ID=Msa1150130-mRNA-1:five_prime_utr;Parent=Msa1150130-mRNA-1
chr7_4 CDS 33092477 33092647 33092477 ID=Msa1150130-mRNA-1:cds;Parent=Msa1150130-mRNA-1
chr7_4 CDS 33092231 33092353 33092231 ID=Msa1150130-mRNA-1:cds;Parent=Msa1150130-mRNA-1
chr7_4 CDS 33090869 33090937 33090869 ID=Msa1150130-mRNA-1:cds;Parent=Msa1150130-mRNA-1
chr7_4 three_prime_UTR 33090522 33090868 33090522 ID=Msa1150130-mRNA-1:three_prime_utr;Parent=Msa1150130-mRNA-1
Gene Sequence

>Msa1150130

ATGGCTACCTCATCAACCAAATTACCATCATCATTCATCTTAGGAACCCCTTCACTTCACTCTACAAACCATCAACTTTTGTTCCTTCAAAACCATAACTTGAATAGACCAGCAGCACCTCACAGGAAGAGAGTTTCCTTAACTGTTCAAGCAGTAAAACCTCCTTCTGGTGTTGAATTCCCAAAAGTACAGCCTCAATTTAAACCACCATTTCTTGGGTTTACAAAGACTGCTGAAATATGGAACTCTAGAGCTTGCATGATAGGACTCATTGGAACCTTCATTGTAGAGCTTATAATCCACAAGGGAATACTTGAGGTGATTGGACTTGAAATTGGAAAAGGCCTTGATATTCCTCTTTGA

Protein sequence

>Msa1150130

MATSSTKLPSSFILGTPSLHSTNHQLLFLQNHNLNRPAAPHRKRVSLTVQAVKPPSGVEFPKVQPQFKPPFLGFTKTAEIWNSRACMIGLIGTFIVELIIHKGILEVIGLEIGKGLDIPL*