AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0470080


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0470080 MtrunA17_Chr3g0077271 91.060 302 22 3 5 303 1 300 0.0 532
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0470080 AT4G24090.1 50.903 277 123 3 28 298 36 305 5.53e-85 258

Find 96 sgRNAs with CRISPR-Local

Find 205 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTTGCTCTTAAACACTTTA+AGG 0.074175 3_3:+72131069 Msa0470080:CDS
GATTTGAAGAACGCACTTTC+TGG 0.183220 3_3:+72130917 Msa0470080:CDS
GCCCTTGTTGGCACTTTGTC+AGG 0.205650 3_3:+72132778 Msa0470080:CDS
ATGATAATCGGAAAATTAAT+TGG 0.244930 3_3:-72133338 None:intergenic
TCCGATTATCATAGCGTAAA+TGG 0.252998 3_3:+72133349 Msa0470080:three_prime_UTR
CATGCTGGAAATGGATAGTT+TGG 0.266410 3_3:+72133830 Msa0470080:three_prime_UTR
ACTGGGGTTGCAGCAGCTTT+TGG 0.298292 3_3:+72132940 Msa0470080:CDS
ATGCATGAGCTGAACTTTCT+TGG 0.305829 3_3:+72133576 Msa0470080:three_prime_UTR
AGATTATTTCATGCTGGAAA+TGG 0.309790 3_3:+72133821 Msa0470080:three_prime_UTR
AATAAGGCACTCGTAGAAAA+AGG 0.328136 3_3:-72133940 None:intergenic
TTGCATACAATTCAAAAGTA+TGG 0.344423 3_3:-72133741 None:intergenic
GCATCTATCTCTGCCCTTGT+TGG 0.365023 3_3:+72132766 Msa0470080:CDS
TCCATTTACGCTATGATAAT+CGG 0.383249 3_3:-72133350 None:intergenic
GCACAAAGCAGTCTAAAATA+AGG 0.388633 3_3:-72133956 None:intergenic
TGATCGGGATGAAGAGAGAT+TGG 0.389359 3_3:+72132729 Msa0470080:CDS
TTCGTATGTTGTGCATTGTT+TGG 0.390224 3_3:+72132865 Msa0470080:CDS
ACTTCAAGGAAACGCTTTCC+AGG 0.393652 3_3:+72131105 Msa0470080:CDS
AGGAAGCGTAAATCTAATAA+TGG 0.401341 3_3:-72130801 None:intergenic
CCGCAGCGTGGGTGGGTGGG+TGG 0.405668 3_3:-72130728 None:intergenic
CCCTTGTTGGCACTTTGTCA+GGG 0.409622 3_3:+72132779 Msa0470080:CDS
AATATTAGAAGTGTTTGAAA+AGG 0.416395 3_3:+72133524 Msa0470080:three_prime_UTR
TCCTCCGCAGCGTGGGTGGG+TGG 0.430777 3_3:-72130732 None:intergenic
CCTCCGCAGCGTGGGTGGGT+GGG 0.434745 3_3:-72130731 None:intergenic
ATCATCCAAGTTTCTCCTTA+CGG 0.436352 3_3:-72132905 None:intergenic
CTTATCCTCCGCAGCGTGGG+TGG 0.436672 3_3:-72130736 None:intergenic
CGCTCTTTGTTGCTAAATGC+GGG 0.443266 3_3:+72132658 Msa0470080:CDS
CAGAGAGAAGCAGCTGAGTT+GGG 0.445724 3_3:-72132831 None:intergenic
AGCAAAGTATTCAGAGAGAA+TGG 0.446842 3_3:+72133692 Msa0470080:three_prime_UTR
ACAGAGAGAAGCAGCTGAGT+TGG 0.447865 3_3:-72132832 None:intergenic
CAAGAAGTGGTCCAGCGCTT+AGG 0.448672 3_3:-72133155 None:intergenic
TGAAGAACGAGGTGCATTCA+TGG 0.449382 3_3:+72132687 Msa0470080:CDS
AAAGCTTATTAGCGTATGCC+TGG 0.453590 3_3:+72133190 Msa0470080:CDS
CGCAGCGTGGGTGGGTGGGT+GGG 0.455282 3_3:-72130727 None:intergenic
ATATTAGAAGTGTTTGAAAA+GGG 0.465590 3_3:+72133525 Msa0470080:three_prime_UTR
GAAAAGTGAAGAAGTTGATC+GGG 0.470593 3_3:+72132714 Msa0470080:CDS
AGCTGAACTTTCTTGGAAGA+GGG 0.470679 3_3:+72133583 Msa0470080:three_prime_UTR
GATGATGCTCAGCTTAAGAC+TGG 0.472044 3_3:+72132922 Msa0470080:CDS
ATGCTGGAAATGGATAGTTT+GGG 0.472461 3_3:+72133831 Msa0470080:three_prime_UTR
TCTGAATACTTTGCTGAGGC+AGG 0.475212 3_3:-72133684 None:intergenic
CTATGCTGCATGACTACAAT+GGG 0.476845 3_3:+72133551 Msa0470080:three_prime_UTR
CGTAAATCTAATAATGGAAG+TGG 0.481151 3_3:-72130795 None:intergenic
GAGCTGAACTTTCTTGGAAG+AGG 0.484465 3_3:+72133582 Msa0470080:three_prime_UTR
GTTCTCAGATTATTTCATGC+TGG 0.485230 3_3:+72133815 Msa0470080:three_prime_UTR
GGTGGCCTGAGTGAAGCATA+TGG 0.489258 3_3:-72132806 None:intergenic
ATTCAGAGAGAATGGAAGAG+AGG 0.496321 3_3:+72133700 Msa0470080:three_prime_UTR
GATTACACTCAACAACTTCA+AGG 0.499214 3_3:+72131091 Msa0470080:CDS
GAAGAACGAGGTGCATTCAT+GGG 0.509604 3_3:+72132688 Msa0470080:CDS
CCATGTCTTAATCAGGACAT+TGG 0.510699 3_3:+72133904 Msa0470080:three_prime_UTR
TTATCCTCCGCAGCGTGGGT+GGG 0.511177 3_3:-72130735 None:intergenic
GAACGCACTTTCTGGAATGA+TGG 0.511508 3_3:+72130925 Msa0470080:CDS
AACAAAGGAGAATGAGAAGG+AGG 0.522216 3_3:-72130821 None:intergenic
GAGAAGCAGCTGAGTTGGGT+TGG 0.522960 3_3:-72132827 None:intergenic
TTTCTTATCCTCCGCAGCGT+GGG 0.524085 3_3:-72130739 None:intergenic
GCCCTGACAAAGTGCCAACA+AGG 0.524369 3_3:-72132780 None:intergenic
AAGCAGCTGAGTTGGGTTGG+TGG 0.530246 3_3:-72132824 None:intergenic
GTGGCCTGAGTGAAGCATAT+GGG 0.535009 3_3:-72132805 None:intergenic
CCCACCCACCCACGCTGCGG+AGG 0.537376 3_3:+72130731 Msa0470080:five_prime_UTR
GGTCTTGCAATCCTAAGCGC+TGG 0.540628 3_3:+72133144 Msa0470080:intron
TGAAAAGTGAAGAAGTTGAT+CGG 0.542077 3_3:+72132713 Msa0470080:CDS
ATTAACAAAGGAGAATGAGA+AGG 0.542089 3_3:-72130824 None:intergenic
TCCTGATTAAGACATGGAAA+AGG 0.548915 3_3:-72133898 None:intergenic
AACGCACTTTCTGGAATGAT+GGG 0.549369 3_3:+72130926 Msa0470080:CDS
CAATTGATAAAACACGTTAG+CGG 0.555580 3_3:+72133310 Msa0470080:CDS
CAGAGAGAATGGAAGAGAGG+AGG 0.557632 3_3:+72133703 Msa0470080:three_prime_UTR
CACATAAATAGTTCCATCCC+AGG 0.559029 3_3:-72133208 None:intergenic
AGCAATCTCAACTCTTTGAG+AGG 0.560228 3_3:-72131014 None:intergenic
TCGAAGTTCAGTTCAAGAAG+TGG 0.560534 3_3:-72133168 None:intergenic
ATATACCGTAAGGAGAAACT+TGG 0.564974 3_3:+72132900 Msa0470080:CDS
TTAGAAGTGTTTGAAAAGGG+AGG 0.572869 3_3:+72133528 Msa0470080:three_prime_UTR
CTTTCTTATCCTCCGCAGCG+TGG 0.573836 3_3:-72130740 None:intergenic
ACGCTCTTTGTTGCTAAATG+CGG 0.580608 3_3:+72132657 Msa0470080:CDS
TGATTAAGACATGGAAAAGG+TGG 0.592272 3_3:-72133895 None:intergenic
ATGATGCTCAGCTTAAGACT+GGG 0.594958 3_3:+72132923 Msa0470080:CDS
AACTCAGCTGCTTCTCTCTG+TGG 0.595669 3_3:+72132834 Msa0470080:CDS
GCTGAACTTTCTTGGAAGAG+GGG 0.596838 3_3:+72133584 Msa0470080:three_prime_UTR
GCTATGCTGCATGACTACAA+TGG 0.600401 3_3:+72133550 Msa0470080:three_prime_UTR
CCAATGTCCTGATTAAGACA+TGG 0.601846 3_3:-72133904 None:intergenic
GCTCCCCATATGCTTCACTC+AGG 0.614386 3_3:+72132801 Msa0470080:CDS
AAGCTTATTAGCGTATGCCT+GGG 0.615492 3_3:+72133191 Msa0470080:CDS
ATTTACGTTTGAAATCACTA+CGG 0.616304 3_3:-72133484 None:intergenic
TTATTAGCGTATGCCTGGGA+TGG 0.620264 3_3:+72133195 Msa0470080:CDS
CCACCCACCCACCCACGCTG+CGG 0.621316 3_3:+72130728 None:intergenic
GGATGAAGAGAGATTGGAGT+CGG 0.627110 3_3:+72132735 Msa0470080:CDS
TCTCTCTGAATACTTTGCTG+AGG 0.629890 3_3:-72133688 None:intergenic
CTGGAAATGGATAGTTTGGG+AGG 0.633880 3_3:+72133834 Msa0470080:three_prime_UTR
AAGTCAAAGAGAAATTTCAG+AGG 0.639606 3_3:+72132609 Msa0470080:CDS
TCTTTGTTGCTAAATGCGGG+AGG 0.641623 3_3:+72132661 Msa0470080:CDS
AAGAACGAGGTGCATTCATG+GGG 0.641964 3_3:+72132689 Msa0470080:CDS
GAAGACTATACTCACCACAT+TGG 0.647884 3_3:+72133450 Msa0470080:three_prime_UTR
TGGCCTGAGTGAAGCATATG+GGG 0.653318 3_3:-72132804 None:intergenic
CAGCAGCAGCAAGAACTCAG+AGG 0.673438 3_3:+72130886 Msa0470080:CDS
AGAGGCAAAAGCTATGCTTG+AGG 0.674852 3_3:+72132627 Msa0470080:CDS
CCCTGACAAAGTGCCAACAA+GGG 0.676499 3_3:-72132779 None:intergenic
CGGCATGCAACTTTCCAATG+TGG 0.695904 3_3:-72133464 None:intergenic
GCGGGAGGTGCTGAAGAACG+AGG 0.698522 3_3:+72132676 Msa0470080:CDS
TGATGCTCAGCTTAAGACTG+GGG 0.707538 3_3:+72132924 Msa0470080:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAATAAAATGTTAAGAG+AGG - chr3_3:72132297-72132316 None:intergenic 15.0%
!!! AATGATTATCATTTTTTGTT+TGG - chr3_3:72133430-72133449 None:intergenic 15.0%
!!! TGAAACGTTTTAATTAACAA+AGG - chr3_3:72130839-72130858 None:intergenic 20.0%
!!! TGATTTTCAAAGTAAAGTAT+TGG - chr3_3:72131612-72131631 None:intergenic 20.0%
!!! AATACTTTACTTTGAAAATC+AGG + chr3_3:72131611-72131630 Msa0470080:intron 20.0%
!!! TGACAAATTTTAAAGAGAAA+CGG + chr3_3:72131757-72131776 Msa0470080:intron 20.0%
!! ATTAATAAAATTAAGCAACG+TGG + chr3_3:72132063-72132082 Msa0470080:intron 20.0%
!! TTAATAAAATTAAGCAACGT+GGG + chr3_3:72132064-72132083 Msa0470080:intron 20.0%
!! AAATATTAGAGTAATCCTAT+GGG - chr3_3:72132123-72132142 None:intergenic 20.0%
!! AAAATATTAGAGTAATCCTA+TGG - chr3_3:72132124-72132143 None:intergenic 20.0%
!! ATGATAATCGGAAAATTAAT+TGG - chr3_3:72133341-72133360 None:intergenic 20.0%
!!! AATATTAGAAGTGTTTGAAA+AGG + chr3_3:72133524-72133543 Msa0470080:three_prime_UTR 20.0%
!!! ATATTAGAAGTGTTTGAAAA+GGG + chr3_3:72133525-72133544 Msa0470080:three_prime_UTR 20.0%
! ATTTAGTTAGAATAATGGCA+TGG - chr3_3:72131400-72131419 None:intergenic 25.0%
! ACGCTATTTAGTTAGAATAA+TGG - chr3_3:72131405-72131424 None:intergenic 25.0%
!!! TTTTCAAAGTAAAGTATTGG+AGG - chr3_3:72131609-72131628 None:intergenic 25.0%
! AGAAAATAGATAGTAGTAAG+TGG + chr3_3:72131867-72131886 Msa0470080:intron 25.0%
! AAAGTTTATCCTGAATGAAA+GGG - chr3_3:72132183-72132202 None:intergenic 25.0%
! TAAAGTTTATCCTGAATGAA+AGG - chr3_3:72132184-72132203 None:intergenic 25.0%
!!! AAAAAGTACTTATGATCATC+TGG - chr3_3:72132484-72132503 None:intergenic 25.0%
!! GTGTTTTATCAATTGGAAAA+GGG - chr3_3:72133305-72133324 None:intergenic 25.0%
!! ATTTACGTTTGAAATCACTA+CGG - chr3_3:72133487-72133506 None:intergenic 25.0%
! TTGCATACAATTCAAAAGTA+TGG - chr3_3:72133744-72133763 None:intergenic 25.0%
! CGTAAATCTAATAATGGAAG+TGG - chr3_3:72130798-72130817 None:intergenic 30.0%
! AGGAAGCGTAAATCTAATAA+TGG - chr3_3:72130804-72130823 None:intergenic 30.0%
ATTAACAAAGGAGAATGAGA+AGG - chr3_3:72130827-72130846 None:intergenic 30.0%
ACTTGCTCTTAAACACTTTA+AGG + chr3_3:72131069-72131088 Msa0470080:CDS 30.0%
ACGTATATAAGCTATCTTGT+CGG + chr3_3:72131197-72131216 Msa0470080:intron 30.0%
AAACTCAATATTGATACACC+AGG + chr3_3:72131275-72131294 Msa0470080:intron 30.0%
AACTCAATATTGATACACCA+GGG + chr3_3:72131276-72131295 Msa0470080:intron 30.0%
AAAAAACGACATTTGATGCT+TGG - chr3_3:72131528-72131547 None:intergenic 30.0%
! AGAGTAAGTTTTACAAGTGA+TGG - chr3_3:72131586-72131605 None:intergenic 30.0%
CAAAAATGTCAAAATGAGAG+TGG + chr3_3:72131814-72131833 Msa0470080:intron 30.0%
AAATAGATAGTAGTAAGTGG+TGG + chr3_3:72131870-72131889 Msa0470080:intron 30.0%
TGAGCAAAAATTAACGATGA+AGG + chr3_3:72131908-72131927 Msa0470080:intron 30.0%
! GATATAAGACTAGTTGTTGA+AGG - chr3_3:72132252-72132271 None:intergenic 30.0%
TTGTATACATGCACTCTTTA+TGG + chr3_3:72132452-72132471 Msa0470080:intron 30.0%
! CTGTCTTTATTTGTCAACAA+AGG + chr3_3:72132523-72132542 Msa0470080:intron 30.0%
AAGTCAAAGAGAAATTTCAG+AGG + chr3_3:72132609-72132628 Msa0470080:CDS 30.0%
! TGAAAAGTGAAGAAGTTGAT+CGG + chr3_3:72132713-72132732 Msa0470080:CDS 30.0%
! ATTTTACAGACAAGTCAAGT+TGG + chr3_3:72133013-72133032 Msa0470080:intron 30.0%
! TTTTCCCTTCATTTCTTTTG+TGG + chr3_3:72133056-72133075 Msa0470080:intron 30.0%
! TTTCCCTTCATTTCTTTTGT+GGG + chr3_3:72133057-72133076 Msa0470080:intron 30.0%
! CGTGTTTTATCAATTGGAAA+AGG - chr3_3:72133306-72133325 None:intergenic 30.0%
CAATTGATAAAACACGTTAG+CGG + chr3_3:72133310-72133329 Msa0470080:CDS 30.0%
TCCATTTACGCTATGATAAT+CGG - chr3_3:72133353-72133372 None:intergenic 30.0%
!!! ATTTTTTGTTTGGCGTTTGA+AGG - chr3_3:72133420-72133439 None:intergenic 30.0%
! AGGGGTTGAATATATTTTCA+TGG + chr3_3:72133602-72133621 Msa0470080:three_prime_UTR 30.0%
! GGGGTTGAATATATTTTCAT+GGG + chr3_3:72133603-72133622 Msa0470080:three_prime_UTR 30.0%
! TGAATATATTTTCATGGGTG+AGG + chr3_3:72133608-72133627 Msa0470080:three_prime_UTR 30.0%
! GAATATATTTTCATGGGTGA+GGG + chr3_3:72133609-72133628 Msa0470080:three_prime_UTR 30.0%
AGATTATTTCATGCTGGAAA+TGG + chr3_3:72133821-72133840 Msa0470080:three_prime_UTR 30.0%
! CGACATTTCATTTTCAACGA+TGG - chr3_3:72130863-72130882 None:intergenic 35.0%
GATTACACTCAACAACTTCA+AGG + chr3_3:72131091-72131110 Msa0470080:CDS 35.0%
TTCTAACTAAATAGCGTAGC+AGG + chr3_3:72131408-72131427 Msa0470080:intron 35.0%
! AAGTTTTACAAGTGATGGTC+AGG - chr3_3:72131581-72131600 None:intergenic 35.0%
TGTTCTACTTACATCAACCA+TGG - chr3_3:72131796-72131815 None:intergenic 35.0%
TACGCATAGAACCAATTAAC+AGG + chr3_3:72132034-72132053 Msa0470080:intron 35.0%
TTAATCACTCGCCTGTTAAT+TGG - chr3_3:72132048-72132067 None:intergenic 35.0%
! TTTTTCTTGCCCTTTCATTC+AGG + chr3_3:72132171-72132190 Msa0470080:intron 35.0%
!! CTTGAATCTTGAGGGTATTA+TGG - chr3_3:72132324-72132343 None:intergenic 35.0%
TAATACCCTCAAGATTCAAG+AGG + chr3_3:72132324-72132343 Msa0470080:intron 35.0%
AGTAGGGATAAAATTTCCTC+CGG + chr3_3:72132356-72132375 Msa0470080:intron 35.0%
AGAGTGCATGTATACAACAA+GGG - chr3_3:72132449-72132468 None:intergenic 35.0%
! AAGAGTGCATGTATACAACA+AGG - chr3_3:72132450-72132469 None:intergenic 35.0%
! GAAAAGTGAAGAAGTTGATC+GGG + chr3_3:72132714-72132733 Msa0470080:CDS 35.0%
TTCGTATGTTGTGCATTGTT+TGG + chr3_3:72132865-72132884 Msa0470080:CDS 35.0%
! TGACTTTTCGATATACCGTA+AGG + chr3_3:72132890-72132909 Msa0470080:CDS 35.0%
ATATACCGTAAGGAGAAACT+TGG + chr3_3:72132900-72132919 Msa0470080:CDS 35.0%
ATCATCCAAGTTTCTCCTTA+CGG - chr3_3:72132908-72132927 None:intergenic 35.0%
CAACCCACAAAAGAAATGAA+GGG - chr3_3:72133063-72133082 None:intergenic 35.0%
TCAACCCACAAAAGAAATGA+AGG - chr3_3:72133064-72133083 None:intergenic 35.0%
! CGCTAACGTGTTTTATCAAT+TGG - chr3_3:72133312-72133331 None:intergenic 35.0%
TCCGATTATCATAGCGTAAA+TGG + chr3_3:72133349-72133368 Msa0470080:three_prime_UTR 35.0%
!! TTAGAAGTGTTTGAAAAGGG+AGG + chr3_3:72133528-72133547 Msa0470080:three_prime_UTR 35.0%
! AGCAAAGTATTCAGAGAGAA+TGG + chr3_3:72133692-72133711 Msa0470080:three_prime_UTR 35.0%
GTTCTCAGATTATTTCATGC+TGG + chr3_3:72133815-72133834 Msa0470080:three_prime_UTR 35.0%
ATGCTGGAAATGGATAGTTT+GGG + chr3_3:72133831-72133850 Msa0470080:three_prime_UTR 35.0%
!!! TGTGTGTGAAGTTTTGTTCA+AGG + chr3_3:72133861-72133880 Msa0470080:three_prime_UTR 35.0%
TGATTAAGACATGGAAAAGG+TGG - chr3_3:72133898-72133917 None:intergenic 35.0%
! ACCTTTTCCATGTCTTAATC+AGG + chr3_3:72133897-72133916 Msa0470080:three_prime_UTR 35.0%
TCCTGATTAAGACATGGAAA+AGG - chr3_3:72133901-72133920 None:intergenic 35.0%
! AATAAGGCACTCGTAGAAAA+AGG - chr3_3:72133943-72133962 None:intergenic 35.0%
! GCACAAAGCAGTCTAAAATA+AGG - chr3_3:72133959-72133978 None:intergenic 35.0%
AACAAAGGAGAATGAGAAGG+AGG - chr3_3:72130824-72130843 None:intergenic 40.0%
GATTTGAAGAACGCACTTTC+TGG + chr3_3:72130917-72130936 Msa0470080:CDS 40.0%
!! AACGCACTTTCTGGAATGAT+GGG + chr3_3:72130926-72130945 Msa0470080:CDS 40.0%
AGCAATCTCAACTCTTTGAG+AGG - chr3_3:72131017-72131036 None:intergenic 40.0%
!!! GCAAGAACGTTACTTTTACC+TGG - chr3_3:72131126-72131145 None:intergenic 40.0%
AGCTATCTTGTCGGAACTTA+TGG + chr3_3:72131206-72131225 Msa0470080:intron 40.0%
CTGCAGTTGCATATCAAGTT+TGG + chr3_3:72131307-72131326 Msa0470080:intron 40.0%
ATAGCAGTAGGTGTGTTTGT+TGG - chr3_3:72131373-72131392 None:intergenic 40.0%
ATTTGATGCTTGGTAGATGG+TGG - chr3_3:72131518-72131537 None:intergenic 40.0%
GACATTTGATGCTTGGTAGA+TGG - chr3_3:72131521-72131540 None:intergenic 40.0%
! TTTTACAAGTGATGGTCAGG+TGG - chr3_3:72131578-72131597 None:intergenic 40.0%
GAAATCGTAAAATCTCGCAG+TGG + chr3_3:72131667-72131686 Msa0470080:intron 40.0%
! GATCGTGTAACCTTTGTTTG+TGG + chr3_3:72131710-72131729 Msa0470080:intron 40.0%
TTACATCAACCATGGTCACT+AGG - chr3_3:72131788-72131807 None:intergenic 40.0%
TAGTAGTAAGTGGTGGTCAA+AGG + chr3_3:72131877-72131896 Msa0470080:intron 40.0%
TTAACGATGAAGGAGATCCA+TGG + chr3_3:72131918-72131937 Msa0470080:intron 40.0%
TAACGATGAAGGAGATCCAT+GGG + chr3_3:72131919-72131938 Msa0470080:intron 40.0%
ACTCATCCAACCTACTTCTA+AGG - chr3_3:72131956-72131975 None:intergenic 40.0%
! TTAGAAGTAGGTTGGATGAG+TGG + chr3_3:72131955-72131974 Msa0470080:intron 40.0%
!! GTTGAAGGCTTTAAGCATAG+AGG - chr3_3:72132237-72132256 None:intergenic 40.0%
TTCCTCCTCTTGAATCTTGA+GGG - chr3_3:72132332-72132351 None:intergenic 40.0%
TCAAGATTCAAGAGGAGGAA+GGG + chr3_3:72132332-72132351 Msa0470080:intron 40.0%
AGTTCAGCAGTGAAGCATAA+AGG - chr3_3:72132382-72132401 None:intergenic 40.0%
GAGTGCATGTATACAACAAG+GGG - chr3_3:72132448-72132467 None:intergenic 40.0%
! GACAGAGTACTTCAGTAACA+AGG - chr3_3:72132508-72132527 None:intergenic 40.0%
ACGCTCTTTGTTGCTAAATG+CGG + chr3_3:72132657-72132676 Msa0470080:CDS 40.0%
ATGATGCTCAGCTTAAGACT+GGG + chr3_3:72132923-72132942 Msa0470080:CDS 40.0%
!!! GCAGCTTTTGGTGTTGTTAA+AGG + chr3_3:72132952-72132971 Msa0470080:CDS 40.0%
AATCAACTCACTGTGCTCTA+AGG + chr3_3:72132976-72132995 Msa0470080:intron 40.0%
TCGAAGTTCAGTTCAAGAAG+TGG - chr3_3:72133171-72133190 None:intergenic 40.0%
AAAGCTTATTAGCGTATGCC+TGG + chr3_3:72133190-72133209 Msa0470080:CDS 40.0%
AAGCTTATTAGCGTATGCCT+GGG + chr3_3:72133191-72133210 Msa0470080:CDS 40.0%
CACATAAATAGTTCCATCCC+AGG - chr3_3:72133211-72133230 None:intergenic 40.0%
GAAGACTATACTCACCACAT+TGG + chr3_3:72133450-72133469 Msa0470080:three_prime_UTR 40.0%
CTATGCTGCATGACTACAAT+GGG + chr3_3:72133551-72133570 Msa0470080:three_prime_UTR 40.0%
ATGCATGAGCTGAACTTTCT+TGG + chr3_3:72133576-72133595 Msa0470080:three_prime_UTR 40.0%
AGCTGAACTTTCTTGGAAGA+GGG + chr3_3:72133583-72133602 Msa0470080:three_prime_UTR 40.0%
TCTCTCTGAATACTTTGCTG+AGG - chr3_3:72133691-72133710 None:intergenic 40.0%
ATTCAGAGAGAATGGAAGAG+AGG + chr3_3:72133700-72133719 Msa0470080:three_prime_UTR 40.0%
CATGCTGGAAATGGATAGTT+TGG + chr3_3:72133830-72133849 Msa0470080:three_prime_UTR 40.0%
CCAATGTCCTGATTAAGACA+TGG - chr3_3:72133907-72133926 None:intergenic 40.0%
CCATGTCTTAATCAGGACAT+TGG + chr3_3:72133904-72133923 Msa0470080:three_prime_UTR 40.0%
!! GAACGCACTTTCTGGAATGA+TGG + chr3_3:72130925-72130944 Msa0470080:CDS 45.0%
ACTTCAAGGAAACGCTTTCC+AGG + chr3_3:72131105-72131124 Msa0470080:CDS 45.0%
TAAATAGCGTAGCAGGCAAC+CGG + chr3_3:72131415-72131434 Msa0470080:intron 45.0%
! AATGTGGTGACTAGTTGTGC+CGG - chr3_3:72131437-72131456 None:intergenic 45.0%
AGAGAGAGAGAGAGAGAATG+TGG - chr3_3:72131453-72131472 None:intergenic 45.0%
! TGGTAGATGGTGGTAACTAG+TGG - chr3_3:72131508-72131527 None:intergenic 45.0%
! CAGGTGGTGTGGTATTTTAC+CGG - chr3_3:72131562-72131581 None:intergenic 45.0%
! CGTGTAACCTTTGTTTGTGG+CGG + chr3_3:72131713-72131732 Msa0470080:intron 45.0%
! TTTTCGACCGCCACAAACAA+AGG - chr3_3:72131723-72131742 None:intergenic 45.0%
AACGATGAAGGAGATCCATG+GGG + chr3_3:72131920-72131939 Msa0470080:intron 45.0%
CCTTCACATTGCTCAACTAG+TGG - chr3_3:72132090-72132109 None:intergenic 45.0%
CCACTAGTTGAGCAATGTGA+AGG + chr3_3:72132087-72132106 Msa0470080:intron 45.0%
GAAGGAAAGAGTTTGCCCAT+AGG + chr3_3:72132105-72132124 Msa0470080:intron 45.0%
TTAAGCATAGAGGTCTGGAC+TGG - chr3_3:72132227-72132246 None:intergenic 45.0%
!! AGGCTTTAAGCATAGAGGTC+TGG - chr3_3:72132232-72132251 None:intergenic 45.0%
TACCCTCAAGATTCAAGAGG+AGG + chr3_3:72132327-72132346 Msa0470080:intron 45.0%
CTTCCTCCTCTTGAATCTTG+AGG - chr3_3:72132333-72132352 None:intergenic 45.0%
CTCAAGATTCAAGAGGAGGA+AGG + chr3_3:72132331-72132350 Msa0470080:intron 45.0%
CAAGATTCAAGAGGAGGAAG+GGG + chr3_3:72132333-72132352 Msa0470080:intron 45.0%
AGAGGCAAAAGCTATGCTTG+AGG + chr3_3:72132627-72132646 Msa0470080:CDS 45.0%
CGCTCTTTGTTGCTAAATGC+GGG + chr3_3:72132658-72132677 Msa0470080:CDS 45.0%
TCTTTGTTGCTAAATGCGGG+AGG + chr3_3:72132661-72132680 Msa0470080:CDS 45.0%
TGAAGAACGAGGTGCATTCA+TGG + chr3_3:72132687-72132706 Msa0470080:CDS 45.0%
GAAGAACGAGGTGCATTCAT+GGG + chr3_3:72132688-72132707 Msa0470080:CDS 45.0%
AAGAACGAGGTGCATTCATG+GGG + chr3_3:72132689-72132708 Msa0470080:CDS 45.0%
TGATCGGGATGAAGAGAGAT+TGG + chr3_3:72132729-72132748 Msa0470080:CDS 45.0%
GGATGAAGAGAGATTGGAGT+CGG + chr3_3:72132735-72132754 Msa0470080:CDS 45.0%
GATGATGCTCAGCTTAAGAC+TGG + chr3_3:72132922-72132941 Msa0470080:CDS 45.0%
TGATGCTCAGCTTAAGACTG+GGG + chr3_3:72132924-72132943 Msa0470080:CDS 45.0%
CTGAAACAAAACCGTGTTGC+AGG + chr3_3:72133123-72133142 Msa0470080:intron 45.0%
TTATTAGCGTATGCCTGGGA+TGG + chr3_3:72133195-72133214 Msa0470080:CDS 45.0%
GCTATGCTGCATGACTACAA+TGG + chr3_3:72133550-72133569 Msa0470080:three_prime_UTR 45.0%
GAGCTGAACTTTCTTGGAAG+AGG + chr3_3:72133582-72133601 Msa0470080:three_prime_UTR 45.0%
GCTGAACTTTCTTGGAAGAG+GGG + chr3_3:72133584-72133603 Msa0470080:three_prime_UTR 45.0%
TCTGAATACTTTGCTGAGGC+AGG - chr3_3:72133687-72133706 None:intergenic 45.0%
CTGGAAATGGATAGTTTGGG+AGG + chr3_3:72133834-72133853 Msa0470080:three_prime_UTR 45.0%
TTTCTTATCCTCCGCAGCGT+GGG - chr3_3:72130742-72130761 None:intergenic 50.0%
!!! CGTTTTTTGTCATGCAGCGC+CGG + chr3_3:72131540-72131559 Msa0470080:intron 50.0%
ACGGAGATTCCTAGTGACCA+TGG + chr3_3:72131776-72131795 Msa0470080:intron 50.0%
! AGGTTGGCTGCCTTAGAAGT+AGG + chr3_3:72131943-72131962 Msa0470080:intron 50.0%
TGGCTGCCTTAGAAGTAGGT+TGG + chr3_3:72131947-72131966 Msa0470080:intron 50.0%
CAGCAGTGAAGCATAAAGGC+CGG - chr3_3:72132378-72132397 None:intergenic 50.0%
GCATCTATCTCTGCCCTTGT+TGG + chr3_3:72132766-72132785 Msa0470080:CDS 50.0%
! CCCTGACAAAGTGCCAACAA+GGG - chr3_3:72132782-72132801 None:intergenic 50.0%
CCCTTGTTGGCACTTTGTCA+GGG + chr3_3:72132779-72132798 Msa0470080:CDS 50.0%
TGGCCTGAGTGAAGCATATG+GGG - chr3_3:72132807-72132826 None:intergenic 50.0%
GTGGCCTGAGTGAAGCATAT+GGG - chr3_3:72132808-72132827 None:intergenic 50.0%
CAGAGAGAAGCAGCTGAGTT+GGG - chr3_3:72132834-72132853 None:intergenic 50.0%
ACAGAGAGAAGCAGCTGAGT+TGG - chr3_3:72132835-72132854 None:intergenic 50.0%
AACTCAGCTGCTTCTCTCTG+TGG + chr3_3:72132834-72132853 Msa0470080:CDS 50.0%
GGATTGCAAGACCTGCAACA+CGG - chr3_3:72133137-72133156 None:intergenic 50.0%
CGGCATGCAACTTTCCAATG+TGG - chr3_3:72133467-72133486 None:intergenic 50.0%
CAGAGAGAATGGAAGAGAGG+AGG + chr3_3:72133703-72133722 Msa0470080:three_prime_UTR 50.0%
CTTTCTTATCCTCCGCAGCG+TGG - chr3_3:72130743-72130762 None:intergenic 55.0%
CAGCAGCAGCAAGAACTCAG+AGG + chr3_3:72130886-72130905 Msa0470080:CDS 55.0%
CAACTGCAGAGACAAGTCCC+TGG - chr3_3:72131296-72131315 None:intergenic 55.0%
TGGCATGGCAGCATAGCAGT+AGG - chr3_3:72131385-72131404 None:intergenic 55.0%
CAAGTGATGGTCAGGTGGTG+TGG - chr3_3:72131573-72131592 None:intergenic 55.0%
GATGAAGGAGATCCATGGGG+AGG + chr3_3:72131923-72131942 Msa0470080:intron 55.0%
AAGGAGATCCATGGGGAGGT+TGG + chr3_3:72131927-72131946 Msa0470080:intron 55.0%
TCAAGAGGAGGAAGGGGAGT+AGG + chr3_3:72132339-72132358 Msa0470080:intron 55.0%
CAAGAGGAGGAAGGGGAGTA+GGG + chr3_3:72132340-72132359 Msa0470080:intron 55.0%
CAGTGAAGCATAAAGGCCGG+AGG - chr3_3:72132375-72132394 None:intergenic 55.0%
GCCCTTGTTGGCACTTTGTC+AGG + chr3_3:72132778-72132797 Msa0470080:CDS 55.0%
! GCCCTGACAAAGTGCCAACA+AGG - chr3_3:72132783-72132802 None:intergenic 55.0%
GCTCCCCATATGCTTCACTC+AGG + chr3_3:72132801-72132820 Msa0470080:CDS 55.0%
GGTGGCCTGAGTGAAGCATA+TGG - chr3_3:72132809-72132828 None:intergenic 55.0%
!! AAGCAGCTGAGTTGGGTTGG+TGG - chr3_3:72132827-72132846 None:intergenic 55.0%
! GAGAAGCAGCTGAGTTGGGT+TGG - chr3_3:72132830-72132849 None:intergenic 55.0%
! ACTGGGGTTGCAGCAGCTTT+TGG + chr3_3:72132940-72132959 Msa0470080:CDS 55.0%
GGTCTTGCAATCCTAAGCGC+TGG + chr3_3:72133144-72133163 Msa0470080:intron 55.0%
CAAGAAGTGGTCCAGCGCTT+AGG - chr3_3:72133158-72133177 None:intergenic 55.0%
TTATCCTCCGCAGCGTGGGT+GGG - chr3_3:72130738-72130757 None:intergenic 60.0%
TAAGGCAGCCAACCTCCCCA+TGG - chr3_3:72131938-72131957 None:intergenic 60.0%
CTTATCCTCCGCAGCGTGGG+TGG - chr3_3:72130739-72130758 None:intergenic 65.0%
!! GCGGGAGGTGCTGAAGAACG+AGG + chr3_3:72132676-72132695 Msa0470080:CDS 65.0%
CCTCCGCAGCGTGGGTGGGT+GGG - chr3_3:72130734-72130753 None:intergenic 75.0%
TCCTCCGCAGCGTGGGTGGG+TGG - chr3_3:72130735-72130754 None:intergenic 75.0%
! CCCACCCACCCACGCTGCGG+AGG + chr3_3:72130731-72130750 Msa0470080:five_prime_UTR 80.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 72130729 72134002 72130729 ID=Msa0470080;Name=Msa0470080
chr3_3 mRNA 72130729 72134002 72130729 ID=Msa0470080-mRNA-1;Parent=Msa0470080;Name=Msa0470080-mRNA-1;_AED=0.11;_eAED=0.11;_QI=44|1|1|1|1|1|3|673|303
chr3_3 exon 72130729 72131126 72130729 ID=Msa0470080-mRNA-1:exon:17819;Parent=Msa0470080-mRNA-1
chr3_3 exon 72132601 72132973 72132601 ID=Msa0470080-mRNA-1:exon:17820;Parent=Msa0470080-mRNA-1
chr3_3 exon 72133145 72134002 72133145 ID=Msa0470080-mRNA-1:exon:17821;Parent=Msa0470080-mRNA-1
chr3_3 five_prime_UTR 72130729 72130772 72130729 ID=Msa0470080-mRNA-1:five_prime_utr;Parent=Msa0470080-mRNA-1
chr3_3 CDS 72130773 72131126 72130773 ID=Msa0470080-mRNA-1:cds;Parent=Msa0470080-mRNA-1
chr3_3 CDS 72132601 72132973 72132601 ID=Msa0470080-mRNA-1:cds;Parent=Msa0470080-mRNA-1
chr3_3 CDS 72133145 72133329 72133145 ID=Msa0470080-mRNA-1:cds;Parent=Msa0470080-mRNA-1
chr3_3 three_prime_UTR 72133330 72134002 72133330 ID=Msa0470080-mRNA-1:three_prime_utr;Parent=Msa0470080-mRNA-1
Gene Sequence

>Msa0470080

ATGATGAACGTTATGATGATTTCCACTTCCATTATTAGATTTACGCTTCCTCCTTCTCATTCTCCTTTGTTAATTAAAACGTTTCATCCATCGTTGAAAATGAAATGTCGCTGCAGCAGCAGCAAGAACTCAGAGGAGAACAACGATTTGAAGAACGCACTTTCTGGAATGATGGGTGAGCAAGTTGAACAACTCTTAAGCAGAGAAGAGAACAAAGTTTTATTCGATAATTTACAGAAAGCCTCTCAAAGAGTTGAGATTGCTAAGACACAACTCGCTTTCATTCAGAAACAAGAACTTGCTCTTAAACACTTTAAGGATTACACTCAACAACTTCAAGGAAACGCTTTCCAGATTGCAGAAAGTCAAAGAGAAATTTCAGAGGCAAAAGCTATGCTTGAGGAAGCAGAACGCTCTTTGTTGCTAAATGCGGGAGGTGCTGAAGAACGAGGTGCATTCATGGGGATGAAAAGTGAAGAAGTTGATCGGGATGAAGAGAGATTGGAGTCGGTAAAAGCAGCATCTATCTCTGCCCTTGTTGGCACTTTGTCAGGGCTCCCCATATGCTTCACTCAGGCCACCAACCCAACTCAGCTGCTTCTCTCTGTGGCAATCAATTTCGTATGTTGTGCATTGTTTGGAGTGACTTTTCGATATACCGTAAGGAGAAACTTGGATGATGCTCAGCTTAAGACTGGGGTTGCAGCAGCTTTTGGTGTTGTTAAAGGTCTTGCAATCCTAAGCGCTGGACCACTTCTTGAACTGAACTTCGAAAGCTTATTAGCGTATGCCTGGGATGGAACTATTTATGTGTCTGAGAATCTTATAATTTTTGTTTCTGCTGCTGTTAGTCTAGATTATTGTTTAAAGACAAGACTTTTGAGCCCTTTTCCAATTGATAAAACACGTTAG

Protein sequence

>Msa0470080

MMNVMMISTSIIRFTLPPSHSPLLIKTFHPSLKMKCRCSSSKNSEENNDLKNALSGMMGEQVEQLLSREENKVLFDNLQKASQRVEIAKTQLAFIQKQELALKHFKDYTQQLQGNAFQIAESQREISEAKAMLEEAERSLLLNAGGAEERGAFMGMKSEEVDRDEERLESVKAASISALVGTLSGLPICFTQATNPTQLLLSVAINFVCCALFGVTFRYTVRRNLDDAQLKTGVAAAFGVVKGLAILSAGPLLELNFESLLAYAWDGTIYVSENLIIFVSAAVSLDYCLKTRLLSPFPIDKTR*