AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0392120


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0392120 MtrunA17_Chr3g0077271 91.060 302 22 3 5 303 1 300 0.0 532
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0392120 AT4G24090.1 50.903 277 123 3 28 298 36 305 5.53e-85 258

Find 95 sgRNAs with CRISPR-Local

Find 224 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTTGCTCTTAAACACTTTA+AGG 0.074175 3_2:+5107391 Msa0392120:CDS
GATTTGAAGAACGCACTTTC+TGG 0.183220 3_2:+5107239 Msa0392120:CDS
GCCCTTGTTGGCACTTTGTC+AGG 0.205650 3_2:+5109396 Msa0392120:CDS
ATGATAATCGGAAAATTAAT+TGG 0.244930 3_2:-5109958 None:intergenic
TCCGATTATCATAGCGTAAA+TGG 0.252998 3_2:+5109969 Msa0392120:three_prime_UTR
CATGCTGGAAATGATTAGTT+TGG 0.289682 3_2:+5110450 Msa0392120:three_prime_UTR
ACTGGGGTTGCAGCAGCTTT+TGG 0.298292 3_2:+5109558 Msa0392120:CDS
ATGCATGAGCTGAACTTTCT+TGG 0.305829 3_2:+5110196 Msa0392120:three_prime_UTR
AATAAGGCACTCGTAGAAAA+AGG 0.328136 3_2:-5110559 None:intergenic
GCATCTATCTCTGCCCTTGT+TGG 0.365023 3_2:+5109384 Msa0392120:CDS
TCCATTTACGCTATGATAAT+CGG 0.383249 3_2:-5109970 None:intergenic
TTGCATACAACTCAAAAGTA+TGG 0.383264 3_2:-5110361 None:intergenic
GCACAAAGCAGTCTAAAATA+AGG 0.388633 3_2:-5110575 None:intergenic
TGATCGGGATGAAGAGAGAT+TGG 0.389359 3_2:+5109347 Msa0392120:CDS
TTCGTATGTTGTGCATTGTT+TGG 0.390224 3_2:+5109483 Msa0392120:CDS
ACTTCAAGGAAACGCTTTCC+AGG 0.393652 3_2:+5107427 Msa0392120:CDS
ATGCTGGAAATGATTAGTTT+GGG 0.398322 3_2:+5110451 Msa0392120:three_prime_UTR
AGGAAGCGTAAATCTAATAA+TGG 0.401341 3_2:-5107123 None:intergenic
CCGCAGCGTGGGTGGGTGGG+TGG 0.405668 3_2:-5107050 None:intergenic
CCCTTGTTGGCACTTTGTCA+GGG 0.409622 3_2:+5109397 Msa0392120:CDS
AATATTAGAAGTGTTTGAAA+AGG 0.416395 3_2:+5110144 Msa0392120:three_prime_UTR
TCCTCCGCAGCGTGGGTGGG+TGG 0.430777 3_2:-5107054 None:intergenic
CCTCCGCAGCGTGGGTGGGT+GGG 0.434745 3_2:-5107053 None:intergenic
ATCATCCAAGTTTCTCCTTA+CGG 0.436352 3_2:-5109523 None:intergenic
CTTATCCTCCGCAGCGTGGG+TGG 0.436672 3_2:-5107058 None:intergenic
CGCTCTTTGTTGCTAAATGC+GGG 0.443266 3_2:+5109276 Msa0392120:CDS
CAGAGAGAAGCAGCTGAGTT+GGG 0.445724 3_2:-5109449 None:intergenic
AGCAAAGTATTCAGAGAGAA+TGG 0.446842 3_2:+5110312 Msa0392120:three_prime_UTR
ACAGAGAGAAGCAGCTGAGT+TGG 0.447865 3_2:-5109450 None:intergenic
CAAGAAGTGGTCCAGCGCTT+AGG 0.448672 3_2:-5109775 None:intergenic
TGAAGAACGAGGTGCATTCA+TGG 0.449382 3_2:+5109305 Msa0392120:CDS
AAAGCTTATTAGCGTATGCC+TGG 0.453590 3_2:+5109810 Msa0392120:CDS
CGCAGCGTGGGTGGGTGGGT+GGG 0.455282 3_2:-5107049 None:intergenic
ATATTAGAAGTGTTTGAAAA+GGG 0.465590 3_2:+5110145 Msa0392120:three_prime_UTR
GAAAAGTGAAGAAGTTGATC+GGG 0.470593 3_2:+5109332 Msa0392120:CDS
AGCTGAACTTTCTTGGAAGA+GGG 0.470679 3_2:+5110203 Msa0392120:three_prime_UTR
GATGATGCTCAGCTTAAGAC+TGG 0.472044 3_2:+5109540 Msa0392120:CDS
TCTGAATACTTTGCTGAGGC+AGG 0.475212 3_2:-5110304 None:intergenic
CTATGCTGCATGACTACAAT+GGG 0.476845 3_2:+5110171 Msa0392120:three_prime_UTR
CGTAAATCTAATAATGGAAG+TGG 0.481151 3_2:-5107117 None:intergenic
GAGCTGAACTTTCTTGGAAG+AGG 0.484465 3_2:+5110202 Msa0392120:three_prime_UTR
GTTCTCAGATTATTTCATGC+TGG 0.485230 3_2:+5110435 Msa0392120:three_prime_UTR
GGTGGCCTGAGTGAAGCATA+TGG 0.489258 3_2:-5109424 None:intergenic
ATTCAGAGAGAATGGAAGAG+AGG 0.496321 3_2:+5110320 Msa0392120:three_prime_UTR
GATTACACTCAACAACTTCA+AGG 0.499214 3_2:+5107413 Msa0392120:CDS
GAAGAACGAGGTGCATTCAT+GGG 0.509604 3_2:+5109306 Msa0392120:CDS
CCATGTCTTAATCAGGACAT+TGG 0.510699 3_2:+5110523 Msa0392120:three_prime_UTR
TTATCCTCCGCAGCGTGGGT+GGG 0.511177 3_2:-5107057 None:intergenic
GAACGCACTTTCTGGAATGA+TGG 0.511508 3_2:+5107247 Msa0392120:CDS
AACAAAGGAGAATGAGAAGG+AGG 0.522216 3_2:-5107143 None:intergenic
GAGAAGCAGCTGAGTTGGGT+TGG 0.522960 3_2:-5109445 None:intergenic
TTTCTTATCCTCCGCAGCGT+GGG 0.524085 3_2:-5107061 None:intergenic
GCCCTGACAAAGTGCCAACA+AGG 0.524369 3_2:-5109398 None:intergenic
AAGCAGCTGAGTTGGGTTGG+TGG 0.530246 3_2:-5109442 None:intergenic
GTGGCCTGAGTGAAGCATAT+GGG 0.535009 3_2:-5109423 None:intergenic
CCCACCCACCCACGCTGCGG+AGG 0.537376 3_2:+5107053 Msa0392120:five_prime_UTR
GGTCTTGCAATCCTAAGCGC+TGG 0.540628 3_2:+5109764 Msa0392120:intron
TGAAAAGTGAAGAAGTTGAT+CGG 0.542077 3_2:+5109331 Msa0392120:CDS
ATTAACAAAGGAGAATGAGA+AGG 0.542089 3_2:-5107146 None:intergenic
TCCTGATTAAGACATGGAAA+AGG 0.548915 3_2:-5110517 None:intergenic
AACGCACTTTCTGGAATGAT+GGG 0.549369 3_2:+5107248 Msa0392120:CDS
CAATTGATAAAACACGTTAG+CGG 0.555580 3_2:+5109930 Msa0392120:CDS
CAGAGAGAATGGAAGAGAGG+AGG 0.557632 3_2:+5110323 Msa0392120:three_prime_UTR
CACATAAATAGTTCCATCCC+AGG 0.559029 3_2:-5109828 None:intergenic
AGCAATCTCAACTCTTTGAG+AGG 0.560228 3_2:-5107336 None:intergenic
TCGAAGTTCAGTTCAAGAAG+TGG 0.560534 3_2:-5109788 None:intergenic
ATATACCGTAAGGAGAAACT+TGG 0.564974 3_2:+5109518 Msa0392120:CDS
TTAGAAGTGTTTGAAAAGGG+AGG 0.572869 3_2:+5110148 Msa0392120:three_prime_UTR
CTTTCTTATCCTCCGCAGCG+TGG 0.573836 3_2:-5107062 None:intergenic
ACGCTCTTTGTTGCTAAATG+CGG 0.580608 3_2:+5109275 Msa0392120:CDS
TGATTAAGACATGGAAAAGG+TGG 0.592272 3_2:-5110514 None:intergenic
ATGATGCTCAGCTTAAGACT+GGG 0.594958 3_2:+5109541 Msa0392120:CDS
AACTCAGCTGCTTCTCTCTG+TGG 0.595669 3_2:+5109452 Msa0392120:CDS
GCTGAACTTTCTTGGAAGAG+GGG 0.596838 3_2:+5110204 Msa0392120:three_prime_UTR
GCTATGCTGCATGACTACAA+TGG 0.600401 3_2:+5110170 Msa0392120:three_prime_UTR
CCAATGTCCTGATTAAGACA+TGG 0.601846 3_2:-5110523 None:intergenic
GCTCCCCATATGCTTCACTC+AGG 0.614386 3_2:+5109419 Msa0392120:CDS
AAGCTTATTAGCGTATGCCT+GGG 0.615492 3_2:+5109811 Msa0392120:CDS
ATTTACGTTTGAAATCACTA+CGG 0.616304 3_2:-5110104 None:intergenic
CTGGAAATGATTAGTTTGGG+AGG 0.616878 3_2:+5110454 Msa0392120:three_prime_UTR
TTATTAGCGTATGCCTGGGA+TGG 0.620264 3_2:+5109815 Msa0392120:CDS
CCACCCACCCACCCACGCTG+CGG 0.621316 3_2:+5107050 None:intergenic
GGATGAAGAGAGATTGGAGT+CGG 0.627110 3_2:+5109353 Msa0392120:CDS
TCTCTCTGAATACTTTGCTG+AGG 0.629890 3_2:-5110308 None:intergenic
AAGTCAAAGAGAAATTTCAG+AGG 0.639606 3_2:+5109227 Msa0392120:CDS
TCTTTGTTGCTAAATGCGGG+AGG 0.641623 3_2:+5109279 Msa0392120:CDS
AAGAACGAGGTGCATTCATG+GGG 0.641964 3_2:+5109307 Msa0392120:CDS
GAAGACTATACTCACCACAT+TGG 0.647884 3_2:+5110070 Msa0392120:three_prime_UTR
TGGCCTGAGTGAAGCATATG+GGG 0.653318 3_2:-5109422 None:intergenic
CAGCAGCAGCAAGAACTCAG+AGG 0.673438 3_2:+5107208 Msa0392120:CDS
AGAGGCAAAAGCTATGCTTG+AGG 0.674852 3_2:+5109245 Msa0392120:CDS
CCCTGACAAAGTGCCAACAA+GGG 0.676499 3_2:-5109397 None:intergenic
CGGCATGCAACTTTCCAATG+TGG 0.695904 3_2:-5110084 None:intergenic
GCGGGAGGTGCTGAAGAACG+AGG 0.698522 3_2:+5109294 Msa0392120:CDS
TGATGCTCAGCTTAAGACTG+GGG 0.707538 3_2:+5109542 Msa0392120:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTGAATACTTTTTTTAAAA+TGG + chr3_2:5107833-5107852 Msa0392120:intron 10.0%
!!! AATTTGCTATTTTGTAAATT+TGG + chr3_2:5107769-5107788 Msa0392120:intron 15.0%
!!! ATTTGCTATTTTGTAAATTT+GGG + chr3_2:5107770-5107789 Msa0392120:intron 15.0%
!!! AATACTTTTTTTAAAATGGT+CGG + chr3_2:5107837-5107856 Msa0392120:intron 15.0%
!! AATAAATAAAATGTTAAGAG+AGG - chr3_2:5108915-5108934 None:intergenic 15.0%
!!! AATGATTATCATTTTTTGTT+TGG - chr3_2:5110050-5110069 None:intergenic 15.0%
!!! TGAAACGTTTTAATTAACAA+AGG - chr3_2:5107161-5107180 None:intergenic 20.0%
!!! NNNNNNNNGTTACTTTTACC+TGG - chr3_2:5107448-5107467 None:intergenic 20.0%
!!! ATATTTAAGACTCTATTAGA+CGG + chr3_2:5107704-5107723 Msa0392120:intron 20.0%
!!! TTTGCTATTTTGTAAATTTG+GGG + chr3_2:5107771-5107790 Msa0392120:intron 20.0%
!! TTATTAAGTGTTAGACAATT+TGG - chr3_2:5107799-5107818 None:intergenic 20.0%
!!! ATACTTTTTTTAAAATGGTC+GGG + chr3_2:5107838-5107857 Msa0392120:intron 20.0%
!!! TGATTTTCAAAGTAAAGTAT+TGG - chr3_2:5108235-5108254 None:intergenic 20.0%
!!! AATACTTTACTTTGAAAATC+AGG + chr3_2:5108234-5108253 Msa0392120:intron 20.0%
!!! TGACAAATTTTAAAGAGAAA+CGG + chr3_2:5108380-5108399 Msa0392120:intron 20.0%
!! AGAAAATAGATAGTAGTAAA+TGG + chr3_2:5108490-5108509 Msa0392120:intron 20.0%
!! ATTAATAAAATTAAGCAACG+TGG + chr3_2:5108681-5108700 Msa0392120:intron 20.0%
!! TTAATAAAATTAAGCAACGT+GGG + chr3_2:5108682-5108701 Msa0392120:intron 20.0%
!! AAATATTAGAGTAATCCTAT+GGG - chr3_2:5108741-5108760 None:intergenic 20.0%
!! AAAATATTAGAGTAATCCTA+TGG - chr3_2:5108742-5108761 None:intergenic 20.0%
!! ATGATAATCGGAAAATTAAT+TGG - chr3_2:5109961-5109980 None:intergenic 20.0%
!!! AATATTAGAAGTGTTTGAAA+AGG + chr3_2:5110144-5110163 Msa0392120:three_prime_UTR 20.0%
!!! ATATTAGAAGTGTTTGAAAA+GGG + chr3_2:5110145-5110164 Msa0392120:three_prime_UTR 20.0%
!!! TACTTTTTTTAAAATGGTCG+GGG + chr3_2:5107839-5107858 Msa0392120:intron 25.0%
! ATTTAGTTAGAATAATGGCA+TGG - chr3_2:5108029-5108048 None:intergenic 25.0%
! ACGCTATTTAGTTAGAATAA+TGG - chr3_2:5108034-5108053 None:intergenic 25.0%
!!! TTTTCAAAGTAAAGTATTGG+AGG - chr3_2:5108232-5108251 None:intergenic 25.0%
! AAATAGATAGTAGTAAATGG+TGG + chr3_2:5108493-5108512 Msa0392120:intron 25.0%
! AAAGTTTATCCTGAATGAAA+GGG - chr3_2:5108801-5108820 None:intergenic 25.0%
! TAAAGTTTATCCTGAATGAA+AGG - chr3_2:5108802-5108821 None:intergenic 25.0%
!!! AAAAAGTACTTATGATCATC+TGG - chr3_2:5109102-5109121 None:intergenic 25.0%
!! GTGTTTTATCAATTGGAAAA+GGG - chr3_2:5109925-5109944 None:intergenic 25.0%
!! ATTTACGTTTGAAATCACTA+CGG - chr3_2:5110107-5110126 None:intergenic 25.0%
! CGTAAATCTAATAATGGAAG+TGG - chr3_2:5107120-5107139 None:intergenic 30.0%
! AGGAAGCGTAAATCTAATAA+TGG - chr3_2:5107126-5107145 None:intergenic 30.0%
ATTAACAAAGGAGAATGAGA+AGG - chr3_2:5107149-5107168 None:intergenic 30.0%
ACTTGCTCTTAAACACTTTA+AGG + chr3_2:5107391-5107410 Msa0392120:CDS 30.0%
ACGTATATAAGCTATCTTGT+CGG + chr3_2:5107619-5107638 Msa0392120:intron 30.0%
AAAAAACGACATTTGATGCT+TGG - chr3_2:5108151-5108170 None:intergenic 30.0%
! AGAGTAAGTTTTACAAGTGA+TGG - chr3_2:5108209-5108228 None:intergenic 30.0%
CAAAAATGTCAAAATGAGAG+TGG + chr3_2:5108437-5108456 Msa0392120:intron 30.0%
TGAGCAAAAATTAACGATGA+AGG + chr3_2:5108531-5108550 Msa0392120:intron 30.0%
! GATATAAGACTAGTTGTTGA+AGG - chr3_2:5108870-5108889 None:intergenic 30.0%
TTGTATACATGCACTCTTTA+TGG + chr3_2:5109070-5109089 Msa0392120:intron 30.0%
! CTGTCTTTATTTGTCAACAA+AGG + chr3_2:5109141-5109160 Msa0392120:intron 30.0%
AAGTCAAAGAGAAATTTCAG+AGG + chr3_2:5109227-5109246 Msa0392120:CDS 30.0%
! TGAAAAGTGAAGAAGTTGAT+CGG + chr3_2:5109331-5109350 Msa0392120:CDS 30.0%
! ATTTTACAGACAAGTCAAGT+TGG + chr3_2:5109631-5109650 Msa0392120:intron 30.0%
! TTTTCCCTTCATTTCTTTTG+TGG + chr3_2:5109675-5109694 Msa0392120:intron 30.0%
! TTTCCCTTCATTTCTTTTGT+GGG + chr3_2:5109676-5109695 Msa0392120:intron 30.0%
! CGTGTTTTATCAATTGGAAA+AGG - chr3_2:5109926-5109945 None:intergenic 30.0%
CAATTGATAAAACACGTTAG+CGG + chr3_2:5109930-5109949 Msa0392120:CDS 30.0%
TCCATTTACGCTATGATAAT+CGG - chr3_2:5109973-5109992 None:intergenic 30.0%
!!! ATTTTTTGTTTGGCGTTTGA+AGG - chr3_2:5110040-5110059 None:intergenic 30.0%
! AGGGGTTGAATATATTTTCA+TGG + chr3_2:5110222-5110241 Msa0392120:three_prime_UTR 30.0%
! GGGGTTGAATATATTTTCAT+GGG + chr3_2:5110223-5110242 Msa0392120:three_prime_UTR 30.0%
! TGAATATATTTTCATGGGTG+AGG + chr3_2:5110228-5110247 Msa0392120:three_prime_UTR 30.0%
! GAATATATTTTCATGGGTGA+GGG + chr3_2:5110229-5110248 Msa0392120:three_prime_UTR 30.0%
TTGCATACAACTCAAAAGTA+TGG - chr3_2:5110364-5110383 None:intergenic 30.0%
!! ATGCTGGAAATGATTAGTTT+GGG + chr3_2:5110451-5110470 Msa0392120:three_prime_UTR 30.0%
! CGACATTTCATTTTCAACGA+TGG - chr3_2:5107185-5107204 None:intergenic 35.0%
GATTACACTCAACAACTTCA+AGG + chr3_2:5107413-5107432 Msa0392120:CDS 35.0%
AACGCTAAAATTGATACACC+AGG + chr3_2:5107904-5107923 Msa0392120:intron 35.0%
ACGCTAAAATTGATACACCA+GGG + chr3_2:5107905-5107924 Msa0392120:intron 35.0%
TTCTAACTAAATAGCGTAGC+AGG + chr3_2:5108037-5108056 Msa0392120:intron 35.0%
! AAGTTTTACAAGTGATGGTC+AGG - chr3_2:5108204-5108223 None:intergenic 35.0%
TGTTCTACTTACATCAACCA+TGG - chr3_2:5108419-5108438 None:intergenic 35.0%
TAGTAGTAAATGGTGGTCAA+AGG + chr3_2:5108500-5108519 Msa0392120:intron 35.0%
TACGCATAGAACCAATTAAC+AGG + chr3_2:5108652-5108671 Msa0392120:intron 35.0%
TTAATCACTCGCCTGTTAAT+TGG - chr3_2:5108666-5108685 None:intergenic 35.0%
! TTTTTCTTGCCCTTTCATTC+AGG + chr3_2:5108789-5108808 Msa0392120:intron 35.0%
!! CTTGAATCTTGAGGGTATTA+TGG - chr3_2:5108942-5108961 None:intergenic 35.0%
TAATACCCTCAAGATTCAAG+AGG + chr3_2:5108942-5108961 Msa0392120:intron 35.0%
AGTAGGGATAAAATTTCCTC+CGG + chr3_2:5108974-5108993 Msa0392120:intron 35.0%
AGAGTGCATGTATACAACAA+GGG - chr3_2:5109067-5109086 None:intergenic 35.0%
! AAGAGTGCATGTATACAACA+AGG - chr3_2:5109068-5109087 None:intergenic 35.0%
! GAAAAGTGAAGAAGTTGATC+GGG + chr3_2:5109332-5109351 Msa0392120:CDS 35.0%
TTCGTATGTTGTGCATTGTT+TGG + chr3_2:5109483-5109502 Msa0392120:CDS 35.0%
! TGACTTTTCGATATACCGTA+AGG + chr3_2:5109508-5109527 Msa0392120:CDS 35.0%
ATATACCGTAAGGAGAAACT+TGG + chr3_2:5109518-5109537 Msa0392120:CDS 35.0%
ATCATCCAAGTTTCTCCTTA+CGG - chr3_2:5109526-5109545 None:intergenic 35.0%
CAACCCACAAAAGAAATGAA+GGG - chr3_2:5109682-5109701 None:intergenic 35.0%
TCAACCCACAAAAGAAATGA+AGG - chr3_2:5109683-5109702 None:intergenic 35.0%
! CGCTAACGTGTTTTATCAAT+TGG - chr3_2:5109932-5109951 None:intergenic 35.0%
TCCGATTATCATAGCGTAAA+TGG + chr3_2:5109969-5109988 Msa0392120:three_prime_UTR 35.0%
!! TTAGAAGTGTTTGAAAAGGG+AGG + chr3_2:5110148-5110167 Msa0392120:three_prime_UTR 35.0%
! AGCAAAGTATTCAGAGAGAA+TGG + chr3_2:5110312-5110331 Msa0392120:three_prime_UTR 35.0%
GTTCTCAGATTATTTCATGC+TGG + chr3_2:5110435-5110454 Msa0392120:three_prime_UTR 35.0%
! CATGCTGGAAATGATTAGTT+TGG + chr3_2:5110450-5110469 Msa0392120:three_prime_UTR 35.0%
!!! TGTGTGTGAAGTTTTGTTCA+AGG + chr3_2:5110481-5110500 Msa0392120:three_prime_UTR 35.0%
TGATTAAGACATGGAAAAGG+TGG - chr3_2:5110517-5110536 None:intergenic 35.0%
! ACCTTTTCCATGTCTTAATC+AGG + chr3_2:5110516-5110535 Msa0392120:three_prime_UTR 35.0%
TCCTGATTAAGACATGGAAA+AGG - chr3_2:5110520-5110539 None:intergenic 35.0%
! AATAAGGCACTCGTAGAAAA+AGG - chr3_2:5110562-5110581 None:intergenic 35.0%
! GCACAAAGCAGTCTAAAATA+AGG - chr3_2:5110578-5110597 None:intergenic 35.0%
AACAAAGGAGAATGAGAAGG+AGG - chr3_2:5107146-5107165 None:intergenic 40.0%
GATTTGAAGAACGCACTTTC+TGG + chr3_2:5107239-5107258 Msa0392120:CDS 40.0%
!! AACGCACTTTCTGGAATGAT+GGG + chr3_2:5107248-5107267 Msa0392120:CDS 40.0%
AGCAATCTCAACTCTTTGAG+AGG - chr3_2:5107339-5107358 None:intergenic 40.0%
AGCTATCTTGTCGGAACTTA+TGG + chr3_2:5107628-5107647 Msa0392120:intron 40.0%
AAGACTCTATTAGACGGTAG+AGG + chr3_2:5107710-5107729 Msa0392120:intron 40.0%
AGACTCTATTAGACGGTAGA+GGG + chr3_2:5107711-5107730 Msa0392120:intron 40.0%
! GGTTGATGTTCTGTAATCTG+TGG + chr3_2:5107742-5107761 Msa0392120:intron 40.0%
ATATGCTCTCCCATATGCAT+CGG - chr3_2:5107871-5107890 None:intergenic 40.0%
CTGCAGTTGCATATCAAGTT+TGG + chr3_2:5107936-5107955 Msa0392120:intron 40.0%
ATTTGATGCTTGGTAGATGG+TGG - chr3_2:5108141-5108160 None:intergenic 40.0%
GACATTTGATGCTTGGTAGA+TGG - chr3_2:5108144-5108163 None:intergenic 40.0%
! TTTTACAAGTGATGGTCAGG+TGG - chr3_2:5108201-5108220 None:intergenic 40.0%
GAAATCGTAAAATCTCGCAG+TGG + chr3_2:5108290-5108309 Msa0392120:intron 40.0%
! GATCGTGTAACCTTTGTTTG+TGG + chr3_2:5108333-5108352 Msa0392120:intron 40.0%
TTACATCAACCATGGTCACT+AGG - chr3_2:5108411-5108430 None:intergenic 40.0%
TTAACGATGAAGGAGATCCA+TGG + chr3_2:5108541-5108560 Msa0392120:intron 40.0%
TAACGATGAAGGAGATCCAT+GGG + chr3_2:5108542-5108561 Msa0392120:intron 40.0%
ACTCATCCAACCTACTTCTA+AGG - chr3_2:5108579-5108598 None:intergenic 40.0%
! TTAGAAGTAGGTTGGATGAG+TGG + chr3_2:5108578-5108597 Msa0392120:intron 40.0%
!! GTTGAAGGCTTTAAGCATAG+AGG - chr3_2:5108855-5108874 None:intergenic 40.0%
TTCCTCCTCTTGAATCTTGA+GGG - chr3_2:5108950-5108969 None:intergenic 40.0%
TCAAGATTCAAGAGGAGGAA+GGG + chr3_2:5108950-5108969 Msa0392120:intron 40.0%
AGTTCAGCAGTGAAGCATAA+AGG - chr3_2:5109000-5109019 None:intergenic 40.0%
GAGTGCATGTATACAACAAG+GGG - chr3_2:5109066-5109085 None:intergenic 40.0%
! GACAGAGTACTTCAGTAACA+AGG - chr3_2:5109126-5109145 None:intergenic 40.0%
ACGCTCTTTGTTGCTAAATG+CGG + chr3_2:5109275-5109294 Msa0392120:CDS 40.0%
ATGATGCTCAGCTTAAGACT+GGG + chr3_2:5109541-5109560 Msa0392120:CDS 40.0%
!!! GCAGCTTTTGGTGTTGTTAA+AGG + chr3_2:5109570-5109589 Msa0392120:CDS 40.0%
AATCAACTCACTGTGCTCTA+AGG + chr3_2:5109594-5109613 Msa0392120:intron 40.0%
CTGAAATAAAACCGTGTTGC+AGG + chr3_2:5109743-5109762 Msa0392120:intron 40.0%
TCGAAGTTCAGTTCAAGAAG+TGG - chr3_2:5109791-5109810 None:intergenic 40.0%
AAAGCTTATTAGCGTATGCC+TGG + chr3_2:5109810-5109829 Msa0392120:CDS 40.0%
AAGCTTATTAGCGTATGCCT+GGG + chr3_2:5109811-5109830 Msa0392120:CDS 40.0%
CACATAAATAGTTCCATCCC+AGG - chr3_2:5109831-5109850 None:intergenic 40.0%
GAAGACTATACTCACCACAT+TGG + chr3_2:5110070-5110089 Msa0392120:three_prime_UTR 40.0%
CTATGCTGCATGACTACAAT+GGG + chr3_2:5110171-5110190 Msa0392120:three_prime_UTR 40.0%
ATGCATGAGCTGAACTTTCT+TGG + chr3_2:5110196-5110215 Msa0392120:three_prime_UTR 40.0%
AGCTGAACTTTCTTGGAAGA+GGG + chr3_2:5110203-5110222 Msa0392120:three_prime_UTR 40.0%
TCTCTCTGAATACTTTGCTG+AGG - chr3_2:5110311-5110330 None:intergenic 40.0%
ATTCAGAGAGAATGGAAGAG+AGG + chr3_2:5110320-5110339 Msa0392120:three_prime_UTR 40.0%
!! CTGGAAATGATTAGTTTGGG+AGG + chr3_2:5110454-5110473 Msa0392120:three_prime_UTR 40.0%
CCAATGTCCTGATTAAGACA+TGG - chr3_2:5110526-5110545 None:intergenic 40.0%
CCATGTCTTAATCAGGACAT+TGG + chr3_2:5110523-5110542 Msa0392120:three_prime_UTR 40.0%
!! GAACGCACTTTCTGGAATGA+TGG + chr3_2:5107247-5107266 Msa0392120:CDS 45.0%
ACTTCAAGGAAACGCTTTCC+AGG + chr3_2:5107427-5107446 Msa0392120:CDS 45.0%
AGACGGTAGAGGGACTATAT+TGG + chr3_2:5107721-5107740 Msa0392120:intron 45.0%
GGGTTTGATCCGATGCATAT+GGG + chr3_2:5107859-5107878 Msa0392120:intron 45.0%
! ATGGGAGAGCATATGTTGAG+AGG + chr3_2:5107877-5107896 Msa0392120:intron 45.0%
! TGGGAGAGCATATGTTGAGA+GGG + chr3_2:5107878-5107897 Msa0392120:intron 45.0%
ATCGCAGTAGGTGTGTTTGT+TGG - chr3_2:5108002-5108021 None:intergenic 45.0%
TAAATAGCGTAGCAGGCAAC+CGG + chr3_2:5108044-5108063 Msa0392120:intron 45.0%
! AATGTGGTGACTAGTTGTGC+CGG - chr3_2:5108066-5108085 None:intergenic 45.0%
AGAGAGAGAGAGAGAGAATG+TGG - chr3_2:5108082-5108101 None:intergenic 45.0%
! TGGTAGATGGTGGTAACTAG+TGG - chr3_2:5108131-5108150 None:intergenic 45.0%
!!! CGTTTTTTGTCATGCAACGC+CGG + chr3_2:5108163-5108182 Msa0392120:intron 45.0%
! CAGGTGGTGTGGTATTTTAC+CGG - chr3_2:5108185-5108204 None:intergenic 45.0%
! CGTGTAACCTTTGTTTGTGG+CGG + chr3_2:5108336-5108355 Msa0392120:intron 45.0%
! TTTTCGACCGCCACAAACAA+AGG - chr3_2:5108346-5108365 None:intergenic 45.0%
AACGATGAAGGAGATCCATG+GGG + chr3_2:5108543-5108562 Msa0392120:intron 45.0%
CCTTCACATTGCTCAACTAG+TGG - chr3_2:5108708-5108727 None:intergenic 45.0%
CCACTAGTTGAGCAATGTGA+AGG + chr3_2:5108705-5108724 Msa0392120:intron 45.0%
GAAGGAAAGAGTTTGCCCAT+AGG + chr3_2:5108723-5108742 Msa0392120:intron 45.0%
TTAAGCATAGAGGTCTGGAC+TGG - chr3_2:5108845-5108864 None:intergenic 45.0%
!! AGGCTTTAAGCATAGAGGTC+TGG - chr3_2:5108850-5108869 None:intergenic 45.0%
TACCCTCAAGATTCAAGAGG+AGG + chr3_2:5108945-5108964 Msa0392120:intron 45.0%
CTTCCTCCTCTTGAATCTTG+AGG - chr3_2:5108951-5108970 None:intergenic 45.0%
CTCAAGATTCAAGAGGAGGA+AGG + chr3_2:5108949-5108968 Msa0392120:intron 45.0%
CAAGATTCAAGAGGAGGAAG+GGG + chr3_2:5108951-5108970 Msa0392120:intron 45.0%
AGAGGCAAAAGCTATGCTTG+AGG + chr3_2:5109245-5109264 Msa0392120:CDS 45.0%
CGCTCTTTGTTGCTAAATGC+GGG + chr3_2:5109276-5109295 Msa0392120:CDS 45.0%
TCTTTGTTGCTAAATGCGGG+AGG + chr3_2:5109279-5109298 Msa0392120:CDS 45.0%
TGAAGAACGAGGTGCATTCA+TGG + chr3_2:5109305-5109324 Msa0392120:CDS 45.0%
GAAGAACGAGGTGCATTCAT+GGG + chr3_2:5109306-5109325 Msa0392120:CDS 45.0%
AAGAACGAGGTGCATTCATG+GGG + chr3_2:5109307-5109326 Msa0392120:CDS 45.0%
TGATCGGGATGAAGAGAGAT+TGG + chr3_2:5109347-5109366 Msa0392120:CDS 45.0%
GGATGAAGAGAGATTGGAGT+CGG + chr3_2:5109353-5109372 Msa0392120:CDS 45.0%
GATGATGCTCAGCTTAAGAC+TGG + chr3_2:5109540-5109559 Msa0392120:CDS 45.0%
TGATGCTCAGCTTAAGACTG+GGG + chr3_2:5109542-5109561 Msa0392120:CDS 45.0%
TTATTAGCGTATGCCTGGGA+TGG + chr3_2:5109815-5109834 Msa0392120:CDS 45.0%
GCTATGCTGCATGACTACAA+TGG + chr3_2:5110170-5110189 Msa0392120:three_prime_UTR 45.0%
GAGCTGAACTTTCTTGGAAG+AGG + chr3_2:5110202-5110221 Msa0392120:three_prime_UTR 45.0%
GCTGAACTTTCTTGGAAGAG+GGG + chr3_2:5110204-5110223 Msa0392120:three_prime_UTR 45.0%
TCTGAATACTTTGCTGAGGC+AGG - chr3_2:5110307-5110326 None:intergenic 45.0%
!!! GATTTTTTTTTTTTTTATAA+TGG + chr3_2:5108611-5108630 Msa0392120:intron 5.0%
TTTCTTATCCTCCGCAGCGT+GGG - chr3_2:5107064-5107083 None:intergenic 50.0%
GGGGTTTGATCCGATGCATA+TGG + chr3_2:5107858-5107877 Msa0392120:intron 50.0%
! GGGAGAGCATATGTTGAGAG+GGG + chr3_2:5107879-5107898 Msa0392120:intron 50.0%
ACGGAGATACCTAGTGACCA+TGG + chr3_2:5108399-5108418 Msa0392120:intron 50.0%
! AGGTTGGCTGCCTTAGAAGT+AGG + chr3_2:5108566-5108585 Msa0392120:intron 50.0%
TGGCTGCCTTAGAAGTAGGT+TGG + chr3_2:5108570-5108589 Msa0392120:intron 50.0%
CAGCAGTGAAGCATAAAGGC+CGG - chr3_2:5108996-5109015 None:intergenic 50.0%
GCATCTATCTCTGCCCTTGT+TGG + chr3_2:5109384-5109403 Msa0392120:CDS 50.0%
! CCCTGACAAAGTGCCAACAA+GGG - chr3_2:5109400-5109419 None:intergenic 50.0%
CCCTTGTTGGCACTTTGTCA+GGG + chr3_2:5109397-5109416 Msa0392120:CDS 50.0%
TGGCCTGAGTGAAGCATATG+GGG - chr3_2:5109425-5109444 None:intergenic 50.0%
GTGGCCTGAGTGAAGCATAT+GGG - chr3_2:5109426-5109445 None:intergenic 50.0%
CAGAGAGAAGCAGCTGAGTT+GGG - chr3_2:5109452-5109471 None:intergenic 50.0%
ACAGAGAGAAGCAGCTGAGT+TGG - chr3_2:5109453-5109472 None:intergenic 50.0%
AACTCAGCTGCTTCTCTCTG+TGG + chr3_2:5109452-5109471 Msa0392120:CDS 50.0%
GGATTGCAAGACCTGCAACA+CGG - chr3_2:5109757-5109776 None:intergenic 50.0%
CGGCATGCAACTTTCCAATG+TGG - chr3_2:5110087-5110106 None:intergenic 50.0%
CAGAGAGAATGGAAGAGAGG+AGG + chr3_2:5110323-5110342 Msa0392120:three_prime_UTR 50.0%
CTTTCTTATCCTCCGCAGCG+TGG - chr3_2:5107065-5107084 None:intergenic 55.0%
CAGCAGCAGCAAGAACTCAG+AGG + chr3_2:5107208-5107227 Msa0392120:CDS 55.0%
CAACTGCAGAGACAAGTCCC+TGG - chr3_2:5107925-5107944 None:intergenic 55.0%
CAAGTGATGGTCAGGTGGTG+TGG - chr3_2:5108196-5108215 None:intergenic 55.0%
GATGAAGGAGATCCATGGGG+AGG + chr3_2:5108546-5108565 Msa0392120:intron 55.0%
AAGGAGATCCATGGGGAGGT+TGG + chr3_2:5108550-5108569 Msa0392120:intron 55.0%
TCAAGAGGAGGAAGGGGAGT+AGG + chr3_2:5108957-5108976 Msa0392120:intron 55.0%
CAAGAGGAGGAAGGGGAGTA+GGG + chr3_2:5108958-5108977 Msa0392120:intron 55.0%
CAGTGAAGCATAAAGGCCGG+AGG - chr3_2:5108993-5109012 None:intergenic 55.0%
GCCCTTGTTGGCACTTTGTC+AGG + chr3_2:5109396-5109415 Msa0392120:CDS 55.0%
! GCCCTGACAAAGTGCCAACA+AGG - chr3_2:5109401-5109420 None:intergenic 55.0%
GCTCCCCATATGCTTCACTC+AGG + chr3_2:5109419-5109438 Msa0392120:CDS 55.0%
GGTGGCCTGAGTGAAGCATA+TGG - chr3_2:5109427-5109446 None:intergenic 55.0%
!! AAGCAGCTGAGTTGGGTTGG+TGG - chr3_2:5109445-5109464 None:intergenic 55.0%
! GAGAAGCAGCTGAGTTGGGT+TGG - chr3_2:5109448-5109467 None:intergenic 55.0%
! ACTGGGGTTGCAGCAGCTTT+TGG + chr3_2:5109558-5109577 Msa0392120:CDS 55.0%
GGTCTTGCAATCCTAAGCGC+TGG + chr3_2:5109764-5109783 Msa0392120:intron 55.0%
CAAGAAGTGGTCCAGCGCTT+AGG - chr3_2:5109778-5109797 None:intergenic 55.0%
TTATCCTCCGCAGCGTGGGT+GGG - chr3_2:5107060-5107079 None:intergenic 60.0%
TGGCATGGCAGCATCGCAGT+AGG - chr3_2:5108014-5108033 None:intergenic 60.0%
TAAGGCAGCCAACCTCCCCA+TGG - chr3_2:5108561-5108580 None:intergenic 60.0%
CTTATCCTCCGCAGCGTGGG+TGG - chr3_2:5107061-5107080 None:intergenic 65.0%
!! GCGGGAGGTGCTGAAGAACG+AGG + chr3_2:5109294-5109313 Msa0392120:CDS 65.0%
CCTCCGCAGCGTGGGTGGGT+GGG - chr3_2:5107056-5107075 None:intergenic 75.0%
TCCTCCGCAGCGTGGGTGGG+TGG - chr3_2:5107057-5107076 None:intergenic 75.0%
! CCCACCCACCCACGCTGCGG+AGG + chr3_2:5107053-5107072 Msa0392120:five_prime_UTR 80.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 5107051 5110621 5107051 ID=Msa0392120;Name=Msa0392120
chr3_2 mRNA 5107051 5110621 5107051 ID=Msa0392120-mRNA-1;Parent=Msa0392120;Name=Msa0392120-mRNA-1;_AED=0.13;_eAED=0.13;_QI=44|1|1|1|1|1|3|672|303
chr3_2 exon 5107051 5107448 5107051 ID=Msa0392120-mRNA-1:exon:1206;Parent=Msa0392120-mRNA-1
chr3_2 exon 5109219 5109591 5109219 ID=Msa0392120-mRNA-1:exon:1207;Parent=Msa0392120-mRNA-1
chr3_2 exon 5109765 5110621 5109765 ID=Msa0392120-mRNA-1:exon:1208;Parent=Msa0392120-mRNA-1
chr3_2 five_prime_UTR 5107051 5107094 5107051 ID=Msa0392120-mRNA-1:five_prime_utr;Parent=Msa0392120-mRNA-1
chr3_2 CDS 5107095 5107448 5107095 ID=Msa0392120-mRNA-1:cds;Parent=Msa0392120-mRNA-1
chr3_2 CDS 5109219 5109591 5109219 ID=Msa0392120-mRNA-1:cds;Parent=Msa0392120-mRNA-1
chr3_2 CDS 5109765 5109949 5109765 ID=Msa0392120-mRNA-1:cds;Parent=Msa0392120-mRNA-1
chr3_2 three_prime_UTR 5109950 5110621 5109950 ID=Msa0392120-mRNA-1:three_prime_utr;Parent=Msa0392120-mRNA-1
Gene Sequence

>Msa0392120

ATGATGAACGTTATGATGATTTCCACTTCCATTATTAGATTTACGCTTCCTCCTTCTCATTCTCCTTTGTTAATTAAAACGTTTCATCCATCGTTGAAAATGAAATGTCGCTGCAGCAGCAGCAAGAACTCAGAGGAGAACAACGATTTGAAGAACGCACTTTCTGGAATGATGGGTGAGCAAGTTGAACAACTCTTAAGCAGAGAAGAGAACAAAGTTTTATTCGATAATTTACAGAAAGCCTCTCAAAGAGTTGAGATTGCTAAGACACAACTCGCTTTCATTCAGAAACAAGAACTTGCTCTTAAACACTTTAAGGATTACACTCAACAACTTCAAGGAAACGCTTTCCAGATTGCAGAAAGTCAAAGAGAAATTTCAGAGGCAAAAGCTATGCTTGAGGAAGCAGAACGCTCTTTGTTGCTAAATGCGGGAGGTGCTGAAGAACGAGGTGCATTCATGGGGATGAAAAGTGAAGAAGTTGATCGGGATGAAGAGAGATTGGAGTCGGTAAAAGCAGCATCTATCTCTGCCCTTGTTGGCACTTTGTCAGGGCTCCCCATATGCTTCACTCAGGCCACCAACCCAACTCAGCTGCTTCTCTCTGTGGCAATCAATTTCGTATGTTGTGCATTGTTTGGAGTGACTTTTCGATATACCGTAAGGAGAAACTTGGATGATGCTCAGCTTAAGACTGGGGTTGCAGCAGCTTTTGGTGTTGTTAAAGGTCTTGCAATCCTAAGCGCTGGACCACTTCTTGAACTGAACTTCGAAAGCTTATTAGCGTATGCCTGGGATGGAACTATTTATGTGTCTGAGAATCTTATAATTTTTGTTTCTGCTGCTGTTAGTCTAGATTATTGTTTAAAGACAAGACTTTTGAGCCCTTTTCCAATTGATAAAACACGTTAG

Protein sequence

>Msa0392120

MMNVMMISTSIIRFTLPPSHSPLLIKTFHPSLKMKCRCSSSKNSEENNDLKNALSGMMGEQVEQLLSREENKVLFDNLQKASQRVEIAKTQLAFIQKQELALKHFKDYTQQLQGNAFQIAESQREISEAKAMLEEAERSLLLNAGGAEERGAFMGMKSEEVDRDEERLESVKAASISALVGTLSGLPICFTQATNPTQLLLSVAINFVCCALFGVTFRYTVRRNLDDAQLKTGVAAAFGVVKGLAILSAGPLLELNFESLLAYAWDGTIYVSENLIIFVSAAVSLDYCLKTRLLSPFPIDKTR*