AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0487860


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0487860 MtrunA17_Chr3g0077271 90.461 304 23 3 5 306 1 300 0.0 531
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0487860 AT4G24090.1 50.181 277 128 2 28 301 36 305 2.50e-84 256

Find 88 sgRNAs with CRISPR-Local

Find 199 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTTGCTCTTAAACACTTTA+AGG 0.074175 3_4:-6957214 Msa0487860:CDS
GATTTGAAGAACGCACTTTC+TGG 0.183220 3_4:-6957366 Msa0487860:CDS
GCCCTTGTTGGCACTTTGTC+AGG 0.205650 3_4:-6955521 Msa0487860:CDS
ATGATAATCGGAAAATTAAT+TGG 0.244930 3_4:+6954961 None:intergenic
TCCGATTATCATAGCGTAAA+TGG 0.252998 3_4:-6954950 Msa0487860:three_prime_UTR
CATGCTGGAAATGGATAGTT+TGG 0.266410 3_4:-6954469 Msa0487860:three_prime_UTR
ATGCATGAGCTGAACTTTCT+TGG 0.305829 3_4:-6954723 Msa0487860:three_prime_UTR
AGATTATTTCATGCTGGAAA+TGG 0.309790 3_4:-6954478 Msa0487860:three_prime_UTR
AATAAGGCACTCGTAGAAAA+AGG 0.328136 3_4:+6954359 None:intergenic
GCATCTATCTCTGCCCTTGT+TGG 0.365023 3_4:-6955533 Msa0487860:CDS
TCCATTTACGCTATGATAAT+CGG 0.383249 3_4:+6954949 None:intergenic
TTGCATACAACTCAAAAGTA+TGG 0.383264 3_4:+6954558 None:intergenic
GCACAAAGCAGTCTAAAATA+AGG 0.388633 3_4:+6954343 None:intergenic
TGATCGGGATGAAGAGAGAT+TGG 0.389359 3_4:-6955570 Msa0487860:CDS
TTCGTATGTTGTGCATTGTT+TGG 0.390224 3_4:-6955434 Msa0487860:CDS
ACTTCAAGGAAACGCTTTCC+AGG 0.393652 3_4:-6957178 Msa0487860:intron
AGGAAGCGTAAATCTAATAA+TGG 0.401341 3_4:+6957491 None:intergenic
CCCTTGTTGGCACTTTGTCA+GGG 0.409622 3_4:-6955520 Msa0487860:CDS
AATATTAGAAGTGTTTGAAA+AGG 0.416395 3_4:-6954775 Msa0487860:three_prime_UTR
ATCATCCAAGTTTCTCCTTA+CGG 0.436352 3_4:+6955394 None:intergenic
CGCTCTTTGTTGCTAAATGC+GGG 0.443266 3_4:-6955641 Msa0487860:CDS
CAGAGAGAAGCAGCTGAGTT+GGG 0.445724 3_4:+6955468 None:intergenic
AGCAAAGTATTCAGAGAGAA+TGG 0.446842 3_4:-6954607 Msa0487860:three_prime_UTR
ACAGAGAGAAGCAGCTGAGT+TGG 0.447865 3_4:+6955467 None:intergenic
CAAGAAGTGGTCCAGCGCTT+AGG 0.448672 3_4:+6955144 None:intergenic
TGAAGAACGAGGTGCATTCA+TGG 0.449382 3_4:-6955612 Msa0487860:CDS
AAAGCTTATTAGCGTATGCC+TGG 0.453590 3_4:-6955109 Msa0487860:CDS
ATATTAGAAGTGTTTGAAAA+GGG 0.465590 3_4:-6954774 Msa0487860:three_prime_UTR
GAAAAGTGAAGAAGTTGATC+GGG 0.470593 3_4:-6955585 Msa0487860:CDS
AGCTGAACTTTCTTGGAAGA+GGG 0.470679 3_4:-6954716 Msa0487860:three_prime_UTR
GATGATGCTCAGCTTAAGAC+TGG 0.472044 3_4:-6955377 Msa0487860:CDS
ATGCTGGAAATGGATAGTTT+GGG 0.472461 3_4:-6954468 Msa0487860:three_prime_UTR
TCTGAATACTTTGCTGAGGC+AGG 0.475212 3_4:+6954615 None:intergenic
CTATGCTGCATGACTACAAT+GGG 0.476845 3_4:-6954748 Msa0487860:three_prime_UTR
CGTAAATCTAATAATGGAAG+TGG 0.481151 3_4:+6957497 None:intergenic
GAGCTGAACTTTCTTGGAAG+AGG 0.484465 3_4:-6954717 Msa0487860:three_prime_UTR
GTTCTCAGATTATTTCATGC+TGG 0.485230 3_4:-6954484 Msa0487860:three_prime_UTR
GGTGGCCTGAGTGAAGCATA+TGG 0.489258 3_4:+6955493 None:intergenic
ATTCAGAGAGAATGGAAGAG+AGG 0.496321 3_4:-6954599 Msa0487860:three_prime_UTR
GATTACACTCAACAACTTCA+AGG 0.499214 3_4:-6957192 Msa0487860:CDS
GAAGAACGAGGTGCATTCAT+GGG 0.509604 3_4:-6955611 Msa0487860:CDS
CCATGTCTTAATCAGGACAT+TGG 0.510699 3_4:-6954395 Msa0487860:three_prime_UTR
GAACGCACTTTCTGGAATGA+TGG 0.511508 3_4:-6957358 Msa0487860:CDS
AACAAAGGAGAATGAGAAGG+AGG 0.522216 3_4:+6957471 None:intergenic
GAGAAGCAGCTGAGTTGGGT+TGG 0.522960 3_4:+6955472 None:intergenic
GCCCTGACAAAGTGCCAACA+AGG 0.524369 3_4:+6955519 None:intergenic
AAGCAGCTGAGTTGGGTTGG+TGG 0.530246 3_4:+6955475 None:intergenic
GTGGCCTGAGTGAAGCATAT+GGG 0.535009 3_4:+6955494 None:intergenic
TCCTGATTAAGACATGGAAA+AGG 0.540446 3_4:+6954401 None:intergenic
GGTCTTGCAATCCTAAGCGC+TGG 0.540628 3_4:-6955155 Msa0487860:CDS
TGAAAAGTGAAGAAGTTGAT+CGG 0.542077 3_4:-6955586 Msa0487860:CDS
ATTAACAAAGGAGAATGAGA+AGG 0.542089 3_4:+6957468 None:intergenic
AACGCACTTTCTGGAATGAT+GGG 0.549369 3_4:-6957357 Msa0487860:CDS
CAATTGATAAAACACGTTAG+CGG 0.555580 3_4:-6954989 Msa0487860:exon
CAGAGAGAATGGAAGAGAGG+AGG 0.557632 3_4:-6954596 Msa0487860:three_prime_UTR
CACATAAATAGTTCCATCCC+AGG 0.559029 3_4:+6955091 None:intergenic
AGCAATCTCAACTCTTTGAG+AGG 0.560228 3_4:+6957269 None:intergenic
TCGAAGTTCAGTTCAAGAAG+TGG 0.560534 3_4:+6955131 None:intergenic
ATATACCGTAAGGAGAAACT+TGG 0.564974 3_4:-6955399 Msa0487860:CDS
TTAGAAGTGTTTGAAAAGGG+AGG 0.572869 3_4:-6954771 Msa0487860:three_prime_UTR
TACGTATCCCTTTGCCGCTG+CGG 0.575502 3_4:-6957564 None:intergenic
ACGCTCTTTGTTGCTAAATG+CGG 0.580608 3_4:-6955642 Msa0487860:CDS
ATGATGCTCAGCTTAAGACT+GGG 0.594958 3_4:-6955376 Msa0487860:CDS
AACTCAGCTGCTTCTCTCTG+TGG 0.595669 3_4:-6955465 Msa0487860:CDS
GCTGAACTTTCTTGGAAGAG+GGG 0.596838 3_4:-6954715 Msa0487860:three_prime_UTR
GCTATGCTGCATGACTACAA+TGG 0.600401 3_4:-6954749 Msa0487860:three_prime_UTR
CCAATGTCCTGATTAAGACA+TGG 0.601846 3_4:+6954395 None:intergenic
GCTCCCCATATGCTTCACTC+AGG 0.614386 3_4:-6955498 Msa0487860:CDS
AAGCTTATTAGCGTATGCCT+GGG 0.615492 3_4:-6955108 Msa0487860:CDS
ATTTACGTTTGAAATCACTA+CGG 0.616304 3_4:+6954815 None:intergenic
TGATTAAGACATGGAAAAGG+AGG 0.619717 3_4:+6954404 None:intergenic
TTATTAGCGTATGCCTGGGA+TGG 0.620264 3_4:-6955104 Msa0487860:CDS
GGATGAAGAGAGATTGGAGT+CGG 0.627110 3_4:-6955564 Msa0487860:CDS
TCTCTCTGAATACTTTGCTG+AGG 0.629890 3_4:+6954611 None:intergenic
GTATCCCTTTGCCGCTGCGG+AGG 0.630310 3_4:-6957561 None:intergenic
TTCTTTCTTATCCTCCGCAG+CGG 0.631983 3_4:+6957550 None:intergenic
CTGGAAATGGATAGTTTGGG+AGG 0.633880 3_4:-6954465 Msa0487860:three_prime_UTR
AAGTCAAAGAGAAATTTCAG+AGG 0.639606 3_4:-6955690 Msa0487860:CDS
TCTTTGTTGCTAAATGCGGG+AGG 0.641623 3_4:-6955638 Msa0487860:CDS
AAGAACGAGGTGCATTCATG+GGG 0.641964 3_4:-6955610 Msa0487860:CDS
GAAGACTATACTCACCACAT+TGG 0.647884 3_4:-6954849 Msa0487860:three_prime_UTR
TGGCCTGAGTGAAGCATATG+GGG 0.653318 3_4:+6955495 None:intergenic
CAGCAGCAGCAAGAACTCAG+AGG 0.653485 3_4:-6957397 Msa0487860:CDS
AGAGGCAAAAGCTATGCTTG+AGG 0.674852 3_4:-6955672 Msa0487860:CDS
CCCTGACAAAGTGCCAACAA+GGG 0.676499 3_4:+6955520 None:intergenic
CGGCATGCAACTTTCCAATG+TGG 0.695904 3_4:+6954835 None:intergenic
GCGGGAGGTGCTGAAGAACG+AGG 0.698522 3_4:-6955623 Msa0487860:CDS
TGATGCTCAGCTTAAGACTG+GGG 0.707538 3_4:-6955375 Msa0487860:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTTTTTTATAA+TGG - chr3_4:6955563-6955582 Msa0487860:CDS 0.0%
!! AGCAAATATAATACTAATAA+AGG + chr3_4:6955770-6955789 None:intergenic 15.0%
!! AATAAATAAAATGTTAAGAG+AGG + chr3_4:6955866-6955885 None:intergenic 15.0%
!!! AATGATTATCATTTTTTGTT+TGG + chr3_4:6956999-6957018 None:intergenic 15.0%
!!! TGAAACGTTTTAATTAACAA+AGG + chr3_4:6954415-6954434 None:intergenic 20.0%
!!! TGATTTTCAAAGTAAAGTAT+TGG + chr3_4:6955183-6955202 None:intergenic 20.0%
!!! AATACTTTACTTTGAAAATC+AGG - chr3_4:6955182-6955201 Msa0487860:intron 20.0%
!!! TGACAAATTTTAAAGAGAAA+CGG - chr3_4:6955328-6955347 Msa0487860:intron 20.0%
!! ATTAATAAAATTAAGCAACG+TGG - chr3_4:6955632-6955651 Msa0487860:CDS 20.0%
!! TTAATAAAATTAAGCAACGT+GGG - chr3_4:6955633-6955652 Msa0487860:CDS 20.0%
!! AAATATTAGAGTAATCCTAT+GGG + chr3_4:6955692-6955711 None:intergenic 20.0%
!! AAAATATTAGAGTAATCCTA+TGG + chr3_4:6955693-6955712 None:intergenic 20.0%
!! ATGATAATCGGAAAATTAAT+TGG + chr3_4:6956910-6956929 None:intergenic 20.0%
!!! AATATTAGAAGTGTTTGAAA+AGG - chr3_4:6957093-6957112 Msa0487860:intron 20.0%
!!! ATATTAGAAGTGTTTGAAAA+GGG - chr3_4:6957094-6957113 Msa0487860:intron 20.0%
! ATTTAGTTAGAATAATGGCA+TGG + chr3_4:6954985-6955004 None:intergenic 25.0%
! ACGCTATTTAGTTAGAATAA+TGG + chr3_4:6954990-6955009 None:intergenic 25.0%
!!! TTTTCAAAGTAAAGTATTGG+AGG + chr3_4:6955180-6955199 None:intergenic 25.0%
! AGAAAATAGATAGTAGTAAG+TGG - chr3_4:6955438-6955457 Msa0487860:CDS 25.0%
!!! AAAAAGTACTTATGATCATC+TGG + chr3_4:6956053-6956072 None:intergenic 25.0%
!! GTGTTTTATCAATTGGAAAA+GGG + chr3_4:6956874-6956893 None:intergenic 25.0%
!! ATTTACGTTTGAAATCACTA+CGG + chr3_4:6957056-6957075 None:intergenic 25.0%
! CGTAAATCTAATAATGGAAG+TGG + chr3_4:6954374-6954393 None:intergenic 30.0%
! AGGAAGCGTAAATCTAATAA+TGG + chr3_4:6954380-6954399 None:intergenic 30.0%
ATTAACAAAGGAGAATGAGA+AGG + chr3_4:6954403-6954422 None:intergenic 30.0%
ACTTGCTCTTAAACACTTTA+AGG - chr3_4:6954654-6954673 Msa0487860:three_prime_UTR 30.0%
ACGTATATAAGCTATCTTGT+CGG - chr3_4:6954782-6954801 Msa0487860:three_prime_UTR 30.0%
AACTCAATATTGATACACCA+GGG - chr3_4:6954861-6954880 Msa0487860:three_prime_UTR 30.0%
AAAAAACGACATTTGATGCT+TGG + chr3_4:6955099-6955118 None:intergenic 30.0%
! AGAGTAAGTTTTACAAGTGA+TGG + chr3_4:6955157-6955176 None:intergenic 30.0%
CAAAAATGTCAAAATGAGAG+TGG - chr3_4:6955385-6955404 Msa0487860:CDS 30.0%
AAATAGATAGTAGTAAGTGG+TGG - chr3_4:6955441-6955460 Msa0487860:CDS 30.0%
TGAGCAAAAATTAACGATGA+AGG - chr3_4:6955479-6955498 Msa0487860:CDS 30.0%
AAAGGTTATCCTGAATGAAA+GGG + chr3_4:6955752-6955771 None:intergenic 30.0%
TAAAGGTTATCCTGAATGAA+AGG + chr3_4:6955753-6955772 None:intergenic 30.0%
! GATATAAGACTAGTTGTTGA+AGG + chr3_4:6955821-6955840 None:intergenic 30.0%
TTGTATACATGCACTCTTTA+TGG - chr3_4:6956021-6956040 Msa0487860:intron 30.0%
! CTGTCTTTATTTGTCAACAA+AGG - chr3_4:6956092-6956111 Msa0487860:intron 30.0%
AAGTCAAAGAGAAATTTCAG+AGG - chr3_4:6956178-6956197 Msa0487860:intron 30.0%
! TGAAAAGTGAAGAAGTTGAT+CGG - chr3_4:6956282-6956301 Msa0487860:intron 30.0%
! ATTTTACAGACAAGTCAAGT+TGG - chr3_4:6956581-6956600 Msa0487860:intron 30.0%
! TTTTCCCTTCATTTCTTTTG+TGG - chr3_4:6956624-6956643 Msa0487860:intron 30.0%
! TTTCCCTTCATTTCTTTTGT+GGG - chr3_4:6956625-6956644 Msa0487860:intron 30.0%
! CGTGTTTTATCAATTGGAAA+AGG + chr3_4:6956875-6956894 None:intergenic 30.0%
CAATTGATAAAACACGTTAG+CGG - chr3_4:6956879-6956898 Msa0487860:intron 30.0%
TCCATTTACGCTATGATAAT+CGG + chr3_4:6956922-6956941 None:intergenic 30.0%
!!! ATTTTTTGTTTGGCGTTTGA+AGG + chr3_4:6956989-6957008 None:intergenic 30.0%
! AGGGGTTGAATATATTTTCA+TGG - chr3_4:6957171-6957190 Msa0487860:intron 30.0%
! GGGGTTGAATATATTTTCAT+GGG - chr3_4:6957172-6957191 Msa0487860:intron 30.0%
! TGAATATATTTTCATGGGTG+AGG - chr3_4:6957177-6957196 Msa0487860:intron 30.0%
! GAATATATTTTCATGGGTGA+GGG - chr3_4:6957178-6957197 Msa0487860:intron 30.0%
TTGCATACAACTCAAAAGTA+TGG + chr3_4:6957313-6957332 None:intergenic 30.0%
AGATTATTTCATGCTGGAAA+TGG - chr3_4:6957390-6957409 Msa0487860:CDS 30.0%
! CGACATTTCATTTTCAACGA+TGG + chr3_4:6954439-6954458 None:intergenic 35.0%
GATTACACTCAACAACTTCA+AGG - chr3_4:6954676-6954695 Msa0487860:three_prime_UTR 35.0%
CAACTCAATATTGATACACC+AGG - chr3_4:6954860-6954879 Msa0487860:three_prime_UTR 35.0%
TTCTAACTAAATAGCGTAGC+AGG - chr3_4:6954993-6955012 Msa0487860:CDS 35.0%
! AAGTTTTACAAGTGATGGTC+AGG + chr3_4:6955152-6955171 None:intergenic 35.0%
TGTTCTACTTACATCAACCA+TGG + chr3_4:6955367-6955386 None:intergenic 35.0%
TACGCATAGAACCAATTAAC+AGG - chr3_4:6955603-6955622 Msa0487860:CDS 35.0%
TTAATCACTCGCCTGTTAAT+TGG + chr3_4:6955617-6955636 None:intergenic 35.0%
! TTTTTCTTGCCCTTTCATTC+AGG - chr3_4:6955740-6955759 Msa0487860:intron 35.0%
!! CTTGAATCTTGAGGGTATTA+TGG + chr3_4:6955893-6955912 None:intergenic 35.0%
TAATACCCTCAAGATTCAAG+AGG - chr3_4:6955893-6955912 Msa0487860:intron 35.0%
AGTAGGGATAAAATTTCCTC+CGG - chr3_4:6955925-6955944 Msa0487860:intron 35.0%
AGAGTGCATGTATACAACAA+GGG + chr3_4:6956018-6956037 None:intergenic 35.0%
! AAGAGTGCATGTATACAACA+AGG + chr3_4:6956019-6956038 None:intergenic 35.0%
! GAAAAGTGAAGAAGTTGATC+GGG - chr3_4:6956283-6956302 Msa0487860:intron 35.0%
TTCGTATGTTGTGCATTGTT+TGG - chr3_4:6956434-6956453 Msa0487860:intron 35.0%
! TGACTTTTCGATATACCGTA+AGG - chr3_4:6956459-6956478 Msa0487860:intron 35.0%
ATATACCGTAAGGAGAAACT+TGG - chr3_4:6956469-6956488 Msa0487860:intron 35.0%
ATCATCCAAGTTTCTCCTTA+CGG + chr3_4:6956477-6956496 None:intergenic 35.0%
CAACCCACAAAAGAAATGAA+GGG + chr3_4:6956631-6956650 None:intergenic 35.0%
TCAACCCACAAAAGAAATGA+AGG + chr3_4:6956632-6956651 None:intergenic 35.0%
! CGCTAACGTGTTTTATCAAT+TGG + chr3_4:6956881-6956900 None:intergenic 35.0%
TCCGATTATCATAGCGTAAA+TGG - chr3_4:6956918-6956937 Msa0487860:intron 35.0%
!! TTAGAAGTGTTTGAAAAGGG+AGG - chr3_4:6957097-6957116 Msa0487860:intron 35.0%
! AGCAAAGTATTCAGAGAGAA+TGG - chr3_4:6957261-6957280 Msa0487860:CDS 35.0%
GTTCTCAGATTATTTCATGC+TGG - chr3_4:6957384-6957403 Msa0487860:CDS 35.0%
ATGCTGGAAATGGATAGTTT+GGG - chr3_4:6957400-6957419 Msa0487860:CDS 35.0%
!!! TGTGTGTGAAGTTTTGTTCA+AGG - chr3_4:6957430-6957449 Msa0487860:CDS 35.0%
TGATTAAGACATGGAAAAGG+AGG + chr3_4:6957467-6957486 None:intergenic 35.0%
! TCCTTTTCCATGTCTTAATC+AGG - chr3_4:6957466-6957485 Msa0487860:CDS 35.0%
TCCTGATTAAGACATGGAAA+AGG + chr3_4:6957470-6957489 None:intergenic 35.0%
! AATAAGGCACTCGTAGAAAA+AGG + chr3_4:6957512-6957531 None:intergenic 35.0%
! GCACAAAGCAGTCTAAAATA+AGG + chr3_4:6957528-6957547 None:intergenic 35.0%
AACAAAGGAGAATGAGAAGG+AGG + chr3_4:6954400-6954419 None:intergenic 40.0%
GATTTGAAGAACGCACTTTC+TGG - chr3_4:6954502-6954521 Msa0487860:three_prime_UTR 40.0%
!! AACGCACTTTCTGGAATGAT+GGG - chr3_4:6954511-6954530 Msa0487860:three_prime_UTR 40.0%
AGCAATCTCAACTCTTTGAG+AGG + chr3_4:6954602-6954621 None:intergenic 40.0%
!!! GCAAGAACGTTACTTTTACC+TGG + chr3_4:6954711-6954730 None:intergenic 40.0%
AGCTATCTTGTCGGAACTTA+TGG - chr3_4:6954791-6954810 Msa0487860:three_prime_UTR 40.0%
CTGCAGTTGCATATCAAGTT+TGG - chr3_4:6954892-6954911 Msa0487860:three_prime_UTR 40.0%
ATAGCAGTAGGTGTGTTTGT+TGG + chr3_4:6954958-6954977 None:intergenic 40.0%
ATTTGATGCTTGGTAGATGG+TGG + chr3_4:6955089-6955108 None:intergenic 40.0%
GACATTTGATGCTTGGTAGA+TGG + chr3_4:6955092-6955111 None:intergenic 40.0%
! TTTTACAAGTGATGGTCAGG+TGG + chr3_4:6955149-6955168 None:intergenic 40.0%
GAAATCGTAAAATCTCGCAG+TGG - chr3_4:6955238-6955257 Msa0487860:intron 40.0%
! GATCGTGTAACCTTTGTTTG+TGG - chr3_4:6955281-6955300 Msa0487860:intron 40.0%
TTACATCAACCATGGTCACT+AGG + chr3_4:6955359-6955378 None:intergenic 40.0%
TAGTAGTAAGTGGTGGTCAA+AGG - chr3_4:6955448-6955467 Msa0487860:CDS 40.0%
TTAACGATGAAGGAGATCCA+TGG - chr3_4:6955489-6955508 Msa0487860:CDS 40.0%
TAACGATGAAGGAGATCCAT+GGG - chr3_4:6955490-6955509 Msa0487860:CDS 40.0%
ACTCATCCAACCTACTTCTA+AGG + chr3_4:6955527-6955546 None:intergenic 40.0%
! TTAGAAGTAGGTTGGATGAG+TGG - chr3_4:6955526-6955545 Msa0487860:CDS 40.0%
!! GTTGAAGGCTTTAAGCATAG+AGG + chr3_4:6955806-6955825 None:intergenic 40.0%
TTCCTCCTCTTGAATCTTGA+GGG + chr3_4:6955901-6955920 None:intergenic 40.0%
TCAAGATTCAAGAGGAGGAA+GGG - chr3_4:6955901-6955920 Msa0487860:intron 40.0%
AGTTCAGCAGTGAAGCATAA+AGG + chr3_4:6955951-6955970 None:intergenic 40.0%
GAGTGCATGTATACAACAAG+GGG + chr3_4:6956017-6956036 None:intergenic 40.0%
! GACAGAGTACTTCAGTAACA+AGG + chr3_4:6956077-6956096 None:intergenic 40.0%
ACGCTCTTTGTTGCTAAATG+CGG - chr3_4:6956226-6956245 Msa0487860:intron 40.0%
ATGATGCTCAGCTTAAGACT+GGG - chr3_4:6956492-6956511 Msa0487860:intron 40.0%
!!! GCAGCTTTTGCTGTTGTTAA+AGG - chr3_4:6956521-6956540 Msa0487860:intron 40.0%
AATCAACTCACTGTGCTCTA+AGG - chr3_4:6956545-6956564 Msa0487860:intron 40.0%
TCGAAGTTCAGTTCAAGAAG+TGG + chr3_4:6956740-6956759 None:intergenic 40.0%
AAAGCTTATTAGCGTATGCC+TGG - chr3_4:6956759-6956778 Msa0487860:intron 40.0%
AAGCTTATTAGCGTATGCCT+GGG - chr3_4:6956760-6956779 Msa0487860:intron 40.0%
CACATAAATAGTTCCATCCC+AGG + chr3_4:6956780-6956799 None:intergenic 40.0%
GAAGACTATACTCACCACAT+TGG - chr3_4:6957019-6957038 Msa0487860:intron 40.0%
CTATGCTGCATGACTACAAT+GGG - chr3_4:6957120-6957139 Msa0487860:intron 40.0%
ATGCATGAGCTGAACTTTCT+TGG - chr3_4:6957145-6957164 Msa0487860:intron 40.0%
AGCTGAACTTTCTTGGAAGA+GGG - chr3_4:6957152-6957171 Msa0487860:intron 40.0%
TCTCTCTGAATACTTTGCTG+AGG + chr3_4:6957260-6957279 None:intergenic 40.0%
ATTCAGAGAGAATGGAAGAG+AGG - chr3_4:6957269-6957288 Msa0487860:CDS 40.0%
CATGCTGGAAATGGATAGTT+TGG - chr3_4:6957399-6957418 Msa0487860:CDS 40.0%
CCAATGTCCTGATTAAGACA+TGG + chr3_4:6957476-6957495 None:intergenic 40.0%
CCATGTCTTAATCAGGACAT+TGG - chr3_4:6957473-6957492 Msa0487860:CDS 40.0%
!! GAACGCACTTTCTGGAATGA+TGG - chr3_4:6954510-6954529 Msa0487860:three_prime_UTR 45.0%
ACTTCAAGGAAACGCTTTCC+AGG - chr3_4:6954690-6954709 Msa0487860:three_prime_UTR 45.0%
TAAATAGCGTAGCAGGCAAC+CGG - chr3_4:6955000-6955019 Msa0487860:CDS 45.0%
! AATGTGGTGACTAGTTGTGC+CGG + chr3_4:6955022-6955041 None:intergenic 45.0%
AGAGAGAGAGAGAGAGAATG+TGG + chr3_4:6955038-6955057 None:intergenic 45.0%
! TGGTAGATGGTGGTAACTAG+TGG + chr3_4:6955079-6955098 None:intergenic 45.0%
! CAGGTGGTGTGGTATTTTAC+CGG + chr3_4:6955133-6955152 None:intergenic 45.0%
! CGTGTAACCTTTGTTTGTGG+CGG - chr3_4:6955284-6955303 Msa0487860:intron 45.0%
! TTTTCGACCGCCACAAACAA+AGG + chr3_4:6955294-6955313 None:intergenic 45.0%
AACGATGAAGGAGATCCATG+GGG - chr3_4:6955491-6955510 Msa0487860:CDS 45.0%
CCTTCACATTGCTCAACTAG+TGG + chr3_4:6955659-6955678 None:intergenic 45.0%
CCACTAGTTGAGCAATGTGA+AGG - chr3_4:6955656-6955675 Msa0487860:CDS 45.0%
GAAGGAAAGAGTTTGCCCAT+AGG - chr3_4:6955674-6955693 Msa0487860:CDS 45.0%
TTAAGCATAGAGGTCTGGAC+TGG + chr3_4:6955796-6955815 None:intergenic 45.0%
!! AGGCTTTAAGCATAGAGGTC+TGG + chr3_4:6955801-6955820 None:intergenic 45.0%
TACCCTCAAGATTCAAGAGG+AGG - chr3_4:6955896-6955915 Msa0487860:intron 45.0%
CTTCCTCCTCTTGAATCTTG+AGG + chr3_4:6955902-6955921 None:intergenic 45.0%
CTCAAGATTCAAGAGGAGGA+AGG - chr3_4:6955900-6955919 Msa0487860:intron 45.0%
CAAGATTCAAGAGGAGGAAG+GGG - chr3_4:6955902-6955921 Msa0487860:intron 45.0%
AGAGGCAAAAGCTATGCTTG+AGG - chr3_4:6956196-6956215 Msa0487860:intron 45.0%
CGCTCTTTGTTGCTAAATGC+GGG - chr3_4:6956227-6956246 Msa0487860:intron 45.0%
TCTTTGTTGCTAAATGCGGG+AGG - chr3_4:6956230-6956249 Msa0487860:intron 45.0%
TGAAGAACGAGGTGCATTCA+TGG - chr3_4:6956256-6956275 Msa0487860:intron 45.0%
GAAGAACGAGGTGCATTCAT+GGG - chr3_4:6956257-6956276 Msa0487860:intron 45.0%
AAGAACGAGGTGCATTCATG+GGG - chr3_4:6956258-6956277 Msa0487860:intron 45.0%
TGATCGGGATGAAGAGAGAT+TGG - chr3_4:6956298-6956317 Msa0487860:intron 45.0%
GGATGAAGAGAGATTGGAGT+CGG - chr3_4:6956304-6956323 Msa0487860:intron 45.0%
GATGATGCTCAGCTTAAGAC+TGG - chr3_4:6956491-6956510 Msa0487860:intron 45.0%
TGATGCTCAGCTTAAGACTG+GGG - chr3_4:6956493-6956512 Msa0487860:intron 45.0%
CTGAAACAAAACCGTGTTGC+AGG - chr3_4:6956692-6956711 Msa0487860:intron 45.0%
TTATTAGCGTATGCCTGGGA+TGG - chr3_4:6956764-6956783 Msa0487860:intron 45.0%
GCTATGCTGCATGACTACAA+TGG - chr3_4:6957119-6957138 Msa0487860:intron 45.0%
GAGCTGAACTTTCTTGGAAG+AGG - chr3_4:6957151-6957170 Msa0487860:intron 45.0%
GCTGAACTTTCTTGGAAGAG+GGG - chr3_4:6957153-6957172 Msa0487860:intron 45.0%
TCTGAATACTTTGCTGAGGC+AGG + chr3_4:6957256-6957275 None:intergenic 45.0%
CTGGAAATGGATAGTTTGGG+AGG - chr3_4:6957403-6957422 Msa0487860:CDS 45.0%
!!! CGTTTTTTGTCATGCAGCGC+CGG - chr3_4:6955111-6955130 Msa0487860:CDS 50.0%
ACGGAGATTCCTAGTGACCA+TGG - chr3_4:6955347-6955366 Msa0487860:intron 50.0%
! AGGTTGGCTGCCTTAGAAGT+AGG - chr3_4:6955514-6955533 Msa0487860:CDS 50.0%
TGGCTGCCTTAGAAGTAGGT+TGG - chr3_4:6955518-6955537 Msa0487860:CDS 50.0%
CAGCAGTGAAGCATAAAGGC+CGG + chr3_4:6955947-6955966 None:intergenic 50.0%
GCATCTATCTCTGCCCTTGT+TGG - chr3_4:6956335-6956354 Msa0487860:intron 50.0%
! CCCTGACAAAGTGCCAACAA+GGG + chr3_4:6956351-6956370 None:intergenic 50.0%
CCCTTGTTGGCACTTTGTCA+GGG - chr3_4:6956348-6956367 Msa0487860:intron 50.0%
TGGCCTGAGTGAAGCATATG+GGG + chr3_4:6956376-6956395 None:intergenic 50.0%
GTGGCCTGAGTGAAGCATAT+GGG + chr3_4:6956377-6956396 None:intergenic 50.0%
CAGAGAGAAGCAGCTGAGTT+GGG + chr3_4:6956403-6956422 None:intergenic 50.0%
ACAGAGAGAAGCAGCTGAGT+TGG + chr3_4:6956404-6956423 None:intergenic 50.0%
AACTCAGCTGCTTCTCTCTG+TGG - chr3_4:6956403-6956422 Msa0487860:intron 50.0%
GGATTGCAAGACCTGCAACA+CGG + chr3_4:6956706-6956725 None:intergenic 50.0%
CGGCATGCAACTTTCCAATG+TGG + chr3_4:6957036-6957055 None:intergenic 50.0%
CAGAGAGAATGGAAGAGAGG+AGG - chr3_4:6957272-6957291 Msa0487860:CDS 50.0%
CAGCAGCAGCAAGAACTCAG+AGG - chr3_4:6954471-6954490 Msa0487860:three_prime_UTR 55.0%
CAACTGCAGAGACAAGTCCC+TGG + chr3_4:6954881-6954900 None:intergenic 55.0%
TGGCATGGCAGCATAGCAGT+AGG + chr3_4:6954970-6954989 None:intergenic 55.0%
CAAGTGATGGTCAGGTGGTG+TGG + chr3_4:6955144-6955163 None:intergenic 55.0%
GATGAAGGAGATCCATGGGG+AGG - chr3_4:6955494-6955513 Msa0487860:CDS 55.0%
AAGGAGATCCATGGGGAGGT+TGG - chr3_4:6955498-6955517 Msa0487860:CDS 55.0%
TCAAGAGGAGGAAGGGGAGT+AGG - chr3_4:6955908-6955927 Msa0487860:intron 55.0%
CAAGAGGAGGAAGGGGAGTA+GGG - chr3_4:6955909-6955928 Msa0487860:intron 55.0%
CAGTGAAGCATAAAGGCCGG+AGG + chr3_4:6955944-6955963 None:intergenic 55.0%
GCCCTTGTTGGCACTTTGTC+AGG - chr3_4:6956347-6956366 Msa0487860:intron 55.0%
! GCCCTGACAAAGTGCCAACA+AGG + chr3_4:6956352-6956371 None:intergenic 55.0%
GCTCCCCATATGCTTCACTC+AGG - chr3_4:6956370-6956389 Msa0487860:intron 55.0%
GGTGGCCTGAGTGAAGCATA+TGG + chr3_4:6956378-6956397 None:intergenic 55.0%
!! AAGCAGCTGAGTTGGGTTGG+TGG + chr3_4:6956396-6956415 None:intergenic 55.0%
! GAGAAGCAGCTGAGTTGGGT+TGG + chr3_4:6956399-6956418 None:intergenic 55.0%
GGTCTTGCAATCCTAAGCGC+TGG - chr3_4:6956713-6956732 Msa0487860:intron 55.0%
CAAGAAGTGGTCCAGCGCTT+AGG + chr3_4:6956727-6956746 None:intergenic 55.0%
TAAGGCAGCCAACCTCCCCA+TGG + chr3_4:6955509-6955528 None:intergenic 60.0%
!! GCGGGAGGTGCTGAAGAACG+AGG - chr3_4:6956245-6956264 Msa0487860:intron 65.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 6954319 6957571 6954319 ID=Msa0487860;Name=Msa0487860
chr3_4 mRNA 6954319 6957571 6954319 ID=Msa0487860-mRNA-1;Parent=Msa0487860;Name=Msa0487860-mRNA-1;_AED=0.13;_eAED=0.13;_QI=30|1|1|1|1|1|3|673|306
chr3_4 exon 6954319 6955176 6954319 ID=Msa0487860-mRNA-1:exon:2442;Parent=Msa0487860-mRNA-1
chr3_4 exon 6955348 6955720 6955348 ID=Msa0487860-mRNA-1:exon:2441;Parent=Msa0487860-mRNA-1
chr3_4 exon 6957179 6957571 6957179 ID=Msa0487860-mRNA-1:exon:2440;Parent=Msa0487860-mRNA-1
chr3_4 five_prime_UTR 6957542 6957571 6957542 ID=Msa0487860-mRNA-1:five_prime_utr;Parent=Msa0487860-mRNA-1
chr3_4 CDS 6957179 6957541 6957179 ID=Msa0487860-mRNA-1:cds;Parent=Msa0487860-mRNA-1
chr3_4 CDS 6955348 6955720 6955348 ID=Msa0487860-mRNA-1:cds;Parent=Msa0487860-mRNA-1
chr3_4 CDS 6954992 6955176 6954992 ID=Msa0487860-mRNA-1:cds;Parent=Msa0487860-mRNA-1
chr3_4 three_prime_UTR 6954319 6954991 6954319 ID=Msa0487860-mRNA-1:three_prime_utr;Parent=Msa0487860-mRNA-1
Gene Sequence

>Msa0487860

ATGATGAACGTTATGATGATTTCCACTTCCATTATTAGATTTACGCTTCCTCCTTCTCATTCTCCTTTGTTAATTAAAACGTTTCATCCATCGTTGAAAATGAAATGTCGCTGCAGCAGCAGCAGCAGCAGCAAGAACTCAGAGGAGAACAACGATTTGAAGAACGCACTTTCTGGAATGATGGGTGAGCAAGTTGAACAACTCTTAAGCAGAGAAGAGAACAAAGTTTTATTCGATAATTTACAGAAAGCCTCTCAAAGAGTTGAGATTGCTAAGACACAACTCGCTTTCATTCAGAAACAAGAACTTGCTCTTAAACACTTTAAGGATTACACTCAACAACTTCAAGGAAACGCTTTCCAGATTGCAGAAAGTCAAAGAGAAATTTCAGAGGCAAAAGCTATGCTTGAGGAAGCAGAACGCTCTTTGTTGCTAAATGCGGGAGGTGCTGAAGAACGAGGTGCATTCATGGGGATGAAAAGTGAAGAAGTTGATCGGGATGAAGAGAGATTGGAGTCGGTAAAAGCAGCATCTATCTCTGCCCTTGTTGGCACTTTGTCAGGGCTCCCCATATGCTTCACTCAGGCCACCAACCCAACTCAGCTGCTTCTCTCTGTGGCAATCAATTTCGTATGTTGTGCATTGTTTGGAGTGACTTTTCGATATACCGTAAGGAGAAACTTGGATGATGCTCAGCTTAAGACTGGGGTTGCAGCAGCTTTTGCTGTTGTTAAAGGTCTTGCAATCCTAAGCGCTGGACCACTTCTTGAACTGAACTTCGAAAGCTTATTAGCGTATGCCTGGGATGGAACTATTTATGTGTCTGAGAATCTTATAATTTTTGTTTCTGCTGCTGTTAGTCTAGATTATTGTTTAAAGACAAGACTTTTGAGCCCTTTTCCAATTGATAAAACACGTTAG

Protein sequence

>Msa0487860

MMNVMMISTSIIRFTLPPSHSPLLIKTFHPSLKMKCRCSSSSSSKNSEENNDLKNALSGMMGEQVEQLLSREENKVLFDNLQKASQRVEIAKTQLAFIQKQELALKHFKDYTQQLQGNAFQIAESQREISEAKAMLEEAERSLLLNAGGAEERGAFMGMKSEEVDRDEERLESVKAASISALVGTLSGLPICFTQATNPTQLLLSVAINFVCCALFGVTFRYTVRRNLDDAQLKTGVAAAFAVVKGLAILSAGPLLELNFESLLAYAWDGTIYVSENLIIFVSAAVSLDYCLKTRLLSPFPIDKTR*