Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0544640 | XP_013456776.1 | 57.143 | 126 | 48 | 2 | 2 | 121 | 155 | 280 | 9.62e-23 | 107 |
| Msa0544640 | XP_013456776.1 | 88.085 | 235 | 27 | 1 | 122 | 355 | 47 | 281 | 5.72e-123 | 365 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0544640 | A0A072UM87 | 57.143 | 126 | 48 | 2 | 2 | 121 | 155 | 280 | 4.60e-23 | 107 |
| Msa0544640 | A0A072UM87 | 88.085 | 235 | 27 | 1 | 122 | 355 | 47 | 281 | 2.73e-123 | 365 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0005260 | Msa0544640 | 0.810925 | 9.043745e-51 | -8.615850e-47 |
| Msa0180350 | Msa0544640 | 0.814706 | 1.344275e-51 | -8.615850e-47 |
| Msa0365950 | Msa0544640 | 0.804510 | 2.086550e-49 | -8.615850e-47 |
| Msa0264680 | Msa0544640 | 0.823052 | 1.704172e-53 | -8.615850e-47 |
| Msa0302730 | Msa0544640 | 0.834819 | 2.404242e-56 | -8.615850e-47 |
| Msa0544640 | Msa0609850 | 0.806732 | 7.132046e-50 | -8.615850e-47 |
| Msa0544640 | Msa0662580 | 0.815571 | 8.635632e-52 | -8.615850e-47 |
| Msa0544640 | Msa0807670 | 0.816453 | 5.487076e-52 | -8.615850e-47 |
| Msa0544640 | Msa0807680 | 0.802334 | 5.894806e-49 | -8.615850e-47 |
| Msa0544640 | Msa1023310 | 0.811557 | 6.597379e-51 | -8.615850e-47 |
| Msa0544640 | Msa1225580 | 0.839866 | 1.226401e-57 | -8.615850e-47 |
| Msa0544640 | Msa1355510 | 0.824182 | 9.270041e-54 | -8.615850e-47 |
| Msa0544640 | Msa1398900 | 0.805883 | 1.076766e-49 | -8.615850e-47 |
| Msa0544640 | Msa1420940 | 0.804815 | 1.802589e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0544640 | MtrunA17_Chr4g0042791 | 88.085 | 235 | 27 | 1 | 122 | 355 | 47 | 281 | 5.26e-127 | 365 |
| Msa0544640 | MtrunA17_Chr4g0042791 | 57.143 | 126 | 48 | 2 | 2 | 121 | 155 | 280 | 8.85e-27 | 107 |
| Msa0544640 | MtrunA17_Chr4g0042781 | 59.916 | 237 | 88 | 2 | 122 | 354 | 51 | 284 | 1.08e-81 | 250 |
| Msa0544640 | MtrunA17_Chr4g0042781 | 89.683 | 126 | 8 | 1 | 1 | 121 | 159 | 284 | 2.82e-70 | 221 |
| Msa0544640 | MtrunA17_Chr4g0042801 | 52.679 | 224 | 86 | 4 | 125 | 347 | 51 | 255 | 6.48e-63 | 201 |
| Msa0544640 | MtrunA17_Chr4g0042801 | 52.941 | 119 | 50 | 2 | 1 | 113 | 136 | 254 | 1.47e-32 | 122 |
| Msa0544640 | MtrunA17_Chr4g0042811 | 36.765 | 204 | 99 | 6 | 151 | 338 | 121 | 310 | 1.03e-23 | 100 |
| Msa0544640 | MtrunA17_Chr4g0042811 | 33.913 | 115 | 56 | 2 | 11 | 105 | 196 | 310 | 1.31e-13 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0544640 | AT3G11810.1 | 40.664 | 241 | 108 | 9 | 133 | 344 | 92 | 326 | 7.37e-35 | 131 |
| Msa0544640 | AT3G11810.1 | 32.374 | 139 | 66 | 3 | 1 | 111 | 188 | 326 | 3.53e-12 | 67.4 |
| Msa0544640 | AT2G03330.1 | 38.506 | 174 | 75 | 8 | 201 | 344 | 192 | 363 | 2.91e-15 | 76.6 |
Find 83 sgRNAs with CRISPR-Local
Find 341 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTCCCTCTTATCTTGTATT+TGG | 0.157615 | 4_1:-33521216 | Msa0544640:CDS |
| GAACTTGCAGATGTGGAATT+TGG | 0.213824 | 4_1:-33525879 | Msa0544640:CDS |
| CCATTTCTATACTGGAATTA+AGG | 0.233291 | 4_1:+33525830 | None:intergenic |
| TTTGGAAGTTAACTTGATTT+TGG | 0.268713 | 4_1:-33521198 | Msa0544640:CDS |
| TTTGAAGAGAAGCTGGAAAT+TGG | 0.294070 | 4_1:-33521132 | Msa0544640:CDS |
| GATGAAGATGATAGATAAAA+AGG | 0.294802 | 4_1:+33521532 | None:intergenic |
| TGTGGTGGTGGAATCAAGTT+GGG | 0.301974 | 4_1:-33526123 | Msa0544640:CDS |
| TTTGAGGAGAAGTTGGAAAT+TGG | 0.309498 | 4_1:-33526090 | Msa0544640:CDS |
| TTTCAACCATGTTCTTGTTT+GGG | 0.309641 | 4_1:-33521085 | Msa0544640:CDS |
| CAAGAACCCAAACAATAAAA+AGG | 0.329416 | 4_1:+33526037 | None:intergenic |
| TTGTTTCTCATCGTTTATCT+AGG | 0.330667 | 4_1:-33521305 | Msa0544640:CDS |
| GGTGATTATGCTAGGGTTGC+TGG | 0.359746 | 4_1:+33521553 | None:intergenic |
| CATGGATAAGTGGTTATAGT+TGG | 0.364651 | 4_1:-33521043 | Msa0544640:CDS |
| ATCTCTTCCATCTTCAGTTA+TGG | 0.374676 | 4_1:-33521506 | Msa0544640:CDS |
| GGTCGAATCACGTTGGGGTT+TGG | 0.387654 | 4_1:-33521159 | Msa0544640:CDS |
| TGTAGTGGTCGAATCACGTT+GGG | 0.390664 | 4_1:-33521165 | Msa0544640:CDS |
| TGGGTCCTTGCAAATGATAT+TGG | 0.411671 | 4_1:-33521066 | Msa0544640:CDS |
| TTGTGGTGGTGGAATCAAGT+TGG | 0.416217 | 4_1:-33526124 | Msa0544640:CDS |
| TTACAATATTGTGGTTAATA+CGG | 0.418130 | 4_1:-33525934 | Msa0544640:CDS |
| AACTTGCAGATGTGGAATTT+GGG | 0.422001 | 4_1:-33525878 | Msa0544640:CDS |
| TTGAACCTTTGAGGAGAAGT+TGG | 0.446020 | 4_1:-33526097 | Msa0544640:CDS |
| GCAGATAAGTGGTTACAGTT+TGG | 0.462258 | 4_1:-33526000 | Msa0544640:intron |
| TGGAACCTTTGAAGAGAAGC+TGG | 0.464598 | 4_1:-33521139 | Msa0544640:CDS |
| AATTTCCAGCTTCTCTTCAA+AGG | 0.469429 | 4_1:+33521134 | None:intergenic |
| ACTTCCAAATACAAGATAAG+AGG | 0.476814 | 4_1:+33521212 | None:intergenic |
| GATGATGCTGGTGGCGAGGA+GGG | 0.477464 | 4_1:+33521385 | None:intergenic |
| TGATGCTGGTGGCGAGGAGG+GGG | 0.479147 | 4_1:+33521387 | None:intergenic |
| ATGGATAAGTGGTTATAGTT+GGG | 0.481970 | 4_1:-33521042 | Msa0544640:CDS |
| TGTGAAAATTGTTGTGGTGG+TGG | 0.482795 | 4_1:-33526135 | Msa0544640:CDS |
| TTTGACCGGTCGATTAAAGA+AGG | 0.493868 | 4_1:+33521448 | None:intergenic |
| TGAAGAAGTGGAATTTGAGA+AGG | 0.497468 | 4_1:-33520916 | Msa0544640:CDS |
| GTGAAAGGAATGAAATGGTT+GGG | 0.498754 | 4_1:-33521110 | Msa0544640:CDS |
| AGTGGAATTTGAGAAGGAAA+AGG | 0.499997 | 4_1:-33520910 | Msa0544640:CDS |
| GGTGAAAGGAATGAAAAGGT+TGG | 0.502939 | 4_1:-33526069 | Msa0544640:CDS |
| GTGATTATGCTAGGGTTGCT+GGG | 0.504845 | 4_1:+33521554 | None:intergenic |
| GTTATATTGCTGCAGATAAG+TGG | 0.508141 | 4_1:-33526011 | Msa0544640:intron |
| TATTATGCTTTACAATATTG+TGG | 0.510311 | 4_1:-33525943 | Msa0544640:CDS |
| CTTTGTGAAAATTGTTGTGG+TGG | 0.510417 | 4_1:-33526138 | Msa0544640:CDS |
| TAACGCTTACTTGATTGCTA+TGG | 0.516323 | 4_1:-33521255 | Msa0544640:CDS |
| AACTGAAGATGGAAGAGATA+AGG | 0.516543 | 4_1:+33521510 | None:intergenic |
| GGGGAAGAAAGAAGTGGTGA+TGG | 0.517035 | 4_1:+33521406 | None:intergenic |
| CCACGCCTTCTTTAATCGAC+CGG | 0.523196 | 4_1:-33521453 | Msa0544640:CDS |
| ACATGGTGAAGTTGAAGAAG+TGG | 0.534587 | 4_1:-33520928 | Msa0544640:CDS |
| AATGAAAGCACAGCAAGTAT+AGG | 0.538340 | 4_1:+33520999 | None:intergenic |
| CTTCCAAATACAAGATAAGA+GGG | 0.540079 | 4_1:+33521213 | None:intergenic |
| ATGATATTGGCATGGATAAG+TGG | 0.544288 | 4_1:-33521053 | Msa0544640:CDS |
| AATTGGTGAAAGGAATGAAA+TGG | 0.546738 | 4_1:-33521115 | Msa0544640:CDS |
| GAGAGTAGAAGTGATGATGC+TGG | 0.546836 | 4_1:+33521373 | None:intergenic |
| AATTTCCAACTTCTCCTCAA+AGG | 0.550029 | 4_1:+33526092 | None:intergenic |
| GAAATCAAGTATTTCTACAA+TGG | 0.552539 | 4_1:+33520864 | None:intergenic |
| GCATGGTGAACTTGCAGATG+TGG | 0.558840 | 4_1:-33525886 | Msa0544640:CDS |
| GTGGTGGTGGAATCAAGTTG+GGG | 0.560027 | 4_1:-33526122 | Msa0544640:CDS |
| GATGGCGCCATAACTGAAGA+TGG | 0.560580 | 4_1:+33521499 | None:intergenic |
| GCTGTAGGTGATGGTGATGA+TGG | 0.562941 | 4_1:+33521481 | None:intergenic |
| GTATTTCTACAATGGAATCA+AGG | 0.563355 | 4_1:+33520872 | None:intergenic |
| AGCATAATAATAGCAAGTAT+AGG | 0.563540 | 4_1:+33525957 | None:intergenic |
| TGCAGATGTGGAATTTGGGA+AGG | 0.563619 | 4_1:-33525874 | Msa0544640:CDS |
| ATGATGCTGGTGGCGAGGAG+GGG | 0.565261 | 4_1:+33521386 | None:intergenic |
| CCATGCCAATATCATTTGCA+AGG | 0.567313 | 4_1:+33521061 | None:intergenic |
| CGTTAGCTATGACTCTTATG+AGG | 0.570654 | 4_1:+33521273 | None:intergenic |
| TGATGATGCTGGTGGCGAGG+AGG | 0.572352 | 4_1:+33521384 | None:intergenic |
| GAGCTTTGTGAAAATTGTTG+TGG | 0.578142 | 4_1:-33526141 | Msa0544640:CDS |
| GGTGAAAGGAATGAAATGGT+TGG | 0.580935 | 4_1:-33521111 | Msa0544640:CDS |
| TTTGGTGAGAGTGGTTGTAG+TGG | 0.583875 | 4_1:-33521180 | Msa0544640:CDS |
| CAAGGACCCAAACAAGAACA+TGG | 0.584733 | 4_1:+33521079 | None:intergenic |
| AGAAGCTGGAAATTGGTGAA+AGG | 0.587171 | 4_1:-33521125 | Msa0544640:CDS |
| AGAAGTTGGAAATTGGTGAA+AGG | 0.587171 | 4_1:-33526083 | Msa0544640:CDS |
| TTGTAGTGGTCGAATCACGT+TGG | 0.604912 | 4_1:-33521166 | Msa0544640:CDS |
| AATTGGTGAAAGGAATGAAA+AGG | 0.608415 | 4_1:-33526073 | Msa0544640:CDS |
| ACTAGCAAATACGTCACAAG+AGG | 0.615825 | 4_1:+33526170 | None:intergenic |
| CCTTGCAAATGATATTGGCA+TGG | 0.621964 | 4_1:-33521061 | Msa0544640:CDS |
| CCGGTCGATTAAAGAAGGCG+TGG | 0.630940 | 4_1:+33521453 | None:intergenic |
| GTGGAAGACGCTGTAGGTGA+TGG | 0.650170 | 4_1:+33521472 | None:intergenic |
| AAGTGATGATGCTGGTGGCG+AGG | 0.655828 | 4_1:+33521381 | None:intergenic |
| ATTTGAGAAGGAAAAGGACG+AGG | 0.664056 | 4_1:-33520904 | Msa0544640:CDS |
| GAAGGCGTGGAAGACGCTGT+AGG | 0.667213 | 4_1:+33521466 | None:intergenic |
| CTAGCAAATACGTCACAAGA+GGG | 0.673611 | 4_1:+33526171 | None:intergenic |
| GGTGTTGTACATACACTGCA+AGG | 0.675211 | 4_1:-33525913 | Msa0544640:CDS |
| ATACACTGCAAGGAGAAGCA+TGG | 0.683446 | 4_1:-33525903 | Msa0544640:CDS |
| ATTATGCTAGGGTTGCTGGG+TGG | 0.688138 | 4_1:+33521557 | None:intergenic |
| GTAGTGGTCGAATCACGTTG+GGG | 0.704457 | 4_1:-33521164 | Msa0544640:CDS |
| ATATACTGCAAAGAGAAACA+TGG | 0.714460 | 4_1:-33520945 | Msa0544640:CDS |
| AGTAGAAGTGATGATGCTGG+TGG | 0.777337 | 4_1:+33521376 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATATATATATATATATA+TGG | - | chr4_1:33522777-33522796 | Msa0544640:intron | 0.0% |
| !! | ATATATATATATATATATAT+GGG | - | chr4_1:33522776-33522795 | Msa0544640:intron | 0.0% |
| !!! | TTTTTTTAATAATAAAATAT+AGG | - | chr4_1:33523197-33523216 | Msa0544640:intron | 0.0% |
| !!! | TTTTTTAATAATAAAATATA+GGG | - | chr4_1:33523198-33523217 | Msa0544640:intron | 0.0% |
| !! | TATATATATATATATATATT+AGG | + | chr4_1:33523312-33523331 | None:intergenic | 0.0% |
| !!! | AAAATTGATTTTGATATATT+TGG | + | chr4_1:33522516-33522535 | None:intergenic | 10.0% |
| !! | TTAATAATCACTTAAAATAA+TGG | + | chr4_1:33523689-33523708 | None:intergenic | 10.0% |
| !!! | TTTTGTGATTAATTAATGTT+TGG | - | chr4_1:33521336-33521355 | Msa0544640:CDS | 15.0% |
| !! | AAAAAAACTCATTATTACAA+AGG | + | chr4_1:33521440-33521459 | None:intergenic | 15.0% |
| !!! | GTATTTTTATTCTTTTTCAA+AGG | + | chr4_1:33521511-33521530 | None:intergenic | 15.0% |
| !!! | ACGTTTTCAATAATATTTAA+AGG | - | chr4_1:33521839-33521858 | Msa0544640:intron | 15.0% |
| !! | AATATTTAAAGGATATTTGA+AGG | - | chr4_1:33521850-33521869 | Msa0544640:intron | 15.0% |
| !! | TAATAATATGCATATTAAGA+TGG | - | chr4_1:33522104-33522123 | Msa0544640:intron | 15.0% |
| !! | AATAATATGCATATTAAGAT+GGG | - | chr4_1:33522105-33522124 | Msa0544640:intron | 15.0% |
| !! | TTTCTTTATGATATTTGTAT+CGG | - | chr4_1:33522366-33522385 | Msa0544640:intron | 15.0% |
| !!! | TATGTAGTTTTAGAATTTAA+AGG | + | chr4_1:33522434-33522453 | None:intergenic | 15.0% |
| !!! | TATTTTTATTTTTGTGGATT+CGG | + | chr4_1:33522996-33523015 | None:intergenic | 15.0% |
| !!! | TATTTTTATTTTTGTGGATT+CGG | + | chr4_1:33522996-33523015 | None:intergenic | 15.0% |
| !!! | CACTATTAATTTTTTTCATA+AGG | + | chr4_1:33524127-33524146 | None:intergenic | 15.0% |
| !! | AAAAAAATAAAAAATAGTCG+TGG | + | chr4_1:33524529-33524548 | None:intergenic | 15.0% |
| !! | TTAAAATAAAAATATAGTCG+TGG | + | chr4_1:33524562-33524581 | None:intergenic | 15.0% |
| !!! | TTTATTTTAATAAAAAGACC+AGG | - | chr4_1:33524572-33524591 | Msa0544640:intron | 15.0% |
| !! | AAATAATCAACTTAAATTGT+AGG | + | chr4_1:33525222-33525241 | None:intergenic | 15.0% |
| !! | TATTATGCTTTACAATATTG+TGG | - | chr4_1:33521132-33521151 | Msa0544640:CDS | 20.0% |
| !! | TTACAATATTGTGGTTAATA+CGG | - | chr4_1:33521141-33521160 | Msa0544640:CDS | 20.0% |
| !! | ACATAATTAATTGATCACAA+AGG | + | chr4_1:33521378-33521397 | None:intergenic | 20.0% |
| !! | TATTAAATAATAACGTAGGT+TGG | + | chr4_1:33521628-33521647 | None:intergenic | 20.0% |
| !!! | ATGATTTTAGTTAAAAGTGT+AGG | - | chr4_1:33521721-33521740 | Msa0544640:intron | 20.0% |
| !!! | TATACCAATTTATTGATTTG+TGG | + | chr4_1:33522086-33522105 | None:intergenic | 20.0% |
| !!! | CACAGTTGATAAATTTTAAT+TGG | + | chr4_1:33524346-33524365 | None:intergenic | 20.0% |
| !!! | ATTTTGTTAGAATTTGGTTT+TGG | + | chr4_1:33524414-33524433 | None:intergenic | 20.0% |
| !!! | TGCTTAATTTTGTTAGAATT+TGG | + | chr4_1:33524420-33524439 | None:intergenic | 20.0% |
| !! | AAATGGAACTTAAAACATTT+AGG | + | chr4_1:33524897-33524916 | None:intergenic | 20.0% |
| !! | TTCTAATAAATGCATGAAAA+TGG | + | chr4_1:33524914-33524933 | None:intergenic | 20.0% |
| !! | TTGTCAACCTTTTTATTGTT+TGG | - | chr4_1:33521031-33521050 | Msa0544640:CDS | 25.0% |
| !! | TGTCAACCTTTTTATTGTTT+GGG | - | chr4_1:33521032-33521051 | Msa0544640:CDS | 25.0% |
| ! | AGCATAATAATAGCAAGTAT+AGG | + | chr4_1:33521121-33521140 | None:intergenic | 25.0% |
| ! | TTATTACAAAGGATATACCT+TGG | + | chr4_1:33521429-33521448 | None:intergenic | 25.0% |
| ! | AGCGTATTAAATAATAACGT+AGG | + | chr4_1:33521632-33521651 | None:intergenic | 25.0% |
| ! | GTTATTATTTAATACGCTTG+TGG | - | chr4_1:33521634-33521653 | Msa0544640:intron | 25.0% |
| ! | CCATTTGATTGAATGATTTA+TGG | + | chr4_1:33521673-33521692 | None:intergenic | 25.0% |
| ! | CCATAAATCATTCAATCAAA+TGG | - | chr4_1:33521670-33521689 | Msa0544640:intron | 25.0% |
| !! | TTTAGTTAAAAGTGTAGGAA+AGG | - | chr4_1:33521726-33521745 | Msa0544640:intron | 25.0% |
| ! | ATAATTTACCAAGATCATAG+TGG | - | chr4_1:33522053-33522072 | Msa0544640:intron | 25.0% |
| !!! | ATCAATTTTAACTGTTCCAA+AGG | - | chr4_1:33522527-33522546 | Msa0544640:intron | 25.0% |
| !! | TAGCTAGATTTAGCTTATAA+GGG | - | chr4_1:33522574-33522593 | Msa0544640:intron | 25.0% |
| ! | TTCATGATATTTGGTCAATA+TGG | + | chr4_1:33522623-33522642 | None:intergenic | 25.0% |
| ! | TTGACCAAATATCATGAATA+TGG | - | chr4_1:33522625-33522644 | Msa0544640:intron | 25.0% |
| ! | AGAACCATATTCATGATATT+TGG | + | chr4_1:33522632-33522651 | None:intergenic | 25.0% |
| !! | CCAAAAATAGATATGGTTTT+TGG | + | chr4_1:33522679-33522698 | None:intergenic | 25.0% |
| !! | CCAAAAACCATATCTATTTT+TGG | - | chr4_1:33522676-33522695 | Msa0544640:intron | 25.0% |
| ! | TAATAATAAAATATAGGGCC+CGG | - | chr4_1:33523203-33523222 | Msa0544640:intron | 25.0% |
| !! | TAATTTTCCATTCCATCATT+TGG | - | chr4_1:33523510-33523529 | Msa0544640:intron | 25.0% |
| !! | AATGATGTTTTTCCAATTGA+GGG | + | chr4_1:33523627-33523646 | None:intergenic | 25.0% |
| !! | TAATGATGTTTTTCCAATTG+AGG | + | chr4_1:33523628-33523647 | None:intergenic | 25.0% |
| ! | TCACTTAAAATAATGGTATC+AGG | + | chr4_1:33523682-33523701 | None:intergenic | 25.0% |
| ! | AATCTTCAGATAATCAGAAT+AGG | - | chr4_1:33523976-33523995 | Msa0544640:intron | 25.0% |
| !! | ACGTAGTTGATATACAATTA+TGG | - | chr4_1:33524613-33524632 | Msa0544640:intron | 25.0% |
| !! | CGTAGTTGATATACAATTAT+GGG | - | chr4_1:33524614-33524633 | Msa0544640:intron | 25.0% |
| ! | GATGACAAGTATTAAAGATT+TGG | + | chr4_1:33525271-33525290 | None:intergenic | 25.0% |
| ! | AATCTTTAATACTTGTCATC+AGG | - | chr4_1:33525271-33525290 | Msa0544640:intron | 25.0% |
| ! | ATCTTTAATACTTGTCATCA+GGG | - | chr4_1:33525272-33525291 | Msa0544640:intron | 25.0% |
| !! | ATGTATACTTCGGTTTTTAT+AGG | + | chr4_1:33525307-33525326 | None:intergenic | 25.0% |
| ! | TATAAAAACCGAAGTATACA+TGG | - | chr4_1:33525306-33525325 | Msa0544640:intron | 25.0% |
| ! | ATAAAAAGGTGATTATGCTA+GGG | + | chr4_1:33525532-33525551 | None:intergenic | 25.0% |
| ! | GATGAAGATGATAGATAAAA+AGG | + | chr4_1:33525546-33525565 | None:intergenic | 25.0% |
| !! | TTTTTCTTGATGTTTCTCAT+TGG | - | chr4_1:33525740-33525759 | Msa0544640:intron | 25.0% |
| !!! | TTTGGAAGTTAACTTGATTT+TGG | - | chr4_1:33525877-33525896 | Msa0544640:CDS | 25.0% |
| AATTGGTGAAAGGAATGAAA+AGG | - | chr4_1:33521002-33521021 | Msa0544640:CDS | 30.0% | |
| CAAGAACCCAAACAATAAAA+AGG | + | chr4_1:33521041-33521060 | None:intergenic | 30.0% | |
| !! | CTTTTTATTGTTTGGGTTCT+TGG | - | chr4_1:33521039-33521058 | Msa0544640:CDS | 30.0% |
| AATTTGGGAAGGAAAAAGAT+GGG | - | chr4_1:33521212-33521231 | Msa0544640:CDS | 30.0% | |
| CCATTTCTATACTGGAATTA+AGG | + | chr4_1:33521248-33521267 | None:intergenic | 30.0% | |
| CCTTAATTCCAGTATAGAAA+TGG | - | chr4_1:33521245-33521264 | Msa0544640:CDS | 30.0% | |
| ATCATCAACCATTTCTATAC+TGG | + | chr4_1:33521256-33521275 | None:intergenic | 30.0% | |
| !!! | TTCCTATCTTTTTCAAACCA+AGG | - | chr4_1:33521409-33521428 | Msa0544640:CDS | 30.0% |
| ! | TACCTTGGTTTGAAAAAGAT+AGG | + | chr4_1:33521414-33521433 | None:intergenic | 30.0% |
| ! | GGTCATGAATTTATCAGTTT+TGG | - | chr4_1:33521747-33521766 | Msa0544640:intron | 30.0% |
| !! | ATGAATTTATCAGTTTTGGC+CGG | - | chr4_1:33521751-33521770 | Msa0544640:intron | 30.0% |
| CATAGCATCAACGTTAAAAT+GGG | - | chr4_1:33521943-33521962 | Msa0544640:intron | 30.0% | |
| AGCACCACAAATCAATAAAT+TGG | - | chr4_1:33522079-33522098 | Msa0544640:intron | 30.0% | |
| TACCGTAGAAAATATGATGA+TGG | - | chr4_1:33522217-33522236 | Msa0544640:intron | 30.0% | |
| ! | CACCATCATCATATTTTCTA+CGG | + | chr4_1:33522222-33522241 | None:intergenic | 30.0% |
| !! | AGAAAATATGATGATGGTGA+TGG | - | chr4_1:33522223-33522242 | Msa0544640:intron | 30.0% |
| GAAATGTAACCAACGTTTAT+CGG | + | chr4_1:33522350-33522369 | None:intergenic | 30.0% | |
| ! | TGTATGTTTGATTTCACCTT+TGG | + | chr4_1:33522546-33522565 | None:intergenic | 30.0% |
| GAAATCAAACATACACTTAG+AGG | - | chr4_1:33522551-33522570 | Msa0544640:intron | 30.0% | |
| ! | GTAGCTAGATTTAGCTTATA+AGG | - | chr4_1:33522573-33522592 | Msa0544640:intron | 30.0% |
| TTGGAAGCCAAAAATAGATA+TGG | + | chr4_1:33522686-33522705 | None:intergenic | 30.0% | |
| CAACACATTTAGACTTTGTT+TGG | - | chr4_1:33523428-33523447 | Msa0544640:intron | 30.0% | |
| ATCATAAAACGTCCAAATGA+TGG | + | chr4_1:33523525-33523544 | None:intergenic | 30.0% | |
| ! | ATCATTTGGACGTTTTATGA+TGG | - | chr4_1:33523524-33523543 | Msa0544640:intron | 30.0% |
| TCAATTTCCAAACAATGGAA+GGG | + | chr4_1:33523565-33523584 | None:intergenic | 30.0% | |
| TTCAATTTCCAAACAATGGA+AGG | + | chr4_1:33523566-33523585 | None:intergenic | 30.0% | |
| TCCATTGTTTGGAAATTGAA+TGG | - | chr4_1:33523566-33523585 | Msa0544640:intron | 30.0% | |
| TCCATTCAATTTCCAAACAA+TGG | + | chr4_1:33523570-33523589 | None:intergenic | 30.0% | |
| AAATAAGCCCATAAAAAACG+AGG | - | chr4_1:33524177-33524196 | Msa0544640:intron | 30.0% | |
| AATAAGCCCATAAAAAACGA+GGG | - | chr4_1:33524178-33524197 | Msa0544640:intron | 30.0% | |
| !!! | TTTTTGCCCTCGTTTTTTAT+GGG | + | chr4_1:33524187-33524206 | None:intergenic | 30.0% |
| AGAGATATAACATTGCTCTT+TGG | + | chr4_1:33524210-33524229 | None:intergenic | 30.0% | |
| !! | TGTTGTTTAGCTCTTTCTAT+TGG | + | chr4_1:33524457-33524476 | None:intergenic | 30.0% |
| AAGCTAAGTAATAATAGTCC+TGG | + | chr4_1:33524593-33524612 | None:intergenic | 30.0% | |
| CATTTAGGCATTAAGAGAAA+GGG | + | chr4_1:33524882-33524901 | None:intergenic | 30.0% | |
| ACATTTAGGCATTAAGAGAA+AGG | + | chr4_1:33524883-33524902 | None:intergenic | 30.0% | |
| TAGAACTTAGAAGTTTCACA+CGG | - | chr4_1:33524929-33524948 | Msa0544640:intron | 30.0% | |
| !!! | ATTGCTGTCTTTTTTCTTAG+AGG | - | chr4_1:33525174-33525193 | Msa0544640:intron | 30.0% |
| !! | CTTTTTCACCATGTATACTT+CGG | + | chr4_1:33525317-33525336 | None:intergenic | 30.0% |
| GATAAAAAGGTGATTATGCT+AGG | + | chr4_1:33525533-33525552 | None:intergenic | 30.0% | |
| !!! | ATTGCTTCTTTTAGTTTGAC+CGG | + | chr4_1:33525644-33525663 | None:intergenic | 30.0% |
| ! | TTGTTTCTCATCGTTTATCT+AGG | - | chr4_1:33525770-33525789 | Msa0544640:intron | 30.0% |
| CTTCCAAATACAAGATAAGA+GGG | + | chr4_1:33525865-33525884 | None:intergenic | 30.0% | |
| ACTTCCAAATACAAGATAAG+AGG | + | chr4_1:33525866-33525885 | None:intergenic | 30.0% | |
| AATTGGTGAAAGGAATGAAA+TGG | - | chr4_1:33521002-33521021 | Msa0544640:CDS | 30.0% | |
| ! | TTTTCAACCATGTTCTTGTT+TGG | - | chr4_1:33525989-33526008 | Msa0544640:CDS | 30.0% |
| ! | TTTCAACCATGTTCTTGTTT+GGG | - | chr4_1:33525990-33526009 | Msa0544640:CDS | 30.0% |
| ATGGATAAGTGGTTATAGTT+GGG | - | chr4_1:33526033-33526052 | Msa0544640:intron | 30.0% | |
| ATATACTGCAAAGAGAAACA+TGG | - | chr4_1:33526130-33526149 | Msa0544640:CDS | 30.0% | |
| ! | GAGCTTTGTGAAAATTGTTG+TGG | - | chr4_1:33520934-33520953 | Msa0544640:CDS | 35.0% |
| CTTTGTGAAAATTGTTGTGG+TGG | - | chr4_1:33520937-33520956 | Msa0544640:CDS | 35.0% | |
| AATTTCCAACTTCTCCTCAA+AGG | + | chr4_1:33520986-33521005 | None:intergenic | 35.0% | |
| TTTGAGGAGAAGTTGGAAAT+TGG | - | chr4_1:33520985-33521004 | Msa0544640:CDS | 35.0% | |
| AGAAGTTGGAAATTGGTGAA+AGG | - | chr4_1:33520992-33521011 | Msa0544640:CDS | 35.0% | |
| GTTATATTGCTGCAGATAAG+TGG | - | chr4_1:33521064-33521083 | Msa0544640:CDS | 35.0% | |
| AACTTGCAGATGTGGAATTT+GGG | - | chr4_1:33521197-33521216 | Msa0544640:CDS | 35.0% | |
| GAATTTGGGAAGGAAAAAGA+TGG | - | chr4_1:33521211-33521230 | Msa0544640:CDS | 35.0% | |
| ATTTGGGAAGGAAAAAGATG+GGG | - | chr4_1:33521213-33521232 | Msa0544640:CDS | 35.0% | |
| AAACAAAGACAACTTAGACG+AGG | + | chr4_1:33521284-33521303 | None:intergenic | 35.0% | |
| TTGAAGGTTACTTACAATCG+AGG | - | chr4_1:33521866-33521885 | Msa0544640:intron | 35.0% | |
| !! | CCATTTTAACGTTGATGCTA+TGG | + | chr4_1:33521945-33521964 | None:intergenic | 35.0% |
| CCATAGCATCAACGTTAAAA+TGG | - | chr4_1:33521942-33521961 | Msa0544640:intron | 35.0% | |
| ATTACATGCTAATCCTGTAC+CGG | + | chr4_1:33522001-33522020 | None:intergenic | 35.0% | |
| ! | CAGGATTAGCATGTAATTCA+TGG | - | chr4_1:33522004-33522023 | Msa0544640:intron | 35.0% |
| ATTTACCAAGATCATAGTGG+AGG | - | chr4_1:33522056-33522075 | Msa0544640:intron | 35.0% | |
| AACCATGAATAGTGCATAGT+AGG | + | chr4_1:33522196-33522215 | None:intergenic | 35.0% | |
| CTTTAGTTGGGTTAAACGAA+CGG | + | chr4_1:33522261-33522280 | None:intergenic | 35.0% | |
| GTTCGTTTAACCCAACTAAA+GGG | - | chr4_1:33522260-33522279 | Msa0544640:intron | 35.0% | |
| TTCGTTTAACCCAACTAAAG+GGG | - | chr4_1:33522261-33522280 | Msa0544640:intron | 35.0% | |
| AAGTTTCTTCCCCTTTAGTT+GGG | + | chr4_1:33522273-33522292 | None:intergenic | 35.0% | |
| TAAGTTTCTTCCCCTTTAGT+TGG | + | chr4_1:33522274-33522293 | None:intergenic | 35.0% | |
| AGGGGAAGAAACTTATTCAA+TGG | - | chr4_1:33522279-33522298 | Msa0544640:intron | 35.0% | |
| AAAAGCAACCCCAAAGATTT+GGG | + | chr4_1:33522326-33522345 | None:intergenic | 35.0% | |
| AAAAAGCAACCCCAAAGATT+TGG | + | chr4_1:33522327-33522346 | None:intergenic | 35.0% | |
| !!! | TTGCTTTTTCCGATAAACGT+TGG | - | chr4_1:33522338-33522357 | Msa0544640:intron | 35.0% |
| !!! | AGATATGGTTTTTGGTAGCT+CGG | + | chr4_1:33522671-33522690 | None:intergenic | 35.0% |
| ACAAGAACTTTGCTACAAGA+TGG | + | chr4_1:33522716-33522735 | None:intergenic | 35.0% | |
| ATATATATGCCAACACACGT+TGG | - | chr4_1:33522820-33522839 | Msa0544640:intron | 35.0% | |
| !!! | ACACCCACTAGTTTTTATGT+GGG | - | chr4_1:33523123-33523142 | Msa0544640:intron | 35.0% |
| ACTCCCACATAAAAACTAGT+GGG | + | chr4_1:33523129-33523148 | None:intergenic | 35.0% | |
| ATTTCTCGTTGTGTTGTGTT+TGG | - | chr4_1:33523401-33523420 | Msa0544640:intron | 35.0% | |
| ATAGAACAAAGTCAGTTGAG+CGG | - | chr4_1:33523451-33523470 | Msa0544640:intron | 35.0% | |
| AATGGAGTAGCATGAGATAA+CGG | - | chr4_1:33523479-33523498 | Msa0544640:intron | 35.0% | |
| ! | AAAACGTCCAAATGATGGAA+TGG | + | chr4_1:33523520-33523539 | None:intergenic | 35.0% |
| !! | TTGGACGTTTTATGATGGAA+TGG | - | chr4_1:33523529-33523548 | Msa0544640:intron | 35.0% |
| AAAGTTTCCCTTCCATTGTT+TGG | - | chr4_1:33523555-33523574 | Msa0544640:intron | 35.0% | |
| ! | ATTGCTTTGTTACCCTCAAT+TGG | - | chr4_1:33523612-33523631 | Msa0544640:intron | 35.0% |
| !! | CTCAATTCATCGGTTCAAAT+CGG | - | chr4_1:33523867-33523886 | Msa0544640:intron | 35.0% |
| TTCAAATCGGTTAACAACTG+TGG | - | chr4_1:33523880-33523899 | Msa0544640:intron | 35.0% | |
| TCAAATCGGTTAACAACTGT+GGG | - | chr4_1:33523881-33523900 | Msa0544640:intron | 35.0% | |
| TAGGAATATGCATGAGATTG+TGG | - | chr4_1:33523995-33524014 | Msa0544640:intron | 35.0% | |
| AGGAATATGCATGAGATTGT+GGG | - | chr4_1:33523996-33524015 | Msa0544640:intron | 35.0% | |
| GAAGACAACTAGCTAGTTAA+TGG | - | chr4_1:33524049-33524068 | Msa0544640:intron | 35.0% | |
| ! | AGTTAATGGTGATGAGGAAT+AGG | - | chr4_1:33524063-33524082 | Msa0544640:intron | 35.0% |
| !!! | GTTTTTGCCCTCGTTTTTTA+TGG | + | chr4_1:33524188-33524207 | None:intergenic | 35.0% |
| ! | GAAAATGAGTTGGAAGATGA+GGG | + | chr4_1:33525480-33525499 | None:intergenic | 35.0% |
| ! | TGAAAATGAGTTGGAAGATG+AGG | + | chr4_1:33525481-33525500 | None:intergenic | 35.0% |
| !! | GAAGGTGTTTGAAAATGAGT+TGG | + | chr4_1:33525490-33525509 | None:intergenic | 35.0% |
| AACTGAAGATGGAAGAGATA+AGG | + | chr4_1:33525568-33525587 | None:intergenic | 35.0% | |
| ATCTCTTCCATCTTCAGTTA+TGG | - | chr4_1:33525569-33525588 | Msa0544640:intron | 35.0% | |
| TAACGCTTACTTGATTGCTA+TGG | - | chr4_1:33525820-33525839 | Msa0544640:intron | 35.0% | |
| ACTCCCTCTTATCTTGTATT+TGG | - | chr4_1:33525859-33525878 | Msa0544640:CDS | 35.0% | |
| !! | TAACTTGATTTTGGTGAGAG+TGG | - | chr4_1:33525886-33525905 | Msa0544640:CDS | 35.0% |
| AATTTCCAGCTTCTCTTCAA+AGG | + | chr4_1:33525944-33525963 | None:intergenic | 35.0% | |
| TTTGAAGAGAAGCTGGAAAT+TGG | - | chr4_1:33525943-33525962 | Msa0544640:CDS | 35.0% | |
| GTGAAAGGAATGAAATGGTT+GGG | - | chr4_1:33525965-33525984 | Msa0544640:CDS | 35.0% | |
| ATGATATTGGCATGGATAAG+TGG | - | chr4_1:33526022-33526041 | Msa0544640:intron | 35.0% | |
| CATGGATAAGTGGTTATAGT+TGG | - | chr4_1:33526032-33526051 | Msa0544640:intron | 35.0% | |
| ! | AATGAAAGCACAGCAAGTAT+AGG | + | chr4_1:33526079-33526098 | None:intergenic | 35.0% |
| TGAAGAAGTGGAATTTGAGA+AGG | - | chr4_1:33526159-33526178 | Msa0544640:CDS | 35.0% | |
| AGTGGAATTTGAGAAGGAAA+AGG | - | chr4_1:33526165-33526184 | Msa0544640:CDS | 35.0% | |
| CTAGCAAATACGTCACAAGA+GGG | + | chr4_1:33520907-33520926 | None:intergenic | 40.0% | |
| ACTAGCAAATACGTCACAAG+AGG | + | chr4_1:33520908-33520927 | None:intergenic | 40.0% | |
| TGTGAAAATTGTTGTGGTGG+TGG | - | chr4_1:33520940-33520959 | Msa0544640:CDS | 40.0% | |
| ! | TTGAACCTTTGAGGAGAAGT+TGG | - | chr4_1:33520978-33520997 | Msa0544640:CDS | 40.0% |
| GGTGAAAGGAATGAAAAGGT+TGG | - | chr4_1:33521006-33521025 | Msa0544640:CDS | 40.0% | |
| GCAGATAAGTGGTTACAGTT+TGG | - | chr4_1:33521075-33521094 | Msa0544640:CDS | 40.0% | |
| GAACTTGCAGATGTGGAATT+TGG | - | chr4_1:33521196-33521215 | Msa0544640:CDS | 40.0% | |
| !! | AGTTTGACTTGTATTCTCGC+CGG | + | chr4_1:33521773-33521792 | None:intergenic | 40.0% |
| ATACTAGCTAGAGAAACCAC+CGG | - | chr4_1:33521979-33521998 | Msa0544640:intron | 40.0% | |
| GTCCTACTATGCACTATTCA+TGG | - | chr4_1:33522191-33522210 | Msa0544640:intron | 40.0% | |
| CGTTCGTTTAACCCAACTAA+AGG | - | chr4_1:33522259-33522278 | Msa0544640:intron | 40.0% | |
| ! | TGCTTTTGGTCCCAAATCTT+TGG | - | chr4_1:33522313-33522332 | Msa0544640:intron | 40.0% |
| ! | GCTTTTGGTCCCAAATCTTT+GGG | - | chr4_1:33522314-33522333 | Msa0544640:intron | 40.0% |
| ! | CTTTTGGTCCCAAATCTTTG+GGG | - | chr4_1:33522315-33522334 | Msa0544640:intron | 40.0% |
| TTTGGTCAATATGGTACCAG+AGG | + | chr4_1:33522614-33522633 | None:intergenic | 40.0% | |
| !!! | GATATGGTTTTTGGTAGCTC+GGG | + | chr4_1:33522670-33522689 | None:intergenic | 40.0% |
| GCTACAAGATGGAAGAAGAT+TGG | + | chr4_1:33522705-33522724 | None:intergenic | 40.0% | |
| !! | TATTTTTGTGGATTCGGCTC+CGG | + | chr4_1:33522990-33523009 | None:intergenic | 40.0% |
| !!! | CACACCCACTAGTTTTTATG+TGG | - | chr4_1:33523122-33523141 | Msa0544640:intron | 40.0% |
| CACTCCCACATAAAAACTAG+TGG | + | chr4_1:33523130-33523149 | None:intergenic | 40.0% | |
| TAATAAAATATAGGGCCCGG+AGG | - | chr4_1:33523206-33523225 | Msa0544640:intron | 40.0% | |
| !! | TATTTTTGTGGATTCGGCTC+CGG | + | chr4_1:33522990-33523009 | None:intergenic | 40.0% |
| !! | AGTAGCATGAGATAACGGAA+TGG | - | chr4_1:33523484-33523503 | Msa0544640:intron | 40.0% |
| TCTTGCCAAGCTCAATTCAT+CGG | - | chr4_1:33523857-33523876 | Msa0544640:intron | 40.0% | |
| TTGAACCGATGAATTGAGCT+TGG | + | chr4_1:33523865-33523884 | None:intergenic | 40.0% | |
| ACTGTGGGACAAATTACATG+CGG | - | chr4_1:33523896-33523915 | Msa0544640:intron | 40.0% | |
| GGAATATGCATGAGATTGTG+GGG | - | chr4_1:33523997-33524016 | Msa0544640:intron | 40.0% | |
| AGAGAATGCGACCATAAGAA+AGG | - | chr4_1:33524021-33524040 | Msa0544640:intron | 40.0% | |
| GTCTTCTGTCTCCTTTCTTA+TGG | + | chr4_1:33524035-33524054 | None:intergenic | 40.0% | |
| ! | CTAGCTAGTTAATGGTGATG+AGG | - | chr4_1:33524057-33524076 | Msa0544640:intron | 40.0% |
| ACGAGTTTACAACTACTCTC+TGG | - | chr4_1:33524094-33524113 | Msa0544640:intron | 40.0% | |
| ! | GATGAAGCGAAAAAGAGTAC+AGG | - | chr4_1:33524146-33524165 | Msa0544640:intron | 40.0% |
| GGCAAATAGTGCATTGTGAT+TGG | + | chr4_1:33524273-33524292 | None:intergenic | 40.0% | |
| GCACTATTTGCCACAATTCA+AGG | - | chr4_1:33524281-33524300 | Msa0544640:intron | 40.0% | |
| CTATTTGCCACAATTCAAGG+AGG | - | chr4_1:33524284-33524303 | Msa0544640:intron | 40.0% | |
| TGTGGCTGAAAAATAGGAAG+TGG | - | chr4_1:33524307-33524326 | Msa0544640:intron | 40.0% | |
| ! | GAGAGAAGATCCCACATTTT+TGG | + | chr4_1:33525374-33525393 | None:intergenic | 40.0% |
| TAGAGATTAAGGTAGTGACG+AGG | + | chr4_1:33525425-33525444 | None:intergenic | 40.0% | |
| GGAAGATGAGGTAGAGATTA+AGG | + | chr4_1:33525436-33525455 | None:intergenic | 40.0% | |
| TTTGACCGGTCGATTAAAGA+AGG | + | chr4_1:33525630-33525649 | None:intergenic | 40.0% | |
| CGTTAGCTATGACTCTTATG+AGG | + | chr4_1:33525805-33525824 | None:intergenic | 40.0% | |
| AGAAGCTGGAAATTGGTGAA+AGG | - | chr4_1:33525950-33525969 | Msa0544640:CDS | 40.0% | |
| GGTGAAAGGAATGAAATGGT+TGG | - | chr4_1:33525964-33525983 | Msa0544640:CDS | 40.0% | |
| TGGGTCCTTGCAAATGATAT+TGG | - | chr4_1:33526009-33526028 | Msa0544640:intron | 40.0% | |
| CCATGCCAATATCATTTGCA+AGG | + | chr4_1:33526017-33526036 | None:intergenic | 40.0% | |
| CCTTGCAAATGATATTGGCA+TGG | - | chr4_1:33526014-33526033 | Msa0544640:intron | 40.0% | |
| !! | TAGTTGGGTTCTGATTTTCG+TGG | - | chr4_1:33526048-33526067 | Msa0544640:CDS | 40.0% |
| ACATGGTGAAGTTGAAGAAG+TGG | - | chr4_1:33526147-33526166 | Msa0544640:CDS | 40.0% | |
| ATTTGAGAAGGAAAAGGACG+AGG | - | chr4_1:33526171-33526190 | Msa0544640:CDS | 40.0% | |
| !! | TTGTGGTGGTGGAATCAAGT+TGG | - | chr4_1:33520951-33520970 | Msa0544640:CDS | 45.0% |
| !! | TGTGGTGGTGGAATCAAGTT+GGG | - | chr4_1:33520952-33520971 | Msa0544640:CDS | 45.0% |
| !!! | GTTGGGGTTTTGAACCTTTG+AGG | - | chr4_1:33520969-33520988 | Msa0544640:CDS | 45.0% |
| ! | GGTGTTGTACATACACTGCA+AGG | - | chr4_1:33521162-33521181 | Msa0544640:CDS | 45.0% |
| ATACACTGCAAGGAGAAGCA+TGG | - | chr4_1:33521172-33521191 | Msa0544640:CDS | 45.0% | |
| TGCAGATGTGGAATTTGGGA+AGG | - | chr4_1:33521201-33521220 | Msa0544640:CDS | 45.0% | |
| GGTGGTTTCTCTAGCTAGTA+TGG | + | chr4_1:33521980-33521999 | None:intergenic | 45.0% | |
| GCATATTAAGATGGGCACGA+AGG | - | chr4_1:33522113-33522132 | Msa0544640:intron | 45.0% | |
| ! | TCTGTGTGTTGCTGGTGTAT+TGG | - | chr4_1:33522164-33522183 | Msa0544640:intron | 45.0% |
| TTGGGACCAAAAGCAGTTAG+CGG | + | chr4_1:33522308-33522327 | None:intergenic | 45.0% | |
| GGTCTAATCGATTGTTCCTC+TGG | - | chr4_1:33522595-33522614 | Msa0544640:intron | 45.0% | |
| !! | TTGGCTCAGTTGGTAAGGAA+CGG | - | chr4_1:33522839-33522858 | Msa0544640:intron | 45.0% |
| TCGAACACACAACCTTCTGA+GGG | + | chr4_1:33522873-33522892 | None:intergenic | 45.0% | |
| ATCGAACACACAACCTTCTG+AGG | + | chr4_1:33522874-33522893 | None:intergenic | 45.0% | |
| TACCTCTGTAAGTGCCCTTT+GGG | - | chr4_1:33522934-33522953 | Msa0544640:intron | 45.0% | |
| ! | AGGAGGTGTGGCTGAAAAAT+AGG | - | chr4_1:33524301-33524320 | Msa0544640:intron | 45.0% |
| !!! | AGTCGTGGTCATGCTACTTT+TGG | + | chr4_1:33524514-33524533 | None:intergenic | 45.0% |
| ACACCATGGCTCCAAAAATG+TGG | - | chr4_1:33525360-33525379 | Msa0544640:intron | 45.0% | |
| CACCATGGCTCCAAAAATGT+GGG | - | chr4_1:33525361-33525380 | Msa0544640:intron | 45.0% | |
| !!! | ATCCCACATTTTTGGAGCCA+TGG | + | chr4_1:33525366-33525385 | None:intergenic | 45.0% |
| GTGATTATGCTAGGGTTGCT+GGG | + | chr4_1:33525524-33525543 | None:intergenic | 45.0% | |
| ! | AGTAGAAGTGATGATGCTGG+TGG | + | chr4_1:33525702-33525721 | None:intergenic | 45.0% |
| ! | GAGAGTAGAAGTGATGATGC+TGG | + | chr4_1:33525705-33525724 | None:intergenic | 45.0% |
| TTTGGTGAGAGTGGTTGTAG+TGG | - | chr4_1:33525895-33525914 | Msa0544640:CDS | 45.0% | |
| TTGTAGTGGTCGAATCACGT+TGG | - | chr4_1:33525909-33525928 | Msa0544640:CDS | 45.0% | |
| TGTAGTGGTCGAATCACGTT+GGG | - | chr4_1:33525910-33525929 | Msa0544640:CDS | 45.0% | |
| ! | TGGAACCTTTGAAGAGAAGC+TGG | - | chr4_1:33525936-33525955 | Msa0544640:CDS | 45.0% |
| CAAGGACCCAAACAAGAACA+TGG | + | chr4_1:33525999-33526018 | None:intergenic | 45.0% | |
| !!! | TTTTTTTTTTTTTTTTTTGA+AGG | - | chr4_1:33521455-33521474 | Msa0544640:CDS | 5.0% |
| !!! | ATATTTTATTTTTATTTTTG+TGG | + | chr4_1:33523002-33523021 | None:intergenic | 5.0% |
| !!! | TATATATATTTTTATTTTTG+TGG | + | chr4_1:33523266-33523285 | None:intergenic | 5.0% |
| !! | TCAAAAATAAAATAAAATAA+TGG | - | chr4_1:33524648-33524667 | Msa0544640:intron | 5.0% |
| !! | CAAAAATAAAATAAAATAAT+GGG | - | chr4_1:33524649-33524668 | Msa0544640:intron | 5.0% |
| !! | GTGGTGGTGGAATCAAGTTG+GGG | - | chr4_1:33520953-33520972 | Msa0544640:CDS | 50.0% |
| GCATGGTGAACTTGCAGATG+TGG | - | chr4_1:33521189-33521208 | Msa0544640:CDS | 50.0% | |
| ACATGCTAATCCTGTACCGG+TGG | + | chr4_1:33521998-33522017 | None:intergenic | 50.0% | |
| GTGCTCCTCCACTATGATCT+TGG | + | chr4_1:33522064-33522083 | None:intergenic | 50.0% | |
| ATTAAGATGGGCACGAAGGC+TGG | - | chr4_1:33522117-33522136 | Msa0544640:intron | 50.0% | |
| ACACACAGACTCAGTCGTGA+TGG | + | chr4_1:33522153-33522172 | None:intergenic | 50.0% | |
| ! | TGGTCACCGCTAACTGCTTT+TGG | - | chr4_1:33522299-33522318 | Msa0544640:intron | 50.0% |
| !! | ACACGTTGGCTCAGTTGGTA+AGG | - | chr4_1:33522834-33522853 | Msa0544640:intron | 50.0% |
| CGAACACACAACCTTCTGAG+GGG | + | chr4_1:33522872-33522891 | None:intergenic | 50.0% | |
| GTACCTCTGTAAGTGCCCTT+TGG | - | chr4_1:33522933-33522952 | Msa0544640:intron | 50.0% | |
| ACAAAGTCAGTTGAGCGGAG+TGG | - | chr4_1:33523456-33523475 | Msa0544640:intron | 50.0% | |
| TGCCACAATTCAAGGAGGTG+TGG | - | chr4_1:33524289-33524308 | Msa0544640:intron | 50.0% | |
| AGCCACACCTCCTTGAATTG+TGG | + | chr4_1:33524294-33524313 | None:intergenic | 50.0% | |
| ATGAGGGAGAGGAAAGAGAG+GGG | + | chr4_1:33525464-33525483 | None:intergenic | 50.0% | |
| GATGAGGGAGAGGAAAGAGA+GGG | + | chr4_1:33525465-33525484 | None:intergenic | 50.0% | |
| AGATGAGGGAGAGGAAAGAG+AGG | + | chr4_1:33525466-33525485 | None:intergenic | 50.0% | |
| ! | TGAGTTGGAAGATGAGGGAG+AGG | + | chr4_1:33525475-33525494 | None:intergenic | 50.0% |
| ATTATGCTAGGGTTGCTGGG+TGG | + | chr4_1:33525521-33525540 | None:intergenic | 50.0% | |
| GGTGATTATGCTAGGGTTGC+TGG | + | chr4_1:33525525-33525544 | None:intergenic | 50.0% | |
| GATGGCGCCATAACTGAAGA+TGG | + | chr4_1:33525579-33525598 | None:intergenic | 50.0% | |
| ! | GCTGTAGGTGATGGTGATGA+TGG | + | chr4_1:33525597-33525616 | None:intergenic | 50.0% |
| CCACGCCTTCTTTAATCGAC+CGG | - | chr4_1:33525622-33525641 | Msa0544640:intron | 50.0% | |
| GGGGAAGAAAGAAGTGGTGA+TGG | + | chr4_1:33525672-33525691 | None:intergenic | 50.0% | |
| GTAGTGGTCGAATCACGTTG+GGG | - | chr4_1:33525911-33525930 | Msa0544640:CDS | 50.0% | |
| GCTAGAGAAACCACCGGTAC+AGG | - | chr4_1:33521985-33522004 | Msa0544640:intron | 55.0% | |
| CGACTGAGTCTGTGTGTTGC+TGG | - | chr4_1:33522156-33522175 | Msa0544640:intron | 55.0% | |
| CCAACTGAGCCAACGTGTGT+TGG | + | chr4_1:33522832-33522851 | None:intergenic | 55.0% | |
| !! | CCAACACACGTTGGCTCAGT+TGG | - | chr4_1:33522829-33522848 | Msa0544640:intron | 55.0% |
| ! | CACAACCTTCTGAGGGGAAG+TGG | + | chr4_1:33522866-33522885 | None:intergenic | 55.0% |
| CACCAACACCGTCCTCACAT+CGG | + | chr4_1:33522905-33522924 | None:intergenic | 55.0% | |
| !! | GATGTGAGGACGGTGTTGGT+GGG | - | chr4_1:33522904-33522923 | Msa0544640:intron | 55.0% |
| GTCAGTTGAGCGGAGTGGAA+TGG | - | chr4_1:33523461-33523480 | Msa0544640:intron | 55.0% | |
| GCCTAGTCTCTCGTACACCA+TGG | - | chr4_1:33525346-33525365 | Msa0544640:intron | 55.0% | |
| GCCATGGTGTACGAGAGACT+AGG | + | chr4_1:33525350-33525369 | None:intergenic | 55.0% | |
| AGAGGGGAAGGAGGAAGATG+AGG | + | chr4_1:33525448-33525467 | None:intergenic | 55.0% | |
| AGAGGAAAGAGAGGGGAAGG+AGG | + | chr4_1:33525457-33525476 | None:intergenic | 55.0% | |
| ! | TGCTGGGTGGTTGCTGTTGA+AGG | + | chr4_1:33525508-33525527 | None:intergenic | 55.0% |
| GTGGAAGACGCTGTAGGTGA+TGG | + | chr4_1:33525606-33525625 | None:intergenic | 55.0% | |
| CCGGTCGATTAAAGAAGGCG+TGG | + | chr4_1:33525625-33525644 | None:intergenic | 55.0% | |
| GAGGAGGGGGAAGAAAGAAG+TGG | + | chr4_1:33525678-33525697 | None:intergenic | 55.0% | |
| ! | AAGTGATGATGCTGGTGGCG+AGG | + | chr4_1:33525697-33525716 | None:intergenic | 55.0% |
| GGTCGAATCACGTTGGGGTT+TGG | - | chr4_1:33525916-33525935 | Msa0544640:CDS | 55.0% | |
| ACGGACCACTTCCCCTCAGA+AGG | - | chr4_1:33522858-33522877 | Msa0544640:intron | 60.0% | |
| CGATTCCCACTGCCGATGTG+AGG | - | chr4_1:33522890-33522909 | Msa0544640:intron | 60.0% | |
| TCCCACTGCCGATGTGAGGA+CGG | - | chr4_1:33522894-33522913 | Msa0544640:intron | 60.0% | |
| ACCGTCCTCACATCGGCAGT+GGG | + | chr4_1:33522898-33522917 | None:intergenic | 60.0% | |
| TGCCGATGTGAGGACGGTGT+TGG | - | chr4_1:33522900-33522919 | Msa0544640:intron | 60.0% | |
| ! | CGATGTGAGGACGGTGTTGG+TGG | - | chr4_1:33522903-33522922 | Msa0544640:intron | 60.0% |
| !! | GGCCCAAAGGGCACTTACAG+AGG | + | chr4_1:33522939-33522958 | None:intergenic | 60.0% |
| CTGTAAGTGCCCTTTGGGCC+CGG | - | chr4_1:33522939-33522958 | Msa0544640:intron | 60.0% | |
| GGGAGAGGAAAGAGAGGGGA+AGG | + | chr4_1:33525460-33525479 | None:intergenic | 60.0% | |
| ! | GAAGGCGTGGAAGACGCTGT+AGG | + | chr4_1:33525612-33525631 | None:intergenic | 60.0% |
| ! | ATGATGCTGGTGGCGAGGAG+GGG | + | chr4_1:33525692-33525711 | None:intergenic | 60.0% |
| ! | GATGATGCTGGTGGCGAGGA+GGG | + | chr4_1:33525693-33525712 | None:intergenic | 60.0% |
| ! | TGATGATGCTGGTGGCGAGG+AGG | + | chr4_1:33525694-33525713 | None:intergenic | 60.0% |
| CACCGTCCTCACATCGGCAG+TGG | + | chr4_1:33522899-33522918 | None:intergenic | 65.0% | |
| TAAGTGCCCTTTGGGCCCGG+AGG | - | chr4_1:33522942-33522961 | Msa0544640:intron | 65.0% | |
| TCCGGTCACCACCAGGGTCA+GGG | + | chr4_1:33522972-33522991 | None:intergenic | 65.0% | |
| TTCGGCTCCGGTCACCACCA+GGG | + | chr4_1:33522978-33522997 | None:intergenic | 65.0% | |
| ATTCGGCTCCGGTCACCACC+AGG | + | chr4_1:33522979-33522998 | None:intergenic | 65.0% | |
| TCCGGTCACCACCAGGGTCA+GGG | + | chr4_1:33522972-33522991 | None:intergenic | 65.0% | |
| TTCGGCTCCGGTCACCACCA+GGG | + | chr4_1:33522978-33522997 | None:intergenic | 65.0% | |
| ATTCGGCTCCGGTCACCACC+AGG | + | chr4_1:33522979-33522998 | None:intergenic | 65.0% | |
| ! | TGATGCTGGTGGCGAGGAGG+GGG | + | chr4_1:33525691-33525710 | None:intergenic | 65.0% |
| GTCACCACCAGGGTCAGGGC+AGG | + | chr4_1:33522968-33522987 | None:intergenic | 70.0% | |
| ! | GCCCTGACCCTGGTGGTGAC+CGG | - | chr4_1:33522968-33522987 | Msa0544640:intron | 70.0% |
| CTCCGGTCACCACCAGGGTC+AGG | + | chr4_1:33522973-33522992 | None:intergenic | 70.0% | |
| GTCACCACCAGGGTCAGGGC+AGG | + | chr4_1:33522968-33522987 | None:intergenic | 70.0% | |
| ! | GCCCTGACCCTGGTGGTGAC+CGG | - | chr4_1:33522968-33522987 | Msa0544640:intron | 70.0% |
| CTCCGGTCACCACCAGGGTC+AGG | + | chr4_1:33522973-33522992 | None:intergenic | 70.0% | |
| GGCAGGCCTCCGGGCCCAAA+GGG | + | chr4_1:33522951-33522970 | None:intergenic | 75.0% | |
| CAGGGTCAGGGCAGGCCTCC+GGG | + | chr4_1:33522960-33522979 | None:intergenic | 75.0% | |
| CCAGGGTCAGGGCAGGCCTC+CGG | + | chr4_1:33522961-33522980 | None:intergenic | 75.0% | |
| GAGGCCTGCCCTGACCCTGG+TGG | - | chr4_1:33522961-33522980 | Msa0544640:intron | 75.0% | |
| CAGGGTCAGGGCAGGCCTCC+GGG | + | chr4_1:33522960-33522979 | None:intergenic | 75.0% | |
| CCAGGGTCAGGGCAGGCCTC+CGG | + | chr4_1:33522961-33522980 | None:intergenic | 75.0% | |
| GAGGCCTGCCCTGACCCTGG+TGG | - | chr4_1:33522961-33522980 | Msa0544640:intron | 75.0% | |
| ! | GGGCAGGCCTCCGGGCCCAA+AGG | + | chr4_1:33522952-33522971 | None:intergenic | 80.0% |
| ! | CCGGAGGCCTGCCCTGACCC+TGG | - | chr4_1:33522958-33522977 | Msa0544640:intron | 80.0% |
| ! | CCGGAGGCCTGCCCTGACCC+TGG | - | chr4_1:33522958-33522977 | Msa0544640:intron | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 33520878 | 33526219 | 33520878 | ID=Msa0544640;Name=Msa0544640 |
| chr4_1 | mRNA | 33520878 | 33526219 | 33520878 | ID=Msa0544640-mRNA-1;Parent=Msa0544640;Name=Msa0544640-mRNA-1;_AED=0.19;_eAED=0.19;_QI=0|0|0|1|0|0|3|0|355 |
| chr4_1 | exon | 33526034 | 33526219 | 33526034 | ID=Msa0544640-mRNA-1:exon:8570;Parent=Msa0544640-mRNA-1 |
| chr4_1 | exon | 33525842 | 33526018 | 33525842 | ID=Msa0544640-mRNA-1:exon:8569;Parent=Msa0544640-mRNA-1 |
| chr4_1 | exon | 33520878 | 33521582 | 33520878 | ID=Msa0544640-mRNA-1:exon:8568;Parent=Msa0544640-mRNA-1 |
| chr4_1 | CDS | 33526034 | 33526219 | 33526034 | ID=Msa0544640-mRNA-1:cds;Parent=Msa0544640-mRNA-1 |
| chr4_1 | CDS | 33525842 | 33526018 | 33525842 | ID=Msa0544640-mRNA-1:cds;Parent=Msa0544640-mRNA-1 |
| chr4_1 | CDS | 33520878 | 33521582 | 33520878 | ID=Msa0544640-mRNA-1:cds;Parent=Msa0544640-mRNA-1 |
| Gene Sequence |
| Protein sequence |
