Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0609850 | XP_013456776.1 | 66.552 | 290 | 82 | 7 | 10 | 294 | 1 | 280 | 3.13e-103 | 313 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0090380 | Msa0609850 | 0.814664 | 1.373032e-51 | -8.615850e-47 |
| Msa0609850 | Msa0650560 | 0.873994 | 9.547487e-68 | -8.615850e-47 |
| Msa0609850 | Msa0945130 | 0.807221 | 5.618313e-50 | -8.615850e-47 |
| Msa0609850 | Msa1038880 | 0.800241 | 1.580682e-48 | -8.615850e-47 |
| Msa0609850 | Msa1069890 | 0.819878 | 9.215498e-53 | -8.615850e-47 |
| Msa0609850 | Msa1119920 | 0.807891 | 4.049411e-50 | -8.615850e-47 |
| Msa0609850 | Msa1131790 | 0.816172 | 6.341252e-52 | -8.615850e-47 |
| Msa0609850 | Msa1225580 | 0.803583 | 3.253295e-49 | -8.615850e-47 |
| Msa0609850 | Msa1246790 | 0.805610 | 1.228466e-49 | -8.615850e-47 |
| Msa0609850 | Msa1256060 | 0.830391 | 3.015782e-55 | -8.615850e-47 |
| Msa0609850 | Msa1420940 | 0.807940 | 3.953155e-50 | -8.615850e-47 |
| Msa0609850 | Msa1433410 | 0.815607 | 8.476973e-52 | -8.615850e-47 |
| Msa0609850 | Msa1443640 | 0.801702 | 7.949655e-49 | -8.615850e-47 |
| Msa0609850 | Msa1447880 | 0.814767 | 1.302884e-51 | -8.615850e-47 |
| Msa0137860 | Msa0609850 | 0.816680 | 4.880923e-52 | -8.615850e-47 |
| Msa0296910 | Msa0609850 | 0.811869 | 5.640908e-51 | -8.615850e-47 |
| Msa0302730 | Msa0609850 | 0.802580 | 5.243585e-49 | -8.615850e-47 |
| Msa0335070 | Msa0609850 | 0.813682 | 2.262130e-51 | -8.615850e-47 |
| Msa0544640 | Msa0609850 | 0.806732 | 7.132046e-50 | -8.615850e-47 |
| Msa0588710 | Msa0609850 | 0.806796 | 6.910968e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0609850 | MtrunA17_Chr4g0042791 | 66.552 | 290 | 82 | 7 | 10 | 294 | 1 | 280 | 2.88e-107 | 313 |
| Msa0609850 | MtrunA17_Chr4g0042781 | 62.718 | 287 | 102 | 4 | 10 | 294 | 1 | 284 | 5.67e-98 | 289 |
| Msa0609850 | MtrunA17_Chr4g0042801 | 53.214 | 280 | 104 | 4 | 10 | 287 | 1 | 255 | 1.92e-83 | 251 |
| Msa0609850 | MtrunA17_Chr4g0042811 | 32.308 | 325 | 136 | 12 | 13 | 278 | 11 | 310 | 1.50e-22 | 95.9 |
| Msa0609850 | MtrunA17_Chr4g0052301 | 28.571 | 294 | 169 | 13 | 13 | 278 | 12 | 292 | 3.60e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0609850 | AT3G11810.1 | 33.439 | 314 | 166 | 7 | 13 | 284 | 14 | 326 | 1.35e-37 | 136 |
Find 76 sgRNAs with CRISPR-Local
Find 188 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGGAAGTTTACATGATTT+TGG | 0.150576 | 4_2:+57417403 | Msa0609850:CDS |
| AGTACCTCTTGTGGTTTATT+TGG | 0.178560 | 4_2:+57417385 | Msa0609850:CDS |
| TCTAGTCTATTATGGAATTA+AGG | 0.232332 | 4_2:-57417726 | None:intergenic |
| GAAGTTGAAGAAGTGGAATT+TGG | 0.233912 | 4_2:+57417677 | Msa0609850:CDS |
| AAATATAACAAAACAAAGTT+AGG | 0.287977 | 4_2:-57417341 | None:intergenic |
| TGGTGGGTGGGTTGTGTTGA+AGG | 0.317375 | 4_2:-57417022 | None:intergenic |
| GTGGGGTTGGTAATGGTGGG+TGG | 0.324989 | 4_2:-57417035 | None:intergenic |
| CGGCGGAGGTGGCGAGGAGG+GGG | 0.336505 | 4_2:-57417211 | None:intergenic |
| TTTCTCTTTATGTTTCTCAT+TGG | 0.336811 | 4_2:+57417263 | Msa0609850:CDS |
| TGTGGTGGGGTTGGTAATGG+TGG | 0.370934 | 4_2:-57417039 | None:intergenic |
| CATCGATTAGTGGTTATAGT+TGG | 0.378825 | 4_2:+57417555 | Msa0609850:CDS |
| AAGTTGAAGAAGTGGAATTT+GGG | 0.381890 | 4_2:+57417678 | Msa0609850:CDS |
| GGTGGAATCACGTTGGGGTT+TGG | 0.387654 | 4_2:+57417442 | Msa0609850:CDS |
| AGAGGAAAGAGAGGGGAAGG+AGG | 0.392894 | 4_2:-57416971 | None:intergenic |
| GATTGTGGTGGGGTTGGTAA+TGG | 0.418184 | 4_2:-57417042 | None:intergenic |
| TGTAGTGGTGGAATCACGTT+GGG | 0.429158 | 4_2:+57417436 | Msa0609850:CDS |
| ATCGATTAGTGGTTATAGTT+GGG | 0.432064 | 4_2:+57417556 | Msa0609850:CDS |
| AGTTTCCAGCTTCTCCTTAA+CGG | 0.432817 | 4_2:-57417467 | None:intergenic |
| TGACGGCGGAGGTGGCGAGG+AGG | 0.433770 | 4_2:-57417214 | None:intergenic |
| ACGGCGGAGGTGGCGAGGAG+GGG | 0.433896 | 4_2:-57417212 | None:intergenic |
| GAGGGGAAGGAGGAAGATGA+GGG | 0.434317 | 4_2:-57416961 | None:intergenic |
| GTTAAGGAGAAGCTGGAAAC+TGG | 0.435537 | 4_2:+57417469 | Msa0609850:CDS |
| AGAGGGGAAGGAGGAAGATG+AGG | 0.440647 | 4_2:-57416962 | None:intergenic |
| GGTTAGTCATGAAGTCGATA+TGG | 0.441486 | 4_2:-57417319 | None:intergenic |
| TGAGTTGGTAGATGAGGGAG+AGG | 0.444374 | 4_2:-57416989 | None:intergenic |
| GTTGGGGTTTGGAACCGTTA+AGG | 0.446300 | 4_2:+57417453 | Msa0609850:CDS |
| TTTGACAGGTTGATTAAAGA+AGG | 0.447665 | 4_2:-57417150 | None:intergenic |
| AGTGAAAGTGACGGCGGAGG+TGG | 0.448228 | 4_2:-57417222 | None:intergenic |
| ATGGCTTCTTTGAGTTTGAC+AGG | 0.455773 | 4_2:-57417164 | None:intergenic |
| TGGGGTTGGTAATGGTGGGT+GGG | 0.463533 | 4_2:-57417034 | None:intergenic |
| GGAAGTGGTGATGGATTTGA+TGG | 0.464194 | 4_2:-57417183 | None:intergenic |
| AGATGAGGGAGAGGAAAGAG+AGG | 0.467128 | 4_2:-57416980 | None:intergenic |
| GGGGAAGAAGGAAGTGGTGA+TGG | 0.469954 | 4_2:-57417192 | None:intergenic |
| GGGAGAGGAAAGAGAGGGGA+AGG | 0.471420 | 4_2:-57416974 | None:intergenic |
| ACATGATGAAGTTGAAGAAG+TGG | 0.477972 | 4_2:+57417670 | Msa0609850:CDS |
| AGATGGAAGAGGTAAGGAAG+AGG | 0.486051 | 4_2:-57417082 | None:intergenic |
| AAGAGAAGATGGAAGAGGTA+AGG | 0.488350 | 4_2:-57417088 | None:intergenic |
| GACGGCGGAGGTGGCGAGGA+GGG | 0.489494 | 4_2:-57417213 | None:intergenic |
| GGGATGTTGACATCGATTAG+TGG | 0.493411 | 4_2:+57417545 | Msa0609850:CDS |
| GATGGCACTATAAGAGAAGA+TGG | 0.501228 | 4_2:-57417099 | None:intergenic |
| TGGAAGAGGTAAGGAAGAGG+AGG | 0.510217 | 4_2:-57417079 | None:intergenic |
| AGTGAAAGCACCGCAAGTAT+AGG | 0.515408 | 4_2:-57417599 | None:intergenic |
| CGTGGTTTCTCCTATACTTG+CGG | 0.518316 | 4_2:+57417589 | Msa0609850:CDS |
| GATTCTTATAGTACCTCTTG+TGG | 0.521974 | 4_2:+57417376 | Msa0609850:CDS |
| TGGAACCGTTAAGGAGAAGC+TGG | 0.532066 | 4_2:+57417462 | Msa0609850:CDS |
| GGAAGATGAGGGAAAGAGTG+AGG | 0.538897 | 4_2:-57416950 | None:intergenic |
| GTGGTGGGGTTGGTAATGGT+GGG | 0.540006 | 4_2:-57417038 | None:intergenic |
| AGTGGAATTTGGGAAGGAAA+AGG | 0.544513 | 4_2:+57417688 | Msa0609850:CDS |
| AATATAACAAAACAAAGTTA+GGG | 0.546540 | 4_2:-57417340 | None:intergenic |
| AAAGATGATTGTGGTGGGGT+TGG | 0.549565 | 4_2:-57417048 | None:intergenic |
| GAGCATGAGTTGGTAGATGA+GGG | 0.556437 | 4_2:-57416994 | None:intergenic |
| GAGAGTGAAAGTGACGGCGG+AGG | 0.556656 | 4_2:-57417225 | None:intergenic |
| GATGAGGGAGAGGAAAGAGA+GGG | 0.561976 | 4_2:-57416979 | None:intergenic |
| TGAGCATGAGTTGGTAGATG+AGG | 0.563215 | 4_2:-57416995 | None:intergenic |
| GCTTTCACTTTACAGTATTG+CGG | 0.575903 | 4_2:+57417613 | Msa0609850:CDS |
| TGAAGAAGTGGAATTTGGGA+AGG | 0.577294 | 4_2:+57417682 | Msa0609850:CDS |
| ATGAGGGAGAGGAAAGAGAG+GGG | 0.577407 | 4_2:-57416978 | None:intergenic |
| AAGTGACGGCGGAGGTGGCG+AGG | 0.578409 | 4_2:-57417217 | None:intergenic |
| ACTTCCAAATAAACCACAAG+AGG | 0.584311 | 4_2:-57417389 | None:intergenic |
| GGTGAAAGTGATTGTAGTGG+TGG | 0.584735 | 4_2:+57417424 | Msa0609850:CDS |
| ACTATAAGAGAAGATGGAAG+AGG | 0.587360 | 4_2:-57417093 | None:intergenic |
| AACTGGTGAAAGGAATGAAA+AGG | 0.591857 | 4_2:+57417486 | Msa0609850:CDS |
| GCTGTAGGTGATGGTGATGA+TGG | 0.593392 | 4_2:-57417117 | None:intergenic |
| GGTGAAAGGAATGAAAAGGT+TGG | 0.594891 | 4_2:+57417490 | Msa0609850:CDS |
| GAAGGCGTTGTAAACGCTGT+AGG | 0.602360 | 4_2:-57417132 | None:intergenic |
| GAAGGTCTTTGAGCATGAGT+TGG | 0.610047 | 4_2:-57417004 | None:intergenic |
| TTTGGTGAAAGTGATTGTAG+TGG | 0.612338 | 4_2:+57417421 | Msa0609850:CDS |
| AGAAGCTGGAAACTGGTGAA+AGG | 0.623879 | 4_2:+57417476 | Msa0609850:CDS |
| GAAAGAGTGAGGTAGTGACC+AGG | 0.630176 | 4_2:-57416939 | None:intergenic |
| GAAGTAGAGAGTGAAAGTGA+CGG | 0.630975 | 4_2:-57417231 | None:intergenic |
| GTCATAATAAATTCTCAACC+TGG | 0.635020 | 4_2:+57416921 | Msa0609850:CDS |
| GTTGTAAACGCTGTAGGTGA+TGG | 0.651201 | 4_2:-57417126 | None:intergenic |
| TTGTAGTGGTGGAATCACGT+TGG | 0.659689 | 4_2:+57417435 | Msa0609850:CDS |
| GTAGAGAGTGAAAGTGACGG+CGG | 0.661736 | 4_2:-57417228 | None:intergenic |
| ATTTGGGAAGGAAAAGGACG+AGG | 0.663443 | 4_2:+57417694 | Msa0609850:CDS |
| GTAGTGGTGGAATCACGTTG+GGG | 0.688303 | 4_2:+57417437 | Msa0609850:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTTTTCATCATTTTTATATT+AGG | + | chr4_2:57417296-57417315 | Msa0609850:CDS | 15.0% |
| !! | AATATAACAAAACAAAGTTA+GGG | - | chr4_2:57417343-57417362 | None:intergenic | 15.0% |
| !! | AAATATAACAAAACAAAGTT+AGG | - | chr4_2:57417344-57417363 | None:intergenic | 15.0% |
| !!! | CTTTTCATCATTTTTATATT+AGG | + | chr4_2:57417296-57417315 | Msa0609850:CDS | 15.0% |
| !! | AATATAACAAAACAAAGTTA+GGG | - | chr4_2:57417343-57417362 | None:intergenic | 15.0% |
| !! | AAATATAACAAAACAAAGTT+AGG | - | chr4_2:57417344-57417363 | None:intergenic | 15.0% |
| !!! | CTTTGTTTTGTTATATTTCA+TGG | + | chr4_2:57417346-57417365 | Msa0609850:CDS | 20.0% |
| !!! | CTTTGTTTTGTTATATTTCA+TGG | + | chr4_2:57417346-57417365 | Msa0609850:CDS | 20.0% |
| ! | GATAAACAAAAAGATGATTG+TGG | - | chr4_2:57417060-57417079 | None:intergenic | 25.0% |
| ! | TTTCTCTTTATGTTTCTCAT+TGG | + | chr4_2:57417263-57417282 | Msa0609850:CDS | 25.0% |
| !! | TTTGGAAGTTTACATGATTT+TGG | + | chr4_2:57417403-57417422 | Msa0609850:CDS | 25.0% |
| ! | GATAAACAAAAAGATGATTG+TGG | - | chr4_2:57417060-57417079 | None:intergenic | 25.0% |
| ! | TTTCTCTTTATGTTTCTCAT+TGG | + | chr4_2:57417263-57417282 | Msa0609850:CDS | 25.0% |
| !! | TTTGGAAGTTTACATGATTT+TGG | + | chr4_2:57417403-57417422 | Msa0609850:CDS | 25.0% |
| GTCATAATAAATTCTCAACC+TGG | + | chr4_2:57416921-57416940 | Msa0609850:CDS | 30.0% | |
| AACAAAAAGATGATTGTGGT+GGG | - | chr4_2:57417056-57417075 | None:intergenic | 30.0% | |
| AAACAAAAAGATGATTGTGG+TGG | - | chr4_2:57417057-57417076 | None:intergenic | 30.0% | |
| !! | TTTGACAGGTTGATTAAAGA+AGG | - | chr4_2:57417153-57417172 | None:intergenic | 30.0% |
| ATCGATTAGTGGTTATAGTT+GGG | + | chr4_2:57417556-57417575 | Msa0609850:CDS | 30.0% | |
| AAGTTGAAGAAGTGGAATTT+GGG | + | chr4_2:57417678-57417697 | Msa0609850:CDS | 30.0% | |
| GTCATAATAAATTCTCAACC+TGG | + | chr4_2:57416921-57416940 | Msa0609850:CDS | 30.0% | |
| AACAAAAAGATGATTGTGGT+GGG | - | chr4_2:57417056-57417075 | None:intergenic | 30.0% | |
| AAACAAAAAGATGATTGTGG+TGG | - | chr4_2:57417057-57417076 | None:intergenic | 30.0% | |
| !! | TTTGACAGGTTGATTAAAGA+AGG | - | chr4_2:57417153-57417172 | None:intergenic | 30.0% |
| ATCGATTAGTGGTTATAGTT+GGG | + | chr4_2:57417556-57417575 | Msa0609850:CDS | 30.0% | |
| AAGTTGAAGAAGTGGAATTT+GGG | + | chr4_2:57417678-57417697 | Msa0609850:CDS | 30.0% | |
| ! | TAGAGAAGATCCCAGATTTT+TGG | - | chr4_2:57416891-57416910 | None:intergenic | 35.0% |
| ACAAAAAGATGATTGTGGTG+GGG | - | chr4_2:57417055-57417074 | None:intergenic | 35.0% | |
| ACTATAAGAGAAGATGGAAG+AGG | - | chr4_2:57417096-57417115 | None:intergenic | 35.0% | |
| GATTCTTATAGTACCTCTTG+TGG | + | chr4_2:57417376-57417395 | Msa0609850:CDS | 35.0% | |
| AGTACCTCTTGTGGTTTATT+TGG | + | chr4_2:57417385-57417404 | Msa0609850:CDS | 35.0% | |
| ACTTCCAAATAAACCACAAG+AGG | - | chr4_2:57417392-57417411 | None:intergenic | 35.0% | |
| TTTGGTGAAAGTGATTGTAG+TGG | + | chr4_2:57417421-57417440 | Msa0609850:CDS | 35.0% | |
| AACTGGTGAAAGGAATGAAA+AGG | + | chr4_2:57417486-57417505 | Msa0609850:CDS | 35.0% | |
| !!! | GGCTTTTTCAACCTTGTTTT+TGG | + | chr4_2:57417511-57417530 | Msa0609850:CDS | 35.0% |
| ! | CATCGATTAGTGGTTATAGT+TGG | + | chr4_2:57417555-57417574 | Msa0609850:CDS | 35.0% |
| ! | TAGTTGGGTTATGATTTTCG+TGG | + | chr4_2:57417571-57417590 | Msa0609850:CDS | 35.0% |
| GCTTTCACTTTACAGTATTG+CGG | + | chr4_2:57417613-57417632 | Msa0609850:CDS | 35.0% | |
| ACATGATGAAGTTGAAGAAG+TGG | + | chr4_2:57417670-57417689 | Msa0609850:CDS | 35.0% | |
| GAAGTTGAAGAAGTGGAATT+TGG | + | chr4_2:57417677-57417696 | Msa0609850:CDS | 35.0% | |
| ! | TAGAGAAGATCCCAGATTTT+TGG | - | chr4_2:57416891-57416910 | None:intergenic | 35.0% |
| ACAAAAAGATGATTGTGGTG+GGG | - | chr4_2:57417055-57417074 | None:intergenic | 35.0% | |
| ACTATAAGAGAAGATGGAAG+AGG | - | chr4_2:57417096-57417115 | None:intergenic | 35.0% | |
| GATTCTTATAGTACCTCTTG+TGG | + | chr4_2:57417376-57417395 | Msa0609850:CDS | 35.0% | |
| AGTACCTCTTGTGGTTTATT+TGG | + | chr4_2:57417385-57417404 | Msa0609850:CDS | 35.0% | |
| ACTTCCAAATAAACCACAAG+AGG | - | chr4_2:57417392-57417411 | None:intergenic | 35.0% | |
| TTTGGTGAAAGTGATTGTAG+TGG | + | chr4_2:57417421-57417440 | Msa0609850:CDS | 35.0% | |
| AACTGGTGAAAGGAATGAAA+AGG | + | chr4_2:57417486-57417505 | Msa0609850:CDS | 35.0% | |
| !!! | GGCTTTTTCAACCTTGTTTT+TGG | + | chr4_2:57417511-57417530 | Msa0609850:CDS | 35.0% |
| ! | CATCGATTAGTGGTTATAGT+TGG | + | chr4_2:57417555-57417574 | Msa0609850:CDS | 35.0% |
| ! | TAGTTGGGTTATGATTTTCG+TGG | + | chr4_2:57417571-57417590 | Msa0609850:CDS | 35.0% |
| GCTTTCACTTTACAGTATTG+CGG | + | chr4_2:57417613-57417632 | Msa0609850:CDS | 35.0% | |
| ACATGATGAAGTTGAAGAAG+TGG | + | chr4_2:57417670-57417689 | Msa0609850:CDS | 35.0% | |
| GAAGTTGAAGAAGTGGAATT+TGG | + | chr4_2:57417677-57417696 | Msa0609850:CDS | 35.0% | |
| AAAAATCTCCTCTCACACCA+TGG | + | chr4_2:57416863-57416882 | Msa0609850:CDS | 40.0% | |
| AAGAGAAGATGGAAGAGGTA+AGG | - | chr4_2:57417091-57417110 | None:intergenic | 40.0% | |
| GATGGCACTATAAGAGAAGA+TGG | - | chr4_2:57417102-57417121 | None:intergenic | 40.0% | |
| ! | ATGGCTTCTTTGAGTTTGAC+AGG | - | chr4_2:57417167-57417186 | None:intergenic | 40.0% |
| GAAGTAGAGAGTGAAAGTGA+CGG | - | chr4_2:57417234-57417253 | None:intergenic | 40.0% | |
| ! | GGTTAGTCATGAAGTCGATA+TGG | - | chr4_2:57417322-57417341 | None:intergenic | 40.0% |
| AGTTTCCAGCTTCTCCTTAA+CGG | - | chr4_2:57417470-57417489 | None:intergenic | 40.0% | |
| GGTGAAAGGAATGAAAAGGT+TGG | + | chr4_2:57417490-57417509 | Msa0609850:CDS | 40.0% | |
| TTGCAACGCAACCAAAAACA+AGG | - | chr4_2:57417525-57417544 | None:intergenic | 40.0% | |
| !!! | TTGTTTTTGGTTGCGTTGCA+AGG | + | chr4_2:57417524-57417543 | Msa0609850:CDS | 40.0% |
| !!! | TGTTTTTGGTTGCGTTGCAA+GGG | + | chr4_2:57417525-57417544 | Msa0609850:CDS | 40.0% |
| TGAAGAAGTGGAATTTGGGA+AGG | + | chr4_2:57417682-57417701 | Msa0609850:CDS | 40.0% | |
| AGTGGAATTTGGGAAGGAAA+AGG | + | chr4_2:57417688-57417707 | Msa0609850:CDS | 40.0% | |
| AAAAATCTCCTCTCACACCA+TGG | + | chr4_2:57416863-57416882 | Msa0609850:CDS | 40.0% | |
| AAGAGAAGATGGAAGAGGTA+AGG | - | chr4_2:57417091-57417110 | None:intergenic | 40.0% | |
| GATGGCACTATAAGAGAAGA+TGG | - | chr4_2:57417102-57417121 | None:intergenic | 40.0% | |
| ! | ATGGCTTCTTTGAGTTTGAC+AGG | - | chr4_2:57417167-57417186 | None:intergenic | 40.0% |
| GAAGTAGAGAGTGAAAGTGA+CGG | - | chr4_2:57417234-57417253 | None:intergenic | 40.0% | |
| ! | GGTTAGTCATGAAGTCGATA+TGG | - | chr4_2:57417322-57417341 | None:intergenic | 40.0% |
| AGTTTCCAGCTTCTCCTTAA+CGG | - | chr4_2:57417470-57417489 | None:intergenic | 40.0% | |
| GGTGAAAGGAATGAAAAGGT+TGG | + | chr4_2:57417490-57417509 | Msa0609850:CDS | 40.0% | |
| TTGCAACGCAACCAAAAACA+AGG | - | chr4_2:57417525-57417544 | None:intergenic | 40.0% | |
| !!! | TTGTTTTTGGTTGCGTTGCA+AGG | + | chr4_2:57417524-57417543 | Msa0609850:CDS | 40.0% |
| !!! | TGTTTTTGGTTGCGTTGCAA+GGG | + | chr4_2:57417525-57417544 | Msa0609850:CDS | 40.0% |
| TGAAGAAGTGGAATTTGGGA+AGG | + | chr4_2:57417682-57417701 | Msa0609850:CDS | 40.0% | |
| AGTGGAATTTGGGAAGGAAA+AGG | + | chr4_2:57417688-57417707 | Msa0609850:CDS | 40.0% | |
| ACACCATGGCTCCAAAAATC+TGG | + | chr4_2:57416877-57416896 | Msa0609850:CDS | 45.0% | |
| CACCATGGCTCCAAAAATCT+GGG | + | chr4_2:57416878-57416897 | Msa0609850:CDS | 45.0% | |
| !!! | ATCCCAGATTTTTGGAGCCA+TGG | - | chr4_2:57416883-57416902 | None:intergenic | 45.0% |
| !! | GAGCATGAGTTGGTAGATGA+GGG | - | chr4_2:57416997-57417016 | None:intergenic | 45.0% |
| !! | TGAGCATGAGTTGGTAGATG+AGG | - | chr4_2:57416998-57417017 | None:intergenic | 45.0% |
| GAAGGTCTTTGAGCATGAGT+TGG | - | chr4_2:57417007-57417026 | None:intergenic | 45.0% | |
| ! | AAAGATGATTGTGGTGGGGT+TGG | - | chr4_2:57417051-57417070 | None:intergenic | 45.0% |
| AGATGGAAGAGGTAAGGAAG+AGG | - | chr4_2:57417085-57417104 | None:intergenic | 45.0% | |
| GTTGTAAACGCTGTAGGTGA+TGG | - | chr4_2:57417129-57417148 | None:intergenic | 45.0% | |
| !! | GGAAGTGGTGATGGATTTGA+TGG | - | chr4_2:57417186-57417205 | None:intergenic | 45.0% |
| GGTGAAAGTGATTGTAGTGG+TGG | + | chr4_2:57417424-57417443 | Msa0609850:CDS | 45.0% | |
| ! | TTGTAGTGGTGGAATCACGT+TGG | + | chr4_2:57417435-57417454 | Msa0609850:CDS | 45.0% |
| ! | TGTAGTGGTGGAATCACGTT+GGG | + | chr4_2:57417436-57417455 | Msa0609850:CDS | 45.0% |
| GTTAAGGAGAAGCTGGAAAC+TGG | + | chr4_2:57417469-57417488 | Msa0609850:CDS | 45.0% | |
| AGAAGCTGGAAACTGGTGAA+AGG | + | chr4_2:57417476-57417495 | Msa0609850:CDS | 45.0% | |
| ! | GGGATGTTGACATCGATTAG+TGG | + | chr4_2:57417545-57417564 | Msa0609850:CDS | 45.0% |
| CGTGGTTTCTCCTATACTTG+CGG | + | chr4_2:57417589-57417608 | Msa0609850:CDS | 45.0% | |
| !! | AGTGAAAGCACCGCAAGTAT+AGG | - | chr4_2:57417602-57417621 | None:intergenic | 45.0% |
| ATTTGGGAAGGAAAAGGACG+AGG | + | chr4_2:57417694-57417713 | Msa0609850:CDS | 45.0% | |
| ACACCATGGCTCCAAAAATC+TGG | + | chr4_2:57416877-57416896 | Msa0609850:CDS | 45.0% | |
| CACCATGGCTCCAAAAATCT+GGG | + | chr4_2:57416878-57416897 | Msa0609850:CDS | 45.0% | |
| !!! | ATCCCAGATTTTTGGAGCCA+TGG | - | chr4_2:57416883-57416902 | None:intergenic | 45.0% |
| !! | GAGCATGAGTTGGTAGATGA+GGG | - | chr4_2:57416997-57417016 | None:intergenic | 45.0% |
| !! | TGAGCATGAGTTGGTAGATG+AGG | - | chr4_2:57416998-57417017 | None:intergenic | 45.0% |
| GAAGGTCTTTGAGCATGAGT+TGG | - | chr4_2:57417007-57417026 | None:intergenic | 45.0% | |
| ! | AAAGATGATTGTGGTGGGGT+TGG | - | chr4_2:57417051-57417070 | None:intergenic | 45.0% |
| AGATGGAAGAGGTAAGGAAG+AGG | - | chr4_2:57417085-57417104 | None:intergenic | 45.0% | |
| GTTGTAAACGCTGTAGGTGA+TGG | - | chr4_2:57417129-57417148 | None:intergenic | 45.0% | |
| !! | GGAAGTGGTGATGGATTTGA+TGG | - | chr4_2:57417186-57417205 | None:intergenic | 45.0% |
| GGTGAAAGTGATTGTAGTGG+TGG | + | chr4_2:57417424-57417443 | Msa0609850:CDS | 45.0% | |
| ! | TTGTAGTGGTGGAATCACGT+TGG | + | chr4_2:57417435-57417454 | Msa0609850:CDS | 45.0% |
| ! | TGTAGTGGTGGAATCACGTT+GGG | + | chr4_2:57417436-57417455 | Msa0609850:CDS | 45.0% |
| GTTAAGGAGAAGCTGGAAAC+TGG | + | chr4_2:57417469-57417488 | Msa0609850:CDS | 45.0% | |
| AGAAGCTGGAAACTGGTGAA+AGG | + | chr4_2:57417476-57417495 | Msa0609850:CDS | 45.0% | |
| ! | GGGATGTTGACATCGATTAG+TGG | + | chr4_2:57417545-57417564 | Msa0609850:CDS | 45.0% |
| CGTGGTTTCTCCTATACTTG+CGG | + | chr4_2:57417589-57417608 | Msa0609850:CDS | 45.0% | |
| !! | AGTGAAAGCACCGCAAGTAT+AGG | - | chr4_2:57417602-57417621 | None:intergenic | 45.0% |
| ATTTGGGAAGGAAAAGGACG+AGG | + | chr4_2:57417694-57417713 | Msa0609850:CDS | 45.0% | |
| !!! | TTTTGGAGCCATGGTGTGAG+AGG | - | chr4_2:57416874-57416893 | None:intergenic | 50.0% |
| GAAAGAGTGAGGTAGTGACC+AGG | - | chr4_2:57416942-57416961 | None:intergenic | 50.0% | |
| GGAAGATGAGGGAAAGAGTG+AGG | - | chr4_2:57416953-57416972 | None:intergenic | 50.0% | |
| ATGAGGGAGAGGAAAGAGAG+GGG | - | chr4_2:57416981-57417000 | None:intergenic | 50.0% | |
| GATGAGGGAGAGGAAAGAGA+GGG | - | chr4_2:57416982-57417001 | None:intergenic | 50.0% | |
| AGATGAGGGAGAGGAAAGAG+AGG | - | chr4_2:57416983-57417002 | None:intergenic | 50.0% | |
| !! | TGAGTTGGTAGATGAGGGAG+AGG | - | chr4_2:57416992-57417011 | None:intergenic | 50.0% |
| !! | GATTGTGGTGGGGTTGGTAA+TGG | - | chr4_2:57417045-57417064 | None:intergenic | 50.0% |
| TGGAAGAGGTAAGGAAGAGG+AGG | - | chr4_2:57417082-57417101 | None:intergenic | 50.0% | |
| ! | GCTGTAGGTGATGGTGATGA+TGG | - | chr4_2:57417120-57417139 | None:intergenic | 50.0% |
| !! | GAAGGCGTTGTAAACGCTGT+AGG | - | chr4_2:57417135-57417154 | None:intergenic | 50.0% |
| GTAGAGAGTGAAAGTGACGG+CGG | - | chr4_2:57417231-57417250 | None:intergenic | 50.0% | |
| ! | GTAGTGGTGGAATCACGTTG+GGG | + | chr4_2:57417437-57417456 | Msa0609850:CDS | 50.0% |
| ! | GTTGGGGTTTGGAACCGTTA+AGG | + | chr4_2:57417453-57417472 | Msa0609850:CDS | 50.0% |
| TGGAACCGTTAAGGAGAAGC+TGG | + | chr4_2:57417462-57417481 | Msa0609850:CDS | 50.0% | |
| !!! | TTTTGGAGCCATGGTGTGAG+AGG | - | chr4_2:57416874-57416893 | None:intergenic | 50.0% |
| GAAAGAGTGAGGTAGTGACC+AGG | - | chr4_2:57416942-57416961 | None:intergenic | 50.0% | |
| GGAAGATGAGGGAAAGAGTG+AGG | - | chr4_2:57416953-57416972 | None:intergenic | 50.0% | |
| ATGAGGGAGAGGAAAGAGAG+GGG | - | chr4_2:57416981-57417000 | None:intergenic | 50.0% | |
| GATGAGGGAGAGGAAAGAGA+GGG | - | chr4_2:57416982-57417001 | None:intergenic | 50.0% | |
| AGATGAGGGAGAGGAAAGAG+AGG | - | chr4_2:57416983-57417002 | None:intergenic | 50.0% | |
| !! | TGAGTTGGTAGATGAGGGAG+AGG | - | chr4_2:57416992-57417011 | None:intergenic | 50.0% |
| !! | GATTGTGGTGGGGTTGGTAA+TGG | - | chr4_2:57417045-57417064 | None:intergenic | 50.0% |
| TGGAAGAGGTAAGGAAGAGG+AGG | - | chr4_2:57417082-57417101 | None:intergenic | 50.0% | |
| ! | GCTGTAGGTGATGGTGATGA+TGG | - | chr4_2:57417120-57417139 | None:intergenic | 50.0% |
| !! | GAAGGCGTTGTAAACGCTGT+AGG | - | chr4_2:57417135-57417154 | None:intergenic | 50.0% |
| GTAGAGAGTGAAAGTGACGG+CGG | - | chr4_2:57417231-57417250 | None:intergenic | 50.0% | |
| ! | GTAGTGGTGGAATCACGTTG+GGG | + | chr4_2:57417437-57417456 | Msa0609850:CDS | 50.0% |
| ! | GTTGGGGTTTGGAACCGTTA+AGG | + | chr4_2:57417453-57417472 | Msa0609850:CDS | 50.0% |
| TGGAACCGTTAAGGAGAAGC+TGG | + | chr4_2:57417462-57417481 | Msa0609850:CDS | 50.0% | |
| GAGGGGAAGGAGGAAGATGA+GGG | - | chr4_2:57416964-57416983 | None:intergenic | 55.0% | |
| AGAGGGGAAGGAGGAAGATG+AGG | - | chr4_2:57416965-57416984 | None:intergenic | 55.0% | |
| AGAGGAAAGAGAGGGGAAGG+AGG | - | chr4_2:57416974-57416993 | None:intergenic | 55.0% | |
| !! | TGGTGGGTGGGTTGTGTTGA+AGG | - | chr4_2:57417025-57417044 | None:intergenic | 55.0% |
| !! | TGGGGTTGGTAATGGTGGGT+GGG | - | chr4_2:57417037-57417056 | None:intergenic | 55.0% |
| !! | GTGGTGGGGTTGGTAATGGT+GGG | - | chr4_2:57417041-57417060 | None:intergenic | 55.0% |
| !! | TGTGGTGGGGTTGGTAATGG+TGG | - | chr4_2:57417042-57417061 | None:intergenic | 55.0% |
| GGGGAAGAAGGAAGTGGTGA+TGG | - | chr4_2:57417195-57417214 | None:intergenic | 55.0% | |
| GGTGGAATCACGTTGGGGTT+TGG | + | chr4_2:57417442-57417461 | Msa0609850:CDS | 55.0% | |
| GAGGGGAAGGAGGAAGATGA+GGG | - | chr4_2:57416964-57416983 | None:intergenic | 55.0% | |
| AGAGGGGAAGGAGGAAGATG+AGG | - | chr4_2:57416965-57416984 | None:intergenic | 55.0% | |
| AGAGGAAAGAGAGGGGAAGG+AGG | - | chr4_2:57416974-57416993 | None:intergenic | 55.0% | |
| !! | TGGTGGGTGGGTTGTGTTGA+AGG | - | chr4_2:57417025-57417044 | None:intergenic | 55.0% |
| !! | TGGGGTTGGTAATGGTGGGT+GGG | - | chr4_2:57417037-57417056 | None:intergenic | 55.0% |
| !! | GTGGTGGGGTTGGTAATGGT+GGG | - | chr4_2:57417041-57417060 | None:intergenic | 55.0% |
| !! | TGTGGTGGGGTTGGTAATGG+TGG | - | chr4_2:57417042-57417061 | None:intergenic | 55.0% |
| GGGGAAGAAGGAAGTGGTGA+TGG | - | chr4_2:57417195-57417214 | None:intergenic | 55.0% | |
| GGTGGAATCACGTTGGGGTT+TGG | + | chr4_2:57417442-57417461 | Msa0609850:CDS | 55.0% | |
| GGGAGAGGAAAGAGAGGGGA+AGG | - | chr4_2:57416977-57416996 | None:intergenic | 60.0% | |
| !! | GTGGGGTTGGTAATGGTGGG+TGG | - | chr4_2:57417038-57417057 | None:intergenic | 60.0% |
| GAGGAGGGGGAAGAAGGAAG+TGG | - | chr4_2:57417201-57417220 | None:intergenic | 60.0% | |
| AGTGAAAGTGACGGCGGAGG+TGG | - | chr4_2:57417225-57417244 | None:intergenic | 60.0% | |
| GAGAGTGAAAGTGACGGCGG+AGG | - | chr4_2:57417228-57417247 | None:intergenic | 60.0% | |
| GGGAGAGGAAAGAGAGGGGA+AGG | - | chr4_2:57416977-57416996 | None:intergenic | 60.0% | |
| !! | GTGGGGTTGGTAATGGTGGG+TGG | - | chr4_2:57417038-57417057 | None:intergenic | 60.0% |
| GAGGAGGGGGAAGAAGGAAG+TGG | - | chr4_2:57417201-57417220 | None:intergenic | 60.0% | |
| AGTGAAAGTGACGGCGGAGG+TGG | - | chr4_2:57417225-57417244 | None:intergenic | 60.0% | |
| GAGAGTGAAAGTGACGGCGG+AGG | - | chr4_2:57417228-57417247 | None:intergenic | 60.0% | |
| GGTGGCGAGGAGGGGGAAGA+AGG | - | chr4_2:57417207-57417226 | None:intergenic | 70.0% | |
| AAGTGACGGCGGAGGTGGCG+AGG | - | chr4_2:57417220-57417239 | None:intergenic | 70.0% | |
| GGTGGCGAGGAGGGGGAAGA+AGG | - | chr4_2:57417207-57417226 | None:intergenic | 70.0% | |
| AAGTGACGGCGGAGGTGGCG+AGG | - | chr4_2:57417220-57417239 | None:intergenic | 70.0% | |
| ACGGCGGAGGTGGCGAGGAG+GGG | - | chr4_2:57417215-57417234 | None:intergenic | 75.0% | |
| GACGGCGGAGGTGGCGAGGA+GGG | - | chr4_2:57417216-57417235 | None:intergenic | 75.0% | |
| TGACGGCGGAGGTGGCGAGG+AGG | - | chr4_2:57417217-57417236 | None:intergenic | 75.0% | |
| ACGGCGGAGGTGGCGAGGAG+GGG | - | chr4_2:57417215-57417234 | None:intergenic | 75.0% | |
| GACGGCGGAGGTGGCGAGGA+GGG | - | chr4_2:57417216-57417235 | None:intergenic | 75.0% | |
| TGACGGCGGAGGTGGCGAGG+AGG | - | chr4_2:57417217-57417236 | None:intergenic | 75.0% | |
| ! | CGGCGGAGGTGGCGAGGAGG+GGG | - | chr4_2:57417214-57417233 | None:intergenic | 80.0% |
| ! | CGGCGGAGGTGGCGAGGAGG+GGG | - | chr4_2:57417214-57417233 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 57416855 | 57417739 | 57416855 | ID=Msa0609850;Name=Msa0609850 |
| chr4_2 | mRNA | 57416855 | 57417739 | 57416855 | ID=Msa0609850-mRNA-1;Parent=Msa0609850;Name=Msa0609850-mRNA-1;_AED=0.27;_eAED=0.27;_QI=0|-1|0|1|-1|1|1|0|294 |
| chr4_2 | exon | 57416855 | 57417739 | 57416855 | ID=Msa0609850-mRNA-1:exon:14903;Parent=Msa0609850-mRNA-1 |
| chr4_2 | CDS | 57416855 | 57417739 | 57416855 | ID=Msa0609850-mRNA-1:cds;Parent=Msa0609850-mRNA-1 |
| Gene Sequence |
| Protein sequence |
