Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0209360 | KEH37969.1 | 99.609 | 511 | 2 | 0 | 11 | 521 | 1 | 511 | 0.0 | 1057 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0209360 | sp|O48780|KCS11_ARATH | 82.711 | 509 | 87 | 1 | 13 | 521 | 2 | 509 | 0.0 | 900 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0209360 | A0A072V7F7 | 99.609 | 511 | 2 | 0 | 11 | 521 | 1 | 511 | 0.0 | 1057 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0163960 | Msa0209360 | -0.815153 | 1.069519e-51 | -8.615850e-47 |
| Msa0207680 | Msa0209360 | 0.925581 | 1.510862e-90 | -8.615850e-47 |
| Msa0207690 | Msa0209360 | 0.906259 | 1.796797e-80 | -8.615850e-47 |
| Msa0209360 | Msa0242820 | 0.844632 | 6.703154e-59 | -8.615850e-47 |
| Msa0209360 | Msa0287640 | 0.864317 | 1.326040e-64 | -8.615850e-47 |
| Msa0209360 | Msa0287660 | 0.850943 | 1.224134e-60 | -8.615850e-47 |
| Msa0209360 | Msa0295680 | 0.830068 | 3.615107e-55 | -8.615850e-47 |
| Msa0209360 | Msa0373050 | 0.825661 | 4.151515e-54 | -8.615850e-47 |
| Msa0209360 | Msa0373060 | 0.845044 | 5.191717e-59 | -8.615850e-47 |
| Msa0209360 | Msa0380980 | 0.829521 | 4.913511e-55 | -8.615850e-47 |
| Msa0209360 | Msa0381100 | 0.807866 | 4.099919e-50 | -8.615850e-47 |
| Msa0209360 | Msa0382860 | 0.818290 | 2.117031e-52 | -8.615850e-47 |
| Msa0209360 | Msa0399930 | 0.816979 | 4.181743e-52 | -8.615850e-47 |
| Msa0209360 | Msa0421580 | 0.846291 | 2.382169e-59 | -8.615850e-47 |
| Msa0209360 | Msa0432940 | 0.812217 | 4.737134e-51 | -8.615850e-47 |
| Msa0209360 | Msa0432970 | 0.816158 | 6.387409e-52 | -8.615850e-47 |
| Msa0209360 | Msa0467600 | 0.838521 | 2.736925e-57 | -8.615850e-47 |
| Msa0209360 | Msa0476960 | 0.823189 | 1.583930e-53 | -8.615850e-47 |
| Msa0209360 | Msa0477030 | 0.816847 | 4.478484e-52 | -8.615850e-47 |
| Msa0209360 | Msa0510120 | 0.832560 | 8.815884e-56 | -8.615850e-47 |
| Msa0209360 | Msa0545820 | 0.817319 | 3.506729e-52 | -8.615850e-47 |
| Msa0209360 | Msa0559660 | 0.832878 | 7.353273e-56 | -8.615850e-47 |
| Msa0209360 | Msa0575380 | 0.847045 | 1.482028e-59 | -8.615850e-47 |
| Msa0209360 | Msa0576180 | 0.843267 | 1.556904e-58 | -8.615850e-47 |
| Msa0209360 | Msa0581370 | 0.826314 | 2.903567e-54 | -8.615850e-47 |
| Msa0209360 | Msa0581380 | 0.813223 | 2.853168e-51 | -8.615850e-47 |
| Msa0209360 | Msa0608050 | 0.838189 | 3.334144e-57 | -8.615850e-47 |
| Msa0209360 | Msa0608060 | 0.865913 | 4.181186e-65 | -8.615850e-47 |
| Msa0209360 | Msa0627580 | 0.832011 | 1.205555e-55 | -8.615850e-47 |
| Msa0209360 | Msa0647320 | 0.836239 | 1.051206e-56 | -8.615850e-47 |
| Msa0209360 | Msa0648430 | 0.835408 | 1.707680e-56 | -8.615850e-47 |
| Msa0209360 | Msa0648440 | 0.856471 | 3.146110e-62 | -8.615850e-47 |
| Msa0209360 | Msa0654420 | 0.819561 | 1.088523e-52 | -8.615850e-47 |
| Msa0209360 | Msa0654480 | 0.818247 | 2.165978e-52 | -8.615850e-47 |
| Msa0209360 | Msa0690190 | 0.811061 | 8.451394e-51 | -8.615850e-47 |
| Msa0209360 | Msa0690930 | 0.821995 | 3.001802e-53 | -8.615850e-47 |
| Msa0209360 | Msa0719740 | 0.831743 | 1.404186e-55 | -8.615850e-47 |
| Msa0209360 | Msa0802750 | 0.836404 | 9.547404e-57 | -8.615850e-47 |
| Msa0209360 | Msa0841060 | 0.832464 | 9.313754e-56 | -8.615850e-47 |
| Msa0209360 | Msa0887100 | -0.817451 | 3.275696e-52 | -8.615850e-47 |
| Msa0209360 | Msa0930210 | 0.848169 | 7.275220e-60 | -8.615850e-47 |
| Msa0209360 | Msa0950470 | -0.808656 | 2.782566e-50 | -8.615850e-47 |
| Msa0209360 | Msa0950570 | -0.806610 | 7.567044e-50 | -8.615850e-47 |
| Msa0209360 | Msa1031180 | 0.832335 | 1.002451e-55 | -8.615850e-47 |
| Msa0209360 | Msa1040380 | 0.800103 | 1.686364e-48 | -8.615850e-47 |
| Msa0209360 | Msa1070360 | 0.838693 | 2.471522e-57 | -8.615850e-47 |
| Msa0209360 | Msa1083130 | 0.808869 | 2.505893e-50 | -8.615850e-47 |
| Msa0209360 | Msa1088150 | 0.817327 | 3.492713e-52 | -8.615850e-47 |
| Msa0209360 | Msa1088160 | 0.853807 | 1.871463e-61 | -8.615850e-47 |
| Msa0209360 | Msa1119430 | 0.825991 | 3.465747e-54 | -8.615850e-47 |
| Msa0209360 | Msa1127910 | 0.838256 | 3.204724e-57 | -8.615850e-47 |
| Msa0209360 | Msa1162750 | 0.824631 | 7.271074e-54 | -8.615850e-47 |
| Msa0209360 | Msa1175380 | 0.807057 | 6.085655e-50 | -8.615850e-47 |
| Msa0209360 | Msa1218320 | 0.823622 | 1.254497e-53 | -8.615850e-47 |
| Msa0209360 | Msa1218360 | 0.823709 | 1.197082e-53 | -8.615850e-47 |
| Msa0209360 | Msa1221290 | 0.810033 | 1.409193e-50 | -8.615850e-47 |
| Msa0209360 | Msa1221310 | 0.804718 | 1.888542e-49 | -8.615850e-47 |
| Msa0209360 | Msa1235470 | 0.801668 | 8.076511e-49 | -8.615850e-47 |
| Msa0209360 | Msa1236860 | -0.820872 | 5.451734e-53 | -8.615850e-47 |
| Msa0209360 | Msa1265290 | 0.807192 | 5.699365e-50 | -8.615850e-47 |
| Msa0209360 | Msa1295470 | -0.800953 | 1.131563e-48 | -8.615850e-47 |
| Msa0209360 | Msa1315760 | 0.823690 | 1.209338e-53 | -8.615850e-47 |
| Msa0209360 | Msa1317240 | -0.802014 | 6.860105e-49 | -8.615850e-47 |
| Msa0209360 | Msa1337450 | 0.833876 | 4.146357e-56 | -8.615850e-47 |
| Msa0209360 | Msa1371300 | 0.810366 | 1.194738e-50 | -8.615850e-47 |
| Msa0209360 | Msa1412500 | 0.802591 | 5.215975e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0209360 | MtrunA17_Chr4g0063011 | 89.558 | 498 | 52 | 0 | 24 | 521 | 3 | 500 | 0.0 | 939 |
| Msa0209360 | MtrunA17_Chr1g0188051 | 75.889 | 506 | 122 | 0 | 16 | 521 | 7 | 512 | 0.0 | 825 |
| Msa0209360 | MtrunA17_Chr1g0166191 | 77.485 | 493 | 111 | 0 | 29 | 521 | 26 | 518 | 0.0 | 816 |
| Msa0209360 | MtrunA17_Chr2g0306781 | 99.200 | 375 | 3 | 0 | 147 | 521 | 31 | 405 | 0.0 | 778 |
| Msa0209360 | MtrunA17_Chr4g0035081 | 68.635 | 491 | 153 | 1 | 25 | 515 | 13 | 502 | 0.0 | 713 |
| Msa0209360 | MtrunA17_Chr7g0276251 | 65.737 | 502 | 157 | 6 | 27 | 516 | 31 | 529 | 0.0 | 669 |
| Msa0209360 | MtrunA17_Chr1g0209881 | 63.136 | 491 | 180 | 1 | 28 | 518 | 4 | 493 | 0.0 | 638 |
| Msa0209360 | MtrunA17_Chr5g0423521 | 60.081 | 491 | 195 | 1 | 28 | 518 | 4 | 493 | 0.0 | 617 |
| Msa0209360 | MtrunA17_Chr7g0250661 | 98.983 | 295 | 3 | 0 | 227 | 521 | 1 | 295 | 0.0 | 612 |
| Msa0209360 | MtrunA17_Chr6g0480561 | 60.917 | 458 | 173 | 2 | 66 | 517 | 13 | 470 | 0.0 | 578 |
| Msa0209360 | MtrunA17_Chr3g0136561 | 57.267 | 461 | 186 | 3 | 66 | 515 | 443 | 903 | 0.0 | 575 |
| Msa0209360 | MtrunA17_Chr2g0282281 | 53.734 | 482 | 209 | 5 | 29 | 507 | 33 | 503 | 1.70e-171 | 493 |
| Msa0209360 | MtrunA17_Chr2g0295781 | 49.890 | 455 | 210 | 7 | 73 | 515 | 3 | 451 | 1.67e-157 | 456 |
| Msa0209360 | MtrunA17_Chr2g0277841 | 52.683 | 410 | 191 | 3 | 108 | 516 | 45 | 452 | 9.42e-157 | 454 |
| Msa0209360 | MtrunA17_Chr7g0276241 | 65.052 | 289 | 94 | 2 | 227 | 513 | 1 | 284 | 1.01e-139 | 405 |
| Msa0209360 | MtrunA17_Chr1g0204301 | 47.059 | 408 | 215 | 1 | 107 | 513 | 77 | 484 | 1.59e-135 | 401 |
| Msa0209360 | MtrunA17_Chr7g0250651 | 98.925 | 186 | 2 | 0 | 11 | 196 | 1 | 186 | 6.39e-131 | 378 |
| Msa0209360 | MtrunA17_Chr3g0115021 | 46.472 | 411 | 218 | 2 | 104 | 513 | 74 | 483 | 1.10e-130 | 389 |
| Msa0209360 | MtrunA17_Chr3g0115041 | 46.472 | 411 | 218 | 2 | 104 | 513 | 74 | 483 | 1.20e-130 | 389 |
| Msa0209360 | MtrunA17_Chr6g0469631 | 46.535 | 404 | 214 | 2 | 111 | 513 | 80 | 482 | 3.27e-122 | 367 |
| Msa0209360 | MtrunA17_Chr6g0461631 | 63.922 | 255 | 92 | 0 | 262 | 516 | 3 | 257 | 8.51e-120 | 353 |
| Msa0209360 | MtrunA17_Chr4g0026871 | 68.142 | 226 | 71 | 1 | 291 | 515 | 2 | 227 | 6.43e-110 | 326 |
| Msa0209360 | MtrunA17_Chr1g0212951 | 39.954 | 433 | 227 | 7 | 108 | 514 | 28 | 453 | 3.49e-109 | 333 |
| Msa0209360 | MtrunA17_Chr4g0030601 | 39.817 | 437 | 245 | 6 | 86 | 512 | 5 | 433 | 9.03e-107 | 327 |
| Msa0209360 | MtrunA17_Chr4g0030591 | 38.170 | 448 | 250 | 5 | 82 | 512 | 5 | 442 | 5.41e-106 | 325 |
| Msa0209360 | MtrunA17_Chr2g0327721 | 39.813 | 427 | 226 | 6 | 108 | 512 | 27 | 444 | 1.25e-104 | 322 |
| Msa0209360 | MtrunA17_Chr4g0030581 | 38.288 | 444 | 254 | 4 | 82 | 512 | 5 | 441 | 3.23e-102 | 315 |
| Msa0209360 | MtrunA17_Chr4g0026791 | 62.360 | 178 | 66 | 1 | 291 | 467 | 2 | 179 | 8.43e-75 | 234 |
| Msa0209360 | MtrunA17_Chr4g0026721 | 67.296 | 159 | 52 | 0 | 357 | 515 | 1 | 159 | 7.77e-74 | 231 |
| Msa0209360 | MtrunA17_Chr6g0461621 | 49.145 | 234 | 111 | 4 | 43 | 274 | 2 | 229 | 7.05e-68 | 218 |
| Msa0209360 | MtrunA17_Chr4g0026861 | 49.519 | 208 | 99 | 2 | 63 | 265 | 9 | 215 | 3.59e-65 | 210 |
| Msa0209360 | MtrunA17_Chr4g0026801 | 47.967 | 123 | 64 | 0 | 86 | 208 | 36 | 158 | 4.94e-35 | 129 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0209360 | AT2G26640.1 | 82.711 | 509 | 87 | 1 | 13 | 521 | 2 | 509 | 0.0 | 900 |
| Msa0209360 | AT1G04220.1 | 72.079 | 505 | 132 | 5 | 25 | 521 | 18 | 521 | 0.0 | 764 |
| Msa0209360 | AT5G43760.1 | 74.239 | 493 | 121 | 3 | 35 | 521 | 34 | 526 | 0.0 | 735 |
| Msa0209360 | AT1G19440.1 | 68.712 | 489 | 152 | 1 | 25 | 513 | 25 | 512 | 0.0 | 715 |
| Msa0209360 | AT2G16280.1 | 67.894 | 489 | 156 | 1 | 27 | 515 | 23 | 510 | 0.0 | 705 |
| Msa0209360 | AT1G01120.1 | 62.828 | 495 | 178 | 3 | 27 | 515 | 32 | 526 | 0.0 | 660 |
| Msa0209360 | AT1G68530.1 | 61.837 | 490 | 186 | 1 | 29 | 518 | 6 | 494 | 0.0 | 644 |
| Msa0209360 | AT4G34510.1 | 63.522 | 477 | 167 | 3 | 40 | 515 | 15 | 485 | 0.0 | 638 |
| Msa0209360 | AT1G25450.1 | 61.224 | 490 | 189 | 1 | 29 | 518 | 1 | 489 | 0.0 | 628 |
| Msa0209360 | AT2G26250.1 | 55.238 | 525 | 202 | 5 | 18 | 513 | 28 | 548 | 0.0 | 601 |
| Msa0209360 | AT4G34520.1 | 58.025 | 486 | 192 | 3 | 41 | 515 | 6 | 490 | 0.0 | 573 |
| Msa0209360 | AT4G34250.1 | 57.851 | 484 | 197 | 3 | 38 | 515 | 5 | 487 | 0.0 | 573 |
| Msa0209360 | AT2G15090.1 | 58.511 | 470 | 184 | 5 | 55 | 515 | 12 | 479 | 0.0 | 558 |
| Msa0209360 | AT2G46720.1 | 60.142 | 424 | 164 | 2 | 97 | 515 | 42 | 465 | 0.0 | 553 |
| Msa0209360 | AT3G10280.1 | 58.962 | 424 | 162 | 3 | 97 | 515 | 42 | 458 | 0.0 | 534 |
| Msa0209360 | AT1G71160.1 | 50.943 | 424 | 204 | 4 | 92 | 513 | 25 | 446 | 2.81e-158 | 459 |
| Msa0209360 | AT1G68530.2 | 57.849 | 344 | 145 | 0 | 29 | 372 | 6 | 349 | 1.34e-145 | 423 |
| Msa0209360 | AT5G49070.1 | 49.412 | 425 | 207 | 4 | 97 | 516 | 35 | 456 | 1.45e-144 | 424 |
| Msa0209360 | AT3G52160.1 | 44.969 | 487 | 197 | 5 | 30 | 504 | 22 | 449 | 2.69e-141 | 415 |
| Msa0209360 | AT3G52160.2 | 50.959 | 365 | 148 | 2 | 140 | 504 | 3 | 336 | 1.63e-130 | 383 |
| Msa0209360 | AT5G04530.1 | 39.623 | 424 | 245 | 5 | 97 | 512 | 17 | 437 | 6.75e-107 | 327 |
| Msa0209360 | AT2G28630.2 | 40.515 | 427 | 225 | 7 | 108 | 512 | 27 | 446 | 1.30e-106 | 327 |
| Msa0209360 | AT2G28630.1 | 40.515 | 427 | 225 | 7 | 108 | 512 | 27 | 446 | 1.30e-106 | 327 |
| Msa0209360 | AT1G07720.1 | 40.758 | 422 | 232 | 4 | 108 | 512 | 27 | 447 | 1.86e-105 | 324 |
| Msa0209360 | AT1G07720.2 | 40.758 | 422 | 232 | 4 | 108 | 512 | 70 | 490 | 3.01e-105 | 325 |
| Msa0209360 | AT5G49070.2 | 44.444 | 279 | 154 | 1 | 97 | 374 | 35 | 313 | 7.02e-80 | 253 |
| Msa0209360 | AT4G34850.2 | 25.483 | 259 | 149 | 10 | 246 | 492 | 91 | 317 | 2.31e-12 | 68.6 |
| Msa0209360 | AT4G34850.1 | 25.483 | 259 | 149 | 10 | 246 | 492 | 164 | 390 | 5.14e-12 | 68.2 |
Find 155 sgRNAs with CRISPR-Local
Find 188 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAATGATATCTATGATATC+TGG | 0.226248 | 2_1:-46997438 | Msa0209360:CDS |
| ATGCACTAAGAGGATATTTA+TGG | 0.261715 | 2_1:-46997275 | Msa0209360:CDS |
| TACTTTATCAAAAGATCTTA+TGG | 0.267099 | 2_1:-46996606 | Msa0209360:CDS |
| AGAATGACACTTTATCGTTT+TGG | 0.268393 | 2_1:-46996338 | Msa0209360:CDS |
| GGTGGGATGGGATGCAGTGC+TGG | 0.280642 | 2_1:-46996926 | Msa0209360:CDS |
| CTGCAATTCTACTTTCTAAC+AGG | 0.282789 | 2_1:-46996751 | Msa0209360:CDS |
| CGATGAGATCCACCAGTTTC+CGG | 0.286351 | 2_1:-46996141 | Msa0209360:CDS |
| TTCCTAGCTTCTTTCATTGA+AGG | 0.317480 | 2_1:+46997127 | None:intergenic |
| ATTTAGATGGCAGAAATTCT+TGG | 0.321018 | 2_1:+46996110 | None:intergenic |
| ATCAGAATTCCAATGTCTTT+AGG | 0.328553 | 2_1:+46997043 | None:intergenic |
| AGCTTGAAATCCGGAATATA+AGG | 0.330746 | 2_1:+46996458 | None:intergenic |
| GGTGTGGACCAATTGGTATT+TGG | 0.335798 | 2_1:+46996709 | None:intergenic |
| TGGCAAATAGCATTTGGTTC+TGG | 0.340846 | 2_1:-46996236 | Msa0209360:CDS |
| AAAACAAACATTACCACGTT+GGG | 0.342115 | 2_1:-46996563 | Msa0209360:CDS |
| GTGCATTTGCGAGACTCTTC+CGG | 0.354359 | 2_1:+46997292 | None:intergenic |
| CAAGTTCTGGTCTTGAGGTT+TGG | 0.356478 | 2_1:-46995961 | Msa0209360:three_prime_UTR |
| ATTCTGATATAGTCAAGTTC+TGG | 0.359567 | 2_1:-46995974 | Msa0209360:three_prime_UTR |
| TCCTTTCTTGATCCTTCCCT+TGG | 0.368172 | 2_1:+46996268 | None:intergenic |
| AAAGATCTTATGGCCGTTGC+AGG | 0.375775 | 2_1:-46996596 | Msa0209360:CDS |
| TTCGAATTGTTTGTTCCGTA+TGG | 0.380907 | 2_1:-46996780 | Msa0209360:CDS |
| AGCTTCTTTCATTGAAGGAT+TGG | 0.386247 | 2_1:+46997132 | None:intergenic |
| ACACATTCTTTCTATTGAAA+TGG | 0.387431 | 2_1:-46995834 | Msa0209360:three_prime_UTR |
| TTTAAACTACATCATTTAGA+TGG | 0.399579 | 2_1:+46996097 | None:intergenic |
| AGCTGTTGAACTGGTGGAAC+TGG | 0.405287 | 2_1:-46996039 | Msa0209360:three_prime_UTR |
| ACAACCAACGCATACGAGTT+AGG | 0.410167 | 2_1:+46996860 | None:intergenic |
| AAGCTTGGATCGATCGTTCC+CGG | 0.410332 | 2_1:+46996805 | None:intergenic |
| AGGACGAGTCATAAAGTAAA+AGG | 0.410912 | 2_1:+46997351 | None:intergenic |
| GCTTCTTTCATTGAAGGATT+GGG | 0.411634 | 2_1:+46997133 | None:intergenic |
| TTGGAACATCGACCGGAAAC+TGG | 0.414672 | 2_1:+46996129 | None:intergenic |
| GAAGATAAAGCCTTATATTC+CGG | 0.417524 | 2_1:-46996468 | Msa0209360:CDS |
| GCGCAGTATGGAAGGCTCTA+AGG | 0.417809 | 2_1:-46996199 | Msa0209360:CDS |
| AGAACATGGCAAATAGCATT+TGG | 0.419756 | 2_1:-46996242 | Msa0209360:CDS |
| GAAGCGGAGGCAGTTATGTT+TGG | 0.419896 | 2_1:-46997103 | Msa0209360:CDS |
| TCAAGTGCAACAGCGCAGTA+TGG | 0.422431 | 2_1:-46996211 | Msa0209360:CDS |
| CGATAAAGTGTCATTCTTGA+CGG | 0.427252 | 2_1:+46996344 | None:intergenic |
| GGAATGCTTAGAACAGCTTC+TGG | 0.428265 | 2_1:+46997157 | None:intergenic |
| TGGAGAACATCACGTTGAAT+TGG | 0.436866 | 2_1:-46996832 | Msa0209360:CDS |
| ATCCTTGAGAGATCTGGTCT+TGG | 0.439851 | 2_1:-46997196 | Msa0209360:CDS |
| CGAAAGATCCTTGAGAGATC+TGG | 0.441571 | 2_1:-46997202 | Msa0209360:CDS |
| CTGTTCTTCGCTACGTTGGT+TGG | 0.446813 | 2_1:-46996509 | Msa0209360:CDS |
| TGCGAACGGTGTGGACCAAT+TGG | 0.448066 | 2_1:+46996702 | None:intergenic |
| GAAGCTGTCTCCATGGCATA+TGG | 0.449190 | 2_1:-46996369 | Msa0209360:CDS |
| GGTACATGCCATGAGTGATT+AGG | 0.451469 | 2_1:+46997515 | None:intergenic |
| CAGTTCGCTTTGGTACGAAT+TGG | 0.452777 | 2_1:-46996303 | Msa0209360:CDS |
| AAGGGAAAATTTCAACTGAT+AGG | 0.456168 | 2_1:+46995759 | None:intergenic |
| GTGGGATGGGATGCAGTGCT+GGG | 0.466651 | 2_1:-46996925 | Msa0209360:CDS |
| CCTCTTTCTTTCACCACTTG+TGG | 0.470663 | 2_1:-46997494 | Msa0209360:CDS |
| CAATGATATCTATGATATCT+GGG | 0.474517 | 2_1:-46997437 | Msa0209360:CDS |
| CGACGACGATGGCGCTAACA+AGG | 0.474648 | 2_1:+46997600 | None:intergenic |
| GAGAAGATCCAAATACCAAT+TGG | 0.476259 | 2_1:-46996717 | Msa0209360:CDS |
| ACACCTCTAGCAGTTCGCTT+TGG | 0.480585 | 2_1:-46996313 | Msa0209360:CDS |
| TCGAATTGTTTGTTCCGTAT+GGG | 0.486272 | 2_1:-46996779 | Msa0209360:CDS |
| ATCTCTCAAGGATCTTTCGT+TGG | 0.488205 | 2_1:+46997206 | None:intergenic |
| TTTACTTTATGACTCGTCCT+AGG | 0.488605 | 2_1:-46997348 | Msa0209360:CDS |
| GAAGACGACAATGGCAAAGT+TGG | 0.504336 | 2_1:-46996632 | Msa0209360:CDS |
| AACATAATGAGTTACAATCT+TGG | 0.513615 | 2_1:-46996947 | Msa0209360:CDS |
| ATTGTTTGTTCCGTATGGGA+GGG | 0.513671 | 2_1:-46996775 | Msa0209360:CDS |
| TCAAAAGCTAGCTTGAAATC+CGG | 0.514010 | 2_1:+46996449 | None:intergenic |
| AGCGAAGAACAGCAACTGTT+CGG | 0.515852 | 2_1:+46996520 | None:intergenic |
| ATCTAAAACAGCTCTTCCAC+CGG | 0.515874 | 2_1:+46996409 | None:intergenic |
| GCCAAGGGAAGGATCAAGAA+AGG | 0.516116 | 2_1:-46996269 | Msa0209360:CDS |
| GAGTTACAATCTTGGTGGGA+TGG | 0.516163 | 2_1:-46996939 | Msa0209360:CDS |
| GAAATTCTTGGAACATCGAC+CGG | 0.516259 | 2_1:+46996122 | None:intergenic |
| ATCACGTTGAATTGGTATCC+CGG | 0.518078 | 2_1:-46996824 | Msa0209360:CDS |
| AGCTTGGATCGATCGTTCCC+GGG | 0.518481 | 2_1:+46996806 | None:intergenic |
| AAATCGACAATACATGTGAA+TGG | 0.518712 | 2_1:+46998232 | None:intergenic |
| AATGTAATCCATGATTTGCT+TGG | 0.519045 | 2_1:-46995878 | Msa0209360:three_prime_UTR |
| TTGTTTGTTCCGTATGGGAG+GGG | 0.520242 | 2_1:-46996774 | Msa0209360:CDS |
| CAAACAATTCGAAACAAGCT+TGG | 0.524897 | 2_1:+46996790 | None:intergenic |
| CTCCAAGACCAGATCTCTCA+AGG | 0.527098 | 2_1:+46997194 | None:intergenic |
| GTGCAACAGCGCAGTATGGA+AGG | 0.529765 | 2_1:-46996207 | Msa0209360:CDS |
| CCACACCGTTCGCACTAACA+AGG | 0.531499 | 2_1:-46996693 | Msa0209360:CDS |
| CTACAAAAGAGAAGAACCCT+TGG | 0.534529 | 2_1:-46996166 | Msa0209360:CDS |
| GAGGGCGAGTGGTTTCTTCA+CGG | 0.536357 | 2_1:-46997245 | Msa0209360:CDS |
| AGTCTCGCAAATGCACTAAG+AGG | 0.536367 | 2_1:-46997285 | Msa0209360:CDS |
| ATTGCAGAGAGTGACGGAGT+TGG | 0.537030 | 2_1:+46996998 | None:intergenic |
| AATTGTTTGTTCCGTATGGG+AGG | 0.537893 | 2_1:-46996776 | Msa0209360:CDS |
| TCTTGCTAAAGAGCTTCTCC+AGG | 0.541294 | 2_1:-46996888 | Msa0209360:CDS |
| TTAGGTGGTAGCTGTTGAAC+TGG | 0.541370 | 2_1:-46996048 | Msa0209360:three_prime_UTR |
| GTATGCGTTGGTTGTTAGCA+TGG | 0.541573 | 2_1:-46996852 | Msa0209360:CDS |
| GATATCATAGATATCATTGA+GGG | 0.541632 | 2_1:+46997441 | None:intergenic |
| ATAACGTACATCACTACCAC+AGG | 0.545447 | 2_1:+46995910 | None:intergenic |
| GCAACTGTTCGGACGTTGGA+AGG | 0.547179 | 2_1:+46996531 | None:intergenic |
| TTTCAAGGCATCACCTGCAA+CGG | 0.548387 | 2_1:+46996583 | None:intergenic |
| CCACAAGTGGTGAAAGAAAG+AGG | 0.552043 | 2_1:+46997494 | None:intergenic |
| TCTACTTTCTAACAGGGGAT+CGG | 0.553751 | 2_1:-46996744 | Msa0209360:CDS |
| GAACATTTCTGCATTCATGC+CGG | 0.553989 | 2_1:-46996428 | Msa0209360:CDS |
| GAGAGTCGAGCAAATAATAA+CGG | 0.554120 | 2_1:+46997390 | None:intergenic |
| AGTTACAATCTTGGTGGGAT+GGG | 0.556990 | 2_1:-46996938 | Msa0209360:CDS |
| AGCACCCTTGTTAGTGCGAA+CGG | 0.557174 | 2_1:+46996688 | None:intergenic |
| TGGTGGATCTCATCGATCCA+AGG | 0.558878 | 2_1:+46996149 | None:intergenic |
| TTAACAAGGTAGACTGGCCT+AGG | 0.559143 | 2_1:+46997331 | None:intergenic |
| TGGAACTGGCTGAGTGTAAG+AGG | 0.559439 | 2_1:-46996025 | Msa0209360:three_prime_UTR |
| AATGGTTACCAAGCAAATCA+TGG | 0.560553 | 2_1:+46995870 | None:intergenic |
| TCATCCTAACTCGTATGCGT+TGG | 0.563252 | 2_1:-46996864 | Msa0209360:CDS |
| ATTGGCTTACACGGAAGCCA+AGG | 0.568482 | 2_1:-46996285 | Msa0209360:CDS |
| AAAACTTGAAGCTGTCTCCA+TGG | 0.569815 | 2_1:-46996376 | Msa0209360:CDS |
| ATAGTCAAGTTCTGGTCTTG+AGG | 0.573571 | 2_1:-46995966 | Msa0209360:three_prime_UTR |
| AAATTGAAGTATGTGAAGCT+TGG | 0.574482 | 2_1:-46997547 | Msa0209360:CDS |
| GAATTGCAGCCCCTCCCATA+CGG | 0.574490 | 2_1:+46996765 | None:intergenic |
| GAAAACAAACATTACCACGT+TGG | 0.574589 | 2_1:-46996564 | Msa0209360:CDS |
| AACAGCAACTGTTCGGACGT+TGG | 0.575994 | 2_1:+46996527 | None:intergenic |
| ACGGTAAAGCCTAAAGACAT+TGG | 0.576657 | 2_1:-46997052 | Msa0209360:CDS |
| TTTCTAACAGGGGATCGGAT+AGG | 0.576964 | 2_1:-46996739 | Msa0209360:CDS |
| GAGAAATTAACAAGGTAGAC+TGG | 0.577191 | 2_1:+46997325 | None:intergenic |
| CATACGAGTTAGGATGAACC+TGG | 0.577273 | 2_1:+46996870 | None:intergenic |
| TTGGTACGAATTGGCTTACA+CGG | 0.578204 | 2_1:-46996294 | Msa0209360:CDS |
| TCACGTTGAATTGGTATCCC+GGG | 0.579569 | 2_1:-46996823 | Msa0209360:CDS |
| TAATTTCTCGTGTTACAAGC+CGG | 0.580512 | 2_1:-46997311 | Msa0209360:CDS |
| TGGTCTTGAGGTTTGGTGTG+CGG | 0.584202 | 2_1:-46995954 | Msa0209360:three_prime_UTR |
| TATCATTACCTAATCACTCA+TGG | 0.585224 | 2_1:-46997523 | Msa0209360:CDS |
| GGAAGGATCCGCGACGACGA+TGG | 0.585504 | 2_1:+46997589 | None:intergenic |
| TCTTTCATTGAAGGATTGGG+AGG | 0.589318 | 2_1:+46997136 | None:intergenic |
| CATTTCTGCATTCATGCCGG+TGG | 0.590314 | 2_1:-46996425 | Msa0209360:CDS |
| ATCCTTCAATGAAAGAAGCT+AGG | 0.592042 | 2_1:-46997129 | Msa0209360:CDS |
| ATGGATCACTCGAGGGCGAG+TGG | 0.595528 | 2_1:-46997256 | Msa0209360:CDS |
| ATGATCATTGCAGAGAGTGA+CGG | 0.597131 | 2_1:+46996992 | None:intergenic |
| GAACATCGACCGGAAACTGG+TGG | 0.598498 | 2_1:+46996132 | None:intergenic |
| ATAATGAGTTACAATCTTGG+TGG | 0.599058 | 2_1:-46996944 | Msa0209360:CDS |
| TAATGAGTTACAATCTTGGT+GGG | 0.599305 | 2_1:-46996943 | Msa0209360:CDS |
| GTTGCTGTTCTTCGCTACGT+TGG | 0.607168 | 2_1:-46996513 | Msa0209360:CDS |
| TGCAATTCTACTTTCTAACA+GGG | 0.608164 | 2_1:-46996750 | Msa0209360:CDS |
| TTGTATGTATCAACATTAGG+TGG | 0.610070 | 2_1:-46996063 | Msa0209360:three_prime_UTR |
| TGTGTAATGCATAGCTGCAA+TGG | 0.611086 | 2_1:+46995852 | None:intergenic |
| GGTGGATCTCATCGATCCAA+GGG | 0.617008 | 2_1:+46996150 | None:intergenic |
| GTACCAAAGCGAACTGCTAG+AGG | 0.619086 | 2_1:+46996310 | None:intergenic |
| TCTACCTACTGTCAATCAAG+TGG | 0.619920 | 2_1:+46995784 | None:intergenic |
| AGATATCATAGATATCATTG+AGG | 0.623017 | 2_1:+46997440 | None:intergenic |
| GCTGCAATTAACACCACAAG+TGG | 0.623028 | 2_1:+46997481 | None:intergenic |
| TGCTTAGAACAGCTTCTGGT+AGG | 0.624810 | 2_1:+46997161 | None:intergenic |
| GGATATTTATGGATCACTCG+AGG | 0.626023 | 2_1:-46997264 | Msa0209360:CDS |
| TTTCCCACTTGATTGACAGT+AGG | 0.627605 | 2_1:-46995788 | Msa0209360:three_prime_UTR |
| CCTTGTTAGTGCGAACGGTG+TGG | 0.627883 | 2_1:+46996693 | None:intergenic |
| CGCAGAAATTTATTTCCCTG+TGG | 0.627893 | 2_1:-46995926 | Msa0209360:three_prime_UTR |
| CTACCTACTGTCAATCAAGT+GGG | 0.633156 | 2_1:+46995785 | None:intergenic |
| TCAAGAAAGGAGATAGAACA+TGG | 0.636177 | 2_1:-46996256 | Msa0209360:CDS |
| AAACAAACATTACCACGTTG+GGG | 0.638025 | 2_1:-46996562 | Msa0209360:CDS |
| AGAAGCTAGGAAAGAAGCGG+AGG | 0.638732 | 2_1:-46997116 | Msa0209360:CDS |
| CTTGACGGCTCCATATGCCA+TGG | 0.639071 | 2_1:+46996359 | None:intergenic |
| TCGGACGTTGGAAGGACAAG+TGG | 0.640146 | 2_1:+46996539 | None:intergenic |
| GACGACGATGGCGCTAACAA+GGG | 0.641367 | 2_1:+46997601 | None:intergenic |
| GATATTTATGGATCACTCGA+GGG | 0.648472 | 2_1:-46997263 | Msa0209360:CDS |
| TTGGCTTACACGGAAGCCAA+GGG | 0.648617 | 2_1:-46996284 | Msa0209360:CDS |
| CTTACACGGAAGCCAAGGGA+AGG | 0.652154 | 2_1:-46996280 | Msa0209360:CDS |
| GAAAGAAGCTAGGAAAGAAG+CGG | 0.654182 | 2_1:-46997119 | Msa0209360:CDS |
| GGTGGTAGCTGTTGAACTGG+TGG | 0.662600 | 2_1:-46996045 | Msa0209360:three_prime_UTR |
| ATCAATCACTATAAGCTGAG+AGG | 0.664913 | 2_1:-46996971 | Msa0209360:CDS |
| GCAATTCTACTTTCTAACAG+GGG | 0.671034 | 2_1:-46996749 | Msa0209360:CDS |
| TGTTAGCGCCATCGTCGTCG+CGG | 0.673997 | 2_1:-46997597 | Msa0209360:CDS |
| CACACCGTTCGCACTAACAA+GGG | 0.677053 | 2_1:-46996692 | Msa0209360:CDS |
| ACACAAGAAGAAGACGACAA+TGG | 0.692603 | 2_1:-46996641 | Msa0209360:CDS |
| GGCGAGTGGTTTCTTCACGG+AGG | 0.715615 | 2_1:-46997242 | Msa0209360:CDS |
| TGTAACACGAGAAATTAACA+AGG | 0.752828 | 2_1:+46997317 | None:intergenic |
| TAACGTACATCACTACCACA+GGG | 0.758672 | 2_1:+46995911 | None:intergenic |
| AAGGACAAGTGGCCCCAACG+TGG | 0.761089 | 2_1:+46996550 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAGTGATTTTAAATTAAAAT+TGG | + | chr2_1:46995847-46995866 | None:intergenic | 10.0% |
| !! | CATTTAAAAATAAAAAACAT+TGG | + | chr2_1:46995988-46996007 | None:intergenic | 10.0% |
| !!! | CAATGTTTTTTATTTTTAAA+TGG | - | chr2_1:46995986-46996005 | Msa0209360:three_prime_UTR | 10.0% |
| !! | AAAAAAAACAAATTAAACTT+TGG | - | chr2_1:46996198-46996217 | Msa0209360:CDS | 10.0% |
| !!! | ATGTATTCAAAATTTTAAAC+AGG | - | chr2_1:46996355-46996374 | Msa0209360:CDS | 15.0% |
| !!! | TGTATTCAAAATTTTAAACA+GGG | - | chr2_1:46996356-46996375 | Msa0209360:CDS | 15.0% |
| !! | GATGTATACAAGAAATAAAA+AGG | - | chr2_1:46996127-46996146 | Msa0209360:CDS | 20.0% |
| !! | AAAGGACAAATTAAATAGAT+AGG | - | chr2_1:46996145-46996164 | Msa0209360:CDS | 20.0% |
| !! | AAGGACAAATTAAATAGATA+GGG | - | chr2_1:46996146-46996165 | Msa0209360:CDS | 20.0% |
| !! | TACTTTATCAAAAGATCTTA+TGG | - | chr2_1:46997402-46997421 | Msa0209360:CDS | 20.0% |
| !! | TTTAAACTACATCATTTAGA+TGG | + | chr2_1:46997914-46997933 | None:intergenic | 20.0% |
| !!! | TTTTTGTATGTATCAACATT+AGG | - | chr2_1:46997942-46997961 | Msa0209360:intron | 20.0% |
| !!! | GGAAATCACTTTTTTATTAA+TGG | + | chr2_1:46998205-46998224 | None:intergenic | 20.0% |
| ! | AATTTGAATAAGAGAGAGTT+AGG | + | chr2_1:46995965-46995984 | None:intergenic | 25.0% |
| ! | TTTCATATGAAATTCCTATC+TGG | - | chr2_1:46996099-46996118 | Msa0209360:exon | 25.0% |
| ! | TTCATATGAAATTCCTATCT+GGG | - | chr2_1:46996100-46996119 | Msa0209360:exon | 25.0% |
| ! | GGGTTTAATAATTGCATAAA+AGG | - | chr2_1:46996166-46996185 | Msa0209360:CDS | 25.0% |
| ! | ATATATAGCACAGAGAAATA+TGG | + | chr2_1:46996296-46996315 | None:intergenic | 25.0% |
| !!! | TTCACTGATTTTTTGAAATC+TGG | + | chr2_1:46996443-46996462 | None:intergenic | 25.0% |
| ! | GATATCATAGATATCATTGA+GGG | + | chr2_1:46996570-46996589 | None:intergenic | 25.0% |
| ! | AGATATCATAGATATCATTG+AGG | + | chr2_1:46996571-46996590 | None:intergenic | 25.0% |
| ! | TCAATGATATCTATGATATC+TGG | - | chr2_1:46996570-46996589 | Msa0209360:CDS | 25.0% |
| ! | CAATGATATCTATGATATCT+GGG | - | chr2_1:46996571-46996590 | Msa0209360:CDS | 25.0% |
| ! | AACATAATGAGTTACAATCT+TGG | - | chr2_1:46997061-46997080 | Msa0209360:CDS | 25.0% |
| ! | ACACATTCTTTCTATTGAAA+TGG | - | chr2_1:46998174-46998193 | Msa0209360:intron | 25.0% |
| AAATCGACAATACATGTGAA+TGG | + | chr2_1:46995779-46995798 | None:intergenic | 30.0% | |
| GGAATAAGAGAGAAATGAAA+GGG | + | chr2_1:46995826-46995845 | None:intergenic | 30.0% | |
| TGGAATAAGAGAGAAATGAA+AGG | + | chr2_1:46995827-46995846 | None:intergenic | 30.0% | |
| !! | TTAAACTTTGGCTTTGTTTC+AGG | - | chr2_1:46996210-46996229 | Msa0209360:CDS | 30.0% |
| !!! | CTGATTTTTTGAAATCTGGA+AGG | + | chr2_1:46996439-46996458 | None:intergenic | 30.0% |
| AAATTGAAGTATGTGAAGCT+TGG | - | chr2_1:46996461-46996480 | Msa0209360:CDS | 30.0% | |
| TATCATTACCTAATCACTCA+TGG | - | chr2_1:46996485-46996504 | Msa0209360:CDS | 30.0% | |
| AAAAGGTCGATAAAAACACA+AGG | + | chr2_1:46996643-46996662 | None:intergenic | 30.0% | |
| TGTAACACGAGAAATTAACA+AGG | + | chr2_1:46996694-46996713 | None:intergenic | 30.0% | |
| ATGCACTAAGAGGATATTTA+TGG | - | chr2_1:46996733-46996752 | Msa0209360:CDS | 30.0% | |
| ATCAGAATTCCAATGTCTTT+AGG | + | chr2_1:46996968-46996987 | None:intergenic | 30.0% | |
| ATAATGAGTTACAATCTTGG+TGG | - | chr2_1:46997064-46997083 | Msa0209360:CDS | 30.0% | |
| TAATGAGTTACAATCTTGGT+GGG | - | chr2_1:46997065-46997084 | Msa0209360:CDS | 30.0% | |
| TGCAATTCTACTTTCTAACA+GGG | - | chr2_1:46997258-46997277 | Msa0209360:CDS | 30.0% | |
| AAAACAAACATTACCACGTT+GGG | - | chr2_1:46997445-46997464 | Msa0209360:CDS | 30.0% | |
| ! | GAAGATAAAGCCTTATATTC+CGG | - | chr2_1:46997540-46997559 | Msa0209360:CDS | 30.0% |
| ! | AGAATGACACTTTATCGTTT+TGG | - | chr2_1:46997670-46997689 | Msa0209360:intron | 30.0% |
| ATTTAGATGGCAGAAATTCT+TGG | + | chr2_1:46997901-46997920 | None:intergenic | 30.0% | |
| TTGTATGTATCAACATTAGG+TGG | - | chr2_1:46997945-46997964 | Msa0209360:intron | 30.0% | |
| ATTCTGATATAGTCAAGTTC+TGG | - | chr2_1:46998034-46998053 | Msa0209360:intron | 30.0% | |
| !! | AATGTAATCCATGATTTGCT+TGG | - | chr2_1:46998130-46998149 | Msa0209360:intron | 30.0% |
| GTATACATCAAAACCCAGAT+AGG | + | chr2_1:46996116-46996135 | None:intergenic | 35.0% | |
| GAGAGTCGAGCAAATAATAA+CGG | + | chr2_1:46996621-46996640 | None:intergenic | 35.0% | |
| AGGACGAGTCATAAAGTAAA+AGG | + | chr2_1:46996660-46996679 | None:intergenic | 35.0% | |
| TTTACTTTATGACTCGTCCT+AGG | - | chr2_1:46996660-46996679 | Msa0209360:CDS | 35.0% | |
| GAGAAATTAACAAGGTAGAC+TGG | + | chr2_1:46996686-46996705 | None:intergenic | 35.0% | |
| TAATTTCTCGTGTTACAAGC+CGG | - | chr2_1:46996697-46996716 | Msa0209360:CDS | 35.0% | |
| GATATTTATGGATCACTCGA+GGG | - | chr2_1:46996745-46996764 | Msa0209360:CDS | 35.0% | |
| GCTTCTTTCATTGAAGGATT+GGG | + | chr2_1:46996878-46996897 | None:intergenic | 35.0% | |
| AGCTTCTTTCATTGAAGGAT+TGG | + | chr2_1:46996879-46996898 | None:intergenic | 35.0% | |
| ATCCTTCAATGAAAGAAGCT+AGG | - | chr2_1:46996879-46996898 | Msa0209360:CDS | 35.0% | |
| TTCCTAGCTTCTTTCATTGA+AGG | + | chr2_1:46996884-46996903 | None:intergenic | 35.0% | |
| ATCAATCACTATAAGCTGAG+AGG | - | chr2_1:46997037-46997056 | Msa0209360:CDS | 35.0% | |
| CAAACAATTCGAAACAAGCT+TGG | + | chr2_1:46997221-46997240 | None:intergenic | 35.0% | |
| TTCGAATTGTTTGTTCCGTA+TGG | - | chr2_1:46997228-46997247 | Msa0209360:CDS | 35.0% | |
| TCGAATTGTTTGTTCCGTAT+GGG | - | chr2_1:46997229-46997248 | Msa0209360:CDS | 35.0% | |
| CTGCAATTCTACTTTCTAAC+AGG | - | chr2_1:46997257-46997276 | Msa0209360:CDS | 35.0% | |
| GCAATTCTACTTTCTAACAG+GGG | - | chr2_1:46997259-46997278 | Msa0209360:CDS | 35.0% | |
| GAGAAGATCCAAATACCAAT+TGG | - | chr2_1:46997291-46997310 | Msa0209360:CDS | 35.0% | |
| !! | CGTGGTAATGTTTGTTTTCA+AGG | + | chr2_1:46997443-46997462 | None:intergenic | 35.0% |
| GAAAACAAACATTACCACGT+TGG | - | chr2_1:46997444-46997463 | Msa0209360:CDS | 35.0% | |
| AAACAAACATTACCACGTTG+GGG | - | chr2_1:46997446-46997465 | Msa0209360:CDS | 35.0% | |
| AGCTTGAAATCCGGAATATA+AGG | + | chr2_1:46997553-46997572 | None:intergenic | 35.0% | |
| ! | TCAAAAGCTAGCTTGAAATC+CGG | + | chr2_1:46997562-46997581 | None:intergenic | 35.0% |
| ! | CGATAAAGTGTCATTCTTGA+CGG | + | chr2_1:46997667-46997686 | None:intergenic | 35.0% |
| TCAAGAAAGGAGATAGAACA+TGG | - | chr2_1:46997752-46997771 | Msa0209360:intron | 35.0% | |
| AGAACATGGCAAATAGCATT+TGG | - | chr2_1:46997766-46997785 | Msa0209360:intron | 35.0% | |
| AATGGTTACCAAGCAAATCA+TGG | + | chr2_1:46998141-46998160 | None:intergenic | 35.0% | |
| CAGAGAAGACACAGAAATGT+GGG | + | chr2_1:46995896-46995915 | None:intergenic | 40.0% | |
| GGATATTTATGGATCACTCG+AGG | - | chr2_1:46996744-46996763 | Msa0209360:CDS | 40.0% | |
| ATCTCTCAAGGATCTTTCGT+TGG | + | chr2_1:46996805-46996824 | None:intergenic | 40.0% | |
| TCTTTCATTGAAGGATTGGG+AGG | + | chr2_1:46996875-46996894 | None:intergenic | 40.0% | |
| GAAAGAAGCTAGGAAAGAAG+CGG | - | chr2_1:46996889-46996908 | Msa0209360:CDS | 40.0% | |
| !! | TGAGCTGTTTTCGAAGACAA+CGG | - | chr2_1:46996937-46996956 | Msa0209360:CDS | 40.0% |
| ACGGTAAAGCCTAAAGACAT+TGG | - | chr2_1:46996956-46996975 | Msa0209360:CDS | 40.0% | |
| ATGATCATTGCAGAGAGTGA+CGG | + | chr2_1:46997019-46997038 | None:intergenic | 40.0% | |
| AGTTACAATCTTGGTGGGAT+GGG | - | chr2_1:46997070-46997089 | Msa0209360:CDS | 40.0% | |
| TGGAGAACATCACGTTGAAT+TGG | - | chr2_1:46997176-46997195 | Msa0209360:CDS | 40.0% | |
| ATCACGTTGAATTGGTATCC+CGG | - | chr2_1:46997184-46997203 | Msa0209360:CDS | 40.0% | |
| AATTGTTTGTTCCGTATGGG+AGG | - | chr2_1:46997232-46997251 | Msa0209360:CDS | 40.0% | |
| ATTGTTTGTTCCGTATGGGA+GGG | - | chr2_1:46997233-46997252 | Msa0209360:CDS | 40.0% | |
| TCTACTTTCTAACAGGGGAT+CGG | - | chr2_1:46997264-46997283 | Msa0209360:CDS | 40.0% | |
| ACACAAGAAGAAGACGACAA+TGG | - | chr2_1:46997367-46997386 | Msa0209360:CDS | 40.0% | |
| GAACATTTCTGCATTCATGC+CGG | - | chr2_1:46997580-46997599 | Msa0209360:CDS | 40.0% | |
| ! | ATCTAAAACAGCTCTTCCAC+CGG | + | chr2_1:46997602-46997621 | None:intergenic | 40.0% |
| AAAACTTGAAGCTGTCTCCA+TGG | - | chr2_1:46997632-46997651 | Msa0209360:CDS | 40.0% | |
| ! | TTGGTACGAATTGGCTTACA+CGG | - | chr2_1:46997714-46997733 | Msa0209360:intron | 40.0% |
| ! | TGGCAAATAGCATTTGGTTC+TGG | - | chr2_1:46997772-46997791 | Msa0209360:intron | 40.0% |
| ! | CAAGGGTTCTTCTCTTTTGT+AGG | + | chr2_1:46997844-46997863 | None:intergenic | 40.0% |
| CTACAAAAGAGAAGAACCCT+TGG | - | chr2_1:46997842-46997861 | Msa0209360:intron | 40.0% | |
| GAAATTCTTGGAACATCGAC+CGG | + | chr2_1:46997889-46997908 | None:intergenic | 40.0% | |
| !! | ATAGTCAAGTTCTGGTCTTG+AGG | - | chr2_1:46998042-46998061 | Msa0209360:intron | 40.0% |
| CGCAGAAATTTATTTCCCTG+TGG | - | chr2_1:46998082-46998101 | Msa0209360:intron | 40.0% | |
| TAACGTACATCACTACCACA+GGG | + | chr2_1:46998100-46998119 | None:intergenic | 40.0% | |
| ATAACGTACATCACTACCAC+AGG | + | chr2_1:46998101-46998120 | None:intergenic | 40.0% | |
| TGTGTAATGCATAGCTGCAA+TGG | + | chr2_1:46998159-46998178 | None:intergenic | 40.0% | |
| TTTCCCACTTGATTGACAGT+AGG | - | chr2_1:46998220-46998239 | Msa0209360:intron | 40.0% | |
| CTACCTACTGTCAATCAAGT+GGG | + | chr2_1:46998226-46998245 | None:intergenic | 40.0% | |
| TCTACCTACTGTCAATCAAG+TGG | + | chr2_1:46998227-46998246 | None:intergenic | 40.0% | |
| AGAAGACACAGAAATGTGGG+TGG | + | chr2_1:46995893-46995912 | None:intergenic | 45.0% | |
| GCAGAGAAGACACAGAAATG+TGG | + | chr2_1:46995897-46995916 | None:intergenic | 45.0% | |
| AAAGCCAAAGCCAAAGCCAA+AGG | + | chr2_1:46995922-46995941 | None:intergenic | 45.0% | |
| !!! | GCTTTGGCTTTGGCTTTTCA+AGG | - | chr2_1:46995925-46995944 | Msa0209360:three_prime_UTR | 45.0% |
| GGTACATGCCATGAGTGATT+AGG | + | chr2_1:46996496-46996515 | None:intergenic | 45.0% | |
| CCACAAGTGGTGAAAGAAAG+AGG | + | chr2_1:46996517-46996536 | None:intergenic | 45.0% | |
| CCTCTTTCTTTCACCACTTG+TGG | - | chr2_1:46996514-46996533 | Msa0209360:CDS | 45.0% | |
| GCTGCAATTAACACCACAAG+TGG | + | chr2_1:46996530-46996549 | None:intergenic | 45.0% | |
| !! | TTAACAAGGTAGACTGGCCT+AGG | + | chr2_1:46996680-46996699 | None:intergenic | 45.0% |
| AGTCTCGCAAATGCACTAAG+AGG | - | chr2_1:46996723-46996742 | Msa0209360:CDS | 45.0% | |
| CGAAAGATCCTTGAGAGATC+TGG | - | chr2_1:46996806-46996825 | Msa0209360:CDS | 45.0% | |
| ATCCTTGAGAGATCTGGTCT+TGG | - | chr2_1:46996812-46996831 | Msa0209360:CDS | 45.0% | |
| TGCTTAGAACAGCTTCTGGT+AGG | + | chr2_1:46996850-46996869 | None:intergenic | 45.0% | |
| GGAATGCTTAGAACAGCTTC+TGG | + | chr2_1:46996854-46996873 | None:intergenic | 45.0% | |
| GAGTTACAATCTTGGTGGGA+TGG | - | chr2_1:46997069-46997088 | Msa0209360:CDS | 45.0% | |
| TCTTGCTAAAGAGCTTCTCC+AGG | - | chr2_1:46997120-46997139 | Msa0209360:CDS | 45.0% | |
| CATACGAGTTAGGATGAACC+TGG | + | chr2_1:46997141-46997160 | None:intergenic | 45.0% | |
| TCATCCTAACTCGTATGCGT+TGG | - | chr2_1:46997144-46997163 | Msa0209360:CDS | 45.0% | |
| ACAACCAACGCATACGAGTT+AGG | + | chr2_1:46997151-46997170 | None:intergenic | 45.0% | |
| !! | GTATGCGTTGGTTGTTAGCA+TGG | - | chr2_1:46997156-46997175 | Msa0209360:CDS | 45.0% |
| TCACGTTGAATTGGTATCCC+GGG | - | chr2_1:46997185-46997204 | Msa0209360:CDS | 45.0% | |
| TTGTTTGTTCCGTATGGGAG+GGG | - | chr2_1:46997234-46997253 | Msa0209360:CDS | 45.0% | |
| TTTCTAACAGGGGATCGGAT+AGG | - | chr2_1:46997269-46997288 | Msa0209360:CDS | 45.0% | |
| GGTGTGGACCAATTGGTATT+TGG | + | chr2_1:46997302-46997321 | None:intergenic | 45.0% | |
| GAAGACGACAATGGCAAAGT+TGG | - | chr2_1:46997376-46997395 | Msa0209360:CDS | 45.0% | |
| AAAGATCTTATGGCCGTTGC+AGG | - | chr2_1:46997412-46997431 | Msa0209360:CDS | 45.0% | |
| ! | TTTCAAGGCATCACCTGCAA+CGG | + | chr2_1:46997428-46997447 | None:intergenic | 45.0% |
| AGCGAAGAACAGCAACTGTT+CGG | + | chr2_1:46997491-46997510 | None:intergenic | 45.0% | |
| CAGTTCGCTTTGGTACGAAT+TGG | - | chr2_1:46997705-46997724 | Msa0209360:intron | 45.0% | |
| TCCTTTCTTGATCCTTCCCT+TGG | + | chr2_1:46997743-46997762 | None:intergenic | 45.0% | |
| TTAGGTGGTAGCTGTTGAAC+TGG | - | chr2_1:46997960-46997979 | Msa0209360:intron | 45.0% | |
| !! | CAAGTTCTGGTCTTGAGGTT+TGG | - | chr2_1:46998047-46998066 | Msa0209360:intron | 45.0% |
| TGTGTCTTCTCTGCTGCCTT+TGG | - | chr2_1:46995903-46995922 | Msa0209360:three_prime_UTR | 50.0% | |
| ! | TTCTCTGCTGCCTTTGGCTT+TGG | - | chr2_1:46995909-46995928 | Msa0209360:three_prime_UTR | 50.0% |
| GTGCATTTGCGAGACTCTTC+CGG | + | chr2_1:46996719-46996738 | None:intergenic | 50.0% | |
| CTCCAAGACCAGATCTCTCA+AGG | + | chr2_1:46996817-46996836 | None:intergenic | 50.0% | |
| AGAAGCTAGGAAAGAAGCGG+AGG | - | chr2_1:46996892-46996911 | Msa0209360:CDS | 50.0% | |
| GAAGCGGAGGCAGTTATGTT+TGG | - | chr2_1:46996905-46996924 | Msa0209360:CDS | 50.0% | |
| ! | ATTGCAGAGAGTGACGGAGT+TGG | + | chr2_1:46997013-46997032 | None:intergenic | 50.0% |
| AAGCTTGGATCGATCGTTCC+CGG | + | chr2_1:46997206-46997225 | None:intergenic | 50.0% | |
| CACACCGTTCGCACTAACAA+GGG | - | chr2_1:46997316-46997335 | Msa0209360:CDS | 50.0% | |
| AGCACCCTTGTTAGTGCGAA+CGG | + | chr2_1:46997323-46997342 | None:intergenic | 50.0% | |
| AACAGCAACTGTTCGGACGT+TGG | + | chr2_1:46997484-46997503 | None:intergenic | 50.0% | |
| ! | GTTGCTGTTCTTCGCTACGT+TGG | - | chr2_1:46997495-46997514 | Msa0209360:CDS | 50.0% |
| CTGTTCTTCGCTACGTTGGT+TGG | - | chr2_1:46997499-46997518 | Msa0209360:CDS | 50.0% | |
| CATTTCTGCATTCATGCCGG+TGG | - | chr2_1:46997583-46997602 | Msa0209360:CDS | 50.0% | |
| GAAGCTGTCTCCATGGCATA+TGG | - | chr2_1:46997639-46997658 | Msa0209360:intron | 50.0% | |
| ACACCTCTAGCAGTTCGCTT+TGG | - | chr2_1:46997695-46997714 | Msa0209360:intron | 50.0% | |
| GTACCAAAGCGAACTGCTAG+AGG | + | chr2_1:46997701-46997720 | None:intergenic | 50.0% | |
| ! | ATTGGCTTACACGGAAGCCA+AGG | - | chr2_1:46997723-46997742 | Msa0209360:intron | 50.0% |
| TTGGCTTACACGGAAGCCAA+GGG | - | chr2_1:46997724-46997743 | Msa0209360:intron | 50.0% | |
| GCCAAGGGAAGGATCAAGAA+AGG | - | chr2_1:46997739-46997758 | Msa0209360:intron | 50.0% | |
| TCAAGTGCAACAGCGCAGTA+TGG | - | chr2_1:46997797-46997816 | Msa0209360:intron | 50.0% | |
| GGTGGATCTCATCGATCCAA+GGG | + | chr2_1:46997861-46997880 | None:intergenic | 50.0% | |
| ! | TGGTGGATCTCATCGATCCA+AGG | + | chr2_1:46997862-46997881 | None:intergenic | 50.0% |
| CGATGAGATCCACCAGTTTC+CGG | - | chr2_1:46997867-46997886 | Msa0209360:intron | 50.0% | |
| TTGGAACATCGACCGGAAAC+TGG | + | chr2_1:46997882-46997901 | None:intergenic | 50.0% | |
| AGCTGTTGAACTGGTGGAAC+TGG | - | chr2_1:46997969-46997988 | Msa0209360:intron | 50.0% | |
| TGGAACTGGCTGAGTGTAAG+AGG | - | chr2_1:46997983-46998002 | Msa0209360:intron | 50.0% | |
| !! | TGGTCTTGAGGTTTGGTGTG+CGG | - | chr2_1:46998054-46998073 | Msa0209360:intron | 50.0% |
| !! | GCTGCCTTTGGCTTTGGCTT+TGG | - | chr2_1:46995915-46995934 | Msa0209360:three_prime_UTR | 55.0% |
| GACGACGATGGCGCTAACAA+GGG | + | chr2_1:46996410-46996429 | None:intergenic | 55.0% | |
| GAGGGCGAGTGGTTTCTTCA+CGG | - | chr2_1:46996763-46996782 | Msa0209360:CDS | 55.0% | |
| AGCTTGGATCGATCGTTCCC+GGG | + | chr2_1:46997205-46997224 | None:intergenic | 55.0% | |
| GAATTGCAGCCCCTCCCATA+CGG | + | chr2_1:46997246-46997265 | None:intergenic | 55.0% | |
| TGCGAACGGTGTGGACCAAT+TGG | + | chr2_1:46997309-46997328 | None:intergenic | 55.0% | |
| CCTTGTTAGTGCGAACGGTG+TGG | + | chr2_1:46997318-46997337 | None:intergenic | 55.0% | |
| CCACACCGTTCGCACTAACA+AGG | - | chr2_1:46997315-46997334 | Msa0209360:CDS | 55.0% | |
| TCGGACGTTGGAAGGACAAG+TGG | + | chr2_1:46997472-46997491 | None:intergenic | 55.0% | |
| GCAACTGTTCGGACGTTGGA+AGG | + | chr2_1:46997480-46997499 | None:intergenic | 55.0% | |
| CTTGACGGCTCCATATGCCA+TGG | + | chr2_1:46997652-46997671 | None:intergenic | 55.0% | |
| CTTACACGGAAGCCAAGGGA+AGG | - | chr2_1:46997728-46997747 | Msa0209360:intron | 55.0% | |
| GTGCAACAGCGCAGTATGGA+AGG | - | chr2_1:46997801-46997820 | Msa0209360:intron | 55.0% | |
| GCGCAGTATGGAAGGCTCTA+AGG | - | chr2_1:46997809-46997828 | Msa0209360:intron | 55.0% | |
| GAACATCGACCGGAAACTGG+TGG | + | chr2_1:46997879-46997898 | None:intergenic | 55.0% | |
| GGTGGTAGCTGTTGAACTGG+TGG | - | chr2_1:46997963-46997982 | Msa0209360:intron | 55.0% | |
| CGACGACGATGGCGCTAACA+AGG | + | chr2_1:46996411-46996430 | None:intergenic | 60.0% | |
| TGTTAGCGCCATCGTCGTCG+CGG | - | chr2_1:46996411-46996430 | Msa0209360:CDS | 60.0% | |
| ATGGATCACTCGAGGGCGAG+TGG | - | chr2_1:46996752-46996771 | Msa0209360:CDS | 60.0% | |
| GGCGAGTGGTTTCTTCACGG+AGG | - | chr2_1:46996766-46996785 | Msa0209360:CDS | 60.0% | |
| GTGGGATGGGATGCAGTGCT+GGG | - | chr2_1:46997083-46997102 | Msa0209360:CDS | 60.0% | |
| AAGGACAAGTGGCCCCAACG+TGG | + | chr2_1:46997461-46997480 | None:intergenic | 60.0% | |
| GGAAGGATCCGCGACGACGA+TGG | + | chr2_1:46996422-46996441 | None:intergenic | 65.0% | |
| GGTGGGATGGGATGCAGTGC+TGG | - | chr2_1:46997082-46997101 | Msa0209360:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 46995762 | 46998268 | 46995762 | ID=Msa0209360;Name=Msa0209360 |
| chr2_1 | mRNA | 46995762 | 46998268 | 46995762 | ID=Msa0209360-mRNA-1;Parent=Msa0209360;Name=Msa0209360-mRNA-1;_AED=0.06;_eAED=0.07;_QI=0|0|0.5|1|0|0|2|350|521 |
| chr2_1 | exon | 46995762 | 46997653 | 46995762 | ID=Msa0209360-mRNA-1:exon:13371;Parent=Msa0209360-mRNA-1 |
| chr2_1 | exon | 46998245 | 46998268 | 46998245 | ID=Msa0209360-mRNA-1:exon:13370;Parent=Msa0209360-mRNA-1 |
| chr2_1 | CDS | 46998245 | 46998268 | 46998245 | ID=Msa0209360-mRNA-1:cds;Parent=Msa0209360-mRNA-1 |
| chr2_1 | CDS | 46996112 | 46997653 | 46996112 | ID=Msa0209360-mRNA-1:cds;Parent=Msa0209360-mRNA-1 |
| chr2_1 | three_prime_UTR | 46995762 | 46996111 | 46995762 | ID=Msa0209360-mRNA-1:three_prime_utr;Parent=Msa0209360-mRNA-1 |
| Gene Sequence |
| Protein sequence |
