AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0552090

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0552090 MtrunA17_Chr4g0037011 100.000 148 0 0 1 148 1 148 3.26e-110 309
Msa0552090 MtrunA17_Chr3g0108261 91.892 148 12 0 1 148 1 148 5.03e-103 291
Msa0552090 MtrunA17_Chr7g0275361 92.568 148 11 0 1 148 1 148 7.71e-103 290
Msa0552090 MtrunA17_Chr5g0432831 91.216 148 13 0 1 148 1 148 2.21e-102 289
Msa0552090 MtrunA17_Chr1g0154011 88.514 148 17 0 1 148 1 148 5.46e-100 283
Msa0552090 MtrunA17_Chr8g0369311 87.838 148 18 0 1 148 57 204 3.64e-98 281
Msa0552090 MtrunA17_Chr8g0378601 51.724 145 70 0 2 146 23 167 8.67e-55 169
Msa0552090 MtrunA17_Chr2g0316201 47.586 145 76 0 4 148 8 152 1.89e-46 148
Msa0552090 MtrunA17_Chr2g0316211 47.222 144 76 0 5 148 9 152 2.09e-45 145
Msa0552090 MtrunA17_Chr8g0362321 45.205 146 75 1 2 142 5 150 2.78e-44 142
Msa0552090 MtrunA17_Chr4g0060351 44.521 146 76 1 2 142 5 150 1.72e-43 140
Msa0552090 MtrunA17_Chr3g0131871 48.611 144 72 2 5 146 6 149 2.01e-40 134
Msa0552090 MtrunA17_Chr3g0139901 41.497 147 82 3 5 147 7 153 1.20e-34 118
Msa0552090 MtrunA17_Chr4g0038891 44.715 123 68 0 4 126 35 157 3.78e-34 117
Msa0552090 MtrunA17_Chr1g0199951 47.200 125 65 1 3 126 43 167 5.32e-34 117
Msa0552090 MtrunA17_Chr5g0396451 43.089 123 70 0 4 126 35 157 2.40e-32 113
Msa0552090 MtrunA17_Chr5g0403591 38.971 136 80 2 5 139 33 166 1.47e-28 103
Msa0552090 MtrunA17_Chr4g0053191 34.868 152 92 2 1 145 4 155 1.30e-27 100
Msa0552090 MtrunA17_Chr4g0031181 35.821 134 72 2 15 134 18 151 1.19e-26 98.2
Msa0552090 MtrunA17_Chr8g0348701 35.772 123 77 2 26 146 25 147 1.02e-25 96.3
Msa0552090 MtrunA17_Chr5g0401831 32.895 152 95 2 1 145 4 155 1.09e-25 95.5
Msa0552090 MtrunA17_Chr8g0387131 37.273 110 67 2 39 146 38 147 2.40e-24 92.8
Msa0552090 MtrunA17_Chr2g0328001 34.028 144 81 2 15 144 18 161 4.24e-24 91.7
Msa0552090 MtrunA17_Chr7g0254701 34.532 139 91 0 4 142 13 151 4.64e-24 94.0
Msa0552090 MtrunA17_Chr4g0059291 29.268 123 85 2 26 146 25 147 3.24e-21 84.7
Msa0552090 MtrunA17_Chr8g0372391 39.806 103 60 2 1 102 15 116 2.90e-19 79.0
Msa0552090 MtrunA17_Chr4g0068301 33.613 119 69 4 2 114 11 125 1.71e-17 77.0
Msa0552090 MtrunA17_Chr5g0404931 36.893 103 63 2 1 102 15 116 2.44e-17 73.9
Msa0552090 MtrunA17_Chr8g0376111 35.246 122 69 3 4 115 43 164 1.99e-16 74.3
Msa0552090 MtrunA17_Chr7g0233631 35.246 122 69 3 4 115 38 159 8.30e-16 72.8
Msa0552090 MtrunA17_Chr8g0345331 31.624 117 71 3 4 115 8 120 1.34e-15 71.2
Msa0552090 MtrunA17_Chr7g0233611 35.246 122 69 3 4 115 38 159 1.96e-15 71.6
Msa0552090 MtrunA17_Chr7g0222941 30.894 123 75 3 3 115 90 212 1.14e-14 68.6
Msa0552090 MtrunA17_Chr4g0047301 30.000 150 92 4 4 143 672 818 2.92e-14 68.9
Msa0552090 MtrunA17_Chr2g0282211 27.815 151 96 4 3 143 681 828 2.72e-13 66.2
Msa0552090 MtrunA17_Chr4g0045101 31.967 122 73 3 4 115 37 158 6.00e-13 64.7
Msa0552090 MtrunA17_Chr2g0317631 30.894 123 75 3 3 115 306 428 1.30e-12 63.9
Msa0552090 MtrunA17_Chr1g0186291 28.571 98 56 2 43 139 30 114 2.45e-12 60.5
Msa0552090 MtrunA17_Chr1g0198021 29.268 123 77 3 3 115 137 259 2.63e-12 63.2
Msa0552090 MtrunA17_Chr8g0376201 31.707 123 74 3 3 115 192 314 8.46e-12 61.6
Msa0552090 MtrunA17_Chr1g0211131 30.328 122 75 3 4 115 823 944 4.01e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0552090 AT1G64230.2 91.892 148 12 0 1 148 1 148 1.92e-103 292
Msa0552090 AT1G64230.1 91.892 148 12 0 1 148 1 148 1.92e-103 292
Msa0552090 AT5G53300.2 91.892 148 12 0 1 148 1 148 1.46e-102 290
Msa0552090 AT5G53300.4 91.892 148 12 0 1 148 1 148 1.46e-102 290
Msa0552090 AT5G53300.1 91.892 148 12 0 1 148 1 148 1.46e-102 290
Msa0552090 AT4G27960.1 91.216 148 13 0 1 148 1 148 3.48e-102 289
Msa0552090 AT5G41700.5 90.541 148 14 0 1 148 1 148 7.76e-102 288
Msa0552090 AT5G41700.2 90.541 148 14 0 1 148 1 148 7.76e-102 288
Msa0552090 AT5G41700.1 90.541 148 14 0 1 148 1 148 7.76e-102 288
Msa0552090 AT4G27960.2 91.216 148 13 0 1 148 31 178 2.30e-101 288
Msa0552090 AT3G08690.2 88.514 148 17 0 1 148 1 148 8.50e-100 283
Msa0552090 AT3G08690.1 88.514 148 17 0 1 148 1 148 8.50e-100 283
Msa0552090 AT5G56150.1 88.514 148 17 0 1 148 1 148 4.87e-99 281
Msa0552090 AT5G41700.4 89.262 149 15 1 1 148 1 149 6.21e-99 281
Msa0552090 AT1G64230.3 85.987 157 13 1 1 148 1 157 1.05e-98 281
Msa0552090 AT2G16740.1 85.714 147 21 0 1 147 1 147 3.36e-97 276
Msa0552090 AT1G64230.5 71.053 190 13 1 1 148 1 190 6.21e-94 270
Msa0552090 AT1G64230.4 71.053 190 13 1 1 148 1 190 6.21e-94 270
Msa0552090 AT3G08700.2 75.839 149 35 1 1 148 1 149 5.47e-84 243
Msa0552090 AT3G08700.1 75.839 149 35 1 1 148 1 149 5.47e-84 243
Msa0552090 AT5G41700.3 91.346 104 9 0 1 104 1 104 2.03e-69 206
Msa0552090 AT5G53300.3 89.908 109 9 1 1 107 1 109 2.19e-69 205
Msa0552090 AT5G56150.2 87.379 103 13 0 1 103 1 103 1.06e-65 196
Msa0552090 AT3G13550.1 48.966 145 74 0 2 146 37 181 1.51e-53 167
Msa0552090 AT1G16890.2 48.276 145 75 0 4 148 8 152 5.60e-47 149
Msa0552090 AT1G78870.2 47.586 145 76 0 4 148 8 152 3.70e-46 147
Msa0552090 AT5G62540.1 48.872 133 68 0 2 134 5 137 1.98e-44 143
Msa0552090 AT1G16890.3 46.104 154 74 1 4 148 8 161 2.98e-44 143
Msa0552090 AT2G02760.1 44.521 146 76 1 2 142 5 150 1.69e-43 140
Msa0552090 AT2G02760.2 44.521 146 76 1 2 142 5 150 1.69e-43 140
Msa0552090 AT2G02760.4 44.521 146 76 1 2 142 5 150 1.69e-43 140
Msa0552090 AT2G02760.3 44.521 146 76 1 2 142 5 150 1.69e-43 140
Msa0552090 AT1G14400.1 44.521 146 76 1 2 142 5 150 1.81e-43 140
Msa0552090 AT1G14400.2 44.521 146 76 1 2 142 5 150 1.81e-43 140
Msa0552090 AT3G13550.2 51.754 114 55 0 2 115 37 150 1.94e-43 141
Msa0552090 AT1G36340.2 46.897 145 76 1 2 146 9 152 4.65e-43 140
Msa0552090 AT1G36340.1 46.897 145 76 1 2 146 9 152 4.65e-43 140
Msa0552090 AT1G16890.1 50.420 119 59 0 30 148 1 119 5.99e-40 130
Msa0552090 AT1G78870.4 50.420 119 59 0 30 148 1 119 1.01e-39 130
Msa0552090 AT5G50870.1 47.917 144 73 2 5 146 6 149 2.10e-38 129
Msa0552090 AT1G78870.1 50.000 120 59 1 30 148 1 120 5.99e-38 125
Msa0552090 AT5G50870.2 44.516 155 73 3 5 146 6 160 1.87e-35 122
Msa0552090 AT3G24515.1 43.949 157 75 3 3 146 8 164 2.05e-33 121
Msa0552090 AT5G25760.1 40.136 147 84 3 5 147 7 153 4.42e-33 114
Msa0552090 AT5G25760.2 40.136 147 84 3 5 147 7 153 4.42e-33 114
Msa0552090 AT2G32790.1 51.587 126 57 2 25 148 54 177 9.54e-33 114
Msa0552090 AT1G78870.3 48.571 105 54 0 4 108 8 112 2.85e-32 111
Msa0552090 AT3G20060.1 43.089 123 70 0 4 126 39 161 7.90e-31 109
Msa0552090 AT3G24515.3 45.902 122 62 1 29 146 68 189 1.77e-30 114
Msa0552090 AT1G50490.1 43.902 123 69 0 4 126 38 160 2.34e-30 108
Msa0552090 AT3G20060.2 45.714 105 57 0 22 126 12 116 4.00e-29 103
Msa0552090 AT3G57870.1 35.526 152 91 3 1 145 5 156 1.90e-27 100
Msa0552090 AT4G36800.2 38.235 136 81 2 5 139 34 167 3.23e-27 100
Msa0552090 AT4G36800.1 38.235 136 81 2 5 139 34 167 3.23e-27 100
Msa0552090 AT2G46030.5 35.135 148 93 3 1 146 1 147 3.78e-27 100
Msa0552090 AT2G46030.1 35.135 148 93 3 1 146 1 147 3.78e-27 100
Msa0552090 AT5G05080.2 37.410 139 87 0 4 142 13 151 5.91e-27 101
Msa0552090 AT5G05080.3 37.410 139 87 0 4 142 13 151 5.91e-27 101
Msa0552090 AT5G05080.1 37.410 139 87 0 4 142 13 151 5.91e-27 101
Msa0552090 AT5G05080.4 37.410 139 87 0 4 142 13 151 5.91e-27 101
Msa0552090 AT2G46030.3 35.135 148 93 3 1 146 73 219 1.01e-26 100
Msa0552090 AT2G46030.4 38.211 123 74 2 26 146 28 150 1.03e-26 99.4
Msa0552090 AT2G46030.2 38.211 123 74 2 26 146 28 150 1.03e-26 99.4
Msa0552090 AT5G41340.1 36.585 123 76 2 26 146 25 147 7.01e-26 97.1
Msa0552090 AT1G63800.2 36.585 123 76 2 26 146 10 132 8.79e-26 96.3
Msa0552090 AT1G63800.1 36.585 123 76 2 26 146 25 147 9.53e-26 96.7
Msa0552090 AT3G55380.1 35.075 134 73 2 15 134 19 152 2.64e-25 95.1
Msa0552090 AT5G59300.1 36.296 135 72 2 15 135 18 152 1.09e-24 93.6
Msa0552090 AT3G46460.1 34.028 144 81 2 15 144 18 161 1.63e-24 93.2
Msa0552090 AT2G18600.1 36.496 137 82 4 5 139 35 168 3.13e-24 92.8
Msa0552090 AT2G18600.2 36.496 137 82 4 5 139 35 168 3.13e-24 92.8
Msa0552090 AT5G41340.2 38.462 104 62 2 45 146 9 112 1.02e-22 88.2
Msa0552090 AT3G17000.1 36.134 119 66 4 2 114 12 126 3.23e-19 82.0
Msa0552090 AT1G75440.1 38.835 103 61 2 1 102 15 116 6.27e-19 78.6
Msa0552090 AT3G55380.2 35.965 114 57 3 15 112 19 132 3.40e-18 77.4
Msa0552090 AT1G45050.1 37.864 103 62 2 1 102 15 116 4.93e-18 76.3
Msa0552090 AT5G42990.1 38.835 103 61 2 1 102 15 116 9.98e-18 75.5
Msa0552090 AT1G17280.9 33.333 117 69 3 4 115 8 120 1.03e-16 74.3
Msa0552090 AT1G17280.7 33.333 117 69 3 4 115 8 120 1.03e-16 74.3
Msa0552090 AT1G17280.6 33.333 117 69 3 4 115 8 120 1.03e-16 74.3
Msa0552090 AT1G17280.2 33.333 117 69 3 4 115 8 120 1.03e-16 74.3
Msa0552090 AT1G17280.5 33.333 117 69 3 4 115 8 120 1.03e-16 74.3
Msa0552090 AT1G17280.3 33.333 117 69 3 4 115 8 120 1.03e-16 74.3
Msa0552090 AT1G17280.1 33.333 117 69 3 4 115 8 120 1.03e-16 74.3
Msa0552090 AT1G17280.8 33.333 117 69 3 4 115 8 120 1.03e-16 74.3
Msa0552090 AT4G36410.1 35.185 108 64 3 1 107 15 117 1.34e-16 72.4
Msa0552090 AT5G50430.1 33.333 117 69 3 4 115 8 120 1.35e-16 74.3
Msa0552090 AT5G50430.2 33.333 117 69 3 4 115 8 120 1.35e-16 74.3
Msa0552090 AT3G46460.3 30.631 111 64 1 47 144 9 119 4.35e-16 70.1
Msa0552090 AT3G46460.2 30.631 111 64 1 47 144 9 119 4.35e-16 70.1
Msa0552090 AT1G17280.4 30.894 123 70 3 4 115 8 126 1.96e-15 70.9
Msa0552090 AT3G15355.1 29.139 151 94 4 3 143 334 481 7.24e-12 62.4
Msa0552090 AT1G53025.2 31.148 122 74 3 4 115 274 395 2.06e-11 60.8
Msa0552090 AT1G45050.2 34.831 89 56 2 1 88 15 102 2.09e-11 57.8
Msa0552090 AT1G53025.1 31.148 122 74 3 4 115 274 395 2.15e-11 60.8
Msa0552090 AT1G53023.1 31.148 122 74 3 4 115 60 181 9.35e-11 58.9

Find 106 sgRNAs with CRISPR-Local

Find 175 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGATTTATTGATGTTAATTT+TGG 0.110996 4_1:+48542159 Msa0552090:three_prime_UTR
TAAGACGTGGCCTTGAAATT+TGG 0.149078 4_1:+48541340 Msa0552090:three_prime_UTR
AAATTGATAGTACCATATTT+TGG 0.228289 4_1:+48542198 Msa0552090:three_prime_UTR
GAATAAATTCTACTCTCTTT+TGG 0.250551 4_1:+48541432 Msa0552090:three_prime_UTR
TGAACATCTCTTGGTGTTAT+AGG 0.262418 4_1:-48541802 None:intergenic
CAGGTTGCAGGCATATTTAT+TGG 0.271991 4_1:-48539936 None:intergenic
CGCAATAATTTAGCCCTTCT+CGG 0.306832 4_1:-48541488 None:intergenic
AAGACGTGGCCTTGAAATTT+GGG 0.312393 4_1:+48541341 Msa0552090:three_prime_UTR
AAGTGCTTCTCTTCTCAGTA+TGG 0.312744 4_1:-48539993 None:intergenic
TACATAACATTACCAAAATA+TGG 0.325628 4_1:-48542210 None:intergenic
ATAGGAATATGTGGCCTAAT+TGG 0.341091 4_1:-48541784 None:intergenic
CATTGGCAAGCAACCATCAT+TGG 0.350944 4_1:+48540193 Msa0552090:CDS
CACATAACATTTGCAAAATT+AGG 0.365332 4_1:-48542259 None:intergenic
GAGAATAGTTAAGGAGCTTA+AGG 0.366328 4_1:+48540031 Msa0552090:CDS
AGATAAGATTACAAGAATAA+AGG 0.373866 4_1:-48539802 None:intergenic
AGAAGAGAAGCACTTGAATA+TGG 0.376884 4_1:+48540001 Msa0552090:exon
GGAGGTAGTCTTACAGTTGA+TGG 0.397335 4_1:-48541763 None:intergenic
CTGTAAGACTACCTCCAATT+AGG 0.398308 4_1:+48541770 Msa0552090:three_prime_UTR
GGAGGTTTGAAGGGATAATC+AGG 0.402929 4_1:-48540271 None:intergenic
AAATTATTGCGTACTTCCTC+AGG 0.406096 4_1:+48541500 Msa0552090:three_prime_UTR
ACAAGAGGGTCATCAGGATT+TGG 0.424690 4_1:-48541181 None:intergenic
ATCCGTTAGCAGAGAACATA+TGG 0.433316 4_1:-48541158 None:intergenic
CCAGCATAGGGACTATCATT+TGG 0.439200 4_1:-48540217 None:intergenic
CAAGAAATAAAACAGGTTGC+AGG 0.442953 4_1:-48539948 None:intergenic
TCAGCACTGCCCAAATTTCA+AGG 0.443228 4_1:-48541350 None:intergenic
AAGCTCCTTAACTATTCTCT+TGG 0.446675 4_1:-48540027 None:intergenic
CTTCTCTTCTCAGTATGGAT+TGG 0.449845 4_1:-48539988 None:intergenic
GTATACCTTGGGAGGTTTGA+AGG 0.451790 4_1:-48540281 None:intergenic
AGCATATATTCCTCAAGAAA+AGG 0.462112 4_1:-48539826 None:intergenic
ATATTTATTGGAGCATATAG+TGG 0.466226 4_1:-48539924 None:intergenic
TGCTTTAGTTAGGTGTCAGA+AGG 0.466931 4_1:-48541538 None:intergenic
ACCTTGGATATTGTGAGAGC+AGG 0.470819 4_1:-48541031 None:intergenic
TTGGAGCATATAGTGGGTGT+TGG 0.475454 4_1:-48539917 None:intergenic
TCAGGCACAAGAGGGTCATC+AGG 0.475511 4_1:-48541187 None:intergenic
ACTATCATTTGGACCAATGA+TGG 0.481239 4_1:-48540206 None:intergenic
ACTCTTGTTTAGTGTTTCGT+TGG 0.488391 4_1:+48541987 Msa0552090:three_prime_UTR
TTGCACATATGAGCAACTTC+AGG 0.491907 4_1:-48541205 None:intergenic
TCGGTGAGGACATGTTTCAT+TGG 0.492631 4_1:+48540176 Msa0552090:CDS
CTCCATATGTTCTCTGCTAA+CGG 0.494453 4_1:+48541156 Msa0552090:CDS
GGCAAAAGATGAACATCTCT+TGG 0.496355 4_1:-48541811 None:intergenic
TTGCCATTGCTGTTAATGTT+GGG 0.496480 4_1:-48540974 None:intergenic
CCTGCACTGCATGAGGTTGG+TGG 0.496861 4_1:-48540068 None:intergenic
CCACCAACCTCATGCAGTGC+AGG 0.500851 4_1:+48540068 Msa0552090:CDS
CTGGACTCAGAAATTTGCTA+TGG 0.506602 4_1:+48541264 Msa0552090:CDS
TGAAACATGTCCTCACCGAC+TGG 0.508985 4_1:-48540172 None:intergenic
CAAACTACAAGAAATAAAAC+AGG 0.510875 4_1:-48539955 None:intergenic
AAGGAAAACACCGCCAGCAT+AGG 0.514098 4_1:-48540230 None:intergenic
ATTCTGATTGCCATTGACTA+CGG 0.515787 4_1:+48541613 Msa0552090:three_prime_UTR
ACTTAAGTTCTGCACACTTG+TGG 0.517870 4_1:+48542016 Msa0552090:three_prime_UTR
ATTGCCATTGCTGTTAATGT+TGG 0.518283 4_1:-48540975 None:intergenic
AATGTACATCCTCTGCAAAC+CGG 0.521248 4_1:+48541873 Msa0552090:three_prime_UTR
ATGAGTCCACTGCTAGAAGC+TGG 0.523736 4_1:+48541245 Msa0552090:CDS
ACACTTGTGGAAGTTACTCA+TGG 0.526602 4_1:+48542029 Msa0552090:three_prime_UTR
TTACCTGCACTGCATGAGGT+TGG 0.530132 4_1:-48540071 None:intergenic
GGCGTCCAAGAGAATAGTTA+AGG 0.531160 4_1:+48540022 Msa0552090:CDS
TCGTTGTCAACCGTAGTCAA+TGG 0.538405 4_1:-48541623 None:intergenic
TATACCTTGGGAGGTTTGAA+GGG 0.541616 4_1:-48540280 None:intergenic
GGAATATGTGGCCTAATTGG+AGG 0.542331 4_1:-48541781 None:intergenic
TATTTATTGGAGCATATAGT+GGG 0.545894 4_1:-48539923 None:intergenic
CGAATGGTGGCGACAAAGGA+AGG 0.546069 4_1:+48541643 Msa0552090:three_prime_UTR
AGGAAAACACCGCCAGCATA+GGG 0.547017 4_1:-48540229 None:intergenic
CTTGGTGTTATAGGAATATG+TGG 0.547187 4_1:-48541793 None:intergenic
TATGCTGTACCCACCTCCAT+TGG 0.547984 4_1:+48539843 Msa0552090:five_prime_UTR
AATTATATCTTAGTTGAAAG+CGG 0.548041 4_1:+48539748 Msa0552090:five_prime_UTR
CTCTTTACCTGCACTGCATG+AGG 0.548184 4_1:-48540075 None:intergenic
CCAAATGATAGTCCCTATGC+TGG 0.551124 4_1:+48540217 Msa0552090:CDS
AAACACGAAACACATATATG+TGG 0.561138 4_1:-48541945 None:intergenic
CACTTGTGGAAGTTACTCAT+GGG 0.563666 4_1:+48542030 Msa0552090:three_prime_UTR
TGACTACGGTTGACAACGAA+TGG 0.565181 4_1:+48541627 Msa0552090:three_prime_UTR
AGTCACACACTGAAATCAAG+TGG 0.578300 4_1:+48542345 Msa0552090:three_prime_UTR
GCATATTTGAAACACACTTG+TGG 0.579730 4_1:+48542125 Msa0552090:three_prime_UTR
TAATCCAGAACTAAAACGAC+CGG 0.582112 4_1:-48541892 None:intergenic
ACAACGAATGGTGGCGACAA+AGG 0.582231 4_1:+48541639 Msa0552090:three_prime_UTR
CTGAGTCCAGCTTCTAGCAG+TGG 0.582567 4_1:-48541251 None:intergenic
CTACGGTTGACAACGAATGG+TGG 0.589038 4_1:+48541630 Msa0552090:three_prime_UTR
ACTTTGGTGTATACCTTGGG+AGG 0.590340 4_1:-48540289 None:intergenic
TTATCCCTTCAAACCTCCCA+AGG 0.591046 4_1:+48540276 Msa0552090:CDS
ATAATCAGGAGGAAAATGAA+TGG 0.593685 4_1:-48540257 None:intergenic
CATTGCTGTTAATGTTGGGA+TGG 0.595351 4_1:-48540970 None:intergenic
TGGACTCAGAAATTTGCTAT+GGG 0.595611 4_1:+48541265 Msa0552090:CDS
GGTGGTGATAGCGGTGAACA+TGG 0.597209 4_1:-48541742 None:intergenic
TCCTGCTCTCACAATATCCA+AGG 0.599635 4_1:+48541030 Msa0552090:CDS
TGAGCAACTTCAGGCACAAG+AGG 0.601737 4_1:-48541196 None:intergenic
CATCCCAACATTAACAGCAA+TGG 0.604832 4_1:+48540971 Msa0552090:CDS
GCTTCGAATTTGTTGACCTG+AGG 0.617910 4_1:-48541516 None:intergenic
AGTGTGCAGAACTTAAGTCT+AGG 0.623773 4_1:-48542011 None:intergenic
TAGACATACTCAAAGAACAA+TGG 0.629353 4_1:+48541005 Msa0552090:CDS
GCAGGTTGCATTCAGGACCA+AGG 0.630304 4_1:+48540943 Msa0552090:intron
TGTTTGAATTGTATAAGACG+TGG 0.631708 4_1:+48541327 Msa0552090:three_prime_UTR
TGATGAGTTTCAGGTCCAGT+CGG 0.644910 4_1:+48540157 Msa0552090:intron
AATGATAGTCCCTATGCTGG+CGG 0.653459 4_1:+48540220 Msa0552090:CDS
GAGCAACTTCAGGCACAAGA+GGG 0.655538 4_1:-48541195 None:intergenic
AAAGTATTGAAGGAGACAAG+AGG 0.657206 4_1:-48541302 None:intergenic
GAGGAAAATGAATGGTGACA+AGG 0.659276 4_1:-48540249 None:intergenic
AAGCATAAAGAATAAGACCA+TGG 0.662509 4_1:+48542302 Msa0552090:three_prime_UTR
CTAAAACGACCGGTTTGCAG+AGG 0.663742 4_1:-48541882 None:intergenic
GTTGGAGAAGAGACAATGAA+AGG 0.664356 4_1:-48539899 None:intergenic
AGTTTCAGGTCCAGTCGGTG+AGG 0.671300 4_1:+48540162 Msa0552090:intron
AATGTTGGGATGGAATACCT+TGG 0.674072 4_1:-48540960 None:intergenic
ACAGTTGATGGTGGTGATAG+CGG 0.674465 4_1:-48541751 None:intergenic
CTCATCGAATTACACAATGG+AGG 0.687925 4_1:+48541921 Msa0552090:three_prime_UTR
CTACTCATCGAATTACACAA+TGG 0.702374 4_1:+48541918 Msa0552090:three_prime_UTR
ATGTAGTAGACTTAATACCA+TGG 0.705147 4_1:-48542319 None:intergenic
GGTAGTCTTACAGTTGATGG+TGG 0.708574 4_1:-48541760 None:intergenic
GGTTTGAAGGGATAATCAGG+AGG 0.711960 4_1:-48540268 None:intergenic
ATGGTGGCGACAAAGGAAGG+TGG 0.712262 4_1:+48541646 Msa0552090:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAACCTATTATA+TGG - chr4_1:48540728-48540747 None:intergenic 10.0%
!!! TATGATTTGTTATGTATAAT+AGG + chr4_1:48540454-48540473 Msa0552090:intron 15.0%
!!! ATGATTTGTTATGTATAATA+GGG + chr4_1:48540455-48540474 Msa0552090:intron 15.0%
!!! GCTTTTTTATTTTATGAAAA+AGG + chr4_1:48540678-48540697 Msa0552090:intron 15.0%
!!! AATATCAAGATTTTAAATCT+TGG - chr4_1:48540888-48540907 None:intergenic 15.0%
!! TTGATATTCTATATAATTGA+TGG + chr4_1:48540900-48540919 Msa0552090:intron 15.0%
!!! TTCAGCATTTTTATATAAAA+CGG - chr4_1:48541101-48541120 None:intergenic 15.0%
!!! TCTTGTTTTTTTTTTTTTTG+AGG - chr4_1:48541835-48541854 None:intergenic 15.0%
!!! AGATTTATTGATGTTAATTT+TGG + chr4_1:48542159-48542178 Msa0552090:three_prime_UTR 15.0%
!! AATTATATCTTAGTTGAAAG+CGG + chr4_1:48539748-48539767 Msa0552090:five_prime_UTR 20.0%
!! AGATAAGATTACAAGAATAA+AGG - chr4_1:48539805-48539824 None:intergenic 20.0%
!! AAGACAAACATATCTATTTA+AGG - chr4_1:48540419-48540438 None:intergenic 20.0%
!!! AGTATAAAAAATGATTTTGC+AGG + chr4_1:48540925-48540944 Msa0552090:intron 20.0%
!! TTTAAAAATCATGATGATAC+AGG + chr4_1:48541126-48541145 Msa0552090:intron 20.0%
!!! TTCAAACAAAAAAGTATTGA+AGG - chr4_1:48541315-48541334 None:intergenic 20.0%
!!! TGTTAATTTTGGATCTATTT+TGG + chr4_1:48542170-48542189 Msa0552090:three_prime_UTR 20.0%
!!! GTTAATTTTGGATCTATTTT+GGG + chr4_1:48542171-48542190 Msa0552090:three_prime_UTR 20.0%
!!! AAATTGATAGTACCATATTT+TGG + chr4_1:48542198-48542217 Msa0552090:three_prime_UTR 20.0%
!! TACATAACATTACCAAAATA+TGG - chr4_1:48542213-48542232 None:intergenic 20.0%
! GGCAAAAATACAAAGTAATA+TGG + chr4_1:48539769-48539788 Msa0552090:five_prime_UTR 25.0%
!!! CATTTGTTGTTTTTTACCAA+TGG - chr4_1:48539862-48539881 None:intergenic 25.0%
! CATTGGTAAAAAACAACAAA+TGG + chr4_1:48539860-48539879 Msa0552090:five_prime_UTR 25.0%
! TATTTATTGGAGCATATAGT+GGG - chr4_1:48539926-48539945 None:intergenic 25.0%
! ATATTTATTGGAGCATATAG+TGG - chr4_1:48539927-48539946 None:intergenic 25.0%
! CAAACTACAAGAAATAAAAC+AGG - chr4_1:48539958-48539977 None:intergenic 25.0%
! CTGGAATAAATAAAGAAAAC+AGG - chr4_1:48540335-48540354 None:intergenic 25.0%
! ATTAATAAGTGACTCTAGAT+AGG + chr4_1:48540364-48540383 Msa0552090:intron 25.0%
! TGTTATGTATAATAGGGATT+TGG + chr4_1:48540461-48540480 Msa0552090:intron 25.0%
! GTTATGTATAATAGGGATTT+GGG + chr4_1:48540462-48540481 Msa0552090:intron 25.0%
! AAAAAACCTATTATATGGAC+TGG - chr4_1:48540723-48540742 None:intergenic 25.0%
! ATAAAACGGATAGAAACTAA+TGG - chr4_1:48541087-48541106 None:intergenic 25.0%
!! GAATAAATTCTACTCTCTTT+TGG + chr4_1:48541432-48541451 Msa0552090:three_prime_UTR 25.0%
! TATTAAAAATGTACCGAGAA+GGG + chr4_1:48541475-48541494 Msa0552090:three_prime_UTR 25.0%
! AGCACTAAAAACATGTATTT+GGG - chr4_1:48541703-48541722 None:intergenic 25.0%
! TAGCACTAAAAACATGTATT+TGG - chr4_1:48541704-48541723 None:intergenic 25.0%
!! TTTACTGTTTTGTGTTTTGT+TGG + chr4_1:48542082-48542101 Msa0552090:three_prime_UTR 25.0%
! CACATAACATTTGCAAAATT+AGG - chr4_1:48542262-48542281 None:intergenic 25.0%
! ATCTTATCTTCCTTTTCTTG+AGG + chr4_1:48539816-48539835 Msa0552090:five_prime_UTR 30.0%
AGCATATATTCCTCAAGAAA+AGG - chr4_1:48539829-48539848 None:intergenic 30.0%
!!! TTGTTGTTTTTTACCAATGG+AGG - chr4_1:48539859-48539878 None:intergenic 30.0%
GTTTGAATGAAACTTTGAAC+TGG + chr4_1:48540097-48540116 Msa0552090:intron 30.0%
!! TGTTTGTTATGATGAGTTTC+AGG + chr4_1:48540148-48540167 Msa0552090:intron 30.0%
ATAATCAGGAGGAAAATGAA+TGG - chr4_1:48540260-48540279 None:intergenic 30.0%
!!! ACAGTGTTTTAAAAGCACTT+TGG - chr4_1:48540308-48540327 None:intergenic 30.0%
ACTTATTAATAAGATGCAGC+TGG - chr4_1:48540354-48540373 None:intergenic 30.0%
! TTTAAGGCTATCACACAAAA+AGG - chr4_1:48540403-48540422 None:intergenic 30.0%
ACTGTCCAATCTCAAATTAA+CGG + chr4_1:48540587-48540606 Msa0552090:intron 30.0%
AAAAAGGTCTGTTGTGATTT+AGG + chr4_1:48540756-48540775 Msa0552090:intron 30.0%
TAGACATACTCAAAGAACAA+TGG + chr4_1:48541005-48541024 Msa0552090:CDS 30.0%
TGTTTGAATTGTATAAGACG+TGG + chr4_1:48541327-48541346 Msa0552090:three_prime_UTR 30.0%
! CTTCTCGGTACATTTTTAAT+AGG - chr4_1:48541476-48541495 None:intergenic 30.0%
CTATTAAAAATGTACCGAGA+AGG + chr4_1:48541474-48541493 Msa0552090:three_prime_UTR 30.0%
! GTTTGTCTTTTGCTTTAGTT+AGG - chr4_1:48541551-48541570 None:intergenic 30.0%
! GAAAATGAAGCGAGATTTTA+GGG - chr4_1:48541593-48541612 None:intergenic 30.0%
! TGAAAATGAAGCGAGATTTT+AGG - chr4_1:48541594-48541613 None:intergenic 30.0%
ACTAAAAACATGTATTTGGG+AGG - chr4_1:48541700-48541719 None:intergenic 30.0%
AAACACGAAACACATATATG+TGG - chr4_1:48541948-48541967 None:intergenic 30.0%
! TATATGTGTTTCGTGTTTTC+TGG + chr4_1:48541950-48541969 Msa0552090:three_prime_UTR 30.0%
AAGCATAAAGAATAAGACCA+TGG + chr4_1:48542302-48542321 Msa0552090:three_prime_UTR 30.0%
ATGTAGTAGACTTAATACCA+TGG - chr4_1:48542322-48542341 None:intergenic 30.0%
!!! TGTTTTTTACCAATGGAGGT+GGG - chr4_1:48539855-48539874 None:intergenic 35.0%
!!! TTGTTTTTTACCAATGGAGG+TGG - chr4_1:48539856-48539875 None:intergenic 35.0%
CAAGAAATAAAACAGGTTGC+AGG - chr4_1:48539951-48539970 None:intergenic 35.0%
!! AGAAGAGAAGCACTTGAATA+TGG + chr4_1:48540001-48540020 Msa0552090:exon 35.0%
AAGCTCCTTAACTATTCTCT+TGG - chr4_1:48540030-48540049 None:intergenic 35.0%
GAGAATAGTTAAGGAGCTTA+AGG + chr4_1:48540031-48540050 Msa0552090:CDS 35.0%
ACTATCATTTGGACCAATGA+TGG - chr4_1:48540209-48540228 None:intergenic 35.0%
CACCATCTAATCTCACAATA+CGG + chr4_1:48540523-48540542 Msa0552090:intron 35.0%
!!! TTTTTTACTGCAGTAGATCC+TGG + chr4_1:48540644-48540663 Msa0552090:intron 35.0%
AAAAAGCTGTTATACAGACC+AGG - chr4_1:48540665-48540684 None:intergenic 35.0%
!! AAGGTTTGCTGTTGCAATTT+AGG + chr4_1:48540697-48540716 Msa0552090:intron 35.0%
TTTAGGCCAGTCCATATAAT+AGG + chr4_1:48540714-48540733 Msa0552090:intron 35.0%
AGTTACGGTTACAGATACAT+CGG - chr4_1:48540799-48540818 None:intergenic 35.0%
CTTGATATTACAGATAGCTG+CGG - chr4_1:48540856-48540875 None:intergenic 35.0%
! TTGCCATTGCTGTTAATGTT+GGG - chr4_1:48540977-48540996 None:intergenic 35.0%
! ATTGCCATTGCTGTTAATGT+TGG - chr4_1:48540978-48540997 None:intergenic 35.0%
!! TGGACTCAGAAATTTGCTAT+GGG + chr4_1:48541265-48541284 Msa0552090:CDS 35.0%
!! AAAGTATTGAAGGAGACAAG+AGG - chr4_1:48541305-48541324 None:intergenic 35.0%
AAATTATTGCGTACTTCCTC+AGG + chr4_1:48541500-48541519 Msa0552090:three_prime_UTR 35.0%
! ATTCTGATTGCCATTGACTA+CGG + chr4_1:48541613-48541632 Msa0552090:three_prime_UTR 35.0%
ATAGGAATATGTGGCCTAAT+TGG - chr4_1:48541787-48541806 None:intergenic 35.0%
!! CTTGGTGTTATAGGAATATG+TGG - chr4_1:48541796-48541815 None:intergenic 35.0%
!! TGAACATCTCTTGGTGTTAT+AGG - chr4_1:48541805-48541824 None:intergenic 35.0%
TAATCCAGAACTAAAACGAC+CGG - chr4_1:48541895-48541914 None:intergenic 35.0%
CTACTCATCGAATTACACAA+TGG + chr4_1:48541918-48541937 Msa0552090:three_prime_UTR 35.0%
! ACTCTTGTTTAGTGTTTCGT+TGG + chr4_1:48541987-48542006 Msa0552090:three_prime_UTR 35.0%
! GCATATTTGAAACACACTTG+TGG + chr4_1:48542125-48542144 Msa0552090:three_prime_UTR 35.0%
GTTGGAGAAGAGACAATGAA+AGG - chr4_1:48539902-48539921 None:intergenic 40.0%
CAGGTTGCAGGCATATTTAT+TGG - chr4_1:48539939-48539958 None:intergenic 40.0%
CTTCTCTTCTCAGTATGGAT+TGG - chr4_1:48539991-48540010 None:intergenic 40.0%
AAGTGCTTCTCTTCTCAGTA+TGG - chr4_1:48539996-48540015 None:intergenic 40.0%
GAGGAAAATGAATGGTGACA+AGG - chr4_1:48540252-48540271 None:intergenic 40.0%
TATACCTTGGGAGGTTTGAA+GGG - chr4_1:48540283-48540302 None:intergenic 40.0%
! AGCACTTTGGTGTATACCTT+GGG - chr4_1:48540295-48540314 None:intergenic 40.0%
! AAGCACTTTGGTGTATACCT+TGG - chr4_1:48540296-48540315 None:intergenic 40.0%
GTATAATAGGGATTTGGGCT+TGG + chr4_1:48540467-48540486 Msa0552090:intron 40.0%
CGTATTGTGAGATTAGATGG+TGG - chr4_1:48540525-48540544 None:intergenic 40.0%
GACCGTATTGTGAGATTAGA+TGG - chr4_1:48540528-48540547 None:intergenic 40.0%
! CTCAGCCGTTAATTTGAGAT+TGG - chr4_1:48540595-48540614 None:intergenic 40.0%
CATCGGAAATCTTGATGTCA+AGG - chr4_1:48540782-48540801 None:intergenic 40.0%
! TGATTTTGCAGGTTGCATTC+AGG + chr4_1:48540936-48540955 Msa0552090:intron 40.0%
AATGTTGGGATGGAATACCT+TGG - chr4_1:48540963-48540982 None:intergenic 40.0%
! CATTGCTGTTAATGTTGGGA+TGG - chr4_1:48540973-48540992 None:intergenic 40.0%
CATCCCAACATTAACAGCAA+TGG + chr4_1:48540971-48540990 Msa0552090:CDS 40.0%
GGTTCACAATAACATGACCT+TGG - chr4_1:48541050-48541069 None:intergenic 40.0%
CTCCATATGTTCTCTGCTAA+CGG + chr4_1:48541156-48541175 Msa0552090:CDS 40.0%
ATCCGTTAGCAGAGAACATA+TGG - chr4_1:48541161-48541180 None:intergenic 40.0%
TTGCACATATGAGCAACTTC+AGG - chr4_1:48541208-48541227 None:intergenic 40.0%
!! CTGGACTCAGAAATTTGCTA+TGG + chr4_1:48541264-48541283 Msa0552090:CDS 40.0%
! TAAGACGTGGCCTTGAAATT+TGG + chr4_1:48541340-48541359 Msa0552090:three_prime_UTR 40.0%
! AAGACGTGGCCTTGAAATTT+GGG + chr4_1:48541341-48541360 Msa0552090:three_prime_UTR 40.0%
CGCAATAATTTAGCCCTTCT+CGG - chr4_1:48541491-48541510 None:intergenic 40.0%
TGCTTTAGTTAGGTGTCAGA+AGG - chr4_1:48541541-48541560 None:intergenic 40.0%
CTGTAAGACTACCTCCAATT+AGG + chr4_1:48541770-48541789 Msa0552090:three_prime_UTR 40.0%
GGCAAAAGATGAACATCTCT+TGG - chr4_1:48541814-48541833 None:intergenic 40.0%
AATGTACATCCTCTGCAAAC+CGG + chr4_1:48541873-48541892 Msa0552090:three_prime_UTR 40.0%
CTCATCGAATTACACAATGG+AGG + chr4_1:48541921-48541940 Msa0552090:three_prime_UTR 40.0%
AGTGTGCAGAACTTAAGTCT+AGG - chr4_1:48542014-48542033 None:intergenic 40.0%
ACTTAAGTTCTGCACACTTG+TGG + chr4_1:48542016-48542035 Msa0552090:three_prime_UTR 40.0%
ACACTTGTGGAAGTTACTCA+TGG + chr4_1:48542029-48542048 Msa0552090:three_prime_UTR 40.0%
CACTTGTGGAAGTTACTCAT+GGG + chr4_1:48542030-48542049 Msa0552090:three_prime_UTR 40.0%
AGTCACACACTGAAATCAAG+TGG + chr4_1:48542345-48542364 Msa0552090:three_prime_UTR 40.0%
!! TTGGAGCATATAGTGGGTGT+TGG - chr4_1:48539920-48539939 None:intergenic 45.0%
GGCGTCCAAGAGAATAGTTA+AGG + chr4_1:48540022-48540041 Msa0552090:CDS 45.0%
! TGATGAGTTTCAGGTCCAGT+CGG + chr4_1:48540157-48540176 Msa0552090:intron 45.0%
TCGGTGAGGACATGTTTCAT+TGG + chr4_1:48540176-48540195 Msa0552090:CDS 45.0%
CATTGGCAAGCAACCATCAT+TGG + chr4_1:48540193-48540212 Msa0552090:CDS 45.0%
CCAGCATAGGGACTATCATT+TGG - chr4_1:48540220-48540239 None:intergenic 45.0%
CCAAATGATAGTCCCTATGC+TGG + chr4_1:48540217-48540236 Msa0552090:CDS 45.0%
AATGATAGTCCCTATGCTGG+CGG + chr4_1:48540220-48540239 Msa0552090:CDS 45.0%
GGTTTGAAGGGATAATCAGG+AGG - chr4_1:48540271-48540290 None:intergenic 45.0%
GGAGGTTTGAAGGGATAATC+AGG - chr4_1:48540274-48540293 None:intergenic 45.0%
TTATCCCTTCAAACCTCCCA+AGG + chr4_1:48540276-48540295 Msa0552090:CDS 45.0%
GTATACCTTGGGAGGTTTGA+AGG - chr4_1:48540284-48540303 None:intergenic 45.0%
! ACTTTGGTGTATACCTTGGG+AGG - chr4_1:48540292-48540311 None:intergenic 45.0%
GTGCAATAACTGTGTCACAC+AGG + chr4_1:48540489-48540508 Msa0552090:intron 45.0%
CTGTAACCGTAACTTGACAG+CGG + chr4_1:48540805-48540824 Msa0552090:intron 45.0%
TCCTGCTCTCACAATATCCA+AGG + chr4_1:48541030-48541049 Msa0552090:CDS 45.0%
ACCTTGGATATTGTGAGAGC+AGG - chr4_1:48541034-48541053 None:intergenic 45.0%
AGAAACTAATGGCGTCAACG+AGG - chr4_1:48541076-48541095 None:intergenic 45.0%
ACAAGAGGGTCATCAGGATT+TGG - chr4_1:48541184-48541203 None:intergenic 45.0%
TCAGCACTGCCCAAATTTCA+AGG - chr4_1:48541353-48541372 None:intergenic 45.0%
!! GCTTCGAATTTGTTGACCTG+AGG - chr4_1:48541519-48541538 None:intergenic 45.0%
TCGTTGTCAACCGTAGTCAA+TGG - chr4_1:48541626-48541645 None:intergenic 45.0%
TGACTACGGTTGACAACGAA+TGG + chr4_1:48541627-48541646 Msa0552090:three_prime_UTR 45.0%
!! ACAGTTGATGGTGGTGATAG+CGG - chr4_1:48541754-48541773 None:intergenic 45.0%
!! GGTAGTCTTACAGTTGATGG+TGG - chr4_1:48541763-48541782 None:intergenic 45.0%
! GGAGGTAGTCTTACAGTTGA+TGG - chr4_1:48541766-48541785 None:intergenic 45.0%
GGAATATGTGGCCTAATTGG+AGG - chr4_1:48541784-48541803 None:intergenic 45.0%
!!! CAAACCGGTCGTTTTAGTTC+TGG + chr4_1:48541888-48541907 Msa0552090:three_prime_UTR 45.0%
!!! TTTTTTTTTTTTTAAGAAAA+AGG + chr4_1:48540740-48540759 Msa0552090:intron 5.0%
TATGCTGTACCCACCTCCAT+TGG + chr4_1:48539843-48539862 Msa0552090:five_prime_UTR 50.0%
TTACCTGCACTGCATGAGGT+TGG - chr4_1:48540074-48540093 None:intergenic 50.0%
CTCTTTACCTGCACTGCATG+AGG - chr4_1:48540078-48540097 None:intergenic 50.0%
TGAAACATGTCCTCACCGAC+TGG - chr4_1:48540175-48540194 None:intergenic 50.0%
AGGAAAACACCGCCAGCATA+GGG - chr4_1:48540232-48540251 None:intergenic 50.0%
AAGGAAAACACCGCCAGCAT+AGG - chr4_1:48540233-48540252 None:intergenic 50.0%
CCTCAACCGCTGTCAAGTTA+CGG - chr4_1:48540814-48540833 None:intergenic 50.0%
CTAATGGCGTCAACGAGGAA+TGG - chr4_1:48541071-48541090 None:intergenic 50.0%
GAGCAACTTCAGGCACAAGA+GGG - chr4_1:48541198-48541217 None:intergenic 50.0%
TGAGCAACTTCAGGCACAAG+AGG - chr4_1:48541199-48541218 None:intergenic 50.0%
ATGAGTCCACTGCTAGAAGC+TGG + chr4_1:48541245-48541264 Msa0552090:CDS 50.0%
CTACGGTTGACAACGAATGG+TGG + chr4_1:48541630-48541649 Msa0552090:three_prime_UTR 50.0%
! ACAACGAATGGTGGCGACAA+AGG + chr4_1:48541639-48541658 Msa0552090:three_prime_UTR 50.0%
!! CTAAAACGACCGGTTTGCAG+AGG - chr4_1:48541885-48541904 None:intergenic 50.0%
! AGTTTCAGGTCCAGTCGGTG+AGG + chr4_1:48540162-48540181 Msa0552090:intron 55.0%
CCGTAACTTGACAGCGGTTG+AGG + chr4_1:48540811-48540830 Msa0552090:intron 55.0%
GCAGGTTGCATTCAGGACCA+AGG + chr4_1:48540943-48540962 Msa0552090:intron 55.0%
TCAGGCACAAGAGGGTCATC+AGG - chr4_1:48541190-48541209 None:intergenic 55.0%
CTGAGTCCAGCTTCTAGCAG+TGG - chr4_1:48541254-48541273 None:intergenic 55.0%
! CGAATGGTGGCGACAAAGGA+AGG + chr4_1:48541643-48541662 Msa0552090:three_prime_UTR 55.0%
! ATGGTGGCGACAAAGGAAGG+TGG + chr4_1:48541646-48541665 Msa0552090:three_prime_UTR 55.0%
!! GGTGGTGATAGCGGTGAACA+TGG - chr4_1:48541745-48541764 None:intergenic 55.0%
CCTGCACTGCATGAGGTTGG+TGG - chr4_1:48540071-48540090 None:intergenic 60.0%
CCACCAACCTCATGCAGTGC+AGG + chr4_1:48540068-48540087 Msa0552090:CDS 60.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 48539726 48542385 48539726 ID=Msa0552090;Name=Msa0552090
chr4_1 mRNA 48539726 48542385 48539726 ID=Msa0552090-mRNA-1;Parent=Msa0552090;Name=Msa0552090-mRNA-1;_AED=0.08;_eAED=0.08;_QI=294|1|1|1|1|1|4|1094|148
chr4_1 exon 48539726 48540089 48539726 ID=Msa0552090-mRNA-1:exon:13262;Parent=Msa0552090-mRNA-1
chr4_1 exon 48540170 48540297 48540170 ID=Msa0552090-mRNA-1:exon:13263;Parent=Msa0552090-mRNA-1
chr4_1 exon 48540947 48541051 48540947 ID=Msa0552090-mRNA-1:exon:13264;Parent=Msa0552090-mRNA-1
chr4_1 exon 48541148 48542385 48541148 ID=Msa0552090-mRNA-1:exon:13265;Parent=Msa0552090-mRNA-1
chr4_1 five_prime_UTR 48539726 48540019 48539726 ID=Msa0552090-mRNA-1:five_prime_utr;Parent=Msa0552090-mRNA-1
chr4_1 CDS 48540020 48540089 48540020 ID=Msa0552090-mRNA-1:cds;Parent=Msa0552090-mRNA-1
chr4_1 CDS 48540170 48540297 48540170 ID=Msa0552090-mRNA-1:cds;Parent=Msa0552090-mRNA-1
chr4_1 CDS 48540947 48541051 48540947 ID=Msa0552090-mRNA-1:cds;Parent=Msa0552090-mRNA-1
chr4_1 CDS 48541148 48541291 48541148 ID=Msa0552090-mRNA-1:cds;Parent=Msa0552090-mRNA-1
chr4_1 three_prime_UTR 48541292 48542385 48541292 ID=Msa0552090-mRNA-1:three_prime_utr;Parent=Msa0552090-mRNA-1
Gene Sequence

>Msa0552090

ATGGCGTCCAAGAGAATAGTTAAGGAGCTTAAGGACTTGCAGAGAGATCCACCAACCTCATGCAGTGCAGGTCCAGTCGGTGAGGACATGTTTCATTGGCAAGCAACCATCATTGGTCCAAATGATAGTCCCTATGCTGGCGGTGTTTTCCTTGTCACCATTCATTTTCCTCCTGATTATCCCTTCAAACCTCCCAAGGTTGCATTCAGGACCAAGGTATTCCATCCCAACATTAACAGCAATGGCAATATTTGCTTAGACATACTCAAAGAACAATGGAGTCCTGCTCTCACAATATCCAAGGTACTGCTCTCCATATGTTCTCTGCTAACGGATCCAAATCCTGATGACCCTCTTGTGCCTGAAGTTGCTCATATGTGCAAGACAGACAGAGTCAAGTATGAGTCCACTGCTAGAAGCTGGACTCAGAAATTTGCTATGGGCTAA
Protein sequence

>Msa0552090

MASKRIVKELKDLQRDPPTSCSAGPVGEDMFHWQATIIGPNDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEVAHMCKTDRVKYESTARSWTQKFAMG*