Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0274310 | XP_003593782.1 | 100.000 | 314 | 0 | 0 | 1 | 314 | 1 | 314 | 0.0 | 638 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0274310 | sp|Q8L940|PDX13_ARATH | 91.083 | 314 | 23 | 1 | 1 | 314 | 1 | 309 | 0.0 | 585 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0274310 | Q45FF2 | 100.000 | 314 | 0 | 0 | 1 | 314 | 1 | 314 | 0.0 | 638 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0029520 | Msa0274310 | 0.832924 | 7.159770e-56 | -8.615850e-47 |
| Msa0093950 | Msa0274310 | 0.842160 | 3.064046e-58 | -8.615850e-47 |
| Msa0101500 | Msa0274310 | 0.878838 | 2.031217e-69 | -8.615850e-47 |
| Msa0108760 | Msa0274310 | -0.809144 | 2.187335e-50 | -8.615850e-47 |
| Msa0168310 | Msa0274310 | -0.811312 | 7.456308e-51 | -8.615850e-47 |
| Msa0194190 | Msa0274310 | 0.804911 | 1.720602e-49 | -8.615850e-47 |
| Msa0220400 | Msa0274310 | 0.843808 | 1.115439e-58 | -8.615850e-47 |
| Msa0235970 | Msa0274310 | 0.906231 | 1.850658e-80 | -8.615850e-47 |
| Msa0274310 | Msa0552090 | 0.817346 | 3.458684e-52 | -8.615850e-47 |
| Msa0274310 | Msa0606640 | 0.864178 | 1.466111e-64 | -8.615850e-47 |
| Msa0274310 | Msa0686860 | 0.835997 | 1.211018e-56 | -8.615850e-47 |
| Msa0274310 | Msa1031660 | -0.839451 | 1.572523e-57 | -8.615850e-47 |
| Msa0274310 | Msa1070720 | -0.848130 | 7.458083e-60 | -8.615850e-47 |
| Msa0274310 | Msa1211230 | 0.821895 | 3.165376e-53 | -8.615850e-47 |
| Msa0274310 | Msa1211420 | 0.806593 | 7.630120e-50 | -8.615850e-47 |
| Msa0274310 | Msa1299400 | 0.829403 | 5.249993e-55 | -8.615850e-47 |
| Msa0274310 | Msa1331050 | 0.830908 | 2.253174e-55 | -8.615850e-47 |
| Msa0274310 | Msa1364350 | 0.802095 | 6.599765e-49 | -8.615850e-47 |
| Msa0274310 | Msa1384760 | 0.869221 | 3.643694e-66 | -8.615850e-47 |
| Msa0274310 | Msa1435390 | -0.810083 | 1.375070e-50 | -8.615850e-47 |
| Msa0274310 | Msa1440930 | -0.818357 | 2.044372e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0274310 | MtrunA17_Chr2g0284561 | 100.000 | 314 | 0 | 0 | 1 | 314 | 1 | 314 | 0.0 | 638 |
| Msa0274310 | MtrunA17_Chr4g0004581 | 57.616 | 302 | 105 | 4 | 1 | 301 | 1 | 280 | 1.28e-119 | 345 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0274310 | AT5G01410.2 | 91.083 | 314 | 23 | 1 | 1 | 314 | 1 | 309 | 0.0 | 585 |
| Msa0274310 | AT5G01410.1 | 91.083 | 314 | 23 | 1 | 1 | 314 | 1 | 309 | 0.0 | 585 |
| Msa0274310 | AT2G38230.1 | 86.943 | 314 | 36 | 2 | 1 | 314 | 1 | 309 | 0.0 | 554 |
| Msa0274310 | AT3G16050.1 | 62.939 | 313 | 107 | 3 | 2 | 313 | 9 | 313 | 3.64e-144 | 409 |
| Msa0274310 | AT2G38210.1 | 84.146 | 82 | 9 | 1 | 1 | 82 | 1 | 78 | 7.35e-39 | 132 |
Find 94 sgRNAs with CRISPR-Local
Find 206 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTACAGTGATCCTGAGATTT+TGG | 0.180703 | 2_3:-6158380 | Msa0274310:CDS |
| CGCTTGCGCCGTCATGGCCT+TGG | 0.264353 | 2_3:-6159037 | Msa0274310:CDS |
| TCGTCATGTGCGTTCTGTTT+TGG | 0.284365 | 2_3:-6158668 | Msa0274310:CDS |
| GACGGAGAATGGGGAGGATT+TGG | 0.292034 | 2_3:+6159146 | None:intergenic |
| CCAGCAGCAAACTGCACAAC+AGG | 0.295714 | 2_3:+6158535 | None:intergenic |
| GGAGGATTTGGTGGTGGTGG+AGG | 0.317871 | 2_3:+6159158 | None:intergenic |
| TTCCGTATTCCTTTCGTTTG+TGG | 0.325330 | 2_3:-6158790 | Msa0274310:CDS |
| CCTGTTGTGCAGTTTGCTGC+TGG | 0.331604 | 2_3:-6158535 | Msa0274310:CDS |
| TGGGGAGGATTTGGTGGTGG+TGG | 0.346825 | 2_3:+6159155 | None:intergenic |
| GGTGGTGGTGGAGGTTGTTT+CGG | 0.349577 | 2_3:+6159167 | None:intergenic |
| ATGTTGAGAGGTTTGCTAAT+AGG | 0.372798 | 2_3:-6158300 | Msa0274310:CDS |
| CCTTGAGCGCGGATGTCGGC+GGG | 0.383754 | 2_3:+6159006 | None:intergenic |
| AGGCCGACTTTGACGGAGAA+TGG | 0.394093 | 2_3:+6159135 | None:intergenic |
| GGCCGACTTTGACGGAGAAT+GGG | 0.401997 | 2_3:+6159136 | None:intergenic |
| GGCTGAGGTTAGTTGTGGAT+TGG | 0.407923 | 2_3:-6158359 | Msa0274310:CDS |
| GGCCATGACGGCGCAAGCGC+CGG | 0.420801 | 2_3:+6159041 | None:intergenic |
| TTCAGCGATACGAGCTTGTT+CGG | 0.421940 | 2_3:+6159068 | None:intergenic |
| TCCAGTACCAGCTTCACCTT+TGG | 0.422451 | 2_3:+6158708 | None:intergenic |
| TTCACCTTTGGTACGAATCA+TGG | 0.424363 | 2_3:+6158720 | None:intergenic |
| TTGATTTCTTTGATGAGTTG+AGG | 0.426615 | 2_3:+6158961 | None:intergenic |
| TGGCAGCACCTTCGCGAATA+CGG | 0.443839 | 2_3:+6158740 | None:intergenic |
| AGCCACAAACGAAAGGAATA+CGG | 0.446627 | 2_3:+6158788 | None:intergenic |
| TGATTTCTTTGATGAGTTGA+GGG | 0.448026 | 2_3:+6158962 | None:intergenic |
| GCTGAGGTTAGTTGTGGATT+GGG | 0.457039 | 2_3:-6158358 | Msa0274310:CDS |
| AATCGATTCCGAGAGATTCA+AGG | 0.462482 | 2_3:+6158875 | None:intergenic |
| TGTGGCGACACCGGCGGATG+CGG | 0.465593 | 2_3:-6158509 | Msa0274310:CDS |
| ACCAAAGGTGAAGCTGGTAC+TGG | 0.471439 | 2_3:-6158709 | Msa0274310:CDS |
| GTCTGCATAACAAGATCATA+AGG | 0.475122 | 2_3:+6158577 | None:intergenic |
| GAATGGGGAGGATTTGGTGG+TGG | 0.483771 | 2_3:+6159152 | None:intergenic |
| ATCATCAACGCCGCATCCGC+CGG | 0.489068 | 2_3:+6158499 | None:intergenic |
| GAAATGACCGATACGAGCTT+TGG | 0.495581 | 2_3:+6158912 | None:intergenic |
| ATACGAGCTTTGGCCATGAC+AGG | 0.496509 | 2_3:+6158922 | None:intergenic |
| TCCGGAGTCGTAACCGTCTA+CGG | 0.497613 | 2_3:-6159204 | Msa0274310:CDS |
| GCCTTGAGCGCGGATGTCGG+CGG | 0.499487 | 2_3:+6159005 | None:intergenic |
| GGAGAATGGGGAGGATTTGG+TGG | 0.500498 | 2_3:+6159149 | None:intergenic |
| TGTGTTTAAGAGTGGGGATC+CGG | 0.500830 | 2_3:-6158440 | Msa0274310:CDS |
| ATGATGCAGCTTGGTTGTGA+TGG | 0.500907 | 2_3:-6158481 | Msa0274310:CDS |
| CCCGCCGACATCCGCGCTCA+AGG | 0.502035 | 2_3:-6159006 | Msa0274310:CDS |
| GCTCCGCGGCGGTGTCATCA+TGG | 0.504945 | 2_3:-6159103 | Msa0274310:CDS |
| TTGAGCGAGGCCGACTTTGA+CGG | 0.505616 | 2_3:+6159128 | None:intergenic |
| GGTTCTGGTGTGTTTAAGAG+TGG | 0.505931 | 2_3:-6158448 | Msa0274310:CDS |
| AGCCGGCGCTTGCGCCGTCA+TGG | 0.506739 | 2_3:-6159043 | Msa0274310:CDS |
| GGATTGGGCGAAGCTATGGT+TGG | 0.507893 | 2_3:-6158343 | Msa0274310:CDS |
| TTCTTTGATGAGTTGAGGGT+CGG | 0.509203 | 2_3:+6158966 | None:intergenic |
| TTGTGGATTGGGCGAAGCTA+TGG | 0.514120 | 2_3:-6158347 | Msa0274310:CDS |
| CCCCTCACCATGGAAGGATC+CGG | 0.514984 | 2_3:-6159222 | None:intergenic |
| GTTGTGCAGTTTGCTGCTGG+TGG | 0.515305 | 2_3:-6158532 | Msa0274310:CDS |
| GTTCTGGTGTGTTTAAGAGT+GGG | 0.517289 | 2_3:-6158447 | Msa0274310:CDS |
| GCCGCCTTGAGCGCGGATGT+CGG | 0.518062 | 2_3:+6159002 | None:intergenic |
| TGTGATTGTCTTCATCAGCT+AGG | 0.518201 | 2_3:+6158827 | None:intergenic |
| GCTCGTATCGCTGAAGAAGC+CGG | 0.522227 | 2_3:-6159060 | Msa0274310:CDS |
| CTAACCTCAGCCAAAATCTC+AGG | 0.523396 | 2_3:+6158370 | None:intergenic |
| CGCCGTCACCATCCCTGTCA+TGG | 0.523650 | 2_3:-6158935 | Msa0274310:CDS |
| GAGGAACATGGATGAAGATG+AGG | 0.527866 | 2_3:-6158629 | Msa0274310:CDS |
| TGCTGGTGGTGTGGCGACAC+CGG | 0.534597 | 2_3:-6158518 | Msa0274310:CDS |
| ATTCGTACCAAAGGTGAAGC+TGG | 0.543654 | 2_3:-6158715 | Msa0274310:CDS |
| GATTGGGCGAAGCTATGGTT+GGG | 0.544098 | 2_3:-6158342 | Msa0274310:CDS |
| GGCCATGACAGGGATGGTGA+CGG | 0.547780 | 2_3:+6158933 | None:intergenic |
| GCCGTAGACGGTTACGACTC+CGG | 0.552703 | 2_3:+6159203 | None:intergenic |
| GCTCAGATCCTTGAATCTCT+CGG | 0.554374 | 2_3:-6158883 | Msa0274310:CDS |
| GTGATTGTCTTCATCAGCTA+GGG | 0.560345 | 2_3:+6158828 | None:intergenic |
| GTCGTAACCGTCTACGGCAA+CGG | 0.561391 | 2_3:-6159198 | Msa0274310:CDS |
| GTTTGTGGCTGTCGTAACCT+CGG | 0.564694 | 2_3:-6158775 | Msa0274310:CDS |
| GTTATGCAGACTAAGCAACT+TGG | 0.570305 | 2_3:-6158565 | Msa0274310:CDS |
| GAGTGCACCGTTGCCGTAGA+CGG | 0.571653 | 2_3:+6159191 | None:intergenic |
| TTCTGGTGTGTTTAAGAGTG+GGG | 0.572350 | 2_3:-6158446 | Msa0274310:CDS |
| TACGACTCCGGATCCTTCCA+TGG | 0.572782 | 2_3:+6159215 | None:intergenic |
| GCGGCGTTGATGATGCAGCT+TGG | 0.576055 | 2_3:-6158490 | Msa0274310:CDS |
| GAGCAACGCCGCCTTGAGCG+CGG | 0.578549 | 2_3:+6158995 | None:intergenic |
| GACACGCTCCAAGGCCATGA+CGG | 0.586431 | 2_3:+6159029 | None:intergenic |
| GTCATGGCCAAAGCTCGTAT+CGG | 0.604175 | 2_3:-6158919 | Msa0274310:CDS |
| CTCGCTCAAATGCTCCGCGG+CGG | 0.607268 | 2_3:-6159114 | Msa0274310:CDS |
| TGACTGATCATAATGTTGAG+AGG | 0.607276 | 2_3:-6158312 | Msa0274310:CDS |
| GCCGACTTTGACGGAGAATG+GGG | 0.610613 | 2_3:+6159137 | None:intergenic |
| GGGATCCGGCGAAAAGAGCG+AGG | 0.611909 | 2_3:-6158426 | Msa0274310:CDS |
| GCAGTTTGCTGCTGGTGGTG+TGG | 0.612599 | 2_3:-6158527 | Msa0274310:CDS |
| GACTTTGACGGAGAATGGGG+AGG | 0.614803 | 2_3:+6159140 | None:intergenic |
| TACGAGCTTTGGCCATGACA+GGG | 0.619481 | 2_3:+6158923 | None:intergenic |
| AGCTTTGGCCATGACAGGGA+TGG | 0.623887 | 2_3:+6158927 | None:intergenic |
| TCCCCATTCTCCGTCAAAGT+CGG | 0.626781 | 2_3:-6159138 | Msa0274310:CDS |
| GTCGGCGGGGACACGCTCCA+AGG | 0.628734 | 2_3:+6159020 | None:intergenic |
| GCTCTTCGCCGTATTCGCGA+AGG | 0.629697 | 2_3:-6158748 | Msa0274310:CDS |
| GCCGACATCCGCGCTCAAGG+CGG | 0.633654 | 2_3:-6159003 | Msa0274310:CDS |
| TTACGACAGCCACAAACGAA+AGG | 0.637367 | 2_3:+6158781 | None:intergenic |
| GCTGCCATGATTCGTACCAA+AGG | 0.643185 | 2_3:-6158724 | Msa0274310:CDS |
| CGCCGCGGAGCATTTGAGCG+AGG | 0.643339 | 2_3:+6159115 | None:intergenic |
| TGCAGACTAAGCAACTTGGA+AGG | 0.649819 | 2_3:-6158561 | Msa0274310:CDS |
| CATGACAGGGATGGTGACGG+CGG | 0.652699 | 2_3:+6158936 | None:intergenic |
| TGGTGGTGTGGCGACACCGG+CGG | 0.656866 | 2_3:-6158515 | Msa0274310:CDS |
| CTTGAGCGCGGATGTCGGCG+GGG | 0.673216 | 2_3:+6159007 | None:intergenic |
| GGATCCGGCGAAAAGAGCGA+GGG | 0.694405 | 2_3:-6158425 | Msa0274310:CDS |
| GGCCTCGCTCAAATGCTCCG+CGG | 0.749927 | 2_3:-6159117 | Msa0274310:CDS |
| CGTCCATGATGACACCGCCG+CGG | 0.762873 | 2_3:+6159100 | None:intergenic |
| TACGGCGAAGAGCTTCACCG+AGG | 0.777929 | 2_3:+6158758 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTACTTTTGCTAAGAAAAT+TGG | - | chr2_3:6158900-6158919 | Msa0274310:CDS | 20.0% |
| !!! | TTTACTTTTGCTAAGAAAAT+TGG | - | chr2_3:6158900-6158919 | Msa0274310:CDS | 20.0% |
| ! | TGATTTCTTTGATGAGTTGA+GGG | + | chr2_3:6158545-6158564 | None:intergenic | 30.0% |
| TTGATTTCTTTGATGAGTTG+AGG | + | chr2_3:6158546-6158565 | None:intergenic | 30.0% | |
| !! | TTCTGTTTTGGGTGATATTA+GGG | - | chr2_3:6158848-6158867 | Msa0274310:CDS | 30.0% |
| ! | TGATTTCTTTGATGAGTTGA+GGG | + | chr2_3:6158545-6158564 | None:intergenic | 30.0% |
| TTGATTTCTTTGATGAGTTG+AGG | + | chr2_3:6158546-6158565 | None:intergenic | 30.0% | |
| !! | TTCTGTTTTGGGTGATATTA+GGG | - | chr2_3:6158848-6158867 | Msa0274310:CDS | 30.0% |
| !! | GTTCTGTTTTGGGTGATATT+AGG | - | chr2_3:6158847-6158866 | Msa0274310:CDS | 35.0% |
| !!! | TATTAGGGTTTTGAGGAACA+TGG | - | chr2_3:6158863-6158882 | Msa0274310:CDS | 35.0% |
| GTCTGCATAACAAGATCATA+AGG | + | chr2_3:6158930-6158949 | None:intergenic | 35.0% | |
| ! | TTACAGTGATCCTGAGATTT+TGG | - | chr2_3:6159124-6159143 | Msa0274310:CDS | 35.0% |
| TGACTGATCATAATGTTGAG+AGG | - | chr2_3:6159192-6159211 | Msa0274310:CDS | 35.0% | |
| !! | ATGTTGAGAGGTTTGCTAAT+AGG | - | chr2_3:6159204-6159223 | Msa0274310:CDS | 35.0% |
| !! | GTTCTGTTTTGGGTGATATT+AGG | - | chr2_3:6158847-6158866 | Msa0274310:CDS | 35.0% |
| !!! | TATTAGGGTTTTGAGGAACA+TGG | - | chr2_3:6158863-6158882 | Msa0274310:CDS | 35.0% |
| GTCTGCATAACAAGATCATA+AGG | + | chr2_3:6158930-6158949 | None:intergenic | 35.0% | |
| ! | TTACAGTGATCCTGAGATTT+TGG | - | chr2_3:6159124-6159143 | Msa0274310:CDS | 35.0% |
| TGACTGATCATAATGTTGAG+AGG | - | chr2_3:6159192-6159211 | Msa0274310:CDS | 35.0% | |
| !! | ATGTTGAGAGGTTTGCTAAT+AGG | - | chr2_3:6159204-6159223 | Msa0274310:CDS | 35.0% |
| ! | TTCTTTGATGAGTTGAGGGT+CGG | + | chr2_3:6158541-6158560 | None:intergenic | 40.0% |
| ! | AATCGATTCCGAGAGATTCA+AGG | + | chr2_3:6158632-6158651 | None:intergenic | 40.0% |
| GTGATTGTCTTCATCAGCTA+GGG | + | chr2_3:6158679-6158698 | None:intergenic | 40.0% | |
| TGTGATTGTCTTCATCAGCT+AGG | + | chr2_3:6158680-6158699 | None:intergenic | 40.0% | |
| TTCCGTATTCCTTTCGTTTG+TGG | - | chr2_3:6158714-6158733 | Msa0274310:CDS | 40.0% | |
| AGCCACAAACGAAAGGAATA+CGG | + | chr2_3:6158719-6158738 | None:intergenic | 40.0% | |
| TTCACCTTTGGTACGAATCA+TGG | + | chr2_3:6158787-6158806 | None:intergenic | 40.0% | |
| ! | TGGGTGATATTAGGGTTTTG+AGG | - | chr2_3:6158856-6158875 | Msa0274310:CDS | 40.0% |
| GTTATGCAGACTAAGCAACT+TGG | - | chr2_3:6158939-6158958 | Msa0274310:CDS | 40.0% | |
| !! | GGTTGTGATGGTGTTTTTGT+TGG | - | chr2_3:6159035-6159054 | Msa0274310:CDS | 40.0% |
| !!! | GATGGTGTTTTTGTTGGTTC+TGG | - | chr2_3:6159041-6159060 | Msa0274310:CDS | 40.0% |
| GTTCTGGTGTGTTTAAGAGT+GGG | - | chr2_3:6159057-6159076 | Msa0274310:CDS | 40.0% | |
| TTCTGGTGTGTTTAAGAGTG+GGG | - | chr2_3:6159058-6159077 | Msa0274310:CDS | 40.0% | |
| !!! | ATTTTGGCTGAGGTTAGTTG+TGG | - | chr2_3:6159140-6159159 | Msa0274310:CDS | 40.0% |
| ! | TTCTTTGATGAGTTGAGGGT+CGG | + | chr2_3:6158541-6158560 | None:intergenic | 40.0% |
| ! | AATCGATTCCGAGAGATTCA+AGG | + | chr2_3:6158632-6158651 | None:intergenic | 40.0% |
| GTGATTGTCTTCATCAGCTA+GGG | + | chr2_3:6158679-6158698 | None:intergenic | 40.0% | |
| TGTGATTGTCTTCATCAGCT+AGG | + | chr2_3:6158680-6158699 | None:intergenic | 40.0% | |
| TTCCGTATTCCTTTCGTTTG+TGG | - | chr2_3:6158714-6158733 | Msa0274310:CDS | 40.0% | |
| AGCCACAAACGAAAGGAATA+CGG | + | chr2_3:6158719-6158738 | None:intergenic | 40.0% | |
| TTCACCTTTGGTACGAATCA+TGG | + | chr2_3:6158787-6158806 | None:intergenic | 40.0% | |
| ! | TGGGTGATATTAGGGTTTTG+AGG | - | chr2_3:6158856-6158875 | Msa0274310:CDS | 40.0% |
| GTTATGCAGACTAAGCAACT+TGG | - | chr2_3:6158939-6158958 | Msa0274310:CDS | 40.0% | |
| !! | GGTTGTGATGGTGTTTTTGT+TGG | - | chr2_3:6159035-6159054 | Msa0274310:CDS | 40.0% |
| !!! | GATGGTGTTTTTGTTGGTTC+TGG | - | chr2_3:6159041-6159060 | Msa0274310:CDS | 40.0% |
| GTTCTGGTGTGTTTAAGAGT+GGG | - | chr2_3:6159057-6159076 | Msa0274310:CDS | 40.0% | |
| TTCTGGTGTGTTTAAGAGTG+GGG | - | chr2_3:6159058-6159077 | Msa0274310:CDS | 40.0% | |
| !!! | ATTTTGGCTGAGGTTAGTTG+TGG | - | chr2_3:6159140-6159159 | Msa0274310:CDS | 40.0% |
| ! | TTCAGCGATACGAGCTTGTT+CGG | + | chr2_3:6158439-6158458 | None:intergenic | 45.0% |
| GAAATGACCGATACGAGCTT+TGG | + | chr2_3:6158595-6158614 | None:intergenic | 45.0% | |
| GCTCAGATCCTTGAATCTCT+CGG | - | chr2_3:6158621-6158640 | Msa0274310:CDS | 45.0% | |
| TTACGACAGCCACAAACGAA+AGG | + | chr2_3:6158726-6158745 | None:intergenic | 45.0% | |
| ATTCGTACCAAAGGTGAAGC+TGG | - | chr2_3:6158789-6158808 | Msa0274310:CDS | 45.0% | |
| ! | TCGTCATGTGCGTTCTGTTT+TGG | - | chr2_3:6158836-6158855 | Msa0274310:CDS | 45.0% |
| ! | CGTCATGTGCGTTCTGTTTT+GGG | - | chr2_3:6158837-6158856 | Msa0274310:CDS | 45.0% |
| GAGGAACATGGATGAAGATG+AGG | - | chr2_3:6158875-6158894 | Msa0274310:CDS | 45.0% | |
| TGCAGACTAAGCAACTTGGA+AGG | - | chr2_3:6158943-6158962 | Msa0274310:CDS | 45.0% | |
| ATGATGCAGCTTGGTTGTGA+TGG | - | chr2_3:6159023-6159042 | Msa0274310:CDS | 45.0% | |
| ! | GGTTCTGGTGTGTTTAAGAG+TGG | - | chr2_3:6159056-6159075 | Msa0274310:CDS | 45.0% |
| TGTGTTTAAGAGTGGGGATC+CGG | - | chr2_3:6159064-6159083 | Msa0274310:CDS | 45.0% | |
| !!! | TGATCCTGAGATTTTGGCTG+AGG | - | chr2_3:6159130-6159149 | Msa0274310:CDS | 45.0% |
| CTAACCTCAGCCAAAATCTC+AGG | + | chr2_3:6159137-6159156 | None:intergenic | 45.0% | |
| ! | GCTGAGGTTAGTTGTGGATT+GGG | - | chr2_3:6159146-6159165 | Msa0274310:CDS | 45.0% |
| ! | TTCAGCGATACGAGCTTGTT+CGG | + | chr2_3:6158439-6158458 | None:intergenic | 45.0% |
| GAAATGACCGATACGAGCTT+TGG | + | chr2_3:6158595-6158614 | None:intergenic | 45.0% | |
| GCTCAGATCCTTGAATCTCT+CGG | - | chr2_3:6158621-6158640 | Msa0274310:CDS | 45.0% | |
| TTACGACAGCCACAAACGAA+AGG | + | chr2_3:6158726-6158745 | None:intergenic | 45.0% | |
| ATTCGTACCAAAGGTGAAGC+TGG | - | chr2_3:6158789-6158808 | Msa0274310:CDS | 45.0% | |
| ! | TCGTCATGTGCGTTCTGTTT+TGG | - | chr2_3:6158836-6158855 | Msa0274310:CDS | 45.0% |
| ! | CGTCATGTGCGTTCTGTTTT+GGG | - | chr2_3:6158837-6158856 | Msa0274310:CDS | 45.0% |
| GAGGAACATGGATGAAGATG+AGG | - | chr2_3:6158875-6158894 | Msa0274310:CDS | 45.0% | |
| TGCAGACTAAGCAACTTGGA+AGG | - | chr2_3:6158943-6158962 | Msa0274310:CDS | 45.0% | |
| ATGATGCAGCTTGGTTGTGA+TGG | - | chr2_3:6159023-6159042 | Msa0274310:CDS | 45.0% | |
| ! | GGTTCTGGTGTGTTTAAGAG+TGG | - | chr2_3:6159056-6159075 | Msa0274310:CDS | 45.0% |
| TGTGTTTAAGAGTGGGGATC+CGG | - | chr2_3:6159064-6159083 | Msa0274310:CDS | 45.0% | |
| !!! | TGATCCTGAGATTTTGGCTG+AGG | - | chr2_3:6159130-6159149 | Msa0274310:CDS | 45.0% |
| CTAACCTCAGCCAAAATCTC+AGG | + | chr2_3:6159137-6159156 | None:intergenic | 45.0% | |
| ! | GCTGAGGTTAGTTGTGGATT+GGG | - | chr2_3:6159146-6159165 | Msa0274310:CDS | 45.0% |
| TCCCCATTCTCCGTCAAAGT+CGG | - | chr2_3:6158366-6158385 | Msa0274310:CDS | 50.0% | |
| ! | TACGAGCTTTGGCCATGACA+GGG | + | chr2_3:6158584-6158603 | None:intergenic | 50.0% |
| ! | ATACGAGCTTTGGCCATGAC+AGG | + | chr2_3:6158585-6158604 | None:intergenic | 50.0% |
| GTCATGGCCAAAGCTCGTAT+CGG | - | chr2_3:6158585-6158604 | Msa0274310:CDS | 50.0% | |
| GTTTGTGGCTGTCGTAACCT+CGG | - | chr2_3:6158729-6158748 | Msa0274310:CDS | 50.0% | |
| GCTGCCATGATTCGTACCAA+AGG | - | chr2_3:6158780-6158799 | Msa0274310:CDS | 50.0% | |
| ACCAAAGGTGAAGCTGGTAC+TGG | - | chr2_3:6158795-6158814 | Msa0274310:CDS | 50.0% | |
| TCCAGTACCAGCTTCACCTT+TGG | + | chr2_3:6158799-6158818 | None:intergenic | 50.0% | |
| ! | GGCTGAGGTTAGTTGTGGAT+TGG | - | chr2_3:6159145-6159164 | Msa0274310:CDS | 50.0% |
| !! | TTGTGGATTGGGCGAAGCTA+TGG | - | chr2_3:6159157-6159176 | Msa0274310:CDS | 50.0% |
| GATTGGGCGAAGCTATGGTT+GGG | - | chr2_3:6159162-6159181 | Msa0274310:CDS | 50.0% | |
| TCCCCATTCTCCGTCAAAGT+CGG | - | chr2_3:6158366-6158385 | Msa0274310:CDS | 50.0% | |
| ! | TACGAGCTTTGGCCATGACA+GGG | + | chr2_3:6158584-6158603 | None:intergenic | 50.0% |
| ! | ATACGAGCTTTGGCCATGAC+AGG | + | chr2_3:6158585-6158604 | None:intergenic | 50.0% |
| GTCATGGCCAAAGCTCGTAT+CGG | - | chr2_3:6158585-6158604 | Msa0274310:CDS | 50.0% | |
| GTTTGTGGCTGTCGTAACCT+CGG | - | chr2_3:6158729-6158748 | Msa0274310:CDS | 50.0% | |
| GCTGCCATGATTCGTACCAA+AGG | - | chr2_3:6158780-6158799 | Msa0274310:CDS | 50.0% | |
| ACCAAAGGTGAAGCTGGTAC+TGG | - | chr2_3:6158795-6158814 | Msa0274310:CDS | 50.0% | |
| TCCAGTACCAGCTTCACCTT+TGG | + | chr2_3:6158799-6158818 | None:intergenic | 50.0% | |
| ! | GGCTGAGGTTAGTTGTGGAT+TGG | - | chr2_3:6159145-6159164 | Msa0274310:CDS | 50.0% |
| !! | TTGTGGATTGGGCGAAGCTA+TGG | - | chr2_3:6159157-6159176 | Msa0274310:CDS | 50.0% |
| GATTGGGCGAAGCTATGGTT+GGG | - | chr2_3:6159162-6159181 | Msa0274310:CDS | 50.0% | |
| TCCGGAGTCGTAACCGTCTA+CGG | - | chr2_3:6158300-6158319 | Msa0274310:CDS | 55.0% | |
| GTCGTAACCGTCTACGGCAA+CGG | - | chr2_3:6158306-6158325 | Msa0274310:CDS | 55.0% | |
| !! | GGTGGTGGTGGAGGTTGTTT+CGG | + | chr2_3:6158340-6158359 | None:intergenic | 55.0% |
| !! | GAATGGGGAGGATTTGGTGG+TGG | + | chr2_3:6158355-6158374 | None:intergenic | 55.0% |
| GGAGAATGGGGAGGATTTGG+TGG | + | chr2_3:6158358-6158377 | None:intergenic | 55.0% | |
| GACGGAGAATGGGGAGGATT+TGG | + | chr2_3:6158361-6158380 | None:intergenic | 55.0% | |
| GACTTTGACGGAGAATGGGG+AGG | + | chr2_3:6158367-6158386 | None:intergenic | 55.0% | |
| ! | GCCGACTTTGACGGAGAATG+GGG | + | chr2_3:6158370-6158389 | None:intergenic | 55.0% |
| ! | GGCCGACTTTGACGGAGAAT+GGG | + | chr2_3:6158371-6158390 | None:intergenic | 55.0% |
| ! | AGGCCGACTTTGACGGAGAA+TGG | + | chr2_3:6158372-6158391 | None:intergenic | 55.0% |
| ! | TTGAGCGAGGCCGACTTTGA+CGG | + | chr2_3:6158379-6158398 | None:intergenic | 55.0% |
| GCTCGTATCGCTGAAGAAGC+CGG | - | chr2_3:6158444-6158463 | Msa0274310:CDS | 55.0% | |
| ! | AGCTTTGGCCATGACAGGGA+TGG | + | chr2_3:6158580-6158599 | None:intergenic | 55.0% |
| TGGCAGCACCTTCGCGAATA+CGG | + | chr2_3:6158767-6158786 | None:intergenic | 55.0% | |
| CCAGCAGCAAACTGCACAAC+AGG | + | chr2_3:6158972-6158991 | None:intergenic | 55.0% | |
| !! | CCTGTTGTGCAGTTTGCTGC+TGG | - | chr2_3:6158969-6158988 | Msa0274310:CDS | 55.0% |
| !! | GTTGTGCAGTTTGCTGCTGG+TGG | - | chr2_3:6158972-6158991 | Msa0274310:CDS | 55.0% |
| GGATTGGGCGAAGCTATGGT+TGG | - | chr2_3:6159161-6159180 | Msa0274310:CDS | 55.0% | |
| TCCGGAGTCGTAACCGTCTA+CGG | - | chr2_3:6158300-6158319 | Msa0274310:CDS | 55.0% | |
| GTCGTAACCGTCTACGGCAA+CGG | - | chr2_3:6158306-6158325 | Msa0274310:CDS | 55.0% | |
| !! | GGTGGTGGTGGAGGTTGTTT+CGG | + | chr2_3:6158340-6158359 | None:intergenic | 55.0% |
| !! | GAATGGGGAGGATTTGGTGG+TGG | + | chr2_3:6158355-6158374 | None:intergenic | 55.0% |
| GGAGAATGGGGAGGATTTGG+TGG | + | chr2_3:6158358-6158377 | None:intergenic | 55.0% | |
| GACGGAGAATGGGGAGGATT+TGG | + | chr2_3:6158361-6158380 | None:intergenic | 55.0% | |
| GACTTTGACGGAGAATGGGG+AGG | + | chr2_3:6158367-6158386 | None:intergenic | 55.0% | |
| ! | GCCGACTTTGACGGAGAATG+GGG | + | chr2_3:6158370-6158389 | None:intergenic | 55.0% |
| ! | GGCCGACTTTGACGGAGAAT+GGG | + | chr2_3:6158371-6158390 | None:intergenic | 55.0% |
| ! | AGGCCGACTTTGACGGAGAA+TGG | + | chr2_3:6158372-6158391 | None:intergenic | 55.0% |
| ! | TTGAGCGAGGCCGACTTTGA+CGG | + | chr2_3:6158379-6158398 | None:intergenic | 55.0% |
| GCTCGTATCGCTGAAGAAGC+CGG | - | chr2_3:6158444-6158463 | Msa0274310:CDS | 55.0% | |
| ! | AGCTTTGGCCATGACAGGGA+TGG | + | chr2_3:6158580-6158599 | None:intergenic | 55.0% |
| TGGCAGCACCTTCGCGAATA+CGG | + | chr2_3:6158767-6158786 | None:intergenic | 55.0% | |
| CCAGCAGCAAACTGCACAAC+AGG | + | chr2_3:6158972-6158991 | None:intergenic | 55.0% | |
| !! | CCTGTTGTGCAGTTTGCTGC+TGG | - | chr2_3:6158969-6158988 | Msa0274310:CDS | 55.0% |
| !! | GTTGTGCAGTTTGCTGCTGG+TGG | - | chr2_3:6158972-6158991 | Msa0274310:CDS | 55.0% |
| GGATTGGGCGAAGCTATGGT+TGG | - | chr2_3:6159161-6159180 | Msa0274310:CDS | 55.0% | |
| GCCGTAGACGGTTACGACTC+CGG | + | chr2_3:6158304-6158323 | None:intergenic | 60.0% | |
| GAGTGCACCGTTGCCGTAGA+CGG | + | chr2_3:6158316-6158335 | None:intergenic | 60.0% | |
| !! | GGAGGATTTGGTGGTGGTGG+AGG | + | chr2_3:6158349-6158368 | None:intergenic | 60.0% |
| !! | TGGGGAGGATTTGGTGGTGG+TGG | + | chr2_3:6158352-6158371 | None:intergenic | 60.0% |
| GACACGCTCCAAGGCCATGA+CGG | + | chr2_3:6158478-6158497 | None:intergenic | 60.0% | |
| !! | CATGACAGGGATGGTGACGG+CGG | + | chr2_3:6158571-6158590 | None:intergenic | 60.0% |
| GGCCATGACAGGGATGGTGA+CGG | + | chr2_3:6158574-6158593 | None:intergenic | 60.0% | |
| TACGGCGAAGAGCTTCACCG+AGG | + | chr2_3:6158749-6158768 | None:intergenic | 60.0% | |
| GCTCTTCGCCGTATTCGCGA+AGG | - | chr2_3:6158756-6158775 | Msa0274310:CDS | 60.0% | |
| !! | GCAGTTTGCTGCTGGTGGTG+TGG | - | chr2_3:6158977-6158996 | Msa0274310:CDS | 60.0% |
| ATCATCAACGCCGCATCCGC+CGG | + | chr2_3:6159008-6159027 | None:intergenic | 60.0% | |
| !! | GCGGCGTTGATGATGCAGCT+TGG | - | chr2_3:6159014-6159033 | Msa0274310:CDS | 60.0% |
| GGATCCGGCGAAAAGAGCGA+GGG | - | chr2_3:6159079-6159098 | Msa0274310:CDS | 60.0% | |
| ! | ATCGCCCTCGCTCTTTTCGC+CGG | + | chr2_3:6159086-6159105 | None:intergenic | 60.0% |
| GCCGTAGACGGTTACGACTC+CGG | + | chr2_3:6158304-6158323 | None:intergenic | 60.0% | |
| GAGTGCACCGTTGCCGTAGA+CGG | + | chr2_3:6158316-6158335 | None:intergenic | 60.0% | |
| !! | GGAGGATTTGGTGGTGGTGG+AGG | + | chr2_3:6158349-6158368 | None:intergenic | 60.0% |
| !! | TGGGGAGGATTTGGTGGTGG+TGG | + | chr2_3:6158352-6158371 | None:intergenic | 60.0% |
| GACACGCTCCAAGGCCATGA+CGG | + | chr2_3:6158478-6158497 | None:intergenic | 60.0% | |
| !! | CATGACAGGGATGGTGACGG+CGG | + | chr2_3:6158571-6158590 | None:intergenic | 60.0% |
| GGCCATGACAGGGATGGTGA+CGG | + | chr2_3:6158574-6158593 | None:intergenic | 60.0% | |
| TACGGCGAAGAGCTTCACCG+AGG | + | chr2_3:6158749-6158768 | None:intergenic | 60.0% | |
| GCTCTTCGCCGTATTCGCGA+AGG | - | chr2_3:6158756-6158775 | Msa0274310:CDS | 60.0% | |
| !! | GCAGTTTGCTGCTGGTGGTG+TGG | - | chr2_3:6158977-6158996 | Msa0274310:CDS | 60.0% |
| ATCATCAACGCCGCATCCGC+CGG | + | chr2_3:6159008-6159027 | None:intergenic | 60.0% | |
| !! | GCGGCGTTGATGATGCAGCT+TGG | - | chr2_3:6159014-6159033 | Msa0274310:CDS | 60.0% |
| GGATCCGGCGAAAAGAGCGA+GGG | - | chr2_3:6159079-6159098 | Msa0274310:CDS | 60.0% | |
| ! | ATCGCCCTCGCTCTTTTCGC+CGG | + | chr2_3:6159086-6159105 | None:intergenic | 60.0% |
| GGCCTCGCTCAAATGCTCCG+CGG | - | chr2_3:6158387-6158406 | Msa0274310:CDS | 65.0% | |
| CTCGCTCAAATGCTCCGCGG+CGG | - | chr2_3:6158390-6158409 | Msa0274310:CDS | 65.0% | |
| CGTCCATGATGACACCGCCG+CGG | + | chr2_3:6158407-6158426 | None:intergenic | 65.0% | |
| CGCCGTCACCATCCCTGTCA+TGG | - | chr2_3:6158569-6158588 | Msa0274310:CDS | 65.0% | |
| ! | TGCTGGTGGTGTGGCGACAC+CGG | - | chr2_3:6158986-6159005 | Msa0274310:CDS | 65.0% |
| GGGATCCGGCGAAAAGAGCG+AGG | - | chr2_3:6159078-6159097 | Msa0274310:CDS | 65.0% | |
| GGCCTCGCTCAAATGCTCCG+CGG | - | chr2_3:6158387-6158406 | Msa0274310:CDS | 65.0% | |
| CTCGCTCAAATGCTCCGCGG+CGG | - | chr2_3:6158390-6158409 | Msa0274310:CDS | 65.0% | |
| CGTCCATGATGACACCGCCG+CGG | + | chr2_3:6158407-6158426 | None:intergenic | 65.0% | |
| CGCCGTCACCATCCCTGTCA+TGG | - | chr2_3:6158569-6158588 | Msa0274310:CDS | 65.0% | |
| ! | TGCTGGTGGTGTGGCGACAC+CGG | - | chr2_3:6158986-6159005 | Msa0274310:CDS | 65.0% |
| GGGATCCGGCGAAAAGAGCG+AGG | - | chr2_3:6159078-6159097 | Msa0274310:CDS | 65.0% | |
| ! | CGCCGCGGAGCATTTGAGCG+AGG | + | chr2_3:6158392-6158411 | None:intergenic | 70.0% |
| !! | GCTCCGCGGCGGTGTCATCA+TGG | - | chr2_3:6158401-6158420 | Msa0274310:CDS | 70.0% |
| CGCTTGCGCCGTCATGGCCT+TGG | - | chr2_3:6158467-6158486 | Msa0274310:CDS | 70.0% | |
| CTTGAGCGCGGATGTCGGCG+GGG | + | chr2_3:6158500-6158519 | None:intergenic | 70.0% | |
| CCTTGAGCGCGGATGTCGGC+GGG | + | chr2_3:6158501-6158520 | None:intergenic | 70.0% | |
| GCCTTGAGCGCGGATGTCGG+CGG | + | chr2_3:6158502-6158521 | None:intergenic | 70.0% | |
| GCCGACATCCGCGCTCAAGG+CGG | - | chr2_3:6158501-6158520 | Msa0274310:CDS | 70.0% | |
| GCCGCCTTGAGCGCGGATGT+CGG | + | chr2_3:6158505-6158524 | None:intergenic | 70.0% | |
| GAGCAACGCCGCCTTGAGCG+CGG | + | chr2_3:6158512-6158531 | None:intergenic | 70.0% | |
| ! | TGGTGGTGTGGCGACACCGG+CGG | - | chr2_3:6158989-6159008 | Msa0274310:CDS | 70.0% |
| TGTGGCGACACCGGCGGATG+CGG | - | chr2_3:6158995-6159014 | Msa0274310:CDS | 70.0% | |
| ! | CGCCGCGGAGCATTTGAGCG+AGG | + | chr2_3:6158392-6158411 | None:intergenic | 70.0% |
| !! | GCTCCGCGGCGGTGTCATCA+TGG | - | chr2_3:6158401-6158420 | Msa0274310:CDS | 70.0% |
| CGCTTGCGCCGTCATGGCCT+TGG | - | chr2_3:6158467-6158486 | Msa0274310:CDS | 70.0% | |
| CTTGAGCGCGGATGTCGGCG+GGG | + | chr2_3:6158500-6158519 | None:intergenic | 70.0% | |
| CCTTGAGCGCGGATGTCGGC+GGG | + | chr2_3:6158501-6158520 | None:intergenic | 70.0% | |
| GCCTTGAGCGCGGATGTCGG+CGG | + | chr2_3:6158502-6158521 | None:intergenic | 70.0% | |
| GCCGACATCCGCGCTCAAGG+CGG | - | chr2_3:6158501-6158520 | Msa0274310:CDS | 70.0% | |
| GCCGCCTTGAGCGCGGATGT+CGG | + | chr2_3:6158505-6158524 | None:intergenic | 70.0% | |
| GAGCAACGCCGCCTTGAGCG+CGG | + | chr2_3:6158512-6158531 | None:intergenic | 70.0% | |
| ! | TGGTGGTGTGGCGACACCGG+CGG | - | chr2_3:6158989-6159008 | Msa0274310:CDS | 70.0% |
| TGTGGCGACACCGGCGGATG+CGG | - | chr2_3:6158995-6159014 | Msa0274310:CDS | 70.0% | |
| AGCCGGCGCTTGCGCCGTCA+TGG | - | chr2_3:6158461-6158480 | Msa0274310:CDS | 75.0% | |
| GGCCATGACGGCGCAAGCGC+CGG | + | chr2_3:6158466-6158485 | None:intergenic | 75.0% | |
| GTCGGCGGGGACACGCTCCA+AGG | + | chr2_3:6158487-6158506 | None:intergenic | 75.0% | |
| CCCGCCGACATCCGCGCTCA+AGG | - | chr2_3:6158498-6158517 | Msa0274310:CDS | 75.0% | |
| AGCCGGCGCTTGCGCCGTCA+TGG | - | chr2_3:6158461-6158480 | Msa0274310:CDS | 75.0% | |
| GGCCATGACGGCGCAAGCGC+CGG | + | chr2_3:6158466-6158485 | None:intergenic | 75.0% | |
| GTCGGCGGGGACACGCTCCA+AGG | + | chr2_3:6158487-6158506 | None:intergenic | 75.0% | |
| CCCGCCGACATCCGCGCTCA+AGG | - | chr2_3:6158498-6158517 | Msa0274310:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 6158291 | 6159235 | 6158291 | ID=Msa0274310;Name=Msa0274310 |
| chr2_3 | mRNA | 6158291 | 6159235 | 6158291 | ID=Msa0274310-mRNA-1;Parent=Msa0274310;Name=Msa0274310-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|314 |
| chr2_3 | exon | 6158291 | 6159235 | 6158291 | ID=Msa0274310-mRNA-1:exon:2871;Parent=Msa0274310-mRNA-1 |
| chr2_3 | CDS | 6158291 | 6159235 | 6158291 | ID=Msa0274310-mRNA-1:cds;Parent=Msa0274310-mRNA-1 |
| Gene Sequence |
| Protein sequence |
