Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1462680 | QKK82849.1 | 100.000 | 188 | 0 | 0 | 12 | 199 | 1 | 188 | 5.47e-136 | 388 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1462680 | sp|Q8W171|CYP1_SOYBN | 85.380 | 171 | 25 | 0 | 19 | 189 | 2 | 172 | 1.21e-108 | 311 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1462680 | A0A7G3TMU8 | 100.000 | 188 | 0 | 0 | 12 | 199 | 1 | 188 | 2.61e-136 | 388 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001550 | Msa1462680 | 0.828294 | 9.736313e-55 | -8.615850e-47 |
| Msa0002110 | Msa1462680 | 0.808449 | 3.080086e-50 | -8.615850e-47 |
| Msa0027020 | Msa1462680 | 0.805076 | 1.589203e-49 | -8.615850e-47 |
| Msa0029520 | Msa1462680 | 0.807439 | 5.051867e-50 | -8.615850e-47 |
| Msa0035050 | Msa1462680 | 0.836068 | 1.162120e-56 | -8.615850e-47 |
| Msa0042950 | Msa1462680 | 0.820414 | 6.946416e-53 | -8.615850e-47 |
| Msa0046020 | Msa1462680 | 0.833641 | 4.746148e-56 | -8.615850e-47 |
| Msa0066890 | Msa1462680 | 0.813954 | 1.970191e-51 | -8.615850e-47 |
| Msa0067370 | Msa1462680 | 0.807434 | 5.064312e-50 | -8.615850e-47 |
| Msa0067590 | Msa1462680 | 0.821263 | 4.431163e-53 | -8.615850e-47 |
| Msa0093950 | Msa1462680 | 0.820034 | 8.490033e-53 | -8.615850e-47 |
| Msa0094170 | Msa1462680 | 0.804701 | 1.903772e-49 | -8.615850e-47 |
| Msa0095810 | Msa1462680 | 0.811189 | 7.930503e-51 | -8.615850e-47 |
| Msa0111110 | Msa1462680 | 0.807705 | 4.436492e-50 | -8.615850e-47 |
| Msa0112550 | Msa1462680 | 0.810035 | 1.408103e-50 | -8.615850e-47 |
| Msa0112880 | Msa1462680 | 0.814796 | 1.283900e-51 | -8.615850e-47 |
| Msa1355030 | Msa1462680 | 0.808400 | 3.155030e-50 | -8.615850e-47 |
| Msa1356100 | Msa1462680 | 0.804472 | 2.125370e-49 | -8.615850e-47 |
| Msa1361670 | Msa1462680 | 0.807225 | 5.608394e-50 | -8.615850e-47 |
| Msa1364350 | Msa1462680 | 0.847106 | 1.426565e-59 | -8.615850e-47 |
| Msa1365030 | Msa1462680 | 0.993766 | 4.587553e-202 | -8.615850e-47 |
| Msa1367400 | Msa1462680 | 0.999729 | 0.000000e+00 | -8.615850e-47 |
| Msa1367690 | Msa1462680 | 0.820618 | 6.235450e-53 | -8.615850e-47 |
| Msa1373420 | Msa1462680 | 0.834156 | 3.527497e-56 | -8.615850e-47 |
| Msa1375610 | Msa1462680 | 0.832208 | 1.077981e-55 | -8.615850e-47 |
| Msa1376550 | Msa1462680 | 0.827609 | 1.423158e-54 | -8.615850e-47 |
| Msa1382380 | Msa1462680 | 0.855210 | 7.348926e-62 | -8.615850e-47 |
| Msa1386910 | Msa1462680 | 0.828709 | 7.732795e-55 | -8.615850e-47 |
| Msa1388030 | Msa1462680 | 0.831711 | 1.429470e-55 | -8.615850e-47 |
| Msa1407160 | Msa1462680 | 0.840991 | 6.227329e-58 | -8.615850e-47 |
| Msa1408230 | Msa1462680 | 0.804049 | 2.602659e-49 | -8.615850e-47 |
| Msa1410480 | Msa1462680 | 0.819137 | 1.360066e-52 | -8.615850e-47 |
| Msa1410500 | Msa1462680 | 0.809180 | 2.149607e-50 | -8.615850e-47 |
| Msa1415510 | Msa1462680 | 0.818316 | 2.089162e-52 | -8.615850e-47 |
| Msa1424490 | Msa1462680 | 0.824276 | 8.810448e-54 | -8.615850e-47 |
| Msa1431510 | Msa1462680 | 0.807738 | 4.365986e-50 | -8.615850e-47 |
| Msa1432100 | Msa1462680 | 0.808470 | 3.048034e-50 | -8.615850e-47 |
| Msa1434860 | Msa1462680 | 0.805797 | 1.122395e-49 | -8.615850e-47 |
| Msa1440140 | Msa1462680 | 0.815090 | 1.104615e-51 | -8.615850e-47 |
| Msa1444130 | Msa1462680 | 0.813628 | 2.324675e-51 | -8.615850e-47 |
| Msa1444690 | Msa1462680 | 0.806415 | 8.317518e-50 | -8.615850e-47 |
| Msa1444770 | Msa1462680 | 0.810641 | 1.041739e-50 | -8.615850e-47 |
| Msa1457390 | Msa1462680 | 0.811788 | 5.875658e-51 | -8.615850e-47 |
| Msa1461840 | Msa1462680 | 0.812912 | 3.338536e-51 | -8.615850e-47 |
| Msa0603690 | Msa1462680 | 0.816827 | 4.524008e-52 | -8.615850e-47 |
| Msa0605040 | Msa1462680 | 0.813420 | 2.582643e-51 | -8.615850e-47 |
| Msa0605160 | Msa1462680 | 0.815395 | 9.449948e-52 | -8.615850e-47 |
| Msa0606340 | Msa1462680 | 0.815066 | 1.118077e-51 | -8.615850e-47 |
| Msa0606350 | Msa1462680 | 0.806972 | 6.344951e-50 | -8.615850e-47 |
| Msa0606640 | Msa1462680 | 0.809124 | 2.209188e-50 | -8.615850e-47 |
| Msa0622480 | Msa1462680 | 0.800738 | 1.252145e-48 | -8.615850e-47 |
| Msa0637930 | Msa1462680 | 0.852940 | 3.320035e-61 | -8.615850e-47 |
| Msa0638010 | Msa1462680 | 0.864428 | 1.224470e-64 | -8.615850e-47 |
| Msa0649160 | Msa1462680 | 0.820634 | 6.184099e-53 | -8.615850e-47 |
| Msa0660960 | Msa1462680 | 0.809966 | 1.457307e-50 | -8.615850e-47 |
| Msa0667670 | Msa1462680 | 0.819007 | 1.455699e-52 | -8.615850e-47 |
| Msa0676570 | Msa1462680 | 0.804279 | 2.331233e-49 | -8.615850e-47 |
| Msa0686950 | Msa1462680 | 0.821802 | 3.326574e-53 | -8.615850e-47 |
| Msa0690100 | Msa1462680 | 0.815464 | 9.120502e-52 | -8.615850e-47 |
| Msa0695250 | Msa1462680 | 0.819867 | 9.266937e-53 | -8.615850e-47 |
| Msa0751490 | Msa1462680 | 0.801691 | 7.989526e-49 | -8.615850e-47 |
| Msa0788450 | Msa1462680 | 0.876493 | 1.336987e-68 | -8.615850e-47 |
| Msa0793130 | Msa1462680 | 0.834747 | 2.506919e-56 | -8.615850e-47 |
| Msa0820130 | Msa1462680 | 0.813207 | 2.877006e-51 | -8.615850e-47 |
| Msa0825570 | Msa1462680 | 0.876656 | 1.173638e-68 | -8.615850e-47 |
| Msa0826540 | Msa1462680 | 0.872922 | 2.190983e-67 | -8.615850e-47 |
| Msa0827520 | Msa1462680 | 0.821837 | 3.264648e-53 | -8.615850e-47 |
| Msa0829210 | Msa1462680 | 0.825964 | 3.517315e-54 | -8.615850e-47 |
| Msa0829250 | Msa1462680 | 0.802457 | 5.560542e-49 | -8.615850e-47 |
| Msa0833950 | Msa1462680 | 0.825616 | 4.254689e-54 | -8.615850e-47 |
| Msa0133140 | Msa1462680 | 0.801492 | 8.777639e-49 | -8.615850e-47 |
| Msa0136870 | Msa1462680 | 0.833787 | 4.363499e-56 | -8.615850e-47 |
| Msa0154880 | Msa1462680 | 0.812676 | 3.760910e-51 | -8.615850e-47 |
| Msa0154890 | Msa1462680 | 0.812453 | 4.207624e-51 | -8.615850e-47 |
| Msa0167160 | Msa1462680 | 0.814365 | 1.599062e-51 | -8.615850e-47 |
| Msa0168770 | Msa1462680 | 0.829534 | 4.878995e-55 | -8.615850e-47 |
| Msa0178840 | Msa1462680 | 0.825350 | 4.918197e-54 | -8.615850e-47 |
| Msa0187590 | Msa1462680 | 0.856819 | 2.486357e-62 | -8.615850e-47 |
| Msa0220400 | Msa1462680 | 0.817210 | 3.711206e-52 | -8.615850e-47 |
| Msa0223830 | Msa1462680 | 0.810967 | 8.858098e-51 | -8.615850e-47 |
| Msa0225190 | Msa1462680 | 0.831262 | 1.844317e-55 | -8.615850e-47 |
| Msa0225280 | Msa1462680 | 0.804031 | 2.625535e-49 | -8.615850e-47 |
| Msa0225790 | Msa1462680 | 0.801759 | 7.737776e-49 | -8.615850e-47 |
| Msa0234410 | Msa1462680 | 0.810329 | 1.216617e-50 | -8.615850e-47 |
| Msa1235620 | Msa1462680 | 0.803794 | 2.940506e-49 | -8.615850e-47 |
| Msa1236120 | Msa1462680 | 0.817734 | 2.827794e-52 | -8.615850e-47 |
| Msa1236190 | Msa1462680 | 0.801038 | 1.087377e-48 | -8.615850e-47 |
| Msa1251440 | Msa1462680 | 0.811376 | 7.220730e-51 | -8.615850e-47 |
| Msa1277270 | Msa1462680 | 0.825155 | 5.469810e-54 | -8.615850e-47 |
| Msa1279250 | Msa1462680 | 0.808124 | 3.612692e-50 | -8.615850e-47 |
| Msa1317290 | Msa1462680 | 0.802233 | 6.184234e-49 | -8.615850e-47 |
| Msa1333220 | Msa1462680 | 0.821171 | 4.652798e-53 | -8.615850e-47 |
| Msa1341850 | Msa1462680 | 0.812313 | 4.514644e-51 | -8.615850e-47 |
| Msa1342960 | Msa1462680 | 0.823812 | 1.132220e-53 | -8.615850e-47 |
| Msa0368450 | Msa1462680 | 0.826936 | 2.063839e-54 | -8.615850e-47 |
| Msa0378440 | Msa1462680 | 0.803118 | 4.060681e-49 | -8.615850e-47 |
| Msa0380400 | Msa1462680 | 0.825511 | 4.504413e-54 | -8.615850e-47 |
| Msa0380450 | Msa1462680 | 0.825001 | 5.946607e-54 | -8.615850e-47 |
| Msa0383870 | Msa1462680 | 0.811090 | 8.329116e-51 | -8.615850e-47 |
| Msa0388790 | Msa1462680 | 0.805638 | 1.211908e-49 | -8.615850e-47 |
| Msa0404710 | Msa1462680 | 0.805628 | 1.217824e-49 | -8.615850e-47 |
| Msa0414930 | Msa1462680 | 0.807423 | 5.092425e-50 | -8.615850e-47 |
| Msa0415160 | Msa1462680 | 0.818253 | 2.158880e-52 | -8.615850e-47 |
| Msa0415760 | Msa1462680 | 0.812588 | 3.930929e-51 | -8.615850e-47 |
| Msa0419150 | Msa1462680 | 0.801608 | 8.310431e-49 | -8.615850e-47 |
| Msa0435900 | Msa1462680 | 0.815347 | 9.683737e-52 | -8.615850e-47 |
| Msa0437820 | Msa1462680 | 0.832763 | 7.851452e-56 | -8.615850e-47 |
| Msa0439950 | Msa1462680 | 0.812314 | 4.512548e-51 | -8.615850e-47 |
| Msa0460510 | Msa1462680 | 0.815656 | 8.268689e-52 | -8.615850e-47 |
| Msa0461620 | Msa1462680 | 0.830172 | 3.410183e-55 | -8.615850e-47 |
| Msa0463030 | Msa1462680 | 0.807463 | 4.993163e-50 | -8.615850e-47 |
| Msa0476170 | Msa1462680 | 0.828039 | 1.122015e-54 | -8.615850e-47 |
| Msa0476890 | Msa1462680 | 0.827132 | 1.852500e-54 | -8.615850e-47 |
| Msa0478740 | Msa1462680 | 0.819202 | 1.314172e-52 | -8.615850e-47 |
| Msa0480090 | Msa1462680 | 0.824215 | 9.106811e-54 | -8.615850e-47 |
| Msa0982090 | Msa1462680 | 0.858330 | 8.871791e-63 | -8.615850e-47 |
| Msa0983680 | Msa1462680 | 0.802753 | 4.831704e-49 | -8.615850e-47 |
| Msa1002550 | Msa1462680 | 0.806236 | 9.071574e-50 | -8.615850e-47 |
| Msa1009940 | Msa1462680 | 0.807623 | 4.617716e-50 | -8.615850e-47 |
| Msa1016580 | Msa1462680 | 0.800043 | 1.734561e-48 | -8.615850e-47 |
| Msa1028860 | Msa1462680 | 0.816968 | 4.205906e-52 | -8.615850e-47 |
| Msa1031190 | Msa1462680 | 0.807755 | 4.328481e-50 | -8.615850e-47 |
| Msa1067980 | Msa1462680 | 0.814462 | 1.522029e-51 | -8.615850e-47 |
| Msa1070370 | Msa1462680 | 0.808890 | 2.479605e-50 | -8.615850e-47 |
| Msa1083620 | Msa1462680 | 0.802870 | 4.569688e-49 | -8.615850e-47 |
| Msa1085610 | Msa1462680 | 0.841829 | 3.748519e-58 | -8.615850e-47 |
| Msa1086320 | Msa1462680 | 0.818222 | 2.193855e-52 | -8.615850e-47 |
| Msa1086490 | Msa1462680 | 0.821021 | 5.037804e-53 | -8.615850e-47 |
| Msa1086510 | Msa1462680 | 0.810499 | 1.118430e-50 | -8.615850e-47 |
| Msa1086670 | Msa1462680 | 0.828733 | 7.631361e-55 | -8.615850e-47 |
| Msa1086840 | Msa1462680 | 0.815040 | 1.133223e-51 | -8.615850e-47 |
| Msa0260580 | Msa1462680 | 0.810029 | 1.412507e-50 | -8.615850e-47 |
| Msa0261350 | Msa1462680 | 0.808673 | 2.758646e-50 | -8.615850e-47 |
| Msa0262350 | Msa1462680 | 0.826155 | 3.168358e-54 | -8.615850e-47 |
| Msa0268210 | Msa1462680 | 0.821312 | 4.316390e-53 | -8.615850e-47 |
| Msa0268450 | Msa1462680 | 0.823540 | 1.310927e-53 | -8.615850e-47 |
| Msa0268670 | Msa1462680 | 0.821046 | 4.971614e-53 | -8.615850e-47 |
| Msa0268880 | Msa1462680 | 0.823559 | 1.297472e-53 | -8.615850e-47 |
| Msa0269090 | Msa1462680 | 0.806645 | 7.437209e-50 | -8.615850e-47 |
| Msa0274710 | Msa1462680 | 0.806827 | 6.808288e-50 | -8.615850e-47 |
| Msa0288170 | Msa1462680 | 0.814809 | 1.275007e-51 | -8.615850e-47 |
| Msa0300130 | Msa1462680 | 0.823719 | 1.190548e-53 | -8.615850e-47 |
| Msa0310270 | Msa1462680 | 0.804112 | 2.526109e-49 | -8.615850e-47 |
| Msa0310720 | Msa1462680 | 0.846642 | 1.910323e-59 | -8.615850e-47 |
| Msa0310730 | Msa1462680 | 0.860243 | 2.365845e-63 | -8.615850e-47 |
| Msa0326630 | Msa1462680 | 0.836965 | 6.869564e-57 | -8.615850e-47 |
| Msa0340700 | Msa1462680 | 0.806321 | 8.707726e-50 | -8.615850e-47 |
| Msa0363180 | Msa1462680 | 0.801758 | 7.742383e-49 | -8.615850e-47 |
| Msa1117770 | Msa1462680 | 0.817968 | 2.503796e-52 | -8.615850e-47 |
| Msa1119420 | Msa1462680 | 0.812754 | 3.615792e-51 | -8.615850e-47 |
| Msa1121720 | Msa1462680 | 0.804321 | 2.285228e-49 | -8.615850e-47 |
| Msa1128610 | Msa1462680 | 0.810086 | 1.372495e-50 | -8.615850e-47 |
| Msa1129300 | Msa1462680 | 0.858555 | 7.599882e-63 | -8.615850e-47 |
| Msa1130150 | Msa1462680 | 0.804409 | 2.190589e-49 | -8.615850e-47 |
| Msa1144380 | Msa1462680 | 0.801809 | 7.555695e-49 | -8.615850e-47 |
| Msa1156120 | Msa1462680 | 0.815511 | 8.905287e-52 | -8.615850e-47 |
| Msa1158180 | Msa1462680 | 0.808484 | 3.027174e-50 | -8.615850e-47 |
| Msa1175340 | Msa1462680 | 0.815166 | 1.062621e-51 | -8.615850e-47 |
| Msa1197740 | Msa1462680 | 0.809768 | 1.607302e-50 | -8.615850e-47 |
| Msa1212150 | Msa1462680 | 0.831374 | 1.731071e-55 | -8.615850e-47 |
| Msa1212210 | Msa1462680 | 0.828731 | 7.635798e-55 | -8.615850e-47 |
| Msa0507960 | Msa1462680 | 0.814109 | 1.821105e-51 | -8.615850e-47 |
| Msa0521260 | Msa1462680 | 0.813966 | 1.958791e-51 | -8.615850e-47 |
| Msa0522960 | Msa1462680 | 0.813618 | 2.337058e-51 | -8.615850e-47 |
| Msa0523420 | Msa1462680 | 0.800913 | 1.153223e-48 | -8.615850e-47 |
| Msa0523430 | Msa1462680 | 0.800947 | 1.134924e-48 | -8.615850e-47 |
| Msa0548650 | Msa1462680 | 0.855151 | 7.646061e-62 | -8.615850e-47 |
| Msa0550980 | Msa1462680 | 0.811734 | 6.037281e-51 | -8.615850e-47 |
| Msa0550990 | Msa1462680 | 0.829595 | 4.713298e-55 | -8.615850e-47 |
| Msa0552090 | Msa1462680 | 0.819167 | 1.338691e-52 | -8.615850e-47 |
| Msa0557440 | Msa1462680 | 0.820192 | 7.808622e-53 | -8.615850e-47 |
| Msa0576020 | Msa1462680 | 0.841405 | 4.846589e-58 | -8.615850e-47 |
| Msa0576080 | Msa1462680 | 0.832211 | 1.075664e-55 | -8.615850e-47 |
| Msa0576120 | Msa1462680 | 0.847041 | 1.485564e-59 | -8.615850e-47 |
| Msa0580890 | Msa1462680 | 0.800611 | 1.328841e-48 | -8.615850e-47 |
| Msa0582860 | Msa1462680 | 0.810654 | 1.035247e-50 | -8.615850e-47 |
| Msa0590900 | Msa1462680 | 0.829187 | 5.921517e-55 | -8.615850e-47 |
| Msa0860630 | Msa1462680 | 0.814456 | 1.526822e-51 | -8.615850e-47 |
| Msa0864820 | Msa1462680 | 0.876631 | 1.197418e-68 | -8.615850e-47 |
| Msa0866060 | Msa1462680 | 0.847183 | 1.359032e-59 | -8.615850e-47 |
| Msa0869320 | Msa1462680 | 0.813224 | 2.852470e-51 | -8.615850e-47 |
| Msa0869420 | Msa1462680 | 0.820308 | 7.347696e-53 | -8.615850e-47 |
| Msa0881530 | Msa1462680 | 0.868500 | 6.234853e-66 | -8.615850e-47 |
| Msa0888520 | Msa1462680 | 0.814118 | 1.812964e-51 | -8.615850e-47 |
| Msa0919120 | Msa1462680 | 0.815714 | 8.025768e-52 | -8.615850e-47 |
| Msa0945160 | Msa1462680 | 0.819589 | 1.072790e-52 | -8.615850e-47 |
| Msa0971690 | Msa1462680 | 0.831311 | 1.793830e-55 | -8.615850e-47 |
| Msa0974470 | Msa1462680 | 0.813629 | 2.323468e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1462680 | MtrunA17_Chr3g0145501 | 97.861 | 187 | 3 | 1 | 14 | 199 | 5 | 191 | 1.08e-133 | 372 |
| Msa1462680 | MtrunA17_Chr4g0038431 | 86.471 | 170 | 23 | 0 | 20 | 189 | 3 | 172 | 9.86e-110 | 311 |
| Msa1462680 | MtrunA17_Chr7g0274841 | 75.882 | 170 | 41 | 0 | 20 | 189 | 3 | 172 | 2.18e-96 | 277 |
| Msa1462680 | MtrunA17_Chr3g0113441 | 62.778 | 180 | 67 | 0 | 10 | 189 | 53 | 232 | 1.47e-79 | 237 |
| Msa1462680 | MtrunA17_Chr3g0104751 | 67.665 | 167 | 54 | 0 | 22 | 188 | 35 | 201 | 2.15e-79 | 235 |
| Msa1462680 | MtrunA17_Chr7g0260441 | 63.743 | 171 | 61 | 1 | 20 | 189 | 6 | 176 | 7.30e-75 | 237 |
| Msa1462680 | MtrunA17_Chr8g0374621 | 58.757 | 177 | 71 | 2 | 19 | 193 | 2 | 178 | 6.34e-68 | 211 |
| Msa1462680 | MtrunA17_Chr1g0213971 | 60.819 | 171 | 56 | 3 | 22 | 188 | 78 | 241 | 3.21e-67 | 206 |
| Msa1462680 | MtrunA17_Chr1g0193711 | 59.036 | 166 | 61 | 1 | 2 | 167 | 66 | 224 | 2.00e-66 | 204 |
| Msa1462680 | MtrunA17_Chr8g0353571 | 58.857 | 175 | 67 | 4 | 17 | 188 | 13 | 185 | 2.25e-66 | 202 |
| Msa1462680 | MtrunA17_Chr7g0270991 | 58.523 | 176 | 55 | 3 | 22 | 191 | 97 | 260 | 5.33e-66 | 203 |
| Msa1462680 | MtrunA17_Chr4g0045321 | 57.386 | 176 | 69 | 3 | 22 | 193 | 5 | 178 | 1.03e-63 | 201 |
| Msa1462680 | MtrunA17_Chr4g0037281 | 53.448 | 174 | 79 | 2 | 17 | 188 | 42 | 215 | 1.60e-58 | 183 |
| Msa1462680 | MtrunA17_Chr3g0138061 | 51.445 | 173 | 83 | 1 | 20 | 191 | 9 | 181 | 5.55e-51 | 176 |
| Msa1462680 | MtrunA17_Chr1g0149061 | 48.555 | 173 | 87 | 2 | 20 | 191 | 6 | 177 | 1.35e-43 | 154 |
| Msa1462680 | MtrunA17_Chr2g0321111 | 52.027 | 148 | 55 | 5 | 34 | 179 | 470 | 603 | 2.94e-35 | 130 |
| Msa1462680 | MtrunA17_Chr7g0266721 | 50.360 | 139 | 53 | 4 | 34 | 169 | 18 | 143 | 6.84e-35 | 121 |
| Msa1462680 | MtrunA17_Chr8g0351571 | 48.611 | 144 | 58 | 5 | 34 | 174 | 9 | 139 | 3.96e-33 | 116 |
| Msa1462680 | MtrunA17_Chr5g0401141 | 48.529 | 136 | 58 | 4 | 35 | 169 | 354 | 478 | 2.93e-28 | 110 |
| Msa1462680 | MtrunA17_Chr6g0484281 | 38.824 | 170 | 83 | 6 | 34 | 193 | 9 | 167 | 1.38e-22 | 94.7 |
| Msa1462680 | MtrunA17_Chr8g0357591 | 38.235 | 170 | 84 | 6 | 34 | 193 | 9 | 167 | 2.39e-21 | 90.9 |
| Msa1462680 | MtrunA17_Chr3g0122871 | 59.677 | 62 | 25 | 0 | 113 | 174 | 55 | 116 | 2.98e-21 | 84.7 |
| Msa1462680 | MtrunA17_Chr2g0288371 | 42.400 | 125 | 59 | 5 | 35 | 157 | 22 | 135 | 7.41e-18 | 80.9 |
| Msa1462680 | MtrunA17_Chr1g0199071 | 35.897 | 156 | 66 | 7 | 35 | 181 | 89 | 219 | 2.17e-14 | 69.3 |
| Msa1462680 | MtrunA17_Chr1g0163031 | 29.299 | 157 | 93 | 5 | 35 | 188 | 88 | 229 | 1.34e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1462680 | AT2G16600.1 | 83.529 | 170 | 28 | 0 | 20 | 189 | 4 | 173 | 8.23e-106 | 301 |
| Msa1462680 | AT4G38740.1 | 80.473 | 169 | 33 | 0 | 21 | 189 | 4 | 172 | 2.59e-101 | 290 |
| Msa1462680 | AT2G21130.1 | 78.824 | 170 | 36 | 0 | 20 | 189 | 4 | 173 | 2.74e-100 | 287 |
| Msa1462680 | AT4G34870.1 | 79.412 | 170 | 35 | 0 | 20 | 189 | 3 | 172 | 2.05e-99 | 285 |
| Msa1462680 | AT3G56070.1 | 72.515 | 171 | 47 | 0 | 20 | 190 | 3 | 173 | 1.73e-90 | 263 |
| Msa1462680 | AT3G56070.2 | 72.515 | 171 | 47 | 0 | 20 | 190 | 3 | 173 | 1.73e-90 | 263 |
| Msa1462680 | AT2G16600.2 | 71.765 | 170 | 26 | 1 | 20 | 189 | 4 | 151 | 1.03e-83 | 244 |
| Msa1462680 | AT2G29960.1 | 62.431 | 181 | 68 | 0 | 8 | 188 | 19 | 199 | 1.40e-78 | 233 |
| Msa1462680 | AT2G29960.3 | 62.431 | 181 | 68 | 0 | 8 | 188 | 19 | 199 | 1.40e-78 | 233 |
| Msa1462680 | AT3G63400.2 | 66.667 | 171 | 56 | 1 | 20 | 189 | 6 | 176 | 1.03e-76 | 235 |
| Msa1462680 | AT5G58710.1 | 65.868 | 167 | 57 | 0 | 22 | 188 | 36 | 202 | 2.39e-76 | 228 |
| Msa1462680 | AT3G63400.3 | 66.667 | 171 | 56 | 1 | 20 | 189 | 6 | 176 | 4.11e-75 | 236 |
| Msa1462680 | AT3G63400.4 | 66.667 | 171 | 56 | 1 | 20 | 189 | 6 | 176 | 4.11e-75 | 236 |
| Msa1462680 | AT3G63400.1 | 66.667 | 171 | 56 | 1 | 20 | 189 | 6 | 176 | 4.11e-75 | 236 |
| Msa1462680 | AT5G13120.2 | 63.736 | 182 | 53 | 4 | 12 | 188 | 77 | 250 | 3.85e-74 | 224 |
| Msa1462680 | AT5G13120.1 | 63.736 | 182 | 53 | 4 | 12 | 188 | 81 | 254 | 6.33e-74 | 224 |
| Msa1462680 | AT3G55920.1 | 61.905 | 168 | 64 | 0 | 22 | 189 | 60 | 227 | 4.91e-73 | 220 |
| Msa1462680 | AT2G29960.2 | 58.011 | 181 | 66 | 1 | 8 | 188 | 19 | 189 | 2.17e-69 | 210 |
| Msa1462680 | AT3G62030.3 | 56.684 | 187 | 73 | 2 | 6 | 191 | 79 | 258 | 4.60e-69 | 211 |
| Msa1462680 | AT3G62030.1 | 58.989 | 178 | 65 | 2 | 15 | 191 | 89 | 259 | 1.46e-68 | 210 |
| Msa1462680 | AT3G62030.2 | 58.989 | 178 | 65 | 2 | 15 | 191 | 142 | 312 | 5.44e-68 | 211 |
| Msa1462680 | AT2G15790.1 | 60.920 | 174 | 66 | 2 | 22 | 193 | 5 | 178 | 6.39e-65 | 204 |
| Msa1462680 | AT2G38730.1 | 58.857 | 175 | 67 | 4 | 17 | 188 | 27 | 199 | 1.09e-64 | 198 |
| Msa1462680 | AT4G34960.1 | 54.070 | 172 | 78 | 1 | 22 | 192 | 48 | 219 | 2.34e-60 | 188 |
| Msa1462680 | AT3G22920.1 | 53.143 | 175 | 70 | 5 | 20 | 190 | 3 | 169 | 4.95e-54 | 172 |
| Msa1462680 | AT4G34960.2 | 55.645 | 124 | 55 | 0 | 22 | 145 | 48 | 171 | 1.11e-45 | 149 |
| Msa1462680 | AT4G32420.1 | 47.929 | 169 | 87 | 1 | 20 | 187 | 6 | 174 | 6.71e-45 | 159 |
| Msa1462680 | AT4G32420.5 | 47.929 | 169 | 87 | 1 | 20 | 187 | 6 | 174 | 6.71e-45 | 159 |
| Msa1462680 | AT4G32420.3 | 47.929 | 169 | 87 | 1 | 20 | 187 | 6 | 174 | 6.71e-45 | 159 |
| Msa1462680 | AT4G32420.6 | 47.929 | 169 | 87 | 1 | 20 | 187 | 6 | 174 | 6.71e-45 | 159 |
| Msa1462680 | AT4G32420.4 | 48.408 | 157 | 80 | 1 | 20 | 175 | 6 | 162 | 2.01e-41 | 149 |
| Msa1462680 | AT2G36130.1 | 48.649 | 148 | 62 | 5 | 34 | 180 | 18 | 152 | 3.13e-36 | 124 |
| Msa1462680 | AT3G44600.1 | 51.429 | 140 | 54 | 4 | 34 | 171 | 484 | 611 | 7.94e-34 | 127 |
| Msa1462680 | AT1G01940.1 | 48.252 | 143 | 60 | 5 | 34 | 174 | 9 | 139 | 8.33e-33 | 115 |
| Msa1462680 | AT5G67530.1 | 45.806 | 155 | 65 | 6 | 18 | 169 | 339 | 477 | 8.64e-28 | 109 |
| Msa1462680 | AT4G33060.1 | 45.600 | 125 | 55 | 5 | 35 | 157 | 22 | 135 | 1.17e-24 | 100 |
| Msa1462680 | AT1G53720.2 | 38.028 | 142 | 68 | 5 | 34 | 166 | 9 | 139 | 1.65e-20 | 87.8 |
| Msa1462680 | AT1G53720.1 | 38.028 | 142 | 68 | 5 | 34 | 166 | 9 | 139 | 2.33e-20 | 88.6 |
Find 82 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAATTCTCGTCGGCGAATT+TGG | 0.117790 | tig0042503:-1869 | Msa1462680:intergenic |
| GGGGATGGGGTTAGACATTT+TGG | 0.185894 | tig0042503:-1584 | Msa1462680:intergenic |
| TGGGATTGGGGTTGGGGATG+GGG | 0.189257 | tig0042503:-1597 | Msa1462680:intergenic |
| TTGGGATTGGGGTTGGGGAT+GGG | 0.254630 | tig0042503:-1598 | Msa1462680:intergenic |
| AGACTTTGGGATTGGGGTTG+GGG | 0.279401 | tig0042503:-1603 | Msa1462680:intergenic |
| AAGACTTTGGGATTGGGGTT+GGG | 0.281079 | tig0042503:-1604 | Msa1462680:intergenic |
| GAGAAAGTTGGGTCCGGTTC+GGG | 0.294795 | tig0042503:+2054 | Msa1462680:CDS |
| TTTGGGATTGGGGTTGGGGA+TGG | 0.340234 | tig0042503:-1599 | Msa1462680:intergenic |
| CTCTCCACCGGTACCATTAC+CGG | 0.380312 | tig0042503:-1833 | Msa1462680:intergenic |
| GGCGAATTTGGACCCGTAGA+TGG | 0.381308 | tig0042503:-1857 | Msa1462680:intergenic |
| TCGAAGAAGACTTTGGGATT+GGG | 0.389727 | tig0042503:-1610 | Msa1462680:intergenic |
| GAAGACTTTGGGATTGGGGT+TGG | 0.396057 | tig0042503:-1605 | Msa1462680:intergenic |
| TGAGAAAGTTGGGTCCGGTT+CGG | 0.405741 | tig0042503:+2053 | Msa1462680:CDS |
| GTGAAAGAGATTGAGAAAGT+TGG | 0.416986 | tig0042503:+2042 | Msa1462680:CDS |
| ATGGTAGCTATATATGTTGT+TGG | 0.423422 | tig0042503:-2140 | Msa1462680:intergenic |
| GTCGAAGAAGACTTTGGGAT+TGG | 0.424528 | tig0042503:-1611 | Msa1462680:intergenic |
| GTCATGTCGAAGAAGACTTT+GGG | 0.428350 | tig0042503:-1616 | Msa1462680:intergenic |
| GCAGAGTGCACGGAAGTTAT+CGG | 0.432521 | tig0042503:-1704 | Msa1462680:intergenic |
| TGGTGAGGTGGTTGAAGGAA+TGG | 0.433417 | tig0042503:+2014 | Msa1462680:CDS |
| GCGAAGACGGAGTGGCTTGA+TGG | 0.435031 | tig0042503:+1976 | Msa1462680:CDS |
| CGAAGAAGACTTTGGGATTG+GGG | 0.456798 | tig0042503:-1609 | Msa1462680:intergenic |
| CCTCCTTGACACATGAAATC+AGG | 0.460761 | tig0042503:-1799 | Msa1462680:intergenic |
| GGTCATGTCGAAGAAGACTT+TGG | 0.463837 | tig0042503:-1617 | Msa1462680:intergenic |
| GCACTCTGCACCGGGGAGAA+AGG | 0.471854 | tig0042503:+1718 | Msa1462680:CDS |
| ACCGGTGGAGAGTCCATCTA+CGG | 0.473790 | tig0042503:+1844 | Msa1462680:CDS |
| AACTTCCGTGCACTCTGCAC+CGG | 0.478449 | tig0042503:+1709 | Msa1462680:CDS |
| AGGTCCAGGTGTTCTTTCAA+TGG | 0.486279 | tig0042503:+1906 | Msa1462680:CDS |
| CTTCATATGCACGGCGAAGA+CGG | 0.491522 | tig0042503:+1963 | Msa1462680:CDS |
| TGAAAGAGATTGAGAAAGTT+GGG | 0.494450 | tig0042503:+2043 | Msa1462680:CDS |
| GTTCTTTCAATGGCGAATGC+GGG | 0.507071 | tig0042503:+1916 | Msa1462680:CDS |
| CGAAGACGGAGTGGCTTGAT+GGG | 0.510239 | tig0042503:+1977 | Msa1462680:CDS |
| GGTGACTTCACCGCCGGTAA+TGG | 0.512626 | tig0042503:+1820 | Msa1462680:CDS |
| GATCATTATCATCAGAGAGT+TGG | 0.513860 | tig0042503:-2113 | Msa1462680:intergenic |
| ATCAAGACCCACACAGGTCC+AGG | 0.524358 | tig0042503:+1892 | Msa1462680:CDS |
| CATGACCGTCGGAGACGAAC+CGG | 0.524784 | tig0042503:+1633 | Msa1462680:CDS |
| ACTTCCGTGCACTCTGCACC+GGG | 0.526298 | tig0042503:+1710 | Msa1462680:CDS |
| GGAAGATAGAGCCTTTGTAA+TGG | 0.527764 | tig0042503:-1765 | Msa1462680:intergenic |
| GAGATTGAGAAAGTTGGGTC+CGG | 0.536951 | tig0042503:+2048 | Msa1462680:CDS |
| TTCGCCATTGAAAGAACACC+TGG | 0.544494 | tig0042503:-1910 | Msa1462680:intergenic |
| TCTCCCCGGTGCAGAGTGCA+CGG | 0.546941 | tig0042503:-1714 | Msa1462680:intergenic |
| GAACTGTGATCCATTCGTAC+CGG | 0.549331 | tig0042503:-1941 | Msa1462680:intergenic |
| AACTGTGATCCATTCGTACC+GGG | 0.549830 | tig0042503:-1940 | Msa1462680:intergenic |
| AATGCGGGACCCGGTACGAA+TGG | 0.554826 | tig0042503:+1931 | Msa1462680:CDS |
| TGTTCTTTCAATGGCGAATG+CGG | 0.558234 | tig0042503:+1915 | Msa1462680:CDS |
| TTCACCGCCGGTAATGGTAC+CGG | 0.561434 | tig0042503:+1826 | Msa1462680:CDS |
| GTCTTCTTCGACATGACCGT+CGG | 0.574777 | tig0042503:+1622 | Msa1462680:CDS |
| GGCGGTGAGAGGAGTGGTGT+CGG | 0.577204 | tig0042503:-1683 | Msa1462680:intergenic |
| TCAATGGCGAATGCGGGACC+CGG | 0.581965 | tig0042503:+1922 | Msa1462680:CDS |
| TCCGACCGGTTCGTCTCCGA+CGG | 0.586188 | tig0042503:-1638 | Msa1462680:intergenic |
| GGTGGTTGAAGGAATGGAGG+TGG | 0.586389 | tig0042503:+2020 | Msa1462680:CDS |
| CCGCAGTCAGCAATAACCAC+CGG | 0.587692 | tig0042503:-2090 | Msa1462680:intergenic |
| TTCGGGGAAAACATCAAAGC+CGG | 0.592489 | tig0042503:+2071 | Msa1462680:CDS |
| CGGAAGTTATCGGCGGTGAG+AGG | 0.605286 | tig0042503:-1694 | Msa1462680:intergenic |
| AGAAAGTTGGGTCCGGTTCG+GGG | 0.607170 | tig0042503:+2055 | Msa1462680:CDS |
| ATAGAGCCTTTGTAATGGAG+AGG | 0.607462 | tig0042503:-1760 | Msa1462680:intergenic |
| CCCGTAGATGGACTCTCCAC+CGG | 0.607666 | tig0042503:-1845 | Msa1462680:intergenic |
| GCTACCGAGTCCTTTCTCCC+CGG | 0.607787 | tig0042503:-1728 | Msa1462680:intergenic |
| ATACCTGATTTCATGTGTCA+AGG | 0.608102 | tig0042503:+1796 | Msa1462680:CDS |
| ATCACAGTTCTTCATATGCA+CGG | 0.610600 | tig0042503:+1954 | Msa1462680:CDS |
| TGAGGTGGTTGAAGGAATGG+AGG | 0.611761 | tig0042503:+2017 | Msa1462680:CDS |
| GAGAAAGGACTCGGTAGCAG+TGG | 0.612151 | tig0042503:+1733 | Msa1462680:CDS |
| CAAGGAGGTGACTTCACCGC+CGG | 0.614495 | tig0042503:+1814 | Msa1462680:CDS |
| ACCGCCGGTAATGGTACCGG+TGG | 0.624217 | tig0042503:+1829 | Msa1462680:CDS |
| CCGGTGGAGAGTCCATCTAC+GGG | 0.638547 | tig0042503:+1845 | Msa1462680:CDS |
| AAGAACACCTGGACCTGTGT+GGG | 0.644240 | tig0042503:-1899 | Msa1462680:intergenic |
| TCCATGACGATACGTCCGAC+CGG | 0.645610 | tig0042503:-1652 | Msa1462680:intergenic |
| AATTTCATCAAGACCCACAC+AGG | 0.645692 | tig0042503:+1886 | Msa1462680:CDS |
| GGCAAGCCTCTCCATTACAA+AGG | 0.646729 | tig0042503:+1754 | Msa1462680:CDS |
| TGCACCGGGGAGAAAGGACT+CGG | 0.648211 | tig0042503:+1724 | Msa1462680:CDS |
| GGTCTTGATGAAATTCTCGT+CGG | 0.653249 | tig0042503:-1878 | Msa1462680:intergenic |
| CCTGATTTCATGTGTCAAGG+AGG | 0.663642 | tig0042503:+1799 | Msa1462680:CDS |
| GTTATCGGCGGTGAGAGGAG+TGG | 0.666243 | tig0042503:-1689 | Msa1462680:intergenic |
| TATGCACGGCGAAGACGGAG+TGG | 0.669618 | tig0042503:+1968 | Msa1462680:CDS |
| TGAAATCAGGTATGACGCGG+TGG | 0.671849 | tig0042503:-1786 | Msa1462680:intergenic |
| GGGGAAAACATCAAAGCCGG+TGG | 0.686265 | tig0042503:+2074 | Msa1462680:CDS |
| CCGGTGGTTATTGCTGACTG+CGG | 0.692364 | tig0042503:+2090 | Msa1462680:CDS |
| GTGGCTTGATGGGAAACATG+TGG | 0.698636 | tig0042503:+1987 | Msa1462680:CDS |
| ACCGTCGGAGACGAACCGGT+CGG | 0.705667 | tig0042503:+1637 | Msa1462680:CDS |
| TCCACCGGTACCATTACCGG+CGG | 0.707753 | tig0042503:-1830 | Msa1462680:intergenic |
| AAAGAACACCTGGACCTGTG+TGG | 0.718700 | tig0042503:-1900 | Msa1462680:intergenic |
| ACATGAAATCAGGTATGACG+CGG | 0.735409 | tig0042503:-1789 | Msa1462680:intergenic |
| CTTCCGTGCACTCTGCACCG+GGG | 0.766706 | tig0042503:+1711 | Msa1462680:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | CTTCTTCTTCTCTAAATTAT+AGG | + | tig0042503:1538-1557 | Msa1462680:intron | 25.0% |
| ! | CTTCTTCTTCTCTAAATTAT+AGG | + | tig0042503:1538-1557 | Msa1462680:intron | 25.0% |
| GAGTTTATTGAGTAGGATTT+GGG | - | tig0042503:1488-1507 | Msa1462680:intergenic | 30.0% | |
| TGAGTTTATTGAGTAGGATT+TGG | - | tig0042503:1489-1508 | Msa1462680:intergenic | 30.0% | |
| TGTTAGTGAGTTTATTGAGT+AGG | - | tig0042503:1495-1514 | Msa1462680:intergenic | 30.0% | |
| TGAAAGAGATTGAGAAAGTT+GGG | + | tig0042503:2043-2062 | Msa1462680:CDS | 30.0% | |
| GAGTTTATTGAGTAGGATTT+GGG | - | tig0042503:1488-1507 | Msa1462680:intergenic | 30.0% | |
| TGAGTTTATTGAGTAGGATT+TGG | - | tig0042503:1489-1508 | Msa1462680:intergenic | 30.0% | |
| TGTTAGTGAGTTTATTGAGT+AGG | - | tig0042503:1495-1514 | Msa1462680:intergenic | 30.0% | |
| TGAAAGAGATTGAGAAAGTT+GGG | + | tig0042503:2043-2062 | Msa1462680:CDS | 30.0% | |
| TATATGCTTGGAATCAGATC+CGG | + | tig0042503:1411-1430 | Msa1462680:intron | 35.0% | |
| AGAGAAGAAGAAGAAGATGA+AGG | - | tig0042503:1531-1550 | Msa1462680:intergenic | 35.0% | |
| ATACCTGATTTCATGTGTCA+AGG | + | tig0042503:1796-1815 | Msa1462680:CDS | 35.0% | |
| ATCACAGTTCTTCATATGCA+CGG | + | tig0042503:1954-1973 | Msa1462680:CDS | 35.0% | |
| GTGAAAGAGATTGAGAAAGT+TGG | + | tig0042503:2042-2061 | Msa1462680:CDS | 35.0% | |
| GATCATTATCATCAGAGAGT+TGG | - | tig0042503:2116-2135 | Msa1462680:intergenic | 35.0% | |
| TATATGCTTGGAATCAGATC+CGG | + | tig0042503:1411-1430 | Msa1462680:intron | 35.0% | |
| AGAGAAGAAGAAGAAGATGA+AGG | - | tig0042503:1531-1550 | Msa1462680:intergenic | 35.0% | |
| ATACCTGATTTCATGTGTCA+AGG | + | tig0042503:1796-1815 | Msa1462680:CDS | 35.0% | |
| ATCACAGTTCTTCATATGCA+CGG | + | tig0042503:1954-1973 | Msa1462680:CDS | 35.0% | |
| GTGAAAGAGATTGAGAAAGT+TGG | + | tig0042503:2042-2061 | Msa1462680:CDS | 35.0% | |
| GATCATTATCATCAGAGAGT+TGG | - | tig0042503:2116-2135 | Msa1462680:intergenic | 35.0% | |
| TGCACTACCATGCATTATTG+AGG | - | tig0042503:1437-1456 | Msa1462680:intergenic | 40.0% | |
| !! | GTTAGACATTTTGGTACGAG+CGG | - | tig0042503:1578-1597 | Msa1462680:intergenic | 40.0% |
| !! | TCGAAGAAGACTTTGGGATT+GGG | - | tig0042503:1613-1632 | Msa1462680:intergenic | 40.0% |
| GTCATGTCGAAGAAGACTTT+GGG | - | tig0042503:1619-1638 | Msa1462680:intergenic | 40.0% | |
| ! | ATAGAGCCTTTGTAATGGAG+AGG | - | tig0042503:1763-1782 | Msa1462680:intergenic | 40.0% |
| GGAAGATAGAGCCTTTGTAA+TGG | - | tig0042503:1768-1787 | Msa1462680:intergenic | 40.0% | |
| ACATGAAATCAGGTATGACG+CGG | - | tig0042503:1792-1811 | Msa1462680:intergenic | 40.0% | |
| GGTCTTGATGAAATTCTCGT+CGG | - | tig0042503:1881-1900 | Msa1462680:intergenic | 40.0% | |
| AATTTCATCAAGACCCACAC+AGG | + | tig0042503:1886-1905 | Msa1462680:CDS | 40.0% | |
| TGTTCTTTCAATGGCGAATG+CGG | + | tig0042503:1915-1934 | Msa1462680:CDS | 40.0% | |
| ! | GATGGGAAACATGTGGTTTT+TGG | + | tig0042503:1994-2013 | Msa1462680:CDS | 40.0% |
| !!! | GAAACATGTGGTTTTTGGTG+AGG | + | tig0042503:1999-2018 | Msa1462680:CDS | 40.0% |
| TGCACTACCATGCATTATTG+AGG | - | tig0042503:1437-1456 | Msa1462680:intergenic | 40.0% | |
| !! | GTTAGACATTTTGGTACGAG+CGG | - | tig0042503:1578-1597 | Msa1462680:intergenic | 40.0% |
| !! | TCGAAGAAGACTTTGGGATT+GGG | - | tig0042503:1613-1632 | Msa1462680:intergenic | 40.0% |
| GTCATGTCGAAGAAGACTTT+GGG | - | tig0042503:1619-1638 | Msa1462680:intergenic | 40.0% | |
| ! | ATAGAGCCTTTGTAATGGAG+AGG | - | tig0042503:1763-1782 | Msa1462680:intergenic | 40.0% |
| GGAAGATAGAGCCTTTGTAA+TGG | - | tig0042503:1768-1787 | Msa1462680:intergenic | 40.0% | |
| ACATGAAATCAGGTATGACG+CGG | - | tig0042503:1792-1811 | Msa1462680:intergenic | 40.0% | |
| GGTCTTGATGAAATTCTCGT+CGG | - | tig0042503:1881-1900 | Msa1462680:intergenic | 40.0% | |
| AATTTCATCAAGACCCACAC+AGG | + | tig0042503:1886-1905 | Msa1462680:CDS | 40.0% | |
| TGTTCTTTCAATGGCGAATG+CGG | + | tig0042503:1915-1934 | Msa1462680:CDS | 40.0% | |
| ! | GATGGGAAACATGTGGTTTT+TGG | + | tig0042503:1994-2013 | Msa1462680:CDS | 40.0% |
| !!! | GAAACATGTGGTTTTTGGTG+AGG | + | tig0042503:1999-2018 | Msa1462680:CDS | 40.0% |
| CTACCATGCATTATTGAGGC+CGG | - | tig0042503:1433-1452 | Msa1462680:intergenic | 45.0% | |
| !! | AAGACTTTGGGATTGGGGTT+GGG | - | tig0042503:1607-1626 | Msa1462680:intergenic | 45.0% |
| !! | CGAAGAAGACTTTGGGATTG+GGG | - | tig0042503:1612-1631 | Msa1462680:intergenic | 45.0% |
| !! | GTCGAAGAAGACTTTGGGAT+TGG | - | tig0042503:1614-1633 | Msa1462680:intergenic | 45.0% |
| GGTCATGTCGAAGAAGACTT+TGG | - | tig0042503:1620-1639 | Msa1462680:intergenic | 45.0% | |
| CCTCCTTGACACATGAAATC+AGG | - | tig0042503:1802-1821 | Msa1462680:intergenic | 45.0% | |
| CCTGATTTCATGTGTCAAGG+AGG | + | tig0042503:1799-1818 | Msa1462680:CDS | 45.0% | |
| GAAATTCTCGTCGGCGAATT+TGG | - | tig0042503:1872-1891 | Msa1462680:intergenic | 45.0% | |
| AGGTCCAGGTGTTCTTTCAA+TGG | + | tig0042503:1906-1925 | Msa1462680:CDS | 45.0% | |
| TTCGCCATTGAAAGAACACC+TGG | - | tig0042503:1913-1932 | Msa1462680:intergenic | 45.0% | |
| GTTCTTTCAATGGCGAATGC+GGG | + | tig0042503:1916-1935 | Msa1462680:CDS | 45.0% | |
| AACTGTGATCCATTCGTACC+GGG | - | tig0042503:1943-1962 | Msa1462680:intergenic | 45.0% | |
| GAACTGTGATCCATTCGTAC+CGG | - | tig0042503:1944-1963 | Msa1462680:intergenic | 45.0% | |
| !!! | ACATGTGGTTTTTGGTGAGG+TGG | + | tig0042503:2002-2021 | Msa1462680:CDS | 45.0% |
| !!! | GTTTTTGGTGAGGTGGTTGA+AGG | + | tig0042503:2009-2028 | Msa1462680:CDS | 45.0% |
| GAGATTGAGAAAGTTGGGTC+CGG | + | tig0042503:2048-2067 | Msa1462680:CDS | 45.0% | |
| ! | CTTTGATGTTTTCCCCGAAC+CGG | - | tig0042503:2070-2089 | Msa1462680:intergenic | 45.0% |
| TTCGGGGAAAACATCAAAGC+CGG | + | tig0042503:2071-2090 | Msa1462680:CDS | 45.0% | |
| CTACCATGCATTATTGAGGC+CGG | - | tig0042503:1433-1452 | Msa1462680:intergenic | 45.0% | |
| !! | AAGACTTTGGGATTGGGGTT+GGG | - | tig0042503:1607-1626 | Msa1462680:intergenic | 45.0% |
| !! | CGAAGAAGACTTTGGGATTG+GGG | - | tig0042503:1612-1631 | Msa1462680:intergenic | 45.0% |
| !! | GTCGAAGAAGACTTTGGGAT+TGG | - | tig0042503:1614-1633 | Msa1462680:intergenic | 45.0% |
| GGTCATGTCGAAGAAGACTT+TGG | - | tig0042503:1620-1639 | Msa1462680:intergenic | 45.0% | |
| CCTCCTTGACACATGAAATC+AGG | - | tig0042503:1802-1821 | Msa1462680:intergenic | 45.0% | |
| CCTGATTTCATGTGTCAAGG+AGG | + | tig0042503:1799-1818 | Msa1462680:CDS | 45.0% | |
| GAAATTCTCGTCGGCGAATT+TGG | - | tig0042503:1872-1891 | Msa1462680:intergenic | 45.0% | |
| AGGTCCAGGTGTTCTTTCAA+TGG | + | tig0042503:1906-1925 | Msa1462680:CDS | 45.0% | |
| TTCGCCATTGAAAGAACACC+TGG | - | tig0042503:1913-1932 | Msa1462680:intergenic | 45.0% | |
| GTTCTTTCAATGGCGAATGC+GGG | + | tig0042503:1916-1935 | Msa1462680:CDS | 45.0% | |
| AACTGTGATCCATTCGTACC+GGG | - | tig0042503:1943-1962 | Msa1462680:intergenic | 45.0% | |
| GAACTGTGATCCATTCGTAC+CGG | - | tig0042503:1944-1963 | Msa1462680:intergenic | 45.0% | |
| !!! | ACATGTGGTTTTTGGTGAGG+TGG | + | tig0042503:2002-2021 | Msa1462680:CDS | 45.0% |
| !!! | GTTTTTGGTGAGGTGGTTGA+AGG | + | tig0042503:2009-2028 | Msa1462680:CDS | 45.0% |
| GAGATTGAGAAAGTTGGGTC+CGG | + | tig0042503:2048-2067 | Msa1462680:CDS | 45.0% | |
| ! | CTTTGATGTTTTCCCCGAAC+CGG | - | tig0042503:2070-2089 | Msa1462680:intergenic | 45.0% |
| TTCGGGGAAAACATCAAAGC+CGG | + | tig0042503:2071-2090 | Msa1462680:CDS | 45.0% | |
| GATCCGGCCTCAATAATGCA+TGG | + | tig0042503:1427-1446 | Msa1462680:intron | 50.0% | |
| ! | GGGGATGGGGTTAGACATTT+TGG | - | tig0042503:1587-1606 | Msa1462680:intergenic | 50.0% |
| !! | AGACTTTGGGATTGGGGTTG+GGG | - | tig0042503:1606-1625 | Msa1462680:intergenic | 50.0% |
| !! | GAAGACTTTGGGATTGGGGT+TGG | - | tig0042503:1608-1627 | Msa1462680:intergenic | 50.0% |
| GTCTTCTTCGACATGACCGT+CGG | + | tig0042503:1622-1641 | Msa1462680:CDS | 50.0% | |
| GCAGAGTGCACGGAAGTTAT+CGG | - | tig0042503:1707-1726 | Msa1462680:intergenic | 50.0% | |
| GGCAAGCCTCTCCATTACAA+AGG | + | tig0042503:1754-1773 | Msa1462680:CDS | 50.0% | |
| TGAAATCAGGTATGACGCGG+TGG | - | tig0042503:1789-1808 | Msa1462680:intergenic | 50.0% | |
| AAGAACACCTGGACCTGTGT+GGG | - | tig0042503:1902-1921 | Msa1462680:intergenic | 50.0% | |
| AAAGAACACCTGGACCTGTG+TGG | - | tig0042503:1903-1922 | Msa1462680:intergenic | 50.0% | |
| CTTCATATGCACGGCGAAGA+CGG | + | tig0042503:1963-1982 | Msa1462680:CDS | 50.0% | |
| GTGGCTTGATGGGAAACATG+TGG | + | tig0042503:1987-2006 | Msa1462680:CDS | 50.0% | |
| TGGTGAGGTGGTTGAAGGAA+TGG | + | tig0042503:2014-2033 | Msa1462680:CDS | 50.0% | |
| TGAGGTGGTTGAAGGAATGG+AGG | + | tig0042503:2017-2036 | Msa1462680:CDS | 50.0% | |
| TGAGAAAGTTGGGTCCGGTT+CGG | + | tig0042503:2053-2072 | Msa1462680:CDS | 50.0% | |
| GATCCGGCCTCAATAATGCA+TGG | + | tig0042503:1427-1446 | Msa1462680:intron | 50.0% | |
| ! | GGGGATGGGGTTAGACATTT+TGG | - | tig0042503:1587-1606 | Msa1462680:intergenic | 50.0% |
| !! | AGACTTTGGGATTGGGGTTG+GGG | - | tig0042503:1606-1625 | Msa1462680:intergenic | 50.0% |
| !! | GAAGACTTTGGGATTGGGGT+TGG | - | tig0042503:1608-1627 | Msa1462680:intergenic | 50.0% |
| GTCTTCTTCGACATGACCGT+CGG | + | tig0042503:1622-1641 | Msa1462680:CDS | 50.0% | |
| GCAGAGTGCACGGAAGTTAT+CGG | - | tig0042503:1707-1726 | Msa1462680:intergenic | 50.0% | |
| GGCAAGCCTCTCCATTACAA+AGG | + | tig0042503:1754-1773 | Msa1462680:CDS | 50.0% | |
| TGAAATCAGGTATGACGCGG+TGG | - | tig0042503:1789-1808 | Msa1462680:intergenic | 50.0% | |
| AAGAACACCTGGACCTGTGT+GGG | - | tig0042503:1902-1921 | Msa1462680:intergenic | 50.0% | |
| AAAGAACACCTGGACCTGTG+TGG | - | tig0042503:1903-1922 | Msa1462680:intergenic | 50.0% | |
| CTTCATATGCACGGCGAAGA+CGG | + | tig0042503:1963-1982 | Msa1462680:CDS | 50.0% | |
| GTGGCTTGATGGGAAACATG+TGG | + | tig0042503:1987-2006 | Msa1462680:CDS | 50.0% | |
| TGGTGAGGTGGTTGAAGGAA+TGG | + | tig0042503:2014-2033 | Msa1462680:CDS | 50.0% | |
| TGAGGTGGTTGAAGGAATGG+AGG | + | tig0042503:2017-2036 | Msa1462680:CDS | 50.0% | |
| TGAGAAAGTTGGGTCCGGTT+CGG | + | tig0042503:2053-2072 | Msa1462680:CDS | 50.0% | |
| TTGGGATTGGGGTTGGGGAT+GGG | - | tig0042503:1601-1620 | Msa1462680:intergenic | 55.0% | |
| ! | TTTGGGATTGGGGTTGGGGA+TGG | - | tig0042503:1602-1621 | Msa1462680:intergenic | 55.0% |
| TCCATGACGATACGTCCGAC+CGG | - | tig0042503:1655-1674 | Msa1462680:intergenic | 55.0% | |
| GAGTGCACGGAAGTTATCGG+CGG | - | tig0042503:1704-1723 | Msa1462680:intergenic | 55.0% | |
| AACTTCCGTGCACTCTGCAC+CGG | + | tig0042503:1709-1728 | Msa1462680:CDS | 55.0% | |
| ! | GAGAAAGGACTCGGTAGCAG+TGG | + | tig0042503:1733-1752 | Msa1462680:CDS | 55.0% |
| ! | TTCACCGCCGGTAATGGTAC+CGG | + | tig0042503:1826-1845 | Msa1462680:CDS | 55.0% |
| CTCTCCACCGGTACCATTAC+CGG | - | tig0042503:1836-1855 | Msa1462680:intergenic | 55.0% | |
| ACCGGTGGAGAGTCCATCTA+CGG | + | tig0042503:1844-1863 | Msa1462680:CDS | 55.0% | |
| GGCGAATTTGGACCCGTAGA+TGG | - | tig0042503:1860-1879 | Msa1462680:intergenic | 55.0% | |
| ATCAAGACCCACACAGGTCC+AGG | + | tig0042503:1892-1911 | Msa1462680:CDS | 55.0% | |
| CGAAGACGGAGTGGCTTGAT+GGG | + | tig0042503:1977-1996 | Msa1462680:CDS | 55.0% | |
| GGTGGTTGAAGGAATGGAGG+TGG | + | tig0042503:2020-2039 | Msa1462680:CDS | 55.0% | |
| GAGAAAGTTGGGTCCGGTTC+GGG | + | tig0042503:2054-2073 | Msa1462680:CDS | 55.0% | |
| ! | AGAAAGTTGGGTCCGGTTCG+GGG | + | tig0042503:2055-2074 | Msa1462680:CDS | 55.0% |
| GGGGAAAACATCAAAGCCGG+TGG | + | tig0042503:2074-2093 | Msa1462680:CDS | 55.0% | |
| CCGCAGTCAGCAATAACCAC+CGG | - | tig0042503:2093-2112 | Msa1462680:intergenic | 55.0% | |
| ! | CCGGTGGTTATTGCTGACTG+CGG | + | tig0042503:2090-2109 | Msa1462680:CDS | 55.0% |
| TTGGGATTGGGGTTGGGGAT+GGG | - | tig0042503:1601-1620 | Msa1462680:intergenic | 55.0% | |
| ! | TTTGGGATTGGGGTTGGGGA+TGG | - | tig0042503:1602-1621 | Msa1462680:intergenic | 55.0% |
| TCCATGACGATACGTCCGAC+CGG | - | tig0042503:1655-1674 | Msa1462680:intergenic | 55.0% | |
| GAGTGCACGGAAGTTATCGG+CGG | - | tig0042503:1704-1723 | Msa1462680:intergenic | 55.0% | |
| AACTTCCGTGCACTCTGCAC+CGG | + | tig0042503:1709-1728 | Msa1462680:CDS | 55.0% | |
| ! | GAGAAAGGACTCGGTAGCAG+TGG | + | tig0042503:1733-1752 | Msa1462680:CDS | 55.0% |
| ! | TTCACCGCCGGTAATGGTAC+CGG | + | tig0042503:1826-1845 | Msa1462680:CDS | 55.0% |
| CTCTCCACCGGTACCATTAC+CGG | - | tig0042503:1836-1855 | Msa1462680:intergenic | 55.0% | |
| ACCGGTGGAGAGTCCATCTA+CGG | + | tig0042503:1844-1863 | Msa1462680:CDS | 55.0% | |
| GGCGAATTTGGACCCGTAGA+TGG | - | tig0042503:1860-1879 | Msa1462680:intergenic | 55.0% | |
| ATCAAGACCCACACAGGTCC+AGG | + | tig0042503:1892-1911 | Msa1462680:CDS | 55.0% | |
| CGAAGACGGAGTGGCTTGAT+GGG | + | tig0042503:1977-1996 | Msa1462680:CDS | 55.0% | |
| GGTGGTTGAAGGAATGGAGG+TGG | + | tig0042503:2020-2039 | Msa1462680:CDS | 55.0% | |
| GAGAAAGTTGGGTCCGGTTC+GGG | + | tig0042503:2054-2073 | Msa1462680:CDS | 55.0% | |
| ! | AGAAAGTTGGGTCCGGTTCG+GGG | + | tig0042503:2055-2074 | Msa1462680:CDS | 55.0% |
| GGGGAAAACATCAAAGCCGG+TGG | + | tig0042503:2074-2093 | Msa1462680:CDS | 55.0% | |
| CCGCAGTCAGCAATAACCAC+CGG | - | tig0042503:2093-2112 | Msa1462680:intergenic | 55.0% | |
| ! | CCGGTGGTTATTGCTGACTG+CGG | + | tig0042503:2090-2109 | Msa1462680:CDS | 55.0% |
| TGGGATTGGGGTTGGGGATG+GGG | - | tig0042503:1600-1619 | Msa1462680:intergenic | 60.0% | |
| CATGACCGTCGGAGACGAAC+CGG | + | tig0042503:1633-1652 | Msa1462680:CDS | 60.0% | |
| ACCGGTCGGACGTATCGTCA+TGG | + | tig0042503:1651-1670 | Msa1462680:CDS | 60.0% | |
| GTTATCGGCGGTGAGAGGAG+TGG | - | tig0042503:1692-1711 | Msa1462680:intergenic | 60.0% | |
| CGGAAGTTATCGGCGGTGAG+AGG | - | tig0042503:1697-1716 | Msa1462680:intergenic | 60.0% | |
| ACTTCCGTGCACTCTGCACC+GGG | + | tig0042503:1710-1729 | Msa1462680:CDS | 60.0% | |
| TGCACCGGGGAGAAAGGACT+CGG | + | tig0042503:1724-1743 | Msa1462680:CDS | 60.0% | |
| GCTACCGAGTCCTTTCTCCC+CGG | - | tig0042503:1731-1750 | Msa1462680:intergenic | 60.0% | |
| CAAGGAGGTGACTTCACCGC+CGG | + | tig0042503:1814-1833 | Msa1462680:CDS | 60.0% | |
| GGTGACTTCACCGCCGGTAA+TGG | + | tig0042503:1820-1839 | Msa1462680:CDS | 60.0% | |
| TCCACCGGTACCATTACCGG+CGG | - | tig0042503:1833-1852 | Msa1462680:intergenic | 60.0% | |
| ! | CCCGTAGATGGACTCTCCAC+CGG | - | tig0042503:1848-1867 | Msa1462680:intergenic | 60.0% |
| CCGGTGGAGAGTCCATCTAC+GGG | + | tig0042503:1845-1864 | Msa1462680:CDS | 60.0% | |
| TCAATGGCGAATGCGGGACC+CGG | + | tig0042503:1922-1941 | Msa1462680:CDS | 60.0% | |
| AATGCGGGACCCGGTACGAA+TGG | + | tig0042503:1931-1950 | Msa1462680:CDS | 60.0% | |
| TATGCACGGCGAAGACGGAG+TGG | + | tig0042503:1968-1987 | Msa1462680:CDS | 60.0% | |
| GCGAAGACGGAGTGGCTTGA+TGG | + | tig0042503:1976-1995 | Msa1462680:CDS | 60.0% | |
| TGGGATTGGGGTTGGGGATG+GGG | - | tig0042503:1600-1619 | Msa1462680:intergenic | 60.0% | |
| CATGACCGTCGGAGACGAAC+CGG | + | tig0042503:1633-1652 | Msa1462680:CDS | 60.0% | |
| ACCGGTCGGACGTATCGTCA+TGG | + | tig0042503:1651-1670 | Msa1462680:CDS | 60.0% | |
| GTTATCGGCGGTGAGAGGAG+TGG | - | tig0042503:1692-1711 | Msa1462680:intergenic | 60.0% | |
| CGGAAGTTATCGGCGGTGAG+AGG | - | tig0042503:1697-1716 | Msa1462680:intergenic | 60.0% | |
| ACTTCCGTGCACTCTGCACC+GGG | + | tig0042503:1710-1729 | Msa1462680:CDS | 60.0% | |
| TGCACCGGGGAGAAAGGACT+CGG | + | tig0042503:1724-1743 | Msa1462680:CDS | 60.0% | |
| GCTACCGAGTCCTTTCTCCC+CGG | - | tig0042503:1731-1750 | Msa1462680:intergenic | 60.0% | |
| CAAGGAGGTGACTTCACCGC+CGG | + | tig0042503:1814-1833 | Msa1462680:CDS | 60.0% | |
| GGTGACTTCACCGCCGGTAA+TGG | + | tig0042503:1820-1839 | Msa1462680:CDS | 60.0% | |
| TCCACCGGTACCATTACCGG+CGG | - | tig0042503:1833-1852 | Msa1462680:intergenic | 60.0% | |
| ! | CCCGTAGATGGACTCTCCAC+CGG | - | tig0042503:1848-1867 | Msa1462680:intergenic | 60.0% |
| CCGGTGGAGAGTCCATCTAC+GGG | + | tig0042503:1845-1864 | Msa1462680:CDS | 60.0% | |
| TCAATGGCGAATGCGGGACC+CGG | + | tig0042503:1922-1941 | Msa1462680:CDS | 60.0% | |
| AATGCGGGACCCGGTACGAA+TGG | + | tig0042503:1931-1950 | Msa1462680:CDS | 60.0% | |
| TATGCACGGCGAAGACGGAG+TGG | + | tig0042503:1968-1987 | Msa1462680:CDS | 60.0% | |
| GCGAAGACGGAGTGGCTTGA+TGG | + | tig0042503:1976-1995 | Msa1462680:CDS | 60.0% | |
| ACCGTCGGAGACGAACCGGT+CGG | + | tig0042503:1637-1656 | Msa1462680:CDS | 65.0% | |
| !! | TCCGACCGGTTCGTCTCCGA+CGG | - | tig0042503:1641-1660 | Msa1462680:intergenic | 65.0% |
| GGCGGTGAGAGGAGTGGTGT+CGG | - | tig0042503:1686-1705 | Msa1462680:intergenic | 65.0% | |
| CTTCCGTGCACTCTGCACCG+GGG | + | tig0042503:1711-1730 | Msa1462680:CDS | 65.0% | |
| TCTCCCCGGTGCAGAGTGCA+CGG | - | tig0042503:1717-1736 | Msa1462680:intergenic | 65.0% | |
| GCACTCTGCACCGGGGAGAA+AGG | + | tig0042503:1718-1737 | Msa1462680:CDS | 65.0% | |
| ! | ACCGCCGGTAATGGTACCGG+TGG | + | tig0042503:1829-1848 | Msa1462680:CDS | 65.0% |
| ACCGTCGGAGACGAACCGGT+CGG | + | tig0042503:1637-1656 | Msa1462680:CDS | 65.0% | |
| !! | TCCGACCGGTTCGTCTCCGA+CGG | - | tig0042503:1641-1660 | Msa1462680:intergenic | 65.0% |
| GGCGGTGAGAGGAGTGGTGT+CGG | - | tig0042503:1686-1705 | Msa1462680:intergenic | 65.0% | |
| CTTCCGTGCACTCTGCACCG+GGG | + | tig0042503:1711-1730 | Msa1462680:CDS | 65.0% | |
| TCTCCCCGGTGCAGAGTGCA+CGG | - | tig0042503:1717-1736 | Msa1462680:intergenic | 65.0% | |
| GCACTCTGCACCGGGGAGAA+AGG | + | tig0042503:1718-1737 | Msa1462680:CDS | 65.0% | |
| ! | ACCGCCGGTAATGGTACCGG+TGG | + | tig0042503:1829-1848 | Msa1462680:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0042503 | gene | 1400 | 2155 | 1400 | ID=Msa1462680;Name=Msa1462680 |
| tig0042503 | mRNA | 1400 | 2155 | 1400 | ID=Msa1462680-mRNA-1;Parent=Msa1462680;Name=Msa1462680-mRNA-1;_AED=0.03;_eAED=0.04;_QI=0|0|0|0.5|1|1|2|0|199 |
| tig0042503 | exon | 1400 | 1403 | 1400 | ID=Msa1462680-mRNA-1:exon:23767;Parent=Msa1462680-mRNA-1 |
| tig0042503 | exon | 1560 | 2155 | 1560 | ID=Msa1462680-mRNA-1:exon:23768;Parent=Msa1462680-mRNA-1 |
| tig0042503 | CDS | 1400 | 1403 | 1400 | ID=Msa1462680-mRNA-1:cds;Parent=Msa1462680-mRNA-1 |
| tig0042503 | CDS | 1560 | 2155 | 1560 | ID=Msa1462680-mRNA-1:cds;Parent=Msa1462680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
