AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0556170


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0556170 MtrunA17_Chr4g0044891 93.731 335 7 4 1 330 1 326 0.0 589
Msa0556170 MtrunA17_Chr6g0449901 89.080 348 18 4 1 330 1 346 0.0 574
Msa0556170 MtrunA17_Chr4g0027081 52.679 336 143 6 1 330 1 326 6.02e-123 356
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0556170 AT5G55610.1 51.343 335 146 4 1 327 1 326 6.46e-105 310
Msa0556170 AT5G55610.2 50.649 231 97 4 1 223 1 222 2.64e-59 192

Find 80 sgRNAs with CRISPR-Local

Find 312 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGAGCTACTAACTTGAATT+TGG 0.185964 4_1:-54241554 Msa0556170:three_prime_UTR
GATGCACTATTTGCCTCTTT+TGG 0.231224 4_1:-54244324 Msa0556170:CDS
ACCAAGCAAGTTCAACTTCT+TGG 0.236486 4_1:-54241972 Msa0556170:CDS
GGTTTCTGTTGCAAAGCTTT+TGG 0.255658 4_1:+54246562 None:intergenic
ATGGCTTGGAAACTTCTTAA+AGG 0.268888 4_1:-54242479 Msa0556170:intron
AAAGCAGAGAATAGAGGTTT+AGG 0.295661 4_1:+54244389 None:intergenic
ATCGTCATTGGCATTGAAAA+TGG 0.334939 4_1:+54242019 None:intergenic
TAGCTATACTTGTAGATCTA+TGG 0.335649 4_1:-54246413 Msa0556170:CDS
GAAAGCCCTTGAAGCCAAAT+TGG 0.344438 4_1:+54246296 None:intergenic
CTGGTACCAATTTGGCTTCA+AGG 0.345953 4_1:-54246302 Msa0556170:CDS
AGGATGTGCTGCTGGTGATT+TGG 0.382760 4_1:-54241723 Msa0556170:CDS
AGGTTGCCCTTACTTCAATA+AGG 0.392106 4_1:-54241944 Msa0556170:CDS
TGGCTTCAAGGGCTTTCTTT+CGG 0.394306 4_1:-54246290 Msa0556170:intron
ACCAGATCAACACGGTGTTC+TGG 0.408130 4_1:+54244242 None:intergenic
TGACTTATTTGAGAATATTA+CGG 0.410949 4_1:-54244273 Msa0556170:CDS
CCATTCGCTCTGAAACATAA+TGG 0.424104 4_1:+54242498 None:intergenic
AGCAGAAGAGGAAGCAGAAA+AGG 0.434687 4_1:+54246353 None:intergenic
AAAGAGGCAAATAGTGCATC+AGG 0.438648 4_1:+54244327 None:intergenic
GCGCAAAATGCTACAATGAT+TGG 0.438885 4_1:+54241695 None:intergenic
ACTGTCTTCGTCATCGTCAT+TGG 0.446980 4_1:+54242007 None:intergenic
TGCCACTTGAAATGCTTTGT+CGG 0.447275 4_1:+54241673 None:intergenic
AACCACACCTTATTGAAGTA+AGG 0.448289 4_1:+54241937 None:intergenic
AATTTGAAACGGAGGCAATA+AGG 0.450658 4_1:+54246541 None:intergenic
TCCAAGAAGTTGAACTTGCT+TGG 0.452273 4_1:+54241971 None:intergenic
CACTTGCAATGACTTCAATA+AGG 0.453405 4_1:-54244355 Msa0556170:CDS
GCCAGAACACCGTGTTGATC+TGG 0.456801 4_1:-54244243 Msa0556170:CDS
TGGTACCAATTTGGCTTCAA+GGG 0.457675 4_1:-54246301 Msa0556170:CDS
ACCCTTGTTCGTCCATCACT+TGG 0.457968 4_1:-54241873 Msa0556170:CDS
TGCTAGGAGTTGCAGCATCA+TGG 0.479028 4_1:-54242082 Msa0556170:CDS
AATTCAAAAGCAGAGAATAG+AGG 0.479918 4_1:+54244383 None:intergenic
AGCACCGATCCCTGCTCCTA+TGG 0.484318 4_1:+54241896 None:intergenic
CACAGTAACAGCTTAGAAAG+TGG 0.484571 4_1:+54241456 None:intergenic
TGCAGCTACAGCAGCAGAAG+AGG 0.485508 4_1:+54246341 None:intergenic
CCATCACTTGGCCAGTGGAT+TGG 0.485537 4_1:-54241861 Msa0556170:intron
GAAAAGAAGTAAACATAAGT+AGG 0.487456 4_1:+54242229 None:intergenic
CATCGTTGTTGAATTTGAAA+CGG 0.489227 4_1:+54246530 None:intergenic
CCAGCATCACAATATGCAAC+TGG 0.492213 4_1:+54244515 None:intergenic
GCCTTGCGAGTAGCTGATCT+AGG 0.494720 4_1:+54242265 None:intergenic
CAGAGAATAGAGGTTTAGGT+TGG 0.496669 4_1:+54244393 None:intergenic
CCATTATGTTTCAGAGCGAA+TGG 0.519354 4_1:-54242498 Msa0556170:CDS
CCAGTTGCATATTGTGATGC+TGG 0.519689 4_1:-54244515 Msa0556170:CDS
TTATGATCTTACCAATCCAC+TGG 0.520316 4_1:+54241850 None:intergenic
CGCCGACAAAGCATTTCAAG+TGG 0.520834 4_1:-54241675 Msa0556170:CDS
TTCGTCCATCACTTGGCCAG+TGG 0.522512 4_1:-54241866 Msa0556170:CDS
GCTAGGAGTTGCAGCATCAT+GGG 0.526174 4_1:-54242081 Msa0556170:CDS
GCCCTTACTTCAATAAGGTG+TGG 0.528158 4_1:-54241939 Msa0556170:CDS
AGTTCAACTTCTTGGACAGA+AGG 0.529384 4_1:-54241964 Msa0556170:CDS
TCTGCACGCGGCTCCAAAAG+AGG 0.538832 4_1:+54244311 None:intergenic
TGTGCTGCTGGTGATTTGGT+TGG 0.542559 4_1:-54241719 Msa0556170:CDS
CAGCTACTCGCAAGGCTGCA+AGG 0.544366 4_1:-54242258 Msa0556170:CDS
GCCTCCATAGGAGCAGGGAT+CGG 0.554442 4_1:-54241900 Msa0556170:CDS
TCTTTCTAATATTCTTCGAG+TGG 0.562654 4_1:+54242529 None:intergenic
CCAATCCACTGGCCAAGTGA+TGG 0.565048 4_1:+54241861 None:intergenic
ACAACACAAGTAACAATGGC+GGG 0.567663 4_1:-54246438 Msa0556170:exon
CGTTGTTGAATTTGAAACGG+AGG 0.569269 4_1:+54246533 None:intergenic
TTTACAAACCTCAAAATGAA+CGG 0.569781 4_1:-54241619 Msa0556170:three_prime_UTR
AGTAACAAAGTCACCCTCAT+GGG 0.577849 4_1:+54241494 None:intergenic
ATGGGTTGTTCAAGTAGGCA+TGG 0.578157 4_1:-54242063 Msa0556170:CDS
GCATCATGGGTTGTTCAAGT+AGG 0.587111 4_1:-54242068 Msa0556170:CDS
CAGTAACAAAGTCACCCTCA+TGG 0.590913 4_1:+54241493 None:intergenic
ATGTTTCAGAGCGAATGGCT+TGG 0.594195 4_1:-54242493 Msa0556170:CDS
CTATACAAAGTGCTTCTGAA+AGG 0.598512 4_1:-54244463 Msa0556170:CDS
TTGTAACATTCTTCCCATGA+GGG 0.598724 4_1:-54241507 Msa0556170:three_prime_UTR
TTATGCACAGGACACATGCT+AGG 0.599684 4_1:-54242098 Msa0556170:intron
ACCACACCTTATTGAAGTAA+GGG 0.601634 4_1:+54241938 None:intergenic
GGCCAAGTGATGGACGAACA+AGG 0.608320 4_1:+54241871 None:intergenic
TTAAAAGTCACAACAAAACA+AGG 0.614671 4_1:+54246476 None:intergenic
ACCGATCCCTGCTCCTATGG+AGG 0.615889 4_1:+54241899 None:intergenic
TCCTAGATCAGCTACTCGCA+AGG 0.622944 4_1:-54242266 Msa0556170:CDS
AAGAACAACACAAGTAACAA+TGG 0.628282 4_1:-54246442 Msa0556170:exon
CTATACTTGTAGATCTATGG+AGG 0.630412 4_1:-54246410 Msa0556170:CDS
GCCAAGTGATGGACGAACAA+GGG 0.637107 4_1:+54241872 None:intergenic
GTTGTAACATTCTTCCCATG+AGG 0.645898 4_1:-54241508 Msa0556170:three_prime_UTR
AATAAGATCTTCAGATACTG+TGG 0.646098 4_1:+54244490 None:intergenic
AGATCTTCTATTTCTGCACG+CGG 0.653709 4_1:+54244299 None:intergenic
AACAACACAAGTAACAATGG+CGG 0.655953 4_1:-54246439 Msa0556170:exon
CTTATTTGAGAATATTACGG+AGG 0.657164 4_1:-54244270 Msa0556170:CDS
GTGGGCAGAACAACATTCAG+AGG 0.670489 4_1:-54242205 Msa0556170:intron
TGTGAAGCAAATCATACGTG+AGG 0.685919 4_1:-54244201 Msa0556170:intron
AGGGAACAACCAGATCAACA+CGG 0.751632 4_1:+54244234 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAAGAAAAAATAATACTT+TGG + chr4_1:54243150-54243169 None:intergenic 10.0%
!!! TTTTAACATCCAAATAAAAA+GGG + chr4_1:54241771-54241790 None:intergenic 15.0%
!!! TTTTTAACATCCAAATAAAA+AGG + chr4_1:54241772-54241791 None:intergenic 15.0%
!!! TTAATATTCATTCAGATTTT+AGG - chr4_1:54241924-54241943 Msa0556170:CDS 15.0%
!!! TAATATTCATTCAGATTTTA+GGG - chr4_1:54241925-54241944 Msa0556170:CDS 15.0%
!!! AATAATAATTTGTTCCAATT+TGG - chr4_1:54242328-54242347 Msa0556170:intron 15.0%
!!! CATTTTGAAACAATTTTTTT+TGG + chr4_1:54243046-54243065 None:intergenic 15.0%
!! TAAATACTTCAAAATATTCA+AGG - chr4_1:54243319-54243338 Msa0556170:intron 15.0%
!! AAATACTTCAAAATATTCAA+GGG - chr4_1:54243320-54243339 Msa0556170:intron 15.0%
!!! TATAATTTTTCGTTGTATTT+TGG - chr4_1:54243410-54243429 Msa0556170:intron 15.0%
!!! TTTTTTTTGTTTTCAAAACT+CGG - chr4_1:54243929-54243948 Msa0556170:intron 15.0%
!! AATAAACATATTAATTGAGT+TGG - chr4_1:54244075-54244094 Msa0556170:intron 15.0%
!! ATAAGTATGAATTAAAAAGT+AGG + chr4_1:54244152-54244171 None:intergenic 15.0%
!!! TTTTTAATTCATACTTATGT+AGG - chr4_1:54244154-54244173 Msa0556170:intron 15.0%
!!! ATCTTGGTTTTATAATTTTA+AGG - chr4_1:54244506-54244525 Msa0556170:CDS 15.0%
!!! TTATAATTTTAAGGAGTATA+TGG - chr4_1:54244515-54244534 Msa0556170:CDS 15.0%
!! TAAGGTTAAATTATCGTATT+GGG + chr4_1:54241514-54241533 None:intergenic 20.0%
!! TTAAGGTTAAATTATCGTAT+TGG + chr4_1:54241515-54241534 None:intergenic 20.0%
!!! TTTTGATATTGTTTTTGAGA+TGG - chr4_1:54241797-54241816 Msa0556170:intron 20.0%
!!! TTTGATATTGTTTTTGAGAT+GGG - chr4_1:54241798-54241817 Msa0556170:intron 20.0%
!!! AATATTCATTCAGATTTTAG+GGG - chr4_1:54241926-54241945 Msa0556170:CDS 20.0%
!!! TGATTAATGACTAGTATTTT+CGG - chr4_1:54242688-54242707 Msa0556170:intron 20.0%
!!! ATTTTCAAACTTCAATAACT+TGG - chr4_1:54242735-54242754 Msa0556170:intron 20.0%
!! GTAACATAGTATTAATTGAA+GGG + chr4_1:54243120-54243139 None:intergenic 20.0%
!! TGTAACATAGTATTAATTGA+AGG + chr4_1:54243121-54243140 None:intergenic 20.0%
!! AAATTATCCTAATCAACTAT+TGG + chr4_1:54243184-54243203 None:intergenic 20.0%
!! AATAGTTGATTAGGATAATT+TGG - chr4_1:54243183-54243202 Msa0556170:intron 20.0%
!! AATACTTCAAAATATTCAAG+GGG - chr4_1:54243321-54243340 Msa0556170:intron 20.0%
!! TGACTTATTTGAGAATATTA+CGG - chr4_1:54243740-54243759 Msa0556170:intron 20.0%
!!! TCTTGTTTTAACATTTAGTT+AGG - chr4_1:54243854-54243873 Msa0556170:intron 20.0%
!!! TCTCATTTATTTTGAAATCT+TGG - chr4_1:54244490-54244509 Msa0556170:CDS 20.0%
!! GTCAAATAAGTTTCAAAAAT+TGG + chr4_1:54244621-54244640 None:intergenic 20.0%
!! TATGAAAAATAAAGCAAAGA+AGG + chr4_1:54244911-54244930 None:intergenic 20.0%
!! AAAACTAATTGCTTGAAATT+TGG + chr4_1:54245201-54245220 None:intergenic 20.0%
!!! TTGACTTGGTAATTTAAAAA+CGG - chr4_1:54245387-54245406 Msa0556170:intron 20.0%
!! AGTTGAAATGAATTAAAATC+AGG + chr4_1:54246241-54246260 None:intergenic 20.0%
! TTAAAAGTCACAACAAAACA+AGG + chr4_1:54241540-54241559 None:intergenic 25.0%
!!! GGCTTTGGTTATTTTTATAA+GGG - chr4_1:54241819-54241838 Msa0556170:intron 25.0%
!!! TTTGGTTATTTTTATAAGGG+TGG - chr4_1:54241822-54241841 Msa0556170:intron 25.0%
!!! GTTTTTTAGTTCAGTTGATT+TGG - chr4_1:54241858-54241877 Msa0556170:intron 25.0%
!!! ATTTGGTGTTTTGATGATTT+TGG - chr4_1:54241875-54241894 Msa0556170:CDS 25.0%
!!! TTTGGTGTTTTGATGATTTT+GGG - chr4_1:54241876-54241895 Msa0556170:CDS 25.0%
!!! TTTTGATGATTTTGGGTAAT+TGG - chr4_1:54241883-54241902 Msa0556170:CDS 25.0%
!!! TTTGATGATTTTGGGTAATT+GGG - chr4_1:54241884-54241903 Msa0556170:CDS 25.0%
!!! TTTTAGGGGTTTTTTTATGA+TGG - chr4_1:54241940-54241959 Msa0556170:CDS 25.0%
!!! TTTAGGGGTTTTTTTATGAT+GGG - chr4_1:54241941-54241960 Msa0556170:CDS 25.0%
!! TTTTCTCTAACTATAACCAA+TGG - chr4_1:54242154-54242173 Msa0556170:intron 25.0%
!! TAGTGGGATACATAATTTTT+AGG - chr4_1:54242404-54242423 Msa0556170:intron 25.0%
!! AGTGGGATACATAATTTTTA+GGG - chr4_1:54242405-54242424 Msa0556170:intron 25.0%
!!! AGATACTAGTTTTCTAACTT+TGG - chr4_1:54242711-54242730 Msa0556170:intron 25.0%
! TGAATCTTTCAAATTTGCAT+TGG - chr4_1:54242817-54242836 Msa0556170:intron 25.0%
! AAATTTGCATTGGAATTTGA+TGG - chr4_1:54242827-54242846 Msa0556170:intron 25.0%
! GAAGAAAATAATCTGAATTG+TGG - chr4_1:54242958-54242977 Msa0556170:intron 25.0%
! AAACAAACCAATAGTTGATT+AGG - chr4_1:54243174-54243193 Msa0556170:intron 25.0%
!! CGTTTTTGTACTAAATCTTT+CGG + chr4_1:54243592-54243611 None:intergenic 25.0%
! AAGATAAGCTAAAAAACGAT+TGG + chr4_1:54244227-54244246 None:intergenic 25.0%
!! TACTCATTTCTTTTCTCAAA+TGG + chr4_1:54244307-54244326 None:intergenic 25.0%
!! TTACTAACTTGACTTGATAA+AGG - chr4_1:54244360-54244379 Msa0556170:CDS 25.0%
! AAAGAAAATTTAGGTCTCTA+AGG + chr4_1:54244747-54244766 None:intergenic 25.0%
! AGTACCAGAAAAGAAAATTT+AGG + chr4_1:54244756-54244775 None:intergenic 25.0%
! AAAATAAAGCAAAGAAGGTA+GGG + chr4_1:54244906-54244925 None:intergenic 25.0%
! AAAAATAAAGCAAAGAAGGT+AGG + chr4_1:54244907-54244926 None:intergenic 25.0%
! TGAACTATTATAGAGTAATG+TGG + chr4_1:54245007-54245026 None:intergenic 25.0%
! AGAATAGAATATCATGAAAG+AGG - chr4_1:54245235-54245254 Msa0556170:intron 25.0%
! GAAGTAACATGAAATTGAAT+TGG - chr4_1:54245285-54245304 Msa0556170:intron 25.0%
! TATTAAACTTTGACTGCTTT+AGG + chr4_1:54245623-54245642 None:intergenic 25.0%
! GAAAAGAAGTAAACATAAGT+AGG + chr4_1:54245787-54245806 None:intergenic 25.0%
!! TTATGTTTACTTCTTTTCTG+TGG - chr4_1:54245789-54245808 Msa0556170:intron 25.0%
!! TATGTTTACTTCTTTTCTGT+GGG - chr4_1:54245790-54245809 Msa0556170:intron 25.0%
!! ATAGTTGATATTAAATGCTC+AGG + chr4_1:54245874-54245893 None:intergenic 25.0%
!! AAAACTTTGTTCTTCTTTTC+AGG - chr4_1:54246270-54246289 Msa0556170:intron 25.0%
! TTTACAAACCTCAAAATGAA+CGG - chr4_1:54246394-54246413 Msa0556170:CDS 25.0%
CATCGTTGTTGAATTTGAAA+CGG + chr4_1:54241486-54241505 None:intergenic 30.0%
! CACAACAAAACAAGGTTTTA+AGG + chr4_1:54241532-54241551 None:intergenic 30.0%
AAGAACAACACAAGTAACAA+TGG - chr4_1:54241571-54241590 Msa0556170:three_prime_UTR 30.0%
TAGCTATACTTGTAGATCTA+TGG - chr4_1:54241600-54241619 Msa0556170:three_prime_UTR 30.0%
!! TTCTGCTTTTCAATCTTCTT+CGG - chr4_1:54241637-54241656 Msa0556170:three_prime_UTR 30.0%
!! TCTTTCGGTATGTTTTTATG+TGG - chr4_1:54241738-54241757 Msa0556170:intron 30.0%
!! GGAGTATTACCCTTTTTATT+TGG - chr4_1:54241759-54241778 Msa0556170:intron 30.0%
!!! GGGCTTTGGTTATTTTTATA+AGG - chr4_1:54241818-54241837 Msa0556170:intron 30.0%
! ATACACACTTTTGATCAGAA+GGG - chr4_1:54242018-54242037 Msa0556170:CDS 30.0%
!!! GATACATAATTTTTAGGGTG+CGG - chr4_1:54242410-54242429 Msa0556170:intron 30.0%
AGTTGAAATACTGAGATTTG+AGG - chr4_1:54242457-54242476 Msa0556170:intron 30.0%
AAATACTGAGATTTGAGGAA+TGG - chr4_1:54242462-54242481 Msa0556170:intron 30.0%
ATTGTGTGAGAATGAGATAT+AGG - chr4_1:54242588-54242607 Msa0556170:intron 30.0%
TGAGAATGAGATATAGGTTA+TGG - chr4_1:54242594-54242613 Msa0556170:intron 30.0%
GAGAATGAGATATAGGTTAT+GGG - chr4_1:54242595-54242614 Msa0556170:intron 30.0%
AGAATGAGATATAGGTTATG+GGG - chr4_1:54242596-54242615 Msa0556170:intron 30.0%
TGAAAGATTCATGTATTACG+AGG + chr4_1:54242808-54242827 None:intergenic 30.0%
TAATATGTAGATGACATGCA+AGG - chr4_1:54242861-54242880 Msa0556170:intron 30.0%
CCTATATACACAAAGAATCA+TGG + chr4_1:54242905-54242924 None:intergenic 30.0%
CCATGATTCTTTGTGTATAT+AGG - chr4_1:54242902-54242921 Msa0556170:intron 30.0%
TTCAAAATATTCAAGGGGTT+AGG - chr4_1:54243326-54243345 Msa0556170:intron 30.0%
TCAAAATATTCAAGGGGTTA+GGG - chr4_1:54243327-54243346 Msa0556170:intron 30.0%
! TAGGGTTAAGTTCTGTATTT+TGG - chr4_1:54243345-54243364 Msa0556170:intron 30.0%
!! GTTCTGTATTTTGGAAACAT+CGG - chr4_1:54243354-54243373 Msa0556170:intron 30.0%
AGATGTCATGAAACAAAGTA+AGG + chr4_1:54243445-54243464 None:intergenic 30.0%
! ACTTTGTTTCATGACATCTT+TGG - chr4_1:54243446-54243465 Msa0556170:intron 30.0%
CTGGTATACTGAAATTAAAG+AGG + chr4_1:54243482-54243501 None:intergenic 30.0%
AATAAGATCTTCAGATACTG+TGG + chr4_1:54243526-54243545 None:intergenic 30.0%
AATTCAAAAGCAGAGAATAG+AGG + chr4_1:54243633-54243652 None:intergenic 30.0%
!! TATTCTCTGCTTTTGAATTG+AGG - chr4_1:54243634-54243653 Msa0556170:intron 30.0%
CTTATTTGAGAATATTACGG+AGG - chr4_1:54243743-54243762 Msa0556170:intron 30.0%
AGATAATTTACTTAGCGAAG+AGG + chr4_1:54244043-54244062 None:intergenic 30.0%
TGAATCTCTAACTATGTGTA+TGG - chr4_1:54244188-54244207 Msa0556170:intron 30.0%
AGGTTAACCAATTATTAGTG+TGG - chr4_1:54244380-54244399 Msa0556170:CDS 30.0%
TAAAGATATTGGGCTCAATT+AGG + chr4_1:54244436-54244455 None:intergenic 30.0%
AATTGAGCCCAATATCTTTA+AGG - chr4_1:54244436-54244455 Msa0556170:CDS 30.0%
! TCTAGCTCCTTAAAGATATT+GGG + chr4_1:54244446-54244465 None:intergenic 30.0%
!!! TTCTTTTTGAGTCTAAACAG+TGG - chr4_1:54244653-54244672 Msa0556170:intron 30.0%
! GAGACCTAAATTTTCTTTTC+TGG - chr4_1:54244749-54244768 Msa0556170:intron 30.0%
TTGCTTGAAATTTGGAGATA+GGG + chr4_1:54245193-54245212 None:intergenic 30.0%
ATTGCTTGAAATTTGGAGAT+AGG + chr4_1:54245194-54245213 None:intergenic 30.0%
TCTTTCTAATATTCTTCGAG+TGG + chr4_1:54245487-54245506 None:intergenic 30.0%
! ACTTCTTAAAGGTATGTTCT+CGG - chr4_1:54245545-54245564 Msa0556170:intron 30.0%
! GAAGAACAAAGTTTTGCTTT+AGG + chr4_1:54246265-54246284 None:intergenic 30.0%
ATGAGCTACTAACTTGAATT+TGG - chr4_1:54246459-54246478 Msa0556170:five_prime_UTR 30.0%
!!! TTTACCTCTTTTTAGCTGAA+AGG - chr4_1:54246482-54246501 Msa0556170:intron 30.0%
!!! TTACCTCTTTTTAGCTGAAA+GGG - chr4_1:54246483-54246502 Msa0556170:intron 30.0%
! AATTTGAAACGGAGGCAATA+AGG + chr4_1:54241475-54241494 None:intergenic 35.0%
AACAACACAAGTAACAATGG+CGG - chr4_1:54241574-54241593 Msa0556170:three_prime_UTR 35.0%
CTATACTTGTAGATCTATGG+AGG - chr4_1:54241603-54241622 Msa0556170:three_prime_UTR 35.0%
!!! ATTGTTTTTGAGATGGGCTT+TGG - chr4_1:54241804-54241823 Msa0556170:intron 35.0%
!! TGATTTTGGGTAATTGGGTA+TGG - chr4_1:54241889-54241908 Msa0556170:CDS 35.0%
! CATACACACTTTTGATCAGA+AGG - chr4_1:54242017-54242036 Msa0556170:CDS 35.0%
! ACACTTTTGATCACAAGGAT+CGG + chr4_1:54242064-54242083 None:intergenic 35.0%
ATGAAGCAATGACATAGAGA+CGG + chr4_1:54242201-54242220 None:intergenic 35.0%
TCTCTATGTCATTGCTTCAT+AGG - chr4_1:54242201-54242220 Msa0556170:intron 35.0%
CTCTATGTCATTGCTTCATA+GGG - chr4_1:54242202-54242221 Msa0556170:intron 35.0%
ATAGTACCACTAACTTAGCA+AGG - chr4_1:54242293-54242312 Msa0556170:intron 35.0%
TAGTACCACTAACTTAGCAA+GGG - chr4_1:54242294-54242313 Msa0556170:intron 35.0%
TAATACCCTTGCTAAGTTAG+TGG + chr4_1:54242302-54242321 None:intergenic 35.0%
TGTAATAGACGTAGCCAAAT+TGG + chr4_1:54242345-54242364 None:intergenic 35.0%
!!! TTTTAGGGTGCGGTTAAATT+AGG - chr4_1:54242420-54242439 Msa0556170:intron 35.0%
AAGTCTGTAAACCGATCAAT+GGG + chr4_1:54242768-54242787 None:intergenic 35.0%
TAAGTCTGTAAACCGATCAA+TGG + chr4_1:54242769-54242788 None:intergenic 35.0%
TGCATTGGAATTTGATGGAA+AGG - chr4_1:54242832-54242851 Msa0556170:intron 35.0%
GATGACATGCAAGGAAAAAA+AGG - chr4_1:54242870-54242889 Msa0556170:intron 35.0%
!! AAGCGACACTCATTTTGAAA+CGG + chr4_1:54243020-54243039 None:intergenic 35.0%
ATTGCACACAGATTAAGGAA+TGG + chr4_1:54243240-54243259 None:intergenic 35.0%
TTCCTTAATCTGTGTGCAAT+TGG - chr4_1:54243240-54243259 Msa0556170:intron 35.0%
AAAGCGACACTCATTTGAAA+CGG - chr4_1:54243265-54243284 Msa0556170:intron 35.0%
! ACATCGGAAGTGTAAAAGAT+TGG - chr4_1:54243370-54243389 Msa0556170:intron 35.0%
! CATCGGAAGTGTAAAAGATT+GGG - chr4_1:54243371-54243390 Msa0556170:intron 35.0%
! CTATACAAAGTGCTTCTGAA+AGG - chr4_1:54243550-54243569 Msa0556170:intron 35.0%
AAAGCAGAGAATAGAGGTTT+AGG + chr4_1:54243627-54243646 None:intergenic 35.0%
CACTTGCAATGACTTCAATA+AGG - chr4_1:54243658-54243677 Msa0556170:intron 35.0%
! TGCTTCACAGACTTTTTGAA+GGG + chr4_1:54243801-54243820 None:intergenic 35.0%
! TTGCTTCACAGACTTTTTGA+AGG + chr4_1:54243802-54243821 None:intergenic 35.0%
AATGACAAGTCACGTTCTTT+GGG + chr4_1:54243962-54243981 None:intergenic 35.0%
AAATGACAAGTCACGTTCTT+TGG + chr4_1:54243963-54243982 None:intergenic 35.0%
TAGCTTATCTTCTCCTCTTA+AGG - chr4_1:54244236-54244255 Msa0556170:CDS 35.0%
! AGCTTTTACGGAAAATCGTT+TGG + chr4_1:54244272-54244291 None:intergenic 35.0%
GTGACATCCACACTAATAAT+TGG + chr4_1:54244390-54244409 None:intergenic 35.0%
TTAGTGTGGATGTCACATTT+CGG - chr4_1:54244394-54244413 Msa0556170:CDS 35.0%
! CTCTAGCTCCTTAAAGATAT+TGG + chr4_1:54244447-54244466 None:intergenic 35.0%
!! AATGAAGCTAAGGTTGATAG+TGG - chr4_1:54244682-54244701 Msa0556170:intron 35.0%
! CAAGGCATCTCAAAAGTTTA+TGG + chr4_1:54244709-54244728 None:intergenic 35.0%
!!! TAAACTTTTGAGATGCCTTG+AGG - chr4_1:54244709-54244728 Msa0556170:intron 35.0%
!! TTTTCTTTTCTGGTACTGCA+TGG - chr4_1:54244759-54244778 Msa0556170:intron 35.0%
GAAGATCATCTGAGTAACAA+GGG + chr4_1:54244827-54244846 None:intergenic 35.0%
TGAAGATCATCTGAGTAACA+AGG + chr4_1:54244828-54244847 None:intergenic 35.0%
! AGGCAGAAGCATAATTTGAT+GGG + chr4_1:54244877-54244896 None:intergenic 35.0%
GGATTAATCGAAGCTTAATG+AGG + chr4_1:54245044-54245063 None:intergenic 35.0%
TTGAAATTTGGAGATAGGGT+TGG + chr4_1:54245189-54245208 None:intergenic 35.0%
!! TCATGAAAGAGGTGTTTAAG+AGG - chr4_1:54245246-54245265 Msa0556170:intron 35.0%
!! CATGAAAGAGGTGTTTAAGA+GGG - chr4_1:54245247-54245266 Msa0556170:intron 35.0%
! TGCCTTTTCTATATTCCTGA+TGG - chr4_1:54245353-54245372 Msa0556170:intron 35.0%
GTCCATCAGGAATATAGAAA+AGG + chr4_1:54245358-54245377 None:intergenic 35.0%
! ATGGCTTGGAAACTTCTTAA+AGG - chr4_1:54245534-54245553 Msa0556170:intron 35.0%
ACTCTATGTTCATTATGCAC+AGG - chr4_1:54245903-54245922 Msa0556170:intron 35.0%
! ATCGTCATTGGCATTGAAAA+TGG + chr4_1:54245997-54246016 None:intergenic 35.0%
ACCACACCTTATTGAAGTAA+GGG + chr4_1:54246078-54246097 None:intergenic 35.0%
AACCACACCTTATTGAAGTA+AGG + chr4_1:54246079-54246098 None:intergenic 35.0%
!!! TCTTTAGTTTTTGCCTCCAT+AGG - chr4_1:54246101-54246120 Msa0556170:intron 35.0%
TTATGATCTTACCAATCCAC+TGG + chr4_1:54246166-54246185 None:intergenic 35.0%
! AGATACATCCGTTCATTTTG+AGG + chr4_1:54246405-54246424 None:intergenic 35.0%
TTGTAACATTCTTCCCATGA+GGG - chr4_1:54246506-54246525 Msa0556170:intron 35.0%
! TCTGTTGCAAAGCTTTTGGA+TGG + chr4_1:54241450-54241469 None:intergenic 40.0%
! GGTTTCTGTTGCAAAGCTTT+TGG + chr4_1:54241454-54241473 None:intergenic 40.0%
! CGTTGTTGAATTTGAAACGG+AGG + chr4_1:54241483-54241502 None:intergenic 40.0%
ACAACACAAGTAACAATGGC+GGG - chr4_1:54241575-54241594 Msa0556170:three_prime_UTR 40.0%
! TTTTGCTGCTGGTACCAATT+TGG - chr4_1:54241703-54241722 Msa0556170:CDS 40.0%
! TGGTACCAATTTGGCTTCAA+GGG - chr4_1:54241712-54241731 Msa0556170:CDS 40.0%
!!! AGGGGTTTTTTTATGATGGG+TGG - chr4_1:54241944-54241963 Msa0556170:CDS 40.0%
! ACACTTTTGATCAGAAGGGT+AGG - chr4_1:54242022-54242041 Msa0556170:CDS 40.0%
TCACATATGTCATGTCGTGT+CGG + chr4_1:54242111-54242130 None:intergenic 40.0%
TCAAATTGCAGCAGCTATAG+TGG + chr4_1:54242368-54242387 None:intergenic 40.0%
! TGTGATTGCTTGCTAGGAAA+GGG - chr4_1:54242536-54242555 Msa0556170:CDS 40.0%
AGATATAGGTTATGGGGTCA+TGG - chr4_1:54242602-54242621 Msa0556170:intron 40.0%
GATATAGGTTATGGGGTCAT+GGG - chr4_1:54242603-54242622 Msa0556170:intron 40.0%
! TTGGTAATTCCCCCATTGAT+CGG - chr4_1:54242754-54242773 Msa0556170:intron 40.0%
AGTCTGTAAACCGATCAATG+GGG + chr4_1:54242767-54242786 None:intergenic 40.0%
AACGGAGGGAGTAGTAAAAT+TGG + chr4_1:54243002-54243021 None:intergenic 40.0%
!!! GACACTCATTTTGAAACGGA+GGG + chr4_1:54243016-54243035 None:intergenic 40.0%
AGCCAATTGCACACAGATTA+AGG + chr4_1:54243245-54243264 None:intergenic 40.0%
CAGAGAATAGAGGTTTAGGT+TGG + chr4_1:54243623-54243642 None:intergenic 40.0%
AAAGAGGCAAATAGTGCATC+AGG + chr4_1:54243689-54243708 None:intergenic 40.0%
! GATGCACTATTTGCCTCTTT+TGG - chr4_1:54243689-54243708 Msa0556170:intron 40.0%
!! AGATCTTCTATTTCTGCACG+CGG + chr4_1:54243717-54243736 None:intergenic 40.0%
TGTGAAGCAAATCATACGTG+AGG - chr4_1:54243812-54243831 Msa0556170:intron 40.0%
TAGGTAAGCGTAGAGAAAAG+TGG + chr4_1:54244133-54244152 None:intergenic 40.0%
! CGATTTTCCGTAAAAGCTCT+CGG - chr4_1:54244274-54244293 Msa0556170:CDS 40.0%
! CATTCTTCCGAGAGCTTTTA+CGG + chr4_1:54244284-54244303 None:intergenic 40.0%
GTGGTGTAGTAATGAAGCTA+AGG - chr4_1:54244672-54244691 Msa0556170:intron 40.0%
ATGCCTTGAGGCTCAATAAA+TGG - chr4_1:54244721-54244740 Msa0556170:intron 40.0%
GATAAATGATGTTGAGCCAG+AGG + chr4_1:54244795-54244814 None:intergenic 40.0%
! CAGGCAGAAGCATAATTTGA+TGG + chr4_1:54244878-54244897 None:intergenic 40.0%
GGGAAAGATGCAAGACAAAT+GGG + chr4_1:54245065-54245084 None:intergenic 40.0%
AGTTTCCTTGTCAAGTGAAG+GGG + chr4_1:54245086-54245105 None:intergenic 40.0%
GAGTTTCCTTGTCAAGTGAA+GGG + chr4_1:54245087-54245106 None:intergenic 40.0%
CTTCACTTGACAAGGAAACT+CGG - chr4_1:54245086-54245105 Msa0556170:intron 40.0%
TTCACTTGACAAGGAAACTC+GGG - chr4_1:54245087-54245106 Msa0556170:intron 40.0%
! GAAACTCGGGATACAGTTTT+AGG - chr4_1:54245100-54245119 Msa0556170:intron 40.0%
ATCTCTTCCGAGTTATATGC+AGG - chr4_1:54245132-54245151 Msa0556170:intron 40.0%
TCTCTTCCGAGTTATATGCA+GGG - chr4_1:54245133-54245152 Msa0556170:intron 40.0%
AAGCATCCCTGCATATAACT+CGG + chr4_1:54245142-54245161 None:intergenic 40.0%
TCAACAGAAAAGAGTCCATC+AGG + chr4_1:54245371-54245390 None:intergenic 40.0%
!! TGGACTCTTTTCTGTTGACT+TGG - chr4_1:54245373-54245392 Msa0556170:intron 40.0%
!! CCATTCGCTCTGAAACATAA+TGG + chr4_1:54245518-54245537 None:intergenic 40.0%
CCATTATGTTTCAGAGCGAA+TGG - chr4_1:54245515-54245534 Msa0556170:intron 40.0%
ACCAAGCAAGTTCAACTTCT+TGG - chr4_1:54246041-54246060 Msa0556170:intron 40.0%
! TCCAAGAAGTTGAACTTGCT+TGG + chr4_1:54246045-54246064 None:intergenic 40.0%
AGTTCAACTTCTTGGACAGA+AGG - chr4_1:54246049-54246068 Msa0556170:intron 40.0%
AGGTTGCCCTTACTTCAATA+AGG - chr4_1:54246069-54246088 Msa0556170:intron 40.0%
GCGCAAAATGCTACAATGAT+TGG + chr4_1:54246321-54246340 None:intergenic 40.0%
! TGCCACTTGAAATGCTTTGT+CGG + chr4_1:54246343-54246362 None:intergenic 40.0%
CAACCCTTTCAGCTAAAAAG+AGG + chr4_1:54246489-54246508 None:intergenic 40.0%
GTTGTAACATTCTTCCCATG+AGG - chr4_1:54246505-54246524 Msa0556170:intron 40.0%
AGTAACAAAGTCACCCTCAT+GGG + chr4_1:54246522-54246541 None:intergenic 40.0%
CACAGTAACAGCTTAGAAAG+TGG + chr4_1:54246560-54246579 None:intergenic 40.0%
AGCAGAAGAGGAAGCAGAAA+AGG + chr4_1:54241663-54241682 None:intergenic 45.0%
! CTGGTACCAATTTGGCTTCA+AGG - chr4_1:54241711-54241730 Msa0556170:CDS 45.0%
GAAAGCCCTTGAAGCCAAAT+TGG + chr4_1:54241720-54241739 None:intergenic 45.0%
TGGCTTCAAGGGCTTTCTTT+CGG - chr4_1:54241723-54241742 Msa0556170:CDS 45.0%
AATTGGGTATGGCTGTGATG+TGG - chr4_1:54241900-54241919 Msa0556170:CDS 45.0%
ATTGGGTATGGCTGTGATGT+GGG - chr4_1:54241901-54241920 Msa0556170:CDS 45.0%
GCACTGCTAATCACATGTGT+CGG - chr4_1:54241984-54242003 Msa0556170:CDS 45.0%
! CGGACACACTTTTGATCACA+AGG + chr4_1:54242069-54242088 None:intergenic 45.0%
GTATGGGACACAACAAGTGT+CGG + chr4_1:54242089-54242108 None:intergenic 45.0%
! ATGTCATGTCGTGTCGGTAT+GGG + chr4_1:54242105-54242124 None:intergenic 45.0%
! TATGTCATGTCGTGTCGGTA+TGG + chr4_1:54242106-54242125 None:intergenic 45.0%
CTTGTCAATCGCAGATTGCA+CGG - chr4_1:54242230-54242249 Msa0556170:CDS 45.0%
TTGTCAATCGCAGATTGCAC+GGG - chr4_1:54242231-54242250 Msa0556170:CDS 45.0%
ACAATCCTGCTAGATGCTAG+TGG - chr4_1:54242387-54242406 Msa0556170:intron 45.0%
CAATCCTGCTAGATGCTAGT+GGG - chr4_1:54242388-54242407 Msa0556170:intron 45.0%
CTTTCCTAGCAAGCAATCAC+AGG + chr4_1:54242537-54242556 None:intergenic 45.0%
! CTGTGATTGCTTGCTAGGAA+AGG - chr4_1:54242535-54242554 Msa0556170:CDS 45.0%
! GTGATTGCTTGCTAGGAAAG+GGG - chr4_1:54242537-54242556 Msa0556170:CDS 45.0%
! TGATTGCTTGCTAGGAAAGG+GGG - chr4_1:54242538-54242557 Msa0556170:CDS 45.0%
GTCTGTAAACCGATCAATGG+GGG + chr4_1:54242766-54242785 None:intergenic 45.0%
!!! CGACACTCATTTTGAAACGG+AGG + chr4_1:54243017-54243036 None:intergenic 45.0%
! CGACACTCATTTGAAACGGA+GGG - chr4_1:54243269-54243288 Msa0556170:intron 45.0%
CCAGCATCACAATATGCAAC+TGG + chr4_1:54243501-54243520 None:intergenic 45.0%
CCAGTTGCATATTGTGATGC+TGG - chr4_1:54243498-54243517 Msa0556170:intron 45.0%
AGGGAACAACCAGATCAACA+CGG + chr4_1:54243782-54243801 None:intergenic 45.0%
TGGTTCAGCTTCTCCTTAAG+AGG + chr4_1:54244252-54244271 None:intergenic 45.0%
AGGCCATTTATTGAGCCTCA+AGG + chr4_1:54244727-54244746 None:intergenic 45.0%
!! AATTTGATGGGCTGATGACG+AGG + chr4_1:54244865-54244884 None:intergenic 45.0%
GGGGAAAGATGCAAGACAAA+TGG + chr4_1:54245066-54245085 None:intergenic 45.0%
GTTTCCTTGTCAAGTGAAGG+GGG + chr4_1:54245085-54245104 None:intergenic 45.0%
CGAGTTTCCTTGTCAAGTGA+AGG + chr4_1:54245088-54245107 None:intergenic 45.0%
ATGTTTCAGAGCGAATGGCT+TGG - chr4_1:54245520-54245539 Msa0556170:intron 45.0%
TTATGCACAGGACACATGCT+AGG - chr4_1:54245915-54245934 Msa0556170:intron 45.0%
! GCATCATGGGTTGTTCAAGT+AGG - chr4_1:54245945-54245964 Msa0556170:intron 45.0%
! ATGGGTTGTTCAAGTAGGCA+TGG - chr4_1:54245950-54245969 Msa0556170:intron 45.0%
ACTGTCTTCGTCATCGTCAT+TGG + chr4_1:54246009-54246028 None:intergenic 45.0%
GCCCTTACTTCAATAAGGTG+TGG - chr4_1:54246074-54246093 Msa0556170:intron 45.0%
! TTTTTGCCTCCATAGGAGCA+GGG - chr4_1:54246108-54246127 Msa0556170:intron 45.0%
!! TTCTTTTCAGGATGTGCTGC+TGG - chr4_1:54246282-54246301 Msa0556170:intron 45.0%
CAGTAACAAAGTCACCCTCA+TGG + chr4_1:54246523-54246542 None:intergenic 45.0%
CGACACTAACATGTCGCCAT+TGG + chr4_1:54242173-54242192 None:intergenic 50.0%
ATCGCAGATTGCACGGGAAA+TGG - chr4_1:54242237-54242256 Msa0556170:CDS 50.0%
GTATCCCACTAGCATCTAGC+AGG + chr4_1:54242395-54242414 None:intergenic 50.0%
GTGACCTGTGATTGCTTGCT+AGG - chr4_1:54242530-54242549 Msa0556170:CDS 50.0%
TTGCTAGGAAAGGGGGACAA+GGG - chr4_1:54242545-54242564 Msa0556170:CDS 50.0%
! GCGACACTCATTTGAAACGG+AGG - chr4_1:54243268-54243287 Msa0556170:intron 50.0%
ACCAGATCAACACGGTGTTC+TGG + chr4_1:54243774-54243793 None:intergenic 50.0%
GAGCTCTACAAACAGCTGAG+TGG + chr4_1:54244579-54244598 None:intergenic 50.0%
GTTGAGCCAGAGGAGAAAAC+AGG + chr4_1:54244785-54244804 None:intergenic 50.0%
! CAAAGAAGGTAGGGAAGTGC+AGG + chr4_1:54244897-54244916 None:intergenic 50.0%
CTTTCCCCCTTCACTTGACA+AGG - chr4_1:54245078-54245097 Msa0556170:intron 50.0%
TCCTAGATCAGCTACTCGCA+AGG - chr4_1:54245747-54245766 Msa0556170:intron 50.0%
GTGGGCAGAACAACATTCAG+AGG - chr4_1:54245808-54245827 Msa0556170:intron 50.0%
TGCTAGGAGTTGCAGCATCA+TGG - chr4_1:54245931-54245950 Msa0556170:intron 50.0%
GCTAGGAGTTGCAGCATCAT+GGG - chr4_1:54245932-54245951 Msa0556170:intron 50.0%
! GTTTTTGCCTCCATAGGAGC+AGG - chr4_1:54246107-54246126 Msa0556170:intron 50.0%
ACCCTTGTTCGTCCATCACT+TGG - chr4_1:54246140-54246159 Msa0556170:intron 50.0%
!! GCCAAGTGATGGACGAACAA+GGG + chr4_1:54246144-54246163 None:intergenic 50.0%
! AGGATGTGCTGCTGGTGATT+TGG - chr4_1:54246290-54246309 Msa0556170:intron 50.0%
!! TGTGCTGCTGGTGATTTGGT+TGG - chr4_1:54246294-54246313 Msa0556170:CDS 50.0%
! CGCCGACAAAGCATTTCAAG+TGG - chr4_1:54246338-54246357 Msa0556170:CDS 50.0%
TGCAGCTACAGCAGCAGAAG+AGG + chr4_1:54241675-54241694 None:intergenic 55.0%
! GCAGCTGCTTCTTTTGCTGC+TGG - chr4_1:54241692-54241711 Msa0556170:CDS 55.0%
CTTGCTAGGAAAGGGGGACA+AGG - chr4_1:54242544-54242563 Msa0556170:CDS 55.0%
AGGTTATGGGGTCATGGGAG+TGG - chr4_1:54242608-54242627 Msa0556170:intron 55.0%
TATGGGGTCATGGGAGTGGT+AGG - chr4_1:54242612-54242631 Msa0556170:intron 55.0%
ATGGGGTCATGGGAGTGGTA+GGG - chr4_1:54242613-54242632 Msa0556170:intron 55.0%
GGGAGTGGTAGGGTTTAGCT+AGG - chr4_1:54242623-54242642 Msa0556170:intron 55.0%
! GCCAGAACACCGTGTTGATC+TGG - chr4_1:54243770-54243789 Msa0556170:intron 55.0%
! GCATGGCCTGTTTTCTCCTC+TGG - chr4_1:54244776-54244795 Msa0556170:intron 55.0%
GCCTTGCGAGTAGCTGATCT+AGG + chr4_1:54245751-54245770 None:intergenic 55.0%
!! GGCCAAGTGATGGACGAACA+AGG + chr4_1:54246145-54246164 None:intergenic 55.0%
TTCGTCCATCACTTGGCCAG+TGG - chr4_1:54246147-54246166 Msa0556170:intron 55.0%
CCAATCCACTGGCCAAGTGA+TGG + chr4_1:54246155-54246174 None:intergenic 55.0%
CCATCACTTGGCCAGTGGAT+TGG - chr4_1:54246152-54246171 Msa0556170:intron 55.0%
CACAAGGATCGGCGCTACAG+TGG + chr4_1:54242053-54242072 None:intergenic 60.0%
TCTGCACGCGGCTCCAAAAG+AGG + chr4_1:54243705-54243724 None:intergenic 60.0%
CAGCTACTCGCAAGGCTGCA+AGG - chr4_1:54245755-54245774 Msa0556170:intron 60.0%
GCCTCCATAGGAGCAGGGAT+CGG - chr4_1:54246113-54246132 Msa0556170:intron 60.0%
ACCGATCCCTGCTCCTATGG+AGG + chr4_1:54246117-54246136 None:intergenic 60.0%
!! AGCACCGATCCCTGCTCCTA+TGG + chr4_1:54246120-54246139 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 54241427 54246608 54241427 ID=Msa0556170;Name=Msa0556170
chr4_1 mRNA 54241427 54246608 54241427 ID=Msa0556170-mRNA-1;Parent=Msa0556170;Name=Msa0556170-mRNA-1;_AED=0.08;_eAED=0.08;_QI=143|1|1|1|0.83|0.71|7|240|330
chr4_1 exon 54241427 54241743 54241427 ID=Msa0556170-mRNA-1:exon:15947;Parent=Msa0556170-mRNA-1
chr4_1 exon 54241862 54242110 54241862 ID=Msa0556170-mRNA-1:exon:15946;Parent=Msa0556170-mRNA-1
chr4_1 exon 54242206 54242292 54242206 ID=Msa0556170-mRNA-1:exon:15945;Parent=Msa0556170-mRNA-1
chr4_1 exon 54242480 54242564 54242480 ID=Msa0556170-mRNA-1:exon:15944;Parent=Msa0556170-mRNA-1
chr4_1 exon 54244202 54244541 54244202 ID=Msa0556170-mRNA-1:exon:15943;Parent=Msa0556170-mRNA-1
chr4_1 exon 54246291 54246500 54246291 ID=Msa0556170-mRNA-1:exon:15942;Parent=Msa0556170-mRNA-1
chr4_1 exon 54246521 54246608 54246521 ID=Msa0556170-mRNA-1:exon:15941;Parent=Msa0556170-mRNA-1
chr4_1 five_prime_UTR 54246521 54246608 54246521 ID=Msa0556170-mRNA-1:five_prime_utr;Parent=Msa0556170-mRNA-1
chr4_1 five_prime_UTR 54246446 54246500 54246446 ID=Msa0556170-mRNA-1:five_prime_utr;Parent=Msa0556170-mRNA-1
chr4_1 CDS 54246291 54246445 54246291 ID=Msa0556170-mRNA-1:cds;Parent=Msa0556170-mRNA-1
chr4_1 CDS 54244202 54244541 54244202 ID=Msa0556170-mRNA-1:cds;Parent=Msa0556170-mRNA-1
chr4_1 CDS 54242480 54242564 54242480 ID=Msa0556170-mRNA-1:cds;Parent=Msa0556170-mRNA-1
chr4_1 CDS 54242206 54242292 54242206 ID=Msa0556170-mRNA-1:cds;Parent=Msa0556170-mRNA-1
chr4_1 CDS 54241862 54242110 54241862 ID=Msa0556170-mRNA-1:cds;Parent=Msa0556170-mRNA-1
chr4_1 CDS 54241667 54241743 54241667 ID=Msa0556170-mRNA-1:cds;Parent=Msa0556170-mRNA-1
chr4_1 three_prime_UTR 54241427 54241666 54241427 ID=Msa0556170-mRNA-1:three_prime_utr;Parent=Msa0556170-mRNA-1
Gene Sequence

>Msa0556170

ATGGCGGGAATAGCTATACTTGTAGATCTATGGAGGAAGAATCATAATTCTGCTTTTCAATCTTCTTCGGCCTTTTCTGCTTCCTCTTCTGCTGCTGTAGCTGCAGCTGCTTCTTTTGCTGCTGGTACCAATTTGGCTTCAAGGGCTTTCTTTCGTATACCAGTTGCATATTGTGATGCTGGCGCCACAGTATCTGAAGATCTTATTTCTACTATACAAAGTGCTTCTGAAAGGATTTACAATTATGATGCCGAAAGATTTAGTACAAAAACGTACAATGTCCAACCTAAACCTCTATTCTCTGCTTTTGAATTGAGGTCACTTGCAATGACTTCAATAAGGTCATTCCTGATGCACTATTTGCCTCTTTTGGAGCCGCGTGCAGAAATAGAAGATCTTGATGACTTATTTGAGAATATTACGGAGGAACAGCCAGAACACCGTGTTGATCTGGTTGTTCCCTTCAAAAAGTCTGTGAAGCAAATCATACGTGAGACAAGTGTTGTGACCACTCGAAGAATATTAGAAAGAATTGCTGTCCATTATGTTTCAGAGCGAATGGCTTGGAAACTTCTTAAAGATGTTCCTAGATCAGCTACTCGCAAGGCTGCAAGGAATATGCCTACTTATGTTTACTTCTTTTCTGTGGGCAGAACAACATTCAGAGGACACATGCTAGGAGTTGCAGCATCATGGGTTGTTCAAGTAGGCATGGAACTGTATCGATTCTTTAGATCCATTTTCAATGCCAATGACGATGACGAAGACAGTAATGTCGATACAACCAAGCAAGTTCAACTTCTTGGACAGAAGGTTGCCCTTACTTCAATAAGGTGTGGTTCATCTTTAGTTTTTGCCTCCATAGGAGCAGGGATCGGTGCTACCCTTGTTCGTCCATCACTTGGCCAGTGGATTGGATGTGCTGCTGGTGATTTGGTTGGTCCAATCATTGTAGCATTTTGCGCCGACAAAGCATTTCAAGTGGCACTTTAG

Protein sequence

>Msa0556170

MAGIAILVDLWRKNHNSAFQSSSAFSASSSAAVAAAASFAAGTNLASRAFFRIPVAYCDAGATVSEDLISTIQSASERIYNYDAERFSTKTYNVQPKPLFSAFELRSLAMTSIRSFLMHYLPLLEPRAEIEDLDDLFENITEEQPEHRVDLVVPFKKSVKQIIRETSVVTTRRILERIAVHYVSERMAWKLLKDVPRSATRKAARNMPTYVYFFSVGRTTFRGHMLGVAASWVVQVGMELYRFFRSIFNANDDDEDSNVDTTKQVQLLGQKVALTSIRCGSSLVFASIGAGIGATLVRPSLGQWIGCAAGDLVGPIIVAFCADKAFQVAL*