Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0556170 | XP_003607978.1 | 93.731 | 335 | 7 | 4 | 1 | 330 | 1 | 326 | 0.0 | 589 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0556170 | G7JL88 | 93.731 | 335 | 7 | 4 | 1 | 330 | 1 | 326 | 0.0 | 589 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000560 | Msa0556170 | 0.822017 | 2.965497e-53 | -8.615850e-47 |
| Msa0137880 | Msa0556170 | 0.804249 | 2.365235e-49 | -8.615850e-47 |
| Msa0174450 | Msa0556170 | 0.802729 | 4.886623e-49 | -8.615850e-47 |
| Msa0424160 | Msa0556170 | 0.804642 | 1.958354e-49 | -8.615850e-47 |
| Msa0267110 | Msa0556170 | 0.814430 | 1.546557e-51 | -8.615850e-47 |
| Msa0556170 | Msa0694200 | 0.982550 | 2.209674e-155 | -8.615850e-47 |
| Msa0556170 | Msa1080000 | 0.810544 | 1.093519e-50 | -8.615850e-47 |
| Msa0556170 | Msa1113340 | 0.819010 | 1.453689e-52 | -8.615850e-47 |
| Msa0556170 | Msa1123210 | 0.823596 | 1.272403e-53 | -8.615850e-47 |
| Msa0556170 | Msa1130280 | 0.822757 | 1.997100e-53 | -8.615850e-47 |
| Msa0556170 | Msa1160910 | 0.821967 | 3.046271e-53 | -8.615850e-47 |
| Msa0556170 | Msa1217050 | 0.801340 | 9.431787e-49 | -8.615850e-47 |
| Msa0556170 | Msa1217210 | 0.838236 | 3.241657e-57 | -8.615850e-47 |
| Msa0556170 | Msa1413620 | 0.801530 | 8.622467e-49 | -8.615850e-47 |
| Msa0556170 | Msa1431480 | 0.809379 | 1.948397e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0556170 | MtrunA17_Chr4g0044891 | 93.731 | 335 | 7 | 4 | 1 | 330 | 1 | 326 | 0.0 | 589 |
| Msa0556170 | MtrunA17_Chr6g0449901 | 89.080 | 348 | 18 | 4 | 1 | 330 | 1 | 346 | 0.0 | 574 |
| Msa0556170 | MtrunA17_Chr4g0027081 | 52.679 | 336 | 143 | 6 | 1 | 330 | 1 | 326 | 6.02e-123 | 356 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0556170 | AT5G55610.1 | 51.343 | 335 | 146 | 4 | 1 | 327 | 1 | 326 | 6.46e-105 | 310 |
| Msa0556170 | AT5G55610.2 | 50.649 | 231 | 97 | 4 | 1 | 223 | 1 | 222 | 2.64e-59 | 192 |
Find 80 sgRNAs with CRISPR-Local
Find 312 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGAGCTACTAACTTGAATT+TGG | 0.185964 | 4_1:-54241554 | Msa0556170:three_prime_UTR |
| GATGCACTATTTGCCTCTTT+TGG | 0.231224 | 4_1:-54244324 | Msa0556170:CDS |
| ACCAAGCAAGTTCAACTTCT+TGG | 0.236486 | 4_1:-54241972 | Msa0556170:CDS |
| GGTTTCTGTTGCAAAGCTTT+TGG | 0.255658 | 4_1:+54246562 | None:intergenic |
| ATGGCTTGGAAACTTCTTAA+AGG | 0.268888 | 4_1:-54242479 | Msa0556170:intron |
| AAAGCAGAGAATAGAGGTTT+AGG | 0.295661 | 4_1:+54244389 | None:intergenic |
| ATCGTCATTGGCATTGAAAA+TGG | 0.334939 | 4_1:+54242019 | None:intergenic |
| TAGCTATACTTGTAGATCTA+TGG | 0.335649 | 4_1:-54246413 | Msa0556170:CDS |
| GAAAGCCCTTGAAGCCAAAT+TGG | 0.344438 | 4_1:+54246296 | None:intergenic |
| CTGGTACCAATTTGGCTTCA+AGG | 0.345953 | 4_1:-54246302 | Msa0556170:CDS |
| AGGATGTGCTGCTGGTGATT+TGG | 0.382760 | 4_1:-54241723 | Msa0556170:CDS |
| AGGTTGCCCTTACTTCAATA+AGG | 0.392106 | 4_1:-54241944 | Msa0556170:CDS |
| TGGCTTCAAGGGCTTTCTTT+CGG | 0.394306 | 4_1:-54246290 | Msa0556170:intron |
| ACCAGATCAACACGGTGTTC+TGG | 0.408130 | 4_1:+54244242 | None:intergenic |
| TGACTTATTTGAGAATATTA+CGG | 0.410949 | 4_1:-54244273 | Msa0556170:CDS |
| CCATTCGCTCTGAAACATAA+TGG | 0.424104 | 4_1:+54242498 | None:intergenic |
| AGCAGAAGAGGAAGCAGAAA+AGG | 0.434687 | 4_1:+54246353 | None:intergenic |
| AAAGAGGCAAATAGTGCATC+AGG | 0.438648 | 4_1:+54244327 | None:intergenic |
| GCGCAAAATGCTACAATGAT+TGG | 0.438885 | 4_1:+54241695 | None:intergenic |
| ACTGTCTTCGTCATCGTCAT+TGG | 0.446980 | 4_1:+54242007 | None:intergenic |
| TGCCACTTGAAATGCTTTGT+CGG | 0.447275 | 4_1:+54241673 | None:intergenic |
| AACCACACCTTATTGAAGTA+AGG | 0.448289 | 4_1:+54241937 | None:intergenic |
| AATTTGAAACGGAGGCAATA+AGG | 0.450658 | 4_1:+54246541 | None:intergenic |
| TCCAAGAAGTTGAACTTGCT+TGG | 0.452273 | 4_1:+54241971 | None:intergenic |
| CACTTGCAATGACTTCAATA+AGG | 0.453405 | 4_1:-54244355 | Msa0556170:CDS |
| GCCAGAACACCGTGTTGATC+TGG | 0.456801 | 4_1:-54244243 | Msa0556170:CDS |
| TGGTACCAATTTGGCTTCAA+GGG | 0.457675 | 4_1:-54246301 | Msa0556170:CDS |
| ACCCTTGTTCGTCCATCACT+TGG | 0.457968 | 4_1:-54241873 | Msa0556170:CDS |
| TGCTAGGAGTTGCAGCATCA+TGG | 0.479028 | 4_1:-54242082 | Msa0556170:CDS |
| AATTCAAAAGCAGAGAATAG+AGG | 0.479918 | 4_1:+54244383 | None:intergenic |
| AGCACCGATCCCTGCTCCTA+TGG | 0.484318 | 4_1:+54241896 | None:intergenic |
| CACAGTAACAGCTTAGAAAG+TGG | 0.484571 | 4_1:+54241456 | None:intergenic |
| TGCAGCTACAGCAGCAGAAG+AGG | 0.485508 | 4_1:+54246341 | None:intergenic |
| CCATCACTTGGCCAGTGGAT+TGG | 0.485537 | 4_1:-54241861 | Msa0556170:intron |
| GAAAAGAAGTAAACATAAGT+AGG | 0.487456 | 4_1:+54242229 | None:intergenic |
| CATCGTTGTTGAATTTGAAA+CGG | 0.489227 | 4_1:+54246530 | None:intergenic |
| CCAGCATCACAATATGCAAC+TGG | 0.492213 | 4_1:+54244515 | None:intergenic |
| GCCTTGCGAGTAGCTGATCT+AGG | 0.494720 | 4_1:+54242265 | None:intergenic |
| CAGAGAATAGAGGTTTAGGT+TGG | 0.496669 | 4_1:+54244393 | None:intergenic |
| CCATTATGTTTCAGAGCGAA+TGG | 0.519354 | 4_1:-54242498 | Msa0556170:CDS |
| CCAGTTGCATATTGTGATGC+TGG | 0.519689 | 4_1:-54244515 | Msa0556170:CDS |
| TTATGATCTTACCAATCCAC+TGG | 0.520316 | 4_1:+54241850 | None:intergenic |
| CGCCGACAAAGCATTTCAAG+TGG | 0.520834 | 4_1:-54241675 | Msa0556170:CDS |
| TTCGTCCATCACTTGGCCAG+TGG | 0.522512 | 4_1:-54241866 | Msa0556170:CDS |
| GCTAGGAGTTGCAGCATCAT+GGG | 0.526174 | 4_1:-54242081 | Msa0556170:CDS |
| GCCCTTACTTCAATAAGGTG+TGG | 0.528158 | 4_1:-54241939 | Msa0556170:CDS |
| AGTTCAACTTCTTGGACAGA+AGG | 0.529384 | 4_1:-54241964 | Msa0556170:CDS |
| TCTGCACGCGGCTCCAAAAG+AGG | 0.538832 | 4_1:+54244311 | None:intergenic |
| TGTGCTGCTGGTGATTTGGT+TGG | 0.542559 | 4_1:-54241719 | Msa0556170:CDS |
| CAGCTACTCGCAAGGCTGCA+AGG | 0.544366 | 4_1:-54242258 | Msa0556170:CDS |
| GCCTCCATAGGAGCAGGGAT+CGG | 0.554442 | 4_1:-54241900 | Msa0556170:CDS |
| TCTTTCTAATATTCTTCGAG+TGG | 0.562654 | 4_1:+54242529 | None:intergenic |
| CCAATCCACTGGCCAAGTGA+TGG | 0.565048 | 4_1:+54241861 | None:intergenic |
| ACAACACAAGTAACAATGGC+GGG | 0.567663 | 4_1:-54246438 | Msa0556170:exon |
| CGTTGTTGAATTTGAAACGG+AGG | 0.569269 | 4_1:+54246533 | None:intergenic |
| TTTACAAACCTCAAAATGAA+CGG | 0.569781 | 4_1:-54241619 | Msa0556170:three_prime_UTR |
| AGTAACAAAGTCACCCTCAT+GGG | 0.577849 | 4_1:+54241494 | None:intergenic |
| ATGGGTTGTTCAAGTAGGCA+TGG | 0.578157 | 4_1:-54242063 | Msa0556170:CDS |
| GCATCATGGGTTGTTCAAGT+AGG | 0.587111 | 4_1:-54242068 | Msa0556170:CDS |
| CAGTAACAAAGTCACCCTCA+TGG | 0.590913 | 4_1:+54241493 | None:intergenic |
| ATGTTTCAGAGCGAATGGCT+TGG | 0.594195 | 4_1:-54242493 | Msa0556170:CDS |
| CTATACAAAGTGCTTCTGAA+AGG | 0.598512 | 4_1:-54244463 | Msa0556170:CDS |
| TTGTAACATTCTTCCCATGA+GGG | 0.598724 | 4_1:-54241507 | Msa0556170:three_prime_UTR |
| TTATGCACAGGACACATGCT+AGG | 0.599684 | 4_1:-54242098 | Msa0556170:intron |
| ACCACACCTTATTGAAGTAA+GGG | 0.601634 | 4_1:+54241938 | None:intergenic |
| GGCCAAGTGATGGACGAACA+AGG | 0.608320 | 4_1:+54241871 | None:intergenic |
| TTAAAAGTCACAACAAAACA+AGG | 0.614671 | 4_1:+54246476 | None:intergenic |
| ACCGATCCCTGCTCCTATGG+AGG | 0.615889 | 4_1:+54241899 | None:intergenic |
| TCCTAGATCAGCTACTCGCA+AGG | 0.622944 | 4_1:-54242266 | Msa0556170:CDS |
| AAGAACAACACAAGTAACAA+TGG | 0.628282 | 4_1:-54246442 | Msa0556170:exon |
| CTATACTTGTAGATCTATGG+AGG | 0.630412 | 4_1:-54246410 | Msa0556170:CDS |
| GCCAAGTGATGGACGAACAA+GGG | 0.637107 | 4_1:+54241872 | None:intergenic |
| GTTGTAACATTCTTCCCATG+AGG | 0.645898 | 4_1:-54241508 | Msa0556170:three_prime_UTR |
| AATAAGATCTTCAGATACTG+TGG | 0.646098 | 4_1:+54244490 | None:intergenic |
| AGATCTTCTATTTCTGCACG+CGG | 0.653709 | 4_1:+54244299 | None:intergenic |
| AACAACACAAGTAACAATGG+CGG | 0.655953 | 4_1:-54246439 | Msa0556170:exon |
| CTTATTTGAGAATATTACGG+AGG | 0.657164 | 4_1:-54244270 | Msa0556170:CDS |
| GTGGGCAGAACAACATTCAG+AGG | 0.670489 | 4_1:-54242205 | Msa0556170:intron |
| TGTGAAGCAAATCATACGTG+AGG | 0.685919 | 4_1:-54244201 | Msa0556170:intron |
| AGGGAACAACCAGATCAACA+CGG | 0.751632 | 4_1:+54244234 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAAGAAAAAATAATACTT+TGG | + | chr4_1:54243150-54243169 | None:intergenic | 10.0% |
| !!! | TTTTAACATCCAAATAAAAA+GGG | + | chr4_1:54241771-54241790 | None:intergenic | 15.0% |
| !!! | TTTTTAACATCCAAATAAAA+AGG | + | chr4_1:54241772-54241791 | None:intergenic | 15.0% |
| !!! | TTAATATTCATTCAGATTTT+AGG | - | chr4_1:54241924-54241943 | Msa0556170:CDS | 15.0% |
| !!! | TAATATTCATTCAGATTTTA+GGG | - | chr4_1:54241925-54241944 | Msa0556170:CDS | 15.0% |
| !!! | AATAATAATTTGTTCCAATT+TGG | - | chr4_1:54242328-54242347 | Msa0556170:intron | 15.0% |
| !!! | CATTTTGAAACAATTTTTTT+TGG | + | chr4_1:54243046-54243065 | None:intergenic | 15.0% |
| !! | TAAATACTTCAAAATATTCA+AGG | - | chr4_1:54243319-54243338 | Msa0556170:intron | 15.0% |
| !! | AAATACTTCAAAATATTCAA+GGG | - | chr4_1:54243320-54243339 | Msa0556170:intron | 15.0% |
| !!! | TATAATTTTTCGTTGTATTT+TGG | - | chr4_1:54243410-54243429 | Msa0556170:intron | 15.0% |
| !!! | TTTTTTTTGTTTTCAAAACT+CGG | - | chr4_1:54243929-54243948 | Msa0556170:intron | 15.0% |
| !! | AATAAACATATTAATTGAGT+TGG | - | chr4_1:54244075-54244094 | Msa0556170:intron | 15.0% |
| !! | ATAAGTATGAATTAAAAAGT+AGG | + | chr4_1:54244152-54244171 | None:intergenic | 15.0% |
| !!! | TTTTTAATTCATACTTATGT+AGG | - | chr4_1:54244154-54244173 | Msa0556170:intron | 15.0% |
| !!! | ATCTTGGTTTTATAATTTTA+AGG | - | chr4_1:54244506-54244525 | Msa0556170:CDS | 15.0% |
| !!! | TTATAATTTTAAGGAGTATA+TGG | - | chr4_1:54244515-54244534 | Msa0556170:CDS | 15.0% |
| !! | TAAGGTTAAATTATCGTATT+GGG | + | chr4_1:54241514-54241533 | None:intergenic | 20.0% |
| !! | TTAAGGTTAAATTATCGTAT+TGG | + | chr4_1:54241515-54241534 | None:intergenic | 20.0% |
| !!! | TTTTGATATTGTTTTTGAGA+TGG | - | chr4_1:54241797-54241816 | Msa0556170:intron | 20.0% |
| !!! | TTTGATATTGTTTTTGAGAT+GGG | - | chr4_1:54241798-54241817 | Msa0556170:intron | 20.0% |
| !!! | AATATTCATTCAGATTTTAG+GGG | - | chr4_1:54241926-54241945 | Msa0556170:CDS | 20.0% |
| !!! | TGATTAATGACTAGTATTTT+CGG | - | chr4_1:54242688-54242707 | Msa0556170:intron | 20.0% |
| !!! | ATTTTCAAACTTCAATAACT+TGG | - | chr4_1:54242735-54242754 | Msa0556170:intron | 20.0% |
| !! | GTAACATAGTATTAATTGAA+GGG | + | chr4_1:54243120-54243139 | None:intergenic | 20.0% |
| !! | TGTAACATAGTATTAATTGA+AGG | + | chr4_1:54243121-54243140 | None:intergenic | 20.0% |
| !! | AAATTATCCTAATCAACTAT+TGG | + | chr4_1:54243184-54243203 | None:intergenic | 20.0% |
| !! | AATAGTTGATTAGGATAATT+TGG | - | chr4_1:54243183-54243202 | Msa0556170:intron | 20.0% |
| !! | AATACTTCAAAATATTCAAG+GGG | - | chr4_1:54243321-54243340 | Msa0556170:intron | 20.0% |
| !! | TGACTTATTTGAGAATATTA+CGG | - | chr4_1:54243740-54243759 | Msa0556170:intron | 20.0% |
| !!! | TCTTGTTTTAACATTTAGTT+AGG | - | chr4_1:54243854-54243873 | Msa0556170:intron | 20.0% |
| !!! | TCTCATTTATTTTGAAATCT+TGG | - | chr4_1:54244490-54244509 | Msa0556170:CDS | 20.0% |
| !! | GTCAAATAAGTTTCAAAAAT+TGG | + | chr4_1:54244621-54244640 | None:intergenic | 20.0% |
| !! | TATGAAAAATAAAGCAAAGA+AGG | + | chr4_1:54244911-54244930 | None:intergenic | 20.0% |
| !! | AAAACTAATTGCTTGAAATT+TGG | + | chr4_1:54245201-54245220 | None:intergenic | 20.0% |
| !!! | TTGACTTGGTAATTTAAAAA+CGG | - | chr4_1:54245387-54245406 | Msa0556170:intron | 20.0% |
| !! | AGTTGAAATGAATTAAAATC+AGG | + | chr4_1:54246241-54246260 | None:intergenic | 20.0% |
| ! | TTAAAAGTCACAACAAAACA+AGG | + | chr4_1:54241540-54241559 | None:intergenic | 25.0% |
| !!! | GGCTTTGGTTATTTTTATAA+GGG | - | chr4_1:54241819-54241838 | Msa0556170:intron | 25.0% |
| !!! | TTTGGTTATTTTTATAAGGG+TGG | - | chr4_1:54241822-54241841 | Msa0556170:intron | 25.0% |
| !!! | GTTTTTTAGTTCAGTTGATT+TGG | - | chr4_1:54241858-54241877 | Msa0556170:intron | 25.0% |
| !!! | ATTTGGTGTTTTGATGATTT+TGG | - | chr4_1:54241875-54241894 | Msa0556170:CDS | 25.0% |
| !!! | TTTGGTGTTTTGATGATTTT+GGG | - | chr4_1:54241876-54241895 | Msa0556170:CDS | 25.0% |
| !!! | TTTTGATGATTTTGGGTAAT+TGG | - | chr4_1:54241883-54241902 | Msa0556170:CDS | 25.0% |
| !!! | TTTGATGATTTTGGGTAATT+GGG | - | chr4_1:54241884-54241903 | Msa0556170:CDS | 25.0% |
| !!! | TTTTAGGGGTTTTTTTATGA+TGG | - | chr4_1:54241940-54241959 | Msa0556170:CDS | 25.0% |
| !!! | TTTAGGGGTTTTTTTATGAT+GGG | - | chr4_1:54241941-54241960 | Msa0556170:CDS | 25.0% |
| !! | TTTTCTCTAACTATAACCAA+TGG | - | chr4_1:54242154-54242173 | Msa0556170:intron | 25.0% |
| !! | TAGTGGGATACATAATTTTT+AGG | - | chr4_1:54242404-54242423 | Msa0556170:intron | 25.0% |
| !! | AGTGGGATACATAATTTTTA+GGG | - | chr4_1:54242405-54242424 | Msa0556170:intron | 25.0% |
| !!! | AGATACTAGTTTTCTAACTT+TGG | - | chr4_1:54242711-54242730 | Msa0556170:intron | 25.0% |
| ! | TGAATCTTTCAAATTTGCAT+TGG | - | chr4_1:54242817-54242836 | Msa0556170:intron | 25.0% |
| ! | AAATTTGCATTGGAATTTGA+TGG | - | chr4_1:54242827-54242846 | Msa0556170:intron | 25.0% |
| ! | GAAGAAAATAATCTGAATTG+TGG | - | chr4_1:54242958-54242977 | Msa0556170:intron | 25.0% |
| ! | AAACAAACCAATAGTTGATT+AGG | - | chr4_1:54243174-54243193 | Msa0556170:intron | 25.0% |
| !! | CGTTTTTGTACTAAATCTTT+CGG | + | chr4_1:54243592-54243611 | None:intergenic | 25.0% |
| ! | AAGATAAGCTAAAAAACGAT+TGG | + | chr4_1:54244227-54244246 | None:intergenic | 25.0% |
| !! | TACTCATTTCTTTTCTCAAA+TGG | + | chr4_1:54244307-54244326 | None:intergenic | 25.0% |
| !! | TTACTAACTTGACTTGATAA+AGG | - | chr4_1:54244360-54244379 | Msa0556170:CDS | 25.0% |
| ! | AAAGAAAATTTAGGTCTCTA+AGG | + | chr4_1:54244747-54244766 | None:intergenic | 25.0% |
| ! | AGTACCAGAAAAGAAAATTT+AGG | + | chr4_1:54244756-54244775 | None:intergenic | 25.0% |
| ! | AAAATAAAGCAAAGAAGGTA+GGG | + | chr4_1:54244906-54244925 | None:intergenic | 25.0% |
| ! | AAAAATAAAGCAAAGAAGGT+AGG | + | chr4_1:54244907-54244926 | None:intergenic | 25.0% |
| ! | TGAACTATTATAGAGTAATG+TGG | + | chr4_1:54245007-54245026 | None:intergenic | 25.0% |
| ! | AGAATAGAATATCATGAAAG+AGG | - | chr4_1:54245235-54245254 | Msa0556170:intron | 25.0% |
| ! | GAAGTAACATGAAATTGAAT+TGG | - | chr4_1:54245285-54245304 | Msa0556170:intron | 25.0% |
| ! | TATTAAACTTTGACTGCTTT+AGG | + | chr4_1:54245623-54245642 | None:intergenic | 25.0% |
| ! | GAAAAGAAGTAAACATAAGT+AGG | + | chr4_1:54245787-54245806 | None:intergenic | 25.0% |
| !! | TTATGTTTACTTCTTTTCTG+TGG | - | chr4_1:54245789-54245808 | Msa0556170:intron | 25.0% |
| !! | TATGTTTACTTCTTTTCTGT+GGG | - | chr4_1:54245790-54245809 | Msa0556170:intron | 25.0% |
| !! | ATAGTTGATATTAAATGCTC+AGG | + | chr4_1:54245874-54245893 | None:intergenic | 25.0% |
| !! | AAAACTTTGTTCTTCTTTTC+AGG | - | chr4_1:54246270-54246289 | Msa0556170:intron | 25.0% |
| ! | TTTACAAACCTCAAAATGAA+CGG | - | chr4_1:54246394-54246413 | Msa0556170:CDS | 25.0% |
| CATCGTTGTTGAATTTGAAA+CGG | + | chr4_1:54241486-54241505 | None:intergenic | 30.0% | |
| ! | CACAACAAAACAAGGTTTTA+AGG | + | chr4_1:54241532-54241551 | None:intergenic | 30.0% |
| AAGAACAACACAAGTAACAA+TGG | - | chr4_1:54241571-54241590 | Msa0556170:three_prime_UTR | 30.0% | |
| TAGCTATACTTGTAGATCTA+TGG | - | chr4_1:54241600-54241619 | Msa0556170:three_prime_UTR | 30.0% | |
| !! | TTCTGCTTTTCAATCTTCTT+CGG | - | chr4_1:54241637-54241656 | Msa0556170:three_prime_UTR | 30.0% |
| !! | TCTTTCGGTATGTTTTTATG+TGG | - | chr4_1:54241738-54241757 | Msa0556170:intron | 30.0% |
| !! | GGAGTATTACCCTTTTTATT+TGG | - | chr4_1:54241759-54241778 | Msa0556170:intron | 30.0% |
| !!! | GGGCTTTGGTTATTTTTATA+AGG | - | chr4_1:54241818-54241837 | Msa0556170:intron | 30.0% |
| ! | ATACACACTTTTGATCAGAA+GGG | - | chr4_1:54242018-54242037 | Msa0556170:CDS | 30.0% |
| !!! | GATACATAATTTTTAGGGTG+CGG | - | chr4_1:54242410-54242429 | Msa0556170:intron | 30.0% |
| AGTTGAAATACTGAGATTTG+AGG | - | chr4_1:54242457-54242476 | Msa0556170:intron | 30.0% | |
| AAATACTGAGATTTGAGGAA+TGG | - | chr4_1:54242462-54242481 | Msa0556170:intron | 30.0% | |
| ATTGTGTGAGAATGAGATAT+AGG | - | chr4_1:54242588-54242607 | Msa0556170:intron | 30.0% | |
| TGAGAATGAGATATAGGTTA+TGG | - | chr4_1:54242594-54242613 | Msa0556170:intron | 30.0% | |
| GAGAATGAGATATAGGTTAT+GGG | - | chr4_1:54242595-54242614 | Msa0556170:intron | 30.0% | |
| AGAATGAGATATAGGTTATG+GGG | - | chr4_1:54242596-54242615 | Msa0556170:intron | 30.0% | |
| TGAAAGATTCATGTATTACG+AGG | + | chr4_1:54242808-54242827 | None:intergenic | 30.0% | |
| TAATATGTAGATGACATGCA+AGG | - | chr4_1:54242861-54242880 | Msa0556170:intron | 30.0% | |
| CCTATATACACAAAGAATCA+TGG | + | chr4_1:54242905-54242924 | None:intergenic | 30.0% | |
| CCATGATTCTTTGTGTATAT+AGG | - | chr4_1:54242902-54242921 | Msa0556170:intron | 30.0% | |
| TTCAAAATATTCAAGGGGTT+AGG | - | chr4_1:54243326-54243345 | Msa0556170:intron | 30.0% | |
| TCAAAATATTCAAGGGGTTA+GGG | - | chr4_1:54243327-54243346 | Msa0556170:intron | 30.0% | |
| ! | TAGGGTTAAGTTCTGTATTT+TGG | - | chr4_1:54243345-54243364 | Msa0556170:intron | 30.0% |
| !! | GTTCTGTATTTTGGAAACAT+CGG | - | chr4_1:54243354-54243373 | Msa0556170:intron | 30.0% |
| AGATGTCATGAAACAAAGTA+AGG | + | chr4_1:54243445-54243464 | None:intergenic | 30.0% | |
| ! | ACTTTGTTTCATGACATCTT+TGG | - | chr4_1:54243446-54243465 | Msa0556170:intron | 30.0% |
| CTGGTATACTGAAATTAAAG+AGG | + | chr4_1:54243482-54243501 | None:intergenic | 30.0% | |
| AATAAGATCTTCAGATACTG+TGG | + | chr4_1:54243526-54243545 | None:intergenic | 30.0% | |
| AATTCAAAAGCAGAGAATAG+AGG | + | chr4_1:54243633-54243652 | None:intergenic | 30.0% | |
| !! | TATTCTCTGCTTTTGAATTG+AGG | - | chr4_1:54243634-54243653 | Msa0556170:intron | 30.0% |
| CTTATTTGAGAATATTACGG+AGG | - | chr4_1:54243743-54243762 | Msa0556170:intron | 30.0% | |
| AGATAATTTACTTAGCGAAG+AGG | + | chr4_1:54244043-54244062 | None:intergenic | 30.0% | |
| TGAATCTCTAACTATGTGTA+TGG | - | chr4_1:54244188-54244207 | Msa0556170:intron | 30.0% | |
| AGGTTAACCAATTATTAGTG+TGG | - | chr4_1:54244380-54244399 | Msa0556170:CDS | 30.0% | |
| TAAAGATATTGGGCTCAATT+AGG | + | chr4_1:54244436-54244455 | None:intergenic | 30.0% | |
| AATTGAGCCCAATATCTTTA+AGG | - | chr4_1:54244436-54244455 | Msa0556170:CDS | 30.0% | |
| ! | TCTAGCTCCTTAAAGATATT+GGG | + | chr4_1:54244446-54244465 | None:intergenic | 30.0% |
| !!! | TTCTTTTTGAGTCTAAACAG+TGG | - | chr4_1:54244653-54244672 | Msa0556170:intron | 30.0% |
| ! | GAGACCTAAATTTTCTTTTC+TGG | - | chr4_1:54244749-54244768 | Msa0556170:intron | 30.0% |
| TTGCTTGAAATTTGGAGATA+GGG | + | chr4_1:54245193-54245212 | None:intergenic | 30.0% | |
| ATTGCTTGAAATTTGGAGAT+AGG | + | chr4_1:54245194-54245213 | None:intergenic | 30.0% | |
| TCTTTCTAATATTCTTCGAG+TGG | + | chr4_1:54245487-54245506 | None:intergenic | 30.0% | |
| ! | ACTTCTTAAAGGTATGTTCT+CGG | - | chr4_1:54245545-54245564 | Msa0556170:intron | 30.0% |
| ! | GAAGAACAAAGTTTTGCTTT+AGG | + | chr4_1:54246265-54246284 | None:intergenic | 30.0% |
| ATGAGCTACTAACTTGAATT+TGG | - | chr4_1:54246459-54246478 | Msa0556170:five_prime_UTR | 30.0% | |
| !!! | TTTACCTCTTTTTAGCTGAA+AGG | - | chr4_1:54246482-54246501 | Msa0556170:intron | 30.0% |
| !!! | TTACCTCTTTTTAGCTGAAA+GGG | - | chr4_1:54246483-54246502 | Msa0556170:intron | 30.0% |
| ! | AATTTGAAACGGAGGCAATA+AGG | + | chr4_1:54241475-54241494 | None:intergenic | 35.0% |
| AACAACACAAGTAACAATGG+CGG | - | chr4_1:54241574-54241593 | Msa0556170:three_prime_UTR | 35.0% | |
| CTATACTTGTAGATCTATGG+AGG | - | chr4_1:54241603-54241622 | Msa0556170:three_prime_UTR | 35.0% | |
| !!! | ATTGTTTTTGAGATGGGCTT+TGG | - | chr4_1:54241804-54241823 | Msa0556170:intron | 35.0% |
| !! | TGATTTTGGGTAATTGGGTA+TGG | - | chr4_1:54241889-54241908 | Msa0556170:CDS | 35.0% |
| ! | CATACACACTTTTGATCAGA+AGG | - | chr4_1:54242017-54242036 | Msa0556170:CDS | 35.0% |
| ! | ACACTTTTGATCACAAGGAT+CGG | + | chr4_1:54242064-54242083 | None:intergenic | 35.0% |
| ATGAAGCAATGACATAGAGA+CGG | + | chr4_1:54242201-54242220 | None:intergenic | 35.0% | |
| TCTCTATGTCATTGCTTCAT+AGG | - | chr4_1:54242201-54242220 | Msa0556170:intron | 35.0% | |
| CTCTATGTCATTGCTTCATA+GGG | - | chr4_1:54242202-54242221 | Msa0556170:intron | 35.0% | |
| ATAGTACCACTAACTTAGCA+AGG | - | chr4_1:54242293-54242312 | Msa0556170:intron | 35.0% | |
| TAGTACCACTAACTTAGCAA+GGG | - | chr4_1:54242294-54242313 | Msa0556170:intron | 35.0% | |
| TAATACCCTTGCTAAGTTAG+TGG | + | chr4_1:54242302-54242321 | None:intergenic | 35.0% | |
| TGTAATAGACGTAGCCAAAT+TGG | + | chr4_1:54242345-54242364 | None:intergenic | 35.0% | |
| !!! | TTTTAGGGTGCGGTTAAATT+AGG | - | chr4_1:54242420-54242439 | Msa0556170:intron | 35.0% |
| AAGTCTGTAAACCGATCAAT+GGG | + | chr4_1:54242768-54242787 | None:intergenic | 35.0% | |
| TAAGTCTGTAAACCGATCAA+TGG | + | chr4_1:54242769-54242788 | None:intergenic | 35.0% | |
| TGCATTGGAATTTGATGGAA+AGG | - | chr4_1:54242832-54242851 | Msa0556170:intron | 35.0% | |
| GATGACATGCAAGGAAAAAA+AGG | - | chr4_1:54242870-54242889 | Msa0556170:intron | 35.0% | |
| !! | AAGCGACACTCATTTTGAAA+CGG | + | chr4_1:54243020-54243039 | None:intergenic | 35.0% |
| ATTGCACACAGATTAAGGAA+TGG | + | chr4_1:54243240-54243259 | None:intergenic | 35.0% | |
| TTCCTTAATCTGTGTGCAAT+TGG | - | chr4_1:54243240-54243259 | Msa0556170:intron | 35.0% | |
| AAAGCGACACTCATTTGAAA+CGG | - | chr4_1:54243265-54243284 | Msa0556170:intron | 35.0% | |
| ! | ACATCGGAAGTGTAAAAGAT+TGG | - | chr4_1:54243370-54243389 | Msa0556170:intron | 35.0% |
| ! | CATCGGAAGTGTAAAAGATT+GGG | - | chr4_1:54243371-54243390 | Msa0556170:intron | 35.0% |
| ! | CTATACAAAGTGCTTCTGAA+AGG | - | chr4_1:54243550-54243569 | Msa0556170:intron | 35.0% |
| AAAGCAGAGAATAGAGGTTT+AGG | + | chr4_1:54243627-54243646 | None:intergenic | 35.0% | |
| CACTTGCAATGACTTCAATA+AGG | - | chr4_1:54243658-54243677 | Msa0556170:intron | 35.0% | |
| ! | TGCTTCACAGACTTTTTGAA+GGG | + | chr4_1:54243801-54243820 | None:intergenic | 35.0% |
| ! | TTGCTTCACAGACTTTTTGA+AGG | + | chr4_1:54243802-54243821 | None:intergenic | 35.0% |
| AATGACAAGTCACGTTCTTT+GGG | + | chr4_1:54243962-54243981 | None:intergenic | 35.0% | |
| AAATGACAAGTCACGTTCTT+TGG | + | chr4_1:54243963-54243982 | None:intergenic | 35.0% | |
| TAGCTTATCTTCTCCTCTTA+AGG | - | chr4_1:54244236-54244255 | Msa0556170:CDS | 35.0% | |
| ! | AGCTTTTACGGAAAATCGTT+TGG | + | chr4_1:54244272-54244291 | None:intergenic | 35.0% |
| GTGACATCCACACTAATAAT+TGG | + | chr4_1:54244390-54244409 | None:intergenic | 35.0% | |
| TTAGTGTGGATGTCACATTT+CGG | - | chr4_1:54244394-54244413 | Msa0556170:CDS | 35.0% | |
| ! | CTCTAGCTCCTTAAAGATAT+TGG | + | chr4_1:54244447-54244466 | None:intergenic | 35.0% |
| !! | AATGAAGCTAAGGTTGATAG+TGG | - | chr4_1:54244682-54244701 | Msa0556170:intron | 35.0% |
| ! | CAAGGCATCTCAAAAGTTTA+TGG | + | chr4_1:54244709-54244728 | None:intergenic | 35.0% |
| !!! | TAAACTTTTGAGATGCCTTG+AGG | - | chr4_1:54244709-54244728 | Msa0556170:intron | 35.0% |
| !! | TTTTCTTTTCTGGTACTGCA+TGG | - | chr4_1:54244759-54244778 | Msa0556170:intron | 35.0% |
| GAAGATCATCTGAGTAACAA+GGG | + | chr4_1:54244827-54244846 | None:intergenic | 35.0% | |
| TGAAGATCATCTGAGTAACA+AGG | + | chr4_1:54244828-54244847 | None:intergenic | 35.0% | |
| ! | AGGCAGAAGCATAATTTGAT+GGG | + | chr4_1:54244877-54244896 | None:intergenic | 35.0% |
| GGATTAATCGAAGCTTAATG+AGG | + | chr4_1:54245044-54245063 | None:intergenic | 35.0% | |
| TTGAAATTTGGAGATAGGGT+TGG | + | chr4_1:54245189-54245208 | None:intergenic | 35.0% | |
| !! | TCATGAAAGAGGTGTTTAAG+AGG | - | chr4_1:54245246-54245265 | Msa0556170:intron | 35.0% |
| !! | CATGAAAGAGGTGTTTAAGA+GGG | - | chr4_1:54245247-54245266 | Msa0556170:intron | 35.0% |
| ! | TGCCTTTTCTATATTCCTGA+TGG | - | chr4_1:54245353-54245372 | Msa0556170:intron | 35.0% |
| GTCCATCAGGAATATAGAAA+AGG | + | chr4_1:54245358-54245377 | None:intergenic | 35.0% | |
| ! | ATGGCTTGGAAACTTCTTAA+AGG | - | chr4_1:54245534-54245553 | Msa0556170:intron | 35.0% |
| ACTCTATGTTCATTATGCAC+AGG | - | chr4_1:54245903-54245922 | Msa0556170:intron | 35.0% | |
| ! | ATCGTCATTGGCATTGAAAA+TGG | + | chr4_1:54245997-54246016 | None:intergenic | 35.0% |
| ACCACACCTTATTGAAGTAA+GGG | + | chr4_1:54246078-54246097 | None:intergenic | 35.0% | |
| AACCACACCTTATTGAAGTA+AGG | + | chr4_1:54246079-54246098 | None:intergenic | 35.0% | |
| !!! | TCTTTAGTTTTTGCCTCCAT+AGG | - | chr4_1:54246101-54246120 | Msa0556170:intron | 35.0% |
| TTATGATCTTACCAATCCAC+TGG | + | chr4_1:54246166-54246185 | None:intergenic | 35.0% | |
| ! | AGATACATCCGTTCATTTTG+AGG | + | chr4_1:54246405-54246424 | None:intergenic | 35.0% |
| TTGTAACATTCTTCCCATGA+GGG | - | chr4_1:54246506-54246525 | Msa0556170:intron | 35.0% | |
| ! | TCTGTTGCAAAGCTTTTGGA+TGG | + | chr4_1:54241450-54241469 | None:intergenic | 40.0% |
| ! | GGTTTCTGTTGCAAAGCTTT+TGG | + | chr4_1:54241454-54241473 | None:intergenic | 40.0% |
| ! | CGTTGTTGAATTTGAAACGG+AGG | + | chr4_1:54241483-54241502 | None:intergenic | 40.0% |
| ACAACACAAGTAACAATGGC+GGG | - | chr4_1:54241575-54241594 | Msa0556170:three_prime_UTR | 40.0% | |
| ! | TTTTGCTGCTGGTACCAATT+TGG | - | chr4_1:54241703-54241722 | Msa0556170:CDS | 40.0% |
| ! | TGGTACCAATTTGGCTTCAA+GGG | - | chr4_1:54241712-54241731 | Msa0556170:CDS | 40.0% |
| !!! | AGGGGTTTTTTTATGATGGG+TGG | - | chr4_1:54241944-54241963 | Msa0556170:CDS | 40.0% |
| ! | ACACTTTTGATCAGAAGGGT+AGG | - | chr4_1:54242022-54242041 | Msa0556170:CDS | 40.0% |
| TCACATATGTCATGTCGTGT+CGG | + | chr4_1:54242111-54242130 | None:intergenic | 40.0% | |
| TCAAATTGCAGCAGCTATAG+TGG | + | chr4_1:54242368-54242387 | None:intergenic | 40.0% | |
| ! | TGTGATTGCTTGCTAGGAAA+GGG | - | chr4_1:54242536-54242555 | Msa0556170:CDS | 40.0% |
| AGATATAGGTTATGGGGTCA+TGG | - | chr4_1:54242602-54242621 | Msa0556170:intron | 40.0% | |
| GATATAGGTTATGGGGTCAT+GGG | - | chr4_1:54242603-54242622 | Msa0556170:intron | 40.0% | |
| ! | TTGGTAATTCCCCCATTGAT+CGG | - | chr4_1:54242754-54242773 | Msa0556170:intron | 40.0% |
| AGTCTGTAAACCGATCAATG+GGG | + | chr4_1:54242767-54242786 | None:intergenic | 40.0% | |
| AACGGAGGGAGTAGTAAAAT+TGG | + | chr4_1:54243002-54243021 | None:intergenic | 40.0% | |
| !!! | GACACTCATTTTGAAACGGA+GGG | + | chr4_1:54243016-54243035 | None:intergenic | 40.0% |
| AGCCAATTGCACACAGATTA+AGG | + | chr4_1:54243245-54243264 | None:intergenic | 40.0% | |
| CAGAGAATAGAGGTTTAGGT+TGG | + | chr4_1:54243623-54243642 | None:intergenic | 40.0% | |
| AAAGAGGCAAATAGTGCATC+AGG | + | chr4_1:54243689-54243708 | None:intergenic | 40.0% | |
| ! | GATGCACTATTTGCCTCTTT+TGG | - | chr4_1:54243689-54243708 | Msa0556170:intron | 40.0% |
| !! | AGATCTTCTATTTCTGCACG+CGG | + | chr4_1:54243717-54243736 | None:intergenic | 40.0% |
| TGTGAAGCAAATCATACGTG+AGG | - | chr4_1:54243812-54243831 | Msa0556170:intron | 40.0% | |
| TAGGTAAGCGTAGAGAAAAG+TGG | + | chr4_1:54244133-54244152 | None:intergenic | 40.0% | |
| ! | CGATTTTCCGTAAAAGCTCT+CGG | - | chr4_1:54244274-54244293 | Msa0556170:CDS | 40.0% |
| ! | CATTCTTCCGAGAGCTTTTA+CGG | + | chr4_1:54244284-54244303 | None:intergenic | 40.0% |
| GTGGTGTAGTAATGAAGCTA+AGG | - | chr4_1:54244672-54244691 | Msa0556170:intron | 40.0% | |
| ATGCCTTGAGGCTCAATAAA+TGG | - | chr4_1:54244721-54244740 | Msa0556170:intron | 40.0% | |
| GATAAATGATGTTGAGCCAG+AGG | + | chr4_1:54244795-54244814 | None:intergenic | 40.0% | |
| ! | CAGGCAGAAGCATAATTTGA+TGG | + | chr4_1:54244878-54244897 | None:intergenic | 40.0% |
| GGGAAAGATGCAAGACAAAT+GGG | + | chr4_1:54245065-54245084 | None:intergenic | 40.0% | |
| AGTTTCCTTGTCAAGTGAAG+GGG | + | chr4_1:54245086-54245105 | None:intergenic | 40.0% | |
| GAGTTTCCTTGTCAAGTGAA+GGG | + | chr4_1:54245087-54245106 | None:intergenic | 40.0% | |
| CTTCACTTGACAAGGAAACT+CGG | - | chr4_1:54245086-54245105 | Msa0556170:intron | 40.0% | |
| TTCACTTGACAAGGAAACTC+GGG | - | chr4_1:54245087-54245106 | Msa0556170:intron | 40.0% | |
| ! | GAAACTCGGGATACAGTTTT+AGG | - | chr4_1:54245100-54245119 | Msa0556170:intron | 40.0% |
| ATCTCTTCCGAGTTATATGC+AGG | - | chr4_1:54245132-54245151 | Msa0556170:intron | 40.0% | |
| TCTCTTCCGAGTTATATGCA+GGG | - | chr4_1:54245133-54245152 | Msa0556170:intron | 40.0% | |
| AAGCATCCCTGCATATAACT+CGG | + | chr4_1:54245142-54245161 | None:intergenic | 40.0% | |
| TCAACAGAAAAGAGTCCATC+AGG | + | chr4_1:54245371-54245390 | None:intergenic | 40.0% | |
| !! | TGGACTCTTTTCTGTTGACT+TGG | - | chr4_1:54245373-54245392 | Msa0556170:intron | 40.0% |
| !! | CCATTCGCTCTGAAACATAA+TGG | + | chr4_1:54245518-54245537 | None:intergenic | 40.0% |
| CCATTATGTTTCAGAGCGAA+TGG | - | chr4_1:54245515-54245534 | Msa0556170:intron | 40.0% | |
| ACCAAGCAAGTTCAACTTCT+TGG | - | chr4_1:54246041-54246060 | Msa0556170:intron | 40.0% | |
| ! | TCCAAGAAGTTGAACTTGCT+TGG | + | chr4_1:54246045-54246064 | None:intergenic | 40.0% |
| AGTTCAACTTCTTGGACAGA+AGG | - | chr4_1:54246049-54246068 | Msa0556170:intron | 40.0% | |
| AGGTTGCCCTTACTTCAATA+AGG | - | chr4_1:54246069-54246088 | Msa0556170:intron | 40.0% | |
| GCGCAAAATGCTACAATGAT+TGG | + | chr4_1:54246321-54246340 | None:intergenic | 40.0% | |
| ! | TGCCACTTGAAATGCTTTGT+CGG | + | chr4_1:54246343-54246362 | None:intergenic | 40.0% |
| CAACCCTTTCAGCTAAAAAG+AGG | + | chr4_1:54246489-54246508 | None:intergenic | 40.0% | |
| GTTGTAACATTCTTCCCATG+AGG | - | chr4_1:54246505-54246524 | Msa0556170:intron | 40.0% | |
| AGTAACAAAGTCACCCTCAT+GGG | + | chr4_1:54246522-54246541 | None:intergenic | 40.0% | |
| CACAGTAACAGCTTAGAAAG+TGG | + | chr4_1:54246560-54246579 | None:intergenic | 40.0% | |
| AGCAGAAGAGGAAGCAGAAA+AGG | + | chr4_1:54241663-54241682 | None:intergenic | 45.0% | |
| ! | CTGGTACCAATTTGGCTTCA+AGG | - | chr4_1:54241711-54241730 | Msa0556170:CDS | 45.0% |
| GAAAGCCCTTGAAGCCAAAT+TGG | + | chr4_1:54241720-54241739 | None:intergenic | 45.0% | |
| TGGCTTCAAGGGCTTTCTTT+CGG | - | chr4_1:54241723-54241742 | Msa0556170:CDS | 45.0% | |
| AATTGGGTATGGCTGTGATG+TGG | - | chr4_1:54241900-54241919 | Msa0556170:CDS | 45.0% | |
| ATTGGGTATGGCTGTGATGT+GGG | - | chr4_1:54241901-54241920 | Msa0556170:CDS | 45.0% | |
| GCACTGCTAATCACATGTGT+CGG | - | chr4_1:54241984-54242003 | Msa0556170:CDS | 45.0% | |
| ! | CGGACACACTTTTGATCACA+AGG | + | chr4_1:54242069-54242088 | None:intergenic | 45.0% |
| GTATGGGACACAACAAGTGT+CGG | + | chr4_1:54242089-54242108 | None:intergenic | 45.0% | |
| ! | ATGTCATGTCGTGTCGGTAT+GGG | + | chr4_1:54242105-54242124 | None:intergenic | 45.0% |
| ! | TATGTCATGTCGTGTCGGTA+TGG | + | chr4_1:54242106-54242125 | None:intergenic | 45.0% |
| CTTGTCAATCGCAGATTGCA+CGG | - | chr4_1:54242230-54242249 | Msa0556170:CDS | 45.0% | |
| TTGTCAATCGCAGATTGCAC+GGG | - | chr4_1:54242231-54242250 | Msa0556170:CDS | 45.0% | |
| ACAATCCTGCTAGATGCTAG+TGG | - | chr4_1:54242387-54242406 | Msa0556170:intron | 45.0% | |
| CAATCCTGCTAGATGCTAGT+GGG | - | chr4_1:54242388-54242407 | Msa0556170:intron | 45.0% | |
| CTTTCCTAGCAAGCAATCAC+AGG | + | chr4_1:54242537-54242556 | None:intergenic | 45.0% | |
| ! | CTGTGATTGCTTGCTAGGAA+AGG | - | chr4_1:54242535-54242554 | Msa0556170:CDS | 45.0% |
| ! | GTGATTGCTTGCTAGGAAAG+GGG | - | chr4_1:54242537-54242556 | Msa0556170:CDS | 45.0% |
| ! | TGATTGCTTGCTAGGAAAGG+GGG | - | chr4_1:54242538-54242557 | Msa0556170:CDS | 45.0% |
| GTCTGTAAACCGATCAATGG+GGG | + | chr4_1:54242766-54242785 | None:intergenic | 45.0% | |
| !!! | CGACACTCATTTTGAAACGG+AGG | + | chr4_1:54243017-54243036 | None:intergenic | 45.0% |
| ! | CGACACTCATTTGAAACGGA+GGG | - | chr4_1:54243269-54243288 | Msa0556170:intron | 45.0% |
| CCAGCATCACAATATGCAAC+TGG | + | chr4_1:54243501-54243520 | None:intergenic | 45.0% | |
| CCAGTTGCATATTGTGATGC+TGG | - | chr4_1:54243498-54243517 | Msa0556170:intron | 45.0% | |
| AGGGAACAACCAGATCAACA+CGG | + | chr4_1:54243782-54243801 | None:intergenic | 45.0% | |
| TGGTTCAGCTTCTCCTTAAG+AGG | + | chr4_1:54244252-54244271 | None:intergenic | 45.0% | |
| AGGCCATTTATTGAGCCTCA+AGG | + | chr4_1:54244727-54244746 | None:intergenic | 45.0% | |
| !! | AATTTGATGGGCTGATGACG+AGG | + | chr4_1:54244865-54244884 | None:intergenic | 45.0% |
| GGGGAAAGATGCAAGACAAA+TGG | + | chr4_1:54245066-54245085 | None:intergenic | 45.0% | |
| GTTTCCTTGTCAAGTGAAGG+GGG | + | chr4_1:54245085-54245104 | None:intergenic | 45.0% | |
| CGAGTTTCCTTGTCAAGTGA+AGG | + | chr4_1:54245088-54245107 | None:intergenic | 45.0% | |
| ATGTTTCAGAGCGAATGGCT+TGG | - | chr4_1:54245520-54245539 | Msa0556170:intron | 45.0% | |
| TTATGCACAGGACACATGCT+AGG | - | chr4_1:54245915-54245934 | Msa0556170:intron | 45.0% | |
| ! | GCATCATGGGTTGTTCAAGT+AGG | - | chr4_1:54245945-54245964 | Msa0556170:intron | 45.0% |
| ! | ATGGGTTGTTCAAGTAGGCA+TGG | - | chr4_1:54245950-54245969 | Msa0556170:intron | 45.0% |
| ACTGTCTTCGTCATCGTCAT+TGG | + | chr4_1:54246009-54246028 | None:intergenic | 45.0% | |
| GCCCTTACTTCAATAAGGTG+TGG | - | chr4_1:54246074-54246093 | Msa0556170:intron | 45.0% | |
| ! | TTTTTGCCTCCATAGGAGCA+GGG | - | chr4_1:54246108-54246127 | Msa0556170:intron | 45.0% |
| !! | TTCTTTTCAGGATGTGCTGC+TGG | - | chr4_1:54246282-54246301 | Msa0556170:intron | 45.0% |
| CAGTAACAAAGTCACCCTCA+TGG | + | chr4_1:54246523-54246542 | None:intergenic | 45.0% | |
| CGACACTAACATGTCGCCAT+TGG | + | chr4_1:54242173-54242192 | None:intergenic | 50.0% | |
| ATCGCAGATTGCACGGGAAA+TGG | - | chr4_1:54242237-54242256 | Msa0556170:CDS | 50.0% | |
| GTATCCCACTAGCATCTAGC+AGG | + | chr4_1:54242395-54242414 | None:intergenic | 50.0% | |
| GTGACCTGTGATTGCTTGCT+AGG | - | chr4_1:54242530-54242549 | Msa0556170:CDS | 50.0% | |
| TTGCTAGGAAAGGGGGACAA+GGG | - | chr4_1:54242545-54242564 | Msa0556170:CDS | 50.0% | |
| ! | GCGACACTCATTTGAAACGG+AGG | - | chr4_1:54243268-54243287 | Msa0556170:intron | 50.0% |
| ACCAGATCAACACGGTGTTC+TGG | + | chr4_1:54243774-54243793 | None:intergenic | 50.0% | |
| GAGCTCTACAAACAGCTGAG+TGG | + | chr4_1:54244579-54244598 | None:intergenic | 50.0% | |
| GTTGAGCCAGAGGAGAAAAC+AGG | + | chr4_1:54244785-54244804 | None:intergenic | 50.0% | |
| ! | CAAAGAAGGTAGGGAAGTGC+AGG | + | chr4_1:54244897-54244916 | None:intergenic | 50.0% |
| CTTTCCCCCTTCACTTGACA+AGG | - | chr4_1:54245078-54245097 | Msa0556170:intron | 50.0% | |
| TCCTAGATCAGCTACTCGCA+AGG | - | chr4_1:54245747-54245766 | Msa0556170:intron | 50.0% | |
| GTGGGCAGAACAACATTCAG+AGG | - | chr4_1:54245808-54245827 | Msa0556170:intron | 50.0% | |
| TGCTAGGAGTTGCAGCATCA+TGG | - | chr4_1:54245931-54245950 | Msa0556170:intron | 50.0% | |
| GCTAGGAGTTGCAGCATCAT+GGG | - | chr4_1:54245932-54245951 | Msa0556170:intron | 50.0% | |
| ! | GTTTTTGCCTCCATAGGAGC+AGG | - | chr4_1:54246107-54246126 | Msa0556170:intron | 50.0% |
| ACCCTTGTTCGTCCATCACT+TGG | - | chr4_1:54246140-54246159 | Msa0556170:intron | 50.0% | |
| !! | GCCAAGTGATGGACGAACAA+GGG | + | chr4_1:54246144-54246163 | None:intergenic | 50.0% |
| ! | AGGATGTGCTGCTGGTGATT+TGG | - | chr4_1:54246290-54246309 | Msa0556170:intron | 50.0% |
| !! | TGTGCTGCTGGTGATTTGGT+TGG | - | chr4_1:54246294-54246313 | Msa0556170:CDS | 50.0% |
| ! | CGCCGACAAAGCATTTCAAG+TGG | - | chr4_1:54246338-54246357 | Msa0556170:CDS | 50.0% |
| TGCAGCTACAGCAGCAGAAG+AGG | + | chr4_1:54241675-54241694 | None:intergenic | 55.0% | |
| ! | GCAGCTGCTTCTTTTGCTGC+TGG | - | chr4_1:54241692-54241711 | Msa0556170:CDS | 55.0% |
| CTTGCTAGGAAAGGGGGACA+AGG | - | chr4_1:54242544-54242563 | Msa0556170:CDS | 55.0% | |
| AGGTTATGGGGTCATGGGAG+TGG | - | chr4_1:54242608-54242627 | Msa0556170:intron | 55.0% | |
| TATGGGGTCATGGGAGTGGT+AGG | - | chr4_1:54242612-54242631 | Msa0556170:intron | 55.0% | |
| ATGGGGTCATGGGAGTGGTA+GGG | - | chr4_1:54242613-54242632 | Msa0556170:intron | 55.0% | |
| GGGAGTGGTAGGGTTTAGCT+AGG | - | chr4_1:54242623-54242642 | Msa0556170:intron | 55.0% | |
| ! | GCCAGAACACCGTGTTGATC+TGG | - | chr4_1:54243770-54243789 | Msa0556170:intron | 55.0% |
| ! | GCATGGCCTGTTTTCTCCTC+TGG | - | chr4_1:54244776-54244795 | Msa0556170:intron | 55.0% |
| GCCTTGCGAGTAGCTGATCT+AGG | + | chr4_1:54245751-54245770 | None:intergenic | 55.0% | |
| !! | GGCCAAGTGATGGACGAACA+AGG | + | chr4_1:54246145-54246164 | None:intergenic | 55.0% |
| TTCGTCCATCACTTGGCCAG+TGG | - | chr4_1:54246147-54246166 | Msa0556170:intron | 55.0% | |
| CCAATCCACTGGCCAAGTGA+TGG | + | chr4_1:54246155-54246174 | None:intergenic | 55.0% | |
| CCATCACTTGGCCAGTGGAT+TGG | - | chr4_1:54246152-54246171 | Msa0556170:intron | 55.0% | |
| CACAAGGATCGGCGCTACAG+TGG | + | chr4_1:54242053-54242072 | None:intergenic | 60.0% | |
| TCTGCACGCGGCTCCAAAAG+AGG | + | chr4_1:54243705-54243724 | None:intergenic | 60.0% | |
| CAGCTACTCGCAAGGCTGCA+AGG | - | chr4_1:54245755-54245774 | Msa0556170:intron | 60.0% | |
| GCCTCCATAGGAGCAGGGAT+CGG | - | chr4_1:54246113-54246132 | Msa0556170:intron | 60.0% | |
| ACCGATCCCTGCTCCTATGG+AGG | + | chr4_1:54246117-54246136 | None:intergenic | 60.0% | |
| !! | AGCACCGATCCCTGCTCCTA+TGG | + | chr4_1:54246120-54246139 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 54241427 | 54246608 | 54241427 | ID=Msa0556170;Name=Msa0556170 |
| chr4_1 | mRNA | 54241427 | 54246608 | 54241427 | ID=Msa0556170-mRNA-1;Parent=Msa0556170;Name=Msa0556170-mRNA-1;_AED=0.08;_eAED=0.08;_QI=143|1|1|1|0.83|0.71|7|240|330 |
| chr4_1 | exon | 54241427 | 54241743 | 54241427 | ID=Msa0556170-mRNA-1:exon:15947;Parent=Msa0556170-mRNA-1 |
| chr4_1 | exon | 54241862 | 54242110 | 54241862 | ID=Msa0556170-mRNA-1:exon:15946;Parent=Msa0556170-mRNA-1 |
| chr4_1 | exon | 54242206 | 54242292 | 54242206 | ID=Msa0556170-mRNA-1:exon:15945;Parent=Msa0556170-mRNA-1 |
| chr4_1 | exon | 54242480 | 54242564 | 54242480 | ID=Msa0556170-mRNA-1:exon:15944;Parent=Msa0556170-mRNA-1 |
| chr4_1 | exon | 54244202 | 54244541 | 54244202 | ID=Msa0556170-mRNA-1:exon:15943;Parent=Msa0556170-mRNA-1 |
| chr4_1 | exon | 54246291 | 54246500 | 54246291 | ID=Msa0556170-mRNA-1:exon:15942;Parent=Msa0556170-mRNA-1 |
| chr4_1 | exon | 54246521 | 54246608 | 54246521 | ID=Msa0556170-mRNA-1:exon:15941;Parent=Msa0556170-mRNA-1 |
| chr4_1 | five_prime_UTR | 54246521 | 54246608 | 54246521 | ID=Msa0556170-mRNA-1:five_prime_utr;Parent=Msa0556170-mRNA-1 |
| chr4_1 | five_prime_UTR | 54246446 | 54246500 | 54246446 | ID=Msa0556170-mRNA-1:five_prime_utr;Parent=Msa0556170-mRNA-1 |
| chr4_1 | CDS | 54246291 | 54246445 | 54246291 | ID=Msa0556170-mRNA-1:cds;Parent=Msa0556170-mRNA-1 |
| chr4_1 | CDS | 54244202 | 54244541 | 54244202 | ID=Msa0556170-mRNA-1:cds;Parent=Msa0556170-mRNA-1 |
| chr4_1 | CDS | 54242480 | 54242564 | 54242480 | ID=Msa0556170-mRNA-1:cds;Parent=Msa0556170-mRNA-1 |
| chr4_1 | CDS | 54242206 | 54242292 | 54242206 | ID=Msa0556170-mRNA-1:cds;Parent=Msa0556170-mRNA-1 |
| chr4_1 | CDS | 54241862 | 54242110 | 54241862 | ID=Msa0556170-mRNA-1:cds;Parent=Msa0556170-mRNA-1 |
| chr4_1 | CDS | 54241667 | 54241743 | 54241667 | ID=Msa0556170-mRNA-1:cds;Parent=Msa0556170-mRNA-1 |
| chr4_1 | three_prime_UTR | 54241427 | 54241666 | 54241427 | ID=Msa0556170-mRNA-1:three_prime_utr;Parent=Msa0556170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
