Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1431480 | XP_003626280.1 | 92.972 | 498 | 27 | 3 | 1 | 494 | 1 | 494 | 0.0 | 866 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1431480 | sp|Q9FZ33|AXR4_ARATH | 52.846 | 492 | 205 | 10 | 1 | 489 | 1 | 468 | 7.14e-159 | 462 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1431480 | G7KYN0 | 92.972 | 498 | 27 | 3 | 1 | 494 | 1 | 494 | 0.0 | 866 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000560 | Msa1431480 | 0.849383 | 3.350171e-60 | -8.615850e-47 |
| Msa0003080 | Msa1431480 | 0.832157 | 1.109792e-55 | -8.615850e-47 |
| Msa0014770 | Msa1431480 | 0.800687 | 1.282127e-48 | -8.615850e-47 |
| Msa0025160 | Msa1431480 | 0.843952 | 1.021031e-58 | -8.615850e-47 |
| Msa0025580 | Msa1431480 | 0.810284 | 1.244575e-50 | -8.615850e-47 |
| Msa0034210 | Msa1431480 | 0.806302 | 8.787911e-50 | -8.615850e-47 |
| Msa0035340 | Msa1431480 | 0.810419 | 1.163608e-50 | -8.615850e-47 |
| Msa0035380 | Msa1431480 | 0.802212 | 6.244869e-49 | -8.615850e-47 |
| Msa0050660 | Msa1431480 | 0.864975 | 8.258365e-65 | -8.615850e-47 |
| Msa0050700 | Msa1431480 | 0.865771 | 4.635476e-65 | -8.615850e-47 |
| Msa0050790 | Msa1431480 | 0.861353 | 1.089291e-63 | -8.615850e-47 |
| Msa0072520 | Msa1431480 | 0.819907 | 9.074154e-53 | -8.615850e-47 |
| Msa0078500 | Msa1431480 | 0.806016 | 1.009348e-49 | -8.615850e-47 |
| Msa0087450 | Msa1431480 | 0.811871 | 5.636276e-51 | -8.615850e-47 |
| Msa0090400 | Msa1431480 | 0.829205 | 5.863487e-55 | -8.615850e-47 |
| Msa0094790 | Msa1431480 | 0.805707 | 1.172433e-49 | -8.615850e-47 |
| Msa1382300 | Msa1431480 | 0.801025 | 1.093978e-48 | -8.615850e-47 |
| Msa1393780 | Msa1431480 | 0.866287 | 3.183211e-65 | -8.615850e-47 |
| Msa1409410 | Msa1431480 | 0.805632 | 1.215359e-49 | -8.615850e-47 |
| Msa1410160 | Msa1431480 | 0.814222 | 1.719373e-51 | -8.615850e-47 |
| Msa1411790 | Msa1431480 | 0.978942 | 6.823301e-147 | -8.615850e-47 |
| Msa1413620 | Msa1431480 | 0.809396 | 1.931554e-50 | -8.615850e-47 |
| Msa1415540 | Msa1431480 | 0.821019 | 5.044536e-53 | -8.615850e-47 |
| Msa1431480 | Msa1440630 | 0.861704 | 8.507062e-64 | -8.615850e-47 |
| Msa1431480 | Msa1441570 | 0.827400 | 1.597403e-54 | -8.615850e-47 |
| Msa1431480 | Msa1452140 | 0.803632 | 3.177940e-49 | -8.615850e-47 |
| Msa0644410 | Msa1431480 | 0.835696 | 1.444036e-56 | -8.615850e-47 |
| Msa0652650 | Msa1431480 | 0.834534 | 2.835492e-56 | -8.615850e-47 |
| Msa0675330 | Msa1431480 | 0.826560 | 2.536805e-54 | -8.615850e-47 |
| Msa0684220 | Msa1431480 | 0.824433 | 8.091694e-54 | -8.615850e-47 |
| Msa0687090 | Msa1431480 | 0.821003 | 5.087696e-53 | -8.615850e-47 |
| Msa0694200 | Msa1431480 | 0.805008 | 1.642077e-49 | -8.615850e-47 |
| Msa0700460 | Msa1431480 | 0.807337 | 5.309526e-50 | -8.615850e-47 |
| Msa0706150 | Msa1431480 | 0.801395 | 9.188570e-49 | -8.615850e-47 |
| Msa0720410 | Msa1431480 | 0.813062 | 3.095071e-51 | -8.615850e-47 |
| Msa0756490 | Msa1431480 | 0.841262 | 5.287860e-58 | -8.615850e-47 |
| Msa0778550 | Msa1431480 | 0.805929 | 1.053068e-49 | -8.615850e-47 |
| Msa0835490 | Msa1431480 | 0.819685 | 1.019826e-52 | -8.615850e-47 |
| Msa0841590 | Msa1431480 | 0.804374 | 2.227222e-49 | -8.615850e-47 |
| Msa0126210 | Msa1431480 | 0.822617 | 2.152791e-53 | -8.615850e-47 |
| Msa0128310 | Msa1431480 | 0.801835 | 7.466248e-49 | -8.615850e-47 |
| Msa0137880 | Msa1431480 | 0.849326 | 3.474193e-60 | -8.615850e-47 |
| Msa0140280 | Msa1431480 | 0.822392 | 2.428268e-53 | -8.615850e-47 |
| Msa0146650 | Msa1431480 | 0.843379 | 1.452964e-58 | -8.615850e-47 |
| Msa0161930 | Msa1431480 | 0.821447 | 4.018220e-53 | -8.615850e-47 |
| Msa0174440 | Msa1431480 | 0.801303 | 9.595635e-49 | -8.615850e-47 |
| Msa0176060 | Msa1431480 | 0.821431 | 4.053623e-53 | -8.615850e-47 |
| Msa0213610 | Msa1431480 | 0.804513 | 2.084264e-49 | -8.615850e-47 |
| Msa0230800 | Msa1431480 | 0.809417 | 1.911582e-50 | -8.615850e-47 |
| Msa0230870 | Msa1431480 | 0.806462 | 8.131350e-50 | -8.615850e-47 |
| Msa1231700 | Msa1431480 | 0.810769 | 9.775595e-51 | -8.615850e-47 |
| Msa1240770 | Msa1431480 | 0.807270 | 5.485699e-50 | -8.615850e-47 |
| Msa1262590 | Msa1431480 | 0.833781 | 4.377209e-56 | -8.615850e-47 |
| Msa1282260 | Msa1431480 | 0.807733 | 4.376761e-50 | -8.615850e-47 |
| Msa1315130 | Msa1431480 | 0.821119 | 4.782045e-53 | -8.615850e-47 |
| Msa1315160 | Msa1431480 | 0.840661 | 7.601494e-58 | -8.615850e-47 |
| Msa1321340 | Msa1431480 | 0.821913 | 3.135760e-53 | -8.615850e-47 |
| Msa0367520 | Msa1431480 | 0.820372 | 7.102097e-53 | -8.615850e-47 |
| Msa0380670 | Msa1431480 | 0.831477 | 1.633205e-55 | -8.615850e-47 |
| Msa0382390 | Msa1431480 | 0.811948 | 5.422987e-51 | -8.615850e-47 |
| Msa0426530 | Msa1431480 | 0.843186 | 1.635526e-58 | -8.615850e-47 |
| Msa0430300 | Msa1431480 | 0.846741 | 1.795376e-59 | -8.615850e-47 |
| Msa0432140 | Msa1431480 | 0.810961 | 8.882640e-51 | -8.615850e-47 |
| Msa0440430 | Msa1431480 | 0.817542 | 3.123631e-52 | -8.615850e-47 |
| Msa0472950 | Msa1431480 | 0.842117 | 3.145045e-58 | -8.615850e-47 |
| Msa0479320 | Msa1431480 | 0.804727 | 1.879720e-49 | -8.615850e-47 |
| Msa1021590 | Msa1431480 | 0.840570 | 8.031927e-58 | -8.615850e-47 |
| Msa1034600 | Msa1431480 | 0.826082 | 3.297952e-54 | -8.615850e-47 |
| Msa1039220 | Msa1431480 | 0.929989 | 3.140799e-93 | -8.615850e-47 |
| Msa1042160 | Msa1431480 | 0.864588 | 1.091852e-64 | -8.615850e-47 |
| Msa1042190 | Msa1431480 | 0.863622 | 2.182134e-64 | -8.615850e-47 |
| Msa1044680 | Msa1431480 | 0.843949 | 1.022581e-58 | -8.615850e-47 |
| Msa1074370 | Msa1431480 | 0.821884 | 3.184942e-53 | -8.615850e-47 |
| Msa1074600 | Msa1431480 | 0.803970 | 2.702867e-49 | -8.615850e-47 |
| Msa1080000 | Msa1431480 | 0.826150 | 3.177081e-54 | -8.615850e-47 |
| Msa1081690 | Msa1431480 | 0.827727 | 1.333668e-54 | -8.615850e-47 |
| Msa1096960 | Msa1431480 | 0.807219 | 5.625649e-50 | -8.615850e-47 |
| Msa1104110 | Msa1431480 | 0.807525 | 4.844860e-50 | -8.615850e-47 |
| Msa1105640 | Msa1431480 | 0.850258 | 1.907804e-60 | -8.615850e-47 |
| Msa0267110 | Msa1431480 | 0.826378 | 2.804220e-54 | -8.615850e-47 |
| Msa0284800 | Msa1431480 | 0.815694 | 8.109185e-52 | -8.615850e-47 |
| Msa0293040 | Msa1431480 | 0.804696 | 1.908337e-49 | -8.615850e-47 |
| Msa0330520 | Msa1431480 | 0.835384 | 1.731624e-56 | -8.615850e-47 |
| Msa1123210 | Msa1431480 | 0.842414 | 2.623634e-58 | -8.615850e-47 |
| Msa1130280 | Msa1431480 | 0.845871 | 3.097983e-59 | -8.615850e-47 |
| Msa1148960 | Msa1431480 | 0.817492 | 3.207261e-52 | -8.615850e-47 |
| Msa1160910 | Msa1431480 | 0.810104 | 1.360541e-50 | -8.615850e-47 |
| Msa1161970 | Msa1431480 | 0.802526 | 5.380709e-49 | -8.615850e-47 |
| Msa1166190 | Msa1431480 | 0.816963 | 4.217056e-52 | -8.615850e-47 |
| Msa1166290 | Msa1431480 | 0.802741 | 4.857795e-49 | -8.615850e-47 |
| Msa1167470 | Msa1431480 | 0.864372 | 1.275451e-64 | -8.615850e-47 |
| Msa1192560 | Msa1431480 | 0.805300 | 1.426802e-49 | -8.615850e-47 |
| Msa1192590 | Msa1431480 | 0.806909 | 6.541080e-50 | -8.615850e-47 |
| Msa1216110 | Msa1431480 | 0.841332 | 5.067098e-58 | -8.615850e-47 |
| Msa1217050 | Msa1431480 | 0.815964 | 7.056495e-52 | -8.615850e-47 |
| Msa1217210 | Msa1431480 | 0.813292 | 2.755840e-51 | -8.615850e-47 |
| Msa0484570 | Msa1431480 | 0.808030 | 3.782743e-50 | -8.615850e-47 |
| Msa0517250 | Msa1431480 | 0.867508 | 1.300035e-65 | -8.615850e-47 |
| Msa0520990 | Msa1431480 | 0.822855 | 1.895123e-53 | -8.615850e-47 |
| Msa0528570 | Msa1431480 | 0.823719 | 1.190596e-53 | -8.615850e-47 |
| Msa0532050 | Msa1431480 | 0.804112 | 2.526109e-49 | -8.615850e-47 |
| Msa0541300 | Msa1431480 | 0.826840 | 2.175456e-54 | -8.615850e-47 |
| Msa0541310 | Msa1431480 | 0.821507 | 3.891600e-53 | -8.615850e-47 |
| Msa0548470 | Msa1431480 | 0.819260 | 1.275205e-52 | -8.615850e-47 |
| Msa0550050 | Msa1431480 | 0.809397 | 1.930819e-50 | -8.615850e-47 |
| Msa0556170 | Msa1431480 | 0.809379 | 1.948397e-50 | -8.615850e-47 |
| Msa0585020 | Msa1431480 | 0.821566 | 3.770977e-53 | -8.615850e-47 |
| Msa0597270 | Msa1431480 | 0.834514 | 2.868920e-56 | -8.615850e-47 |
| Msa0895000 | Msa1431480 | 0.807476 | 4.962537e-50 | -8.615850e-47 |
| Msa0945260 | Msa1431480 | 0.820434 | 6.873687e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1431480 | MtrunA17_Chr7g0272801 | 92.972 | 498 | 27 | 3 | 1 | 494 | 1 | 494 | 0.0 | 866 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1431480 | AT1G54990.1 | 52.846 | 492 | 205 | 10 | 1 | 489 | 1 | 468 | 7.26e-160 | 462 |
Find 153 sgRNAs with CRISPR-Local
Find 247 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAACAAACCCATTATCTTTC+TGG | 0.188044 | tig0026841:-14622 | Msa1431480:CDS |
| GCAAAGTTTGTTACTCATTC+TGG | 0.188700 | tig0026841:-13564 | Msa1431480:CDS |
| GAGGGGTTGGATGGGATCTT+TGG | 0.196734 | tig0026841:-14233 | Msa1431480:CDS |
| GTTGTTGGTTGGGGTGAATT+TGG | 0.200935 | tig0026841:+14453 | None:intergenic |
| GGTTTCTGAGAATTTAAATT+TGG | 0.212168 | tig0026841:-13961 | Msa1431480:CDS |
| GTGAATAAACCTATTGATTT+AGG | 0.213075 | tig0026841:-14089 | Msa1431480:CDS |
| TGAAGAGATTGGAAAAGTTT+TGG | 0.215909 | tig0026841:-14063 | Msa1431480:CDS |
| AGGTGGATGGGTTGTTGGTT+GGG | 0.231660 | tig0026841:+14443 | None:intergenic |
| CTTTAGGGTTTACTGCAAAT+TGG | 0.234894 | tig0026841:-13983 | Msa1431480:CDS |
| TGTTGTTGGCCTTTGGGTTT+TGG | 0.239927 | tig0026841:+14661 | None:intergenic |
| TGTTATTGCCATCGACCTTC+CGG | 0.265741 | tig0026841:-14294 | Msa1431480:CDS |
| AGGGGTTGGATGGGATCTTT+GGG | 0.268507 | tig0026841:-14232 | Msa1431480:CDS |
| CATCCATGAAGCTGGTTATA+TGG | 0.272529 | tig0026841:-12064 | Msa1431480:CDS |
| TTTGATCAAATTGTTGAAAC+TGG | 0.289054 | tig0026841:-14158 | Msa1431480:CDS |
| GCCCGTGCCACCTTCAAATT+CGG | 0.300130 | tig0026841:-13913 | Msa1431480:CDS |
| GTTGTGTTGTTGTTGGCCTT+TGG | 0.306265 | tig0026841:+14654 | None:intergenic |
| TGTTGTTGTTGTTGATGATC+TGG | 0.318059 | tig0026841:+14740 | None:intergenic |
| TTGTGTTTGGATTTAGGAAT+AGG | 0.320057 | tig0026841:-11817 | Msa1431480:three_prime_UTR |
| AGGATTAGCTCCTGTTCATT+TGG | 0.321069 | tig0026841:-14021 | Msa1431480:CDS |
| GGGTTGCTGGTGCTCTTCCT+TGG | 0.322738 | tig0026841:-13587 | Msa1431480:CDS |
| AAATATCTTAATTATTTAGA+TGG | 0.323157 | tig0026841:-11759 | Msa1431480:three_prime_UTR |
| GGAGAGGTTATTGCTACATT+AGG | 0.331260 | tig0026841:-14041 | Msa1431480:CDS |
| AAGTAGAACCAGAAAGATAA+TGG | 0.337907 | tig0026841:+14614 | None:intergenic |
| GAAACTGTTCTCATTCTTCA+TGG | 0.338779 | tig0026841:-14380 | Msa1431480:CDS |
| GGTGGATGGGTTGTTGGTTG+GGG | 0.340133 | tig0026841:+14444 | None:intergenic |
| TTCTGTATGTGGTCTGGGAT+AGG | 0.340544 | tig0026841:+12159 | None:intergenic |
| AAGAAGTGAAGAGGAAGAAA+AGG | 0.344078 | tig0026841:+14567 | None:intergenic |
| TTGTGTTGTTGTTGGCCTTT+GGG | 0.345222 | tig0026841:+14655 | None:intergenic |
| GGAACATCCAAAACCCAAAT+AGG | 0.346484 | tig0026841:+13882 | None:intergenic |
| GTTATTGCCATCGACCTTCC+GGG | 0.348441 | tig0026841:-14293 | Msa1431480:CDS |
| TCTGTATGTGGTCTGGGATA+GGG | 0.353068 | tig0026841:+12160 | None:intergenic |
| CATCCATATAACCAGCTTCA+TGG | 0.356193 | tig0026841:+12061 | None:intergenic |
| AACATCTTCTGTATGTGGTC+TGG | 0.357775 | tig0026841:+12153 | None:intergenic |
| CATAGGGTGCTGTTGAAGTC+TGG | 0.362685 | tig0026841:-13762 | Msa1431480:CDS |
| TCTTCAGGACCTAAATCAAT+AGG | 0.364136 | tig0026841:+14080 | None:intergenic |
| GGTTGCTGGTGCTCTTCCTT+GGG | 0.365766 | tig0026841:-13586 | Msa1431480:CDS |
| GATCACTTTCACCAATCATT+TGG | 0.367733 | tig0026841:+12018 | None:intergenic |
| AAGTGATCACTGAATATTAC+TGG | 0.373728 | tig0026841:-12003 | Msa1431480:three_prime_UTR |
| TAGCTTTGATTTAGCTGAAT+GGG | 0.376044 | tig0026841:-13694 | Msa1431480:CDS |
| TACTCATTCTGGAGGCCGTT+GGG | 0.379063 | tig0026841:-13553 | Msa1431480:CDS |
| TTATCTGAAAATCCGCTTCC+CGG | 0.379993 | tig0026841:+14275 | None:intergenic |
| TTTAGGGTTTACTGCAAATT+GGG | 0.387005 | tig0026841:-13982 | Msa1431480:CDS |
| TGAAGAGGTGGATGGGTTGT+TGG | 0.390818 | tig0026841:+14438 | None:intergenic |
| GAGGTGGATGGGTTGTTGGT+TGG | 0.397941 | tig0026841:+14442 | None:intergenic |
| AGGAAAGCGGTTGTGGCTAT+TGG | 0.398736 | tig0026841:-13732 | Msa1431480:CDS |
| CTGTATGTGGTCTGGGATAG+GGG | 0.404408 | tig0026841:+12161 | None:intergenic |
| GAGAACAGTTTCTGTAGGAT+TGG | 0.410614 | tig0026841:+14391 | None:intergenic |
| GGTTGGATGGGATCTTTGGG+AGG | 0.414023 | tig0026841:-14229 | Msa1431480:CDS |
| TTCTAAGAGAATTGGTGGTT+TGG | 0.414206 | tig0026841:-13796 | Msa1431480:CDS |
| CCCGTGCCACCTTCAAATTC+GGG | 0.415386 | tig0026841:-13912 | Msa1431480:CDS |
| AATGGAGCCGCGAAGGGAAT+CGG | 0.417456 | tig0026841:-13608 | Msa1431480:CDS |
| TGGGAATGGTGGGGTCCAGC+TGG | 0.419291 | tig0026841:+14411 | None:intergenic |
| TGAGGTGGTTGTGTTGTTGT+TGG | 0.425120 | tig0026841:+14647 | None:intergenic |
| TATAGTGAGATTCAAGAAAA+GGG | 0.425324 | tig0026841:-14194 | Msa1431480:CDS |
| TTATAGTGAGATTCAAGAAA+AGG | 0.427517 | tig0026841:-14195 | Msa1431480:CDS |
| ACATCTTCTGTATGTGGTCT+GGG | 0.430738 | tig0026841:+12154 | None:intergenic |
| GATTTAGGTCCTGAAGAGAT+TGG | 0.432271 | tig0026841:-14074 | Msa1431480:CDS |
| AACTGGACAAATTCCTTATG+AGG | 0.434249 | tig0026841:-14141 | Msa1431480:CDS |
| AGAACAGTTTCTGTAGGATT+GGG | 0.436036 | tig0026841:+14392 | None:intergenic |
| CAGCAACCCGATTCCCTTCG+CGG | 0.436325 | tig0026841:+13601 | None:intergenic |
| TACTGTTCTAAGAGAATTGG+TGG | 0.443206 | tig0026841:-13801 | Msa1431480:CDS |
| GTTTCAGTTGAGGGGTTGGA+TGG | 0.444135 | tig0026841:-14242 | Msa1431480:CDS |
| GACTTTGATTGTGCGGCCAT+TGG | 0.445718 | tig0026841:+14475 | None:intergenic |
| TCTGTAGGATTGGGAATGGT+GGG | 0.446740 | tig0026841:+14401 | None:intergenic |
| TTCTGTAGGATTGGGAATGG+TGG | 0.450396 | tig0026841:+14400 | None:intergenic |
| TCAGTAGAAGTTTCAGTTGA+GGG | 0.452271 | tig0026841:-14251 | Msa1431480:CDS |
| AATGGGTTTGTTTGTTGAGG+TGG | 0.455092 | tig0026841:+14632 | None:intergenic |
| AGAAGTTTCAGTTGAGGGGT+TGG | 0.455575 | tig0026841:-14246 | Msa1431480:CDS |
| TTACTCATTCTGGAGGCCGT+TGG | 0.460405 | tig0026841:-13554 | Msa1431480:CDS |
| CTAGCTAGAACTTCCTCATA+AGG | 0.463412 | tig0026841:+14128 | None:intergenic |
| TCATGCAAAACCAAATGAAC+AGG | 0.463756 | tig0026841:+14011 | None:intergenic |
| GCTGGTTATATGGATGCATA+TGG | 0.467345 | tig0026841:-12054 | Msa1431480:CDS |
| ATAGGGTGCTGTTGAAGTCT+GGG | 0.467959 | tig0026841:-13761 | Msa1431480:CDS |
| ATGGAGCCGCGAAGGGAATC+GGG | 0.469235 | tig0026841:-13607 | Msa1431480:CDS |
| CTAGCTTTGATTTAGCTGAA+TGG | 0.469276 | tig0026841:-13695 | Msa1431480:CDS |
| GCTGAATGGGGTGGTTCTGA+TGG | 0.473143 | tig0026841:-13681 | Msa1431480:CDS |
| GGATGGAAGGAAAGCGGTTG+TGG | 0.475697 | tig0026841:-13739 | Msa1431480:CDS |
| ATATGCCAATGCAACTGATC+TGG | 0.483350 | tig0026841:-13650 | Msa1431480:CDS |
| AGAAGTGAAGAGGAAGAAAA+GGG | 0.485080 | tig0026841:+14568 | None:intergenic |
| GCCATCGACCTTCCGGGAAG+CGG | 0.485321 | tig0026841:-14287 | Msa1431480:CDS |
| GATAATGGGTTTGTTTGTTG+AGG | 0.488583 | tig0026841:+14629 | None:intergenic |
| CCACCTCTTCACCTTCCAGC+TGG | 0.496092 | tig0026841:-14426 | Msa1431480:CDS |
| AGTAGAACCAGAAAGATAAT+GGG | 0.498545 | tig0026841:+14615 | None:intergenic |
| CCCGAATTTGAAGGTGGCAC+GGG | 0.505835 | tig0026841:+13912 | None:intergenic |
| CTGAAAATCCGCTTCCCGGA+AGG | 0.507613 | tig0026841:+14279 | None:intergenic |
| CATCAAACATCTTCTGTATG+TGG | 0.517131 | tig0026841:+12148 | None:intergenic |
| CCCTGTGCATAATTGTTACA+AGG | 0.517495 | tig0026841:+11870 | None:intergenic |
| GGAAAAGCACCCGAATTTGA+AGG | 0.517603 | tig0026841:+13903 | None:intergenic |
| GATCAAAGAATTAGAAAGAA+GGG | 0.518896 | tig0026841:+14894 | None:intergenic |
| TGTATGTGGTCTGGGATAGG+GGG | 0.520587 | tig0026841:+12162 | None:intergenic |
| GATGCATATGGGCTTGGTCA+TGG | 0.526973 | tig0026841:-12042 | Msa1431480:CDS |
| AATGGTGGGGTCCAGCTGGA+AGG | 0.527781 | tig0026841:+14415 | None:intergenic |
| AACTGATCTGGTCTAGTGAT+TGG | 0.528070 | tig0026841:-13638 | Msa1431480:CDS |
| CTAGTGATTGGTCTGTAGAA+TGG | 0.528994 | tig0026841:-13626 | Msa1431480:CDS |
| TTGGTCATGGACCAAATGAT+TGG | 0.531729 | tig0026841:-12029 | Msa1431480:CDS |
| TTTGGATGCTGATGCACATA+GGG | 0.533671 | tig0026841:-13778 | Msa1431480:CDS |
| ACCTTGTAACAATTATGCAC+AGG | 0.534279 | tig0026841:-11871 | Msa1431480:three_prime_UTR |
| TTTCAGTTGAGGGGTTGGAT+GGG | 0.534699 | tig0026841:-14241 | Msa1431480:CDS |
| AAAGAGATGAAGAAGTGAAG+AGG | 0.535653 | tig0026841:+14558 | None:intergenic |
| TATATGGATGCATATGGGCT+TGG | 0.541175 | tig0026841:-12048 | Msa1431480:CDS |
| GGATCAAAGAATTAGAAAGA+AGG | 0.541760 | tig0026841:+14893 | None:intergenic |
| TCCGCTTCCCGGAAGGTCGA+TGG | 0.542399 | tig0026841:+14286 | None:intergenic |
| GGCCATTGGAGTAGTGTTGA+CGG | 0.544197 | tig0026841:+14489 | None:intergenic |
| AGCTTTGATTTAGCTGAATG+GGG | 0.545831 | tig0026841:-13693 | Msa1431480:CDS |
| CTTCTTCCTCACCACAACAA+TGG | 0.546383 | tig0026841:-14535 | Msa1431480:CDS |
| GATGAAGCTAAAAGTGATGA+TGG | 0.551240 | tig0026841:-12129 | Msa1431480:CDS |
| TAGTGTTGACGGAGAGTGGT+GGG | 0.551242 | tig0026841:+14500 | None:intergenic |
| TTAATCACACTCTCATCTCA+TGG | 0.552844 | tig0026841:-14786 | Msa1431480:exon |
| CTAGACCAGATCAGTTGCAT+TGG | 0.554156 | tig0026841:+13645 | None:intergenic |
| GTTTGGATGCTGATGCACAT+AGG | 0.560246 | tig0026841:-13779 | Msa1431480:CDS |
| CTGGAAGGTGAAGAGGTGGA+TGG | 0.563184 | tig0026841:+14430 | None:intergenic |
| CTGTAGAATGGAGCCGCGAA+GGG | 0.564253 | tig0026841:-13614 | Msa1431480:CDS |
| GAAGCTCACATCCATGAAGC+TGG | 0.565704 | tig0026841:-12072 | Msa1431480:CDS |
| GGTCCAGCTGGAAGGTGAAG+AGG | 0.567156 | tig0026841:+14423 | None:intergenic |
| AGTTTCTGTAGGATTGGGAA+TGG | 0.569909 | tig0026841:+14397 | None:intergenic |
| ACCCGAATTTGAAGGTGGCA+CGG | 0.569982 | tig0026841:+13911 | None:intergenic |
| ATCAGTAGAAGTTTCAGTTG+AGG | 0.570619 | tig0026841:-14252 | Msa1431480:CDS |
| CAGTAGAAGTTTCAGTTGAG+GGG | 0.576596 | tig0026841:-14250 | Msa1431480:CDS |
| GACAGCATCACTGCATAGCA+TGG | 0.577718 | tig0026841:+14917 | None:intergenic |
| AAAACTACCTCTCTAATCAA+AGG | 0.579564 | tig0026841:+13861 | None:intergenic |
| GGATGTTCCTTTGATTAGAG+AGG | 0.589634 | tig0026841:-13868 | Msa1431480:CDS |
| CTCCGTCAACACTACTCCAA+TGG | 0.591347 | tig0026841:-14491 | Msa1431480:CDS |
| GTGCTGTTGAAGTCTGGGGA+TGG | 0.594356 | tig0026841:-13756 | Msa1431480:CDS |
| AGTGATGATGGTCATGATCA+TGG | 0.595237 | tig0026841:-12117 | Msa1431480:CDS |
| TTTGATTTAGCTGAATGGGG+TGG | 0.595613 | tig0026841:-13690 | Msa1431480:CDS |
| CTGGTTATATGGATGCATAT+GGG | 0.596389 | tig0026841:-12053 | Msa1431480:CDS |
| AGAATGAGAACAGTTTCTGT+AGG | 0.599638 | tig0026841:+14386 | None:intergenic |
| AAGTTTGTTACTCATTCTGG+AGG | 0.604446 | tig0026841:-13561 | Msa1431480:CDS |
| ATCAAAGAATTAGAAAGAAG+GGG | 0.605039 | tig0026841:+14895 | None:intergenic |
| TGGAAGGTGAAGAGGTGGAT+GGG | 0.608088 | tig0026841:+14431 | None:intergenic |
| TTCTAGCTAGAATGTCAAAG+AGG | 0.614198 | tig0026841:-14115 | Msa1431480:CDS |
| CCAGCTGGAAGGTGAAGAGG+TGG | 0.614774 | tig0026841:+14426 | None:intergenic |
| CCTTGTAACAATTATGCACA+GGG | 0.617284 | tig0026841:-11870 | Msa1431480:three_prime_UTR |
| TGTTGAAGTCTGGGGATGGA+AGG | 0.618688 | tig0026841:-13752 | Msa1431480:CDS |
| CTGTAGGATTGGGAATGGTG+GGG | 0.619120 | tig0026841:+14402 | None:intergenic |
| GAATTTGGACTTTGATTGTG+CGG | 0.619782 | tig0026841:+14468 | None:intergenic |
| GGTCACGGACATGATCGCCT+TGG | 0.628231 | tig0026841:-12096 | Msa1431480:CDS |
| GTCTGGGGATGGAAGGAAAG+CGG | 0.630612 | tig0026841:-13745 | Msa1431480:CDS |
| TGAGTAACAAACTTTGCCCA+AGG | 0.635006 | tig0026841:+13570 | None:intergenic |
| TTGTGCACACCTGAGCCCAA+CGG | 0.637219 | tig0026841:+13538 | None:intergenic |
| AAACCAAATCCAAAACCCAA+AGG | 0.638219 | tig0026841:-14670 | Msa1431480:CDS |
| GGAGTAGTGTTGACGGAGAG+TGG | 0.642866 | tig0026841:+14496 | None:intergenic |
| GTAGTGTTGACGGAGAGTGG+TGG | 0.662724 | tig0026841:+14499 | None:intergenic |
| TAAAATAACATACAACACGT+CGG | 0.676180 | tig0026841:+11942 | None:intergenic |
| GGAGAGTGGTGGGTAAAGTG+AGG | 0.677652 | tig0026841:+14510 | None:intergenic |
| ATTCAATCTCTTAGCACACA+AGG | 0.684118 | tig0026841:-14323 | Msa1431480:CDS |
| AAAGCACCCGAATTTGAAGG+TGG | 0.688232 | tig0026841:+13906 | None:intergenic |
| CGATAAGAATATGAACTGAG+AGG | 0.689494 | tig0026841:+14353 | None:intergenic |
| GAGGAACCATTGTTGTGGTG+AGG | 0.690028 | tig0026841:+14529 | None:intergenic |
| TAGGGTGCTGTTGAAGTCTG+GGG | 0.693836 | tig0026841:-13760 | Msa1431480:CDS |
| CATGGATGTGAGCTTCACCA+AGG | 0.699492 | tig0026841:+12079 | None:intergenic |
| GATGGTCATGATCATGGTCA+CGG | 0.699879 | tig0026841:-12111 | Msa1431480:CDS |
| AAAGTGAGGAACCATTGTTG+TGG | 0.772546 | tig0026841:+14524 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATCTTAATTATTTAGA+TGG | - | tig0026841:14819-14838 | Msa1431480:five_prime_UTR | 10.0% |
| !!! | AAATTTTAGTAAAAAAGCTA+GGG | + | tig0026841:11716-11735 | None:intergenic | 15.0% |
| !!! | GAAATTTTAGTAAAAAAGCT+AGG | + | tig0026841:11717-11736 | None:intergenic | 20.0% |
| !! | AACAAATGTGTTTCTTTAAT+GGG | + | tig0026841:13464-13483 | None:intergenic | 20.0% |
| !!! | AAAGTTTTAGCAATAGAAAA+GGG | + | tig0026841:13592-13611 | None:intergenic | 20.0% |
| !!! | ATTAGTTTTCTCTTATACTT+TGG | - | tig0026841:13719-13738 | Msa1431480:CDS | 20.0% |
| !!! | TTAGTTTTCTCTTATACTTT+GGG | - | tig0026841:13720-13739 | Msa1431480:CDS | 20.0% |
| !! | AATATTAGATACAGAATGAA+AGG | - | tig0026841:13965-13984 | Msa1431480:CDS | 20.0% |
| !! | TTATCAATGAATCAACTAAT+GGG | + | tig0026841:14019-14038 | None:intergenic | 20.0% |
| !! | TTTATCAATGAATCAACTAA+TGG | + | tig0026841:14020-14039 | None:intergenic | 20.0% |
| !! | TTGATTCATTGATAAATTCA+AGG | - | tig0026841:14024-14043 | Msa1431480:CDS | 20.0% |
| !! | ATGTTCAAATATGATATTTG+AGG | - | tig0026841:14084-14103 | Msa1431480:CDS | 20.0% |
| !!! | ATTTTTTTTCATATCCCATT+CGG | - | tig0026841:14202-14221 | Msa1431480:CDS | 20.0% |
| !! | ATATACACAAATAAACGATT+CGG | + | tig0026841:14251-14270 | None:intergenic | 20.0% |
| !!! | ACTTTTTTCAAAATCTTTGA+AGG | - | tig0026841:14667-14686 | Msa1431480:CDS | 20.0% |
| !!! | CTTTTTTCAAAATCTTTGAA+GGG | - | tig0026841:14668-14687 | Msa1431480:CDS | 20.0% |
| !!! | ATTTAGGAATAGGTTTTTTA+CGG | - | tig0026841:14771-14790 | Msa1431480:exon | 20.0% |
| ! | ATCAAAGAATTAGAAAGAAG+GGG | + | tig0026841:11686-11705 | None:intergenic | 25.0% |
| ! | GATCAAAGAATTAGAAAGAA+GGG | + | tig0026841:11687-11706 | None:intergenic | 25.0% |
| ! | TTATAGTGAGATTCAAGAAA+AGG | - | tig0026841:12383-12402 | Msa1431480:intron | 25.0% |
| ! | TATAGTGAGATTCAAGAAAA+GGG | - | tig0026841:12384-12403 | Msa1431480:intron | 25.0% |
| !!! | TTCAAGAAAAGGGTTTTTTT+TGG | - | tig0026841:12394-12413 | Msa1431480:intron | 25.0% |
| !!! | TCAAGAAAAGGGTTTTTTTT+GGG | - | tig0026841:12395-12414 | Msa1431480:intron | 25.0% |
| ! | TTTGATCAAATTGTTGAAAC+TGG | - | tig0026841:12420-12439 | Msa1431480:intron | 25.0% |
| !!! | GTGAATAAACCTATTGATTT+AGG | - | tig0026841:12489-12508 | Msa1431480:intron | 25.0% |
| !! | GGTTTCTGAGAATTTAAATT+TGG | - | tig0026841:12617-12636 | Msa1431480:intron | 25.0% |
| !!! | TTTTACTGTTCTAAGAGAAT+TGG | - | tig0026841:12774-12793 | Msa1431480:intron | 25.0% |
| ! | GTTGTGTAGAATTGTTTAAT+TGG | - | tig0026841:13117-13136 | Msa1431480:intron | 25.0% |
| ! | AATTGGATTGAAATGAATAC+TGG | - | tig0026841:13134-13153 | Msa1431480:intron | 25.0% |
| ! | AAGTCAACATTGATATTTGA+TGG | + | tig0026841:13424-13443 | None:intergenic | 25.0% |
| ! | CAACAAATGTGTTTCTTTAA+TGG | + | tig0026841:13465-13484 | None:intergenic | 25.0% |
| !! | TTTGCACAATTAGTTTATGT+AGG | - | tig0026841:13500-13519 | Msa1431480:intron | 25.0% |
| !!! | CAAAGTTTTAGCAATAGAAA+AGG | + | tig0026841:13593-13612 | None:intergenic | 25.0% |
| !! | GTTTTCATGGAATTTGTAAA+TGG | - | tig0026841:13745-13764 | Msa1431480:CDS | 25.0% |
| ! | TAGGAAAGTCTTTATAGAAT+TGG | - | tig0026841:13820-13839 | Msa1431480:CDS | 25.0% |
| !! | TTGATTTTTACTTTCAACCT+TGG | - | tig0026841:13861-13880 | Msa1431480:CDS | 25.0% |
| ! | ATGGGATATGAAAAAAAATC+AGG | + | tig0026841:14201-14220 | None:intergenic | 25.0% |
| ! | TAAAATAACATACAACACGT+CGG | + | tig0026841:14639-14658 | None:intergenic | 25.0% |
| !!! | TTTAGGAATAGGTTTTTTAC+GGG | - | tig0026841:14772-14791 | Msa1431480:exon | 25.0% |
| GGATCAAAGAATTAGAAAGA+AGG | + | tig0026841:11688-11707 | None:intergenic | 30.0% | |
| !! | GAAAAACTTGCTAATCTCAA+AGG | - | tig0026841:11767-11786 | Msa1431480:three_prime_UTR | 30.0% |
| !! | GTTTTGTTGGAATGTTGTTT+AGG | + | tig0026841:11892-11911 | None:intergenic | 30.0% |
| AAACAAACCCATTATCTTTC+TGG | - | tig0026841:11956-11975 | Msa1431480:three_prime_UTR | 30.0% | |
| AGTAGAACCAGAAAGATAAT+GGG | + | tig0026841:11966-11985 | None:intergenic | 30.0% | |
| AAGTAGAACCAGAAAGATAA+TGG | + | tig0026841:11967-11986 | None:intergenic | 30.0% | |
| ! | AAAACTTTTCCAATCTCTTC+AGG | + | tig0026841:12516-12535 | None:intergenic | 30.0% |
| ! | TGAAGAGATTGGAAAAGTTT+TGG | - | tig0026841:12515-12534 | Msa1431480:intron | 30.0% |
| ! | GAAGAGATTGGAAAAGTTTT+GGG | - | tig0026841:12516-12535 | Msa1431480:intron | 30.0% |
| ! | TTTTGCATGATTCAGCTTTA+GGG | - | tig0026841:12580-12599 | Msa1431480:intron | 30.0% |
| ! | TTTAGGGTTTACTGCAAATT+GGG | - | tig0026841:12596-12615 | Msa1431480:intron | 30.0% |
| AAAACTACCTCTCTAATCAA+AGG | + | tig0026841:12720-12739 | None:intergenic | 30.0% | |
| ! | TTGATTAGAGAGGTAGTTTT+AGG | - | tig0026841:12720-12739 | Msa1431480:intron | 30.0% |
| !! | TGATTAGAGAGGTAGTTTTA+GGG | - | tig0026841:12721-12740 | Msa1431480:intron | 30.0% |
| !! | TCCTTATGTTTTTGCAAAAG+TGG | - | tig0026841:12746-12765 | Msa1431480:intron | 30.0% |
| !! | ACCACTTTTGCAAAAACATA+AGG | + | tig0026841:12750-12769 | None:intergenic | 30.0% |
| !! | TAGCTTTGATTTAGCTGAAT+GGG | - | tig0026841:12884-12903 | Msa1431480:intron | 30.0% |
| CTCTATAAATAATGCATGAC+AGG | + | tig0026841:13288-13307 | None:intergenic | 30.0% | |
| TCGAAATCTCTCATAATTCA+TGG | - | tig0026841:13318-13337 | Msa1431480:intron | 30.0% | |
| CTTACATTACCAAGTAGAAA+AGG | - | tig0026841:13370-13389 | Msa1431480:intron | 30.0% | |
| ! | AACATTGATATTTGATGGCA+CGG | + | tig0026841:13419-13438 | None:intergenic | 30.0% |
| ! | TGTTTCTTTAATGGGTGTAT+AGG | + | tig0026841:13456-13475 | None:intergenic | 30.0% |
| !!! | TCACTAGACTAGTTTTAAGT+TGG | + | tig0026841:13561-13580 | None:intergenic | 30.0% |
| ! | ACTTAAAACTAGTCTAGTGA+AGG | - | tig0026841:13561-13580 | Msa1431480:CDS | 30.0% |
| !!! | TATACTTTGGGATGTTTTCA+TGG | - | tig0026841:13732-13751 | Msa1431480:CDS | 30.0% |
| GTATGTTACAACAAAGAACT+AGG | - | tig0026841:13801-13820 | Msa1431480:CDS | 30.0% | |
| AATTCAAGGAGTAATGATCT+TGG | - | tig0026841:14038-14057 | Msa1431480:CDS | 30.0% | |
| GGATATGAAAAAAAATCAGG+AGG | + | tig0026841:14198-14217 | None:intergenic | 30.0% | |
| !!! | TTTTCTGTTTGCTGTTTCTT+AGG | - | tig0026841:14310-14329 | Msa1431480:CDS | 30.0% |
| ! | TCAACTTTTCTGACAGTTTT+TGG | + | tig0026841:14389-14408 | None:intergenic | 30.0% |
| AAGTGATCACTGAATATTAC+TGG | - | tig0026841:14575-14594 | Msa1431480:CDS | 30.0% | |
| !! | ACAAAAACCAGTTTTTCAGT+TGG | + | tig0026841:14745-14764 | None:intergenic | 30.0% |
| !!! | GAAAAACTGGTTTTTGTGTT+TGG | - | tig0026841:14748-14767 | Msa1431480:CDS | 30.0% |
| ! | TGGTTTTTGTGTTTGGATTT+AGG | - | tig0026841:14755-14774 | Msa1431480:CDS | 30.0% |
| TTGTGTTTGGATTTAGGAAT+AGG | - | tig0026841:14761-14780 | Msa1431480:CDS | 30.0% | |
| !!! | TTAGGAATAGGTTTTTTACG+GGG | - | tig0026841:14773-14792 | Msa1431480:exon | 30.0% |
| AGTAAAAAAGCTAGGGAATC+TGG | + | tig0026841:11709-11728 | None:intergenic | 35.0% | |
| TTAATCACACTCTCATCTCA+TGG | - | tig0026841:11792-11811 | Msa1431480:three_prime_UTR | 35.0% | |
| !! | TGTTGTTGTTGTTGATGATC+TGG | + | tig0026841:11841-11860 | None:intergenic | 35.0% |
| !!! | GGTTTTGGATTTGGTTTTGT+TGG | + | tig0026841:11905-11924 | None:intergenic | 35.0% |
| AAACCAAATCCAAAACCCAA+AGG | - | tig0026841:11908-11927 | Msa1431480:three_prime_UTR | 35.0% | |
| !! | GATAATGGGTTTGTTTGTTG+AGG | + | tig0026841:11952-11971 | None:intergenic | 35.0% |
| AGAAGTGAAGAGGAAGAAAA+GGG | + | tig0026841:12013-12032 | None:intergenic | 35.0% | |
| AAGAAGTGAAGAGGAAGAAA+AGG | + | tig0026841:12014-12033 | None:intergenic | 35.0% | |
| AAAGAGATGAAGAAGTGAAG+AGG | + | tig0026841:12023-12042 | None:intergenic | 35.0% | |
| GAATTTGGACTTTGATTGTG+CGG | + | tig0026841:12113-12132 | None:intergenic | 35.0% | |
| AGAACAGTTTCTGTAGGATT+GGG | + | tig0026841:12189-12208 | None:intergenic | 35.0% | |
| AGAATGAGAACAGTTTCTGT+AGG | + | tig0026841:12195-12214 | None:intergenic | 35.0% | |
| GAAACTGTTCTCATTCTTCA+TGG | - | tig0026841:12198-12217 | Msa1431480:CDS | 35.0% | |
| CGATAAGAATATGAACTGAG+AGG | + | tig0026841:12228-12247 | None:intergenic | 35.0% | |
| ATTCAATCTCTTAGCACACA+AGG | - | tig0026841:12255-12274 | Msa1431480:intron | 35.0% | |
| ATCAGTAGAAGTTTCAGTTG+AGG | - | tig0026841:12326-12345 | Msa1431480:intron | 35.0% | |
| TCAGTAGAAGTTTCAGTTGA+GGG | - | tig0026841:12327-12346 | Msa1431480:intron | 35.0% | |
| AACTGGACAAATTCCTTATG+AGG | - | tig0026841:12437-12456 | Msa1431480:intron | 35.0% | |
| ! | TTCTAGCTAGAATGTCAAAG+AGG | - | tig0026841:12463-12482 | Msa1431480:intron | 35.0% |
| TCTTCAGGACCTAAATCAAT+AGG | + | tig0026841:12501-12520 | None:intergenic | 35.0% | |
| TCATGCAAAACCAAATGAAC+AGG | + | tig0026841:12570-12589 | None:intergenic | 35.0% | |
| ! | GTTTTGCATGATTCAGCTTT+AGG | - | tig0026841:12579-12598 | Msa1431480:intron | 35.0% |
| !! | CTTTAGGGTTTACTGCAAAT+TGG | - | tig0026841:12595-12614 | Msa1431480:intron | 35.0% |
| !! | TGCTTTTCCTATTTGGGTTT+TGG | - | tig0026841:12689-12708 | Msa1431480:intron | 35.0% |
| !! | TACTGTTCTAAGAGAATTGG+TGG | - | tig0026841:12777-12796 | Msa1431480:intron | 35.0% |
| ! | TTCTAAGAGAATTGGTGGTT+TGG | - | tig0026841:12782-12801 | Msa1431480:intron | 35.0% |
| !! | CTAGCTTTGATTTAGCTGAA+TGG | - | tig0026841:12883-12902 | Msa1431480:intron | 35.0% |
| ! | AGCTTTGATTTAGCTGAATG+GGG | - | tig0026841:12885-12904 | Msa1431480:intron | 35.0% |
| !! | GCAAAGTTTGTTACTCATTC+TGG | - | tig0026841:13014-13033 | Msa1431480:intron | 35.0% |
| !! | AAGTTTGTTACTCATTCTGG+AGG | - | tig0026841:13017-13036 | Msa1431480:intron | 35.0% |
| GTAATGCTCGAATTAAGAAC+AGG | + | tig0026841:13242-13261 | None:intergenic | 35.0% | |
| TTCTTAATTCGAGCATTACG+TGG | - | tig0026841:13243-13262 | Msa1431480:intron | 35.0% | |
| ! | CTATCAAAGCCTTTTCTACT+TGG | + | tig0026841:13382-13401 | None:intergenic | 35.0% |
| GGTTCATTCTGTCTCATATT+AGG | + | tig0026841:13531-13550 | None:intergenic | 35.0% | |
| !!! | TAGTTTTAAGTTGGAGCATG+AGG | + | tig0026841:13552-13571 | None:intergenic | 35.0% |
| ! | TAAAACTAGTCTAGTGAAGG+AGG | - | tig0026841:13564-13583 | Msa1431480:CDS | 35.0% |
| TATGCGTACATAAATGGAAG+AGG | + | tig0026841:13626-13645 | None:intergenic | 35.0% | |
| ACTAATGATGAGCTAATGTC+AGG | + | tig0026841:13705-13724 | None:intergenic | 35.0% | |
| AGTAATGATCTTGGTTCCTT+TGG | - | tig0026841:14047-14066 | Msa1431480:CDS | 35.0% | |
| GTAATGATCTTGGTTCCTTT+GGG | - | tig0026841:14048-14067 | Msa1431480:CDS | 35.0% | |
| TAATGATCTTGGTTCCTTTG+GGG | - | tig0026841:14049-14068 | Msa1431480:CDS | 35.0% | |
| CAAGGTTTCTTTGCTTTCAT+TGG | + | tig0026841:14169-14188 | None:intergenic | 35.0% | |
| CATCAAACATCTTCTGTATG+TGG | + | tig0026841:14433-14452 | None:intergenic | 35.0% | |
| GATGAAGCTAAAAGTGATGA+TGG | - | tig0026841:14449-14468 | Msa1431480:CDS | 35.0% | |
| CTGGTTATATGGATGCATAT+GGG | - | tig0026841:14525-14544 | Msa1431480:CDS | 35.0% | |
| GATCACTTTCACCAATCATT+TGG | + | tig0026841:14563-14582 | None:intergenic | 35.0% | |
| ACCTTGTAACAATTATGCAC+AGG | - | tig0026841:14707-14726 | Msa1431480:CDS | 35.0% | |
| CCTTGTAACAATTATGCACA+GGG | - | tig0026841:14708-14727 | Msa1431480:CDS | 35.0% | |
| !! | TTGTGTTGTTGTTGGCCTTT+GGG | + | tig0026841:11926-11945 | None:intergenic | 40.0% |
| ! | AATGGGTTTGTTTGTTGAGG+TGG | + | tig0026841:11949-11968 | None:intergenic | 40.0% |
| AAAGTGAGGAACCATTGTTG+TGG | + | tig0026841:12057-12076 | None:intergenic | 40.0% | |
| AGTTTCTGTAGGATTGGGAA+TGG | + | tig0026841:12184-12203 | None:intergenic | 40.0% | |
| GAGAACAGTTTCTGTAGGAT+TGG | + | tig0026841:12190-12209 | None:intergenic | 40.0% | |
| TTATCTGAAAATCCGCTTCC+CGG | + | tig0026841:12306-12325 | None:intergenic | 40.0% | |
| CAGTAGAAGTTTCAGTTGAG+GGG | - | tig0026841:12328-12347 | Msa1431480:intron | 40.0% | |
| CTAGCTAGAACTTCCTCATA+AGG | + | tig0026841:12453-12472 | None:intergenic | 40.0% | |
| GATTTAGGTCCTGAAGAGAT+TGG | - | tig0026841:12504-12523 | Msa1431480:intron | 40.0% | |
| !!! | GATTGGAAAAGTTTTGGGAG+AGG | - | tig0026841:12521-12540 | Msa1431480:intron | 40.0% |
| GGAGAGGTTATTGCTACATT+AGG | - | tig0026841:12537-12556 | Msa1431480:intron | 40.0% | |
| !! | AGGATTAGCTCCTGTTCATT+TGG | - | tig0026841:12557-12576 | Msa1431480:intron | 40.0% |
| ! | ATTCGGGTGCTTTTCCTATT+TGG | - | tig0026841:12682-12701 | Msa1431480:intron | 40.0% |
| ! | TTCGGGTGCTTTTCCTATTT+GGG | - | tig0026841:12683-12702 | Msa1431480:intron | 40.0% |
| GGAACATCCAAAACCCAAAT+AGG | + | tig0026841:12699-12718 | None:intergenic | 40.0% | |
| GGATGTTCCTTTGATTAGAG+AGG | - | tig0026841:12710-12729 | Msa1431480:intron | 40.0% | |
| TTTGGATGCTGATGCACATA+GGG | - | tig0026841:12800-12819 | Msa1431480:intron | 40.0% | |
| ! | TTTGATTTAGCTGAATGGGG+TGG | - | tig0026841:12888-12907 | Msa1431480:intron | 40.0% |
| ATATGCCAATGCAACTGATC+TGG | - | tig0026841:12928-12947 | Msa1431480:intron | 40.0% | |
| AACTGATCTGGTCTAGTGAT+TGG | - | tig0026841:12940-12959 | Msa1431480:intron | 40.0% | |
| !! | CTAGTGATTGGTCTGTAGAA+TGG | - | tig0026841:12952-12971 | Msa1431480:intron | 40.0% |
| TGAGTAACAAACTTTGCCCA+AGG | + | tig0026841:13011-13030 | None:intergenic | 40.0% | |
| ATAATGCATGACAGGCACTA+TGG | + | tig0026841:13280-13299 | None:intergenic | 40.0% | |
| CCAGCATATGCGTACATAAA+TGG | + | tig0026841:13632-13651 | None:intergenic | 40.0% | |
| CCATTTATGTACGCATATGC+TGG | - | tig0026841:13629-13648 | Msa1431480:CDS | 40.0% | |
| TCAACCTTGGTGAACTACAA+TGG | - | tig0026841:13874-13893 | Msa1431480:CDS | 40.0% | |
| AAGACCATTGTAGTTCACCA+AGG | + | tig0026841:13881-13900 | None:intergenic | 40.0% | |
| ! | ATAAACGATTCGGATCCATC+AGG | + | tig0026841:14241-14260 | None:intergenic | 40.0% |
| !! | TCTGTTTGCTGTTTCTTAGG+AGG | - | tig0026841:14313-14332 | Msa1431480:CDS | 40.0% |
| ACATCTTCTGTATGTGGTCT+GGG | + | tig0026841:14427-14446 | None:intergenic | 40.0% | |
| AACATCTTCTGTATGTGGTC+TGG | + | tig0026841:14428-14447 | None:intergenic | 40.0% | |
| !! | AGTGATGATGGTCATGATCA+TGG | - | tig0026841:14461-14480 | Msa1431480:CDS | 40.0% |
| CATCCATGAAGCTGGTTATA+TGG | - | tig0026841:14514-14533 | Msa1431480:CDS | 40.0% | |
| CATCCATATAACCAGCTTCA+TGG | + | tig0026841:14520-14539 | None:intergenic | 40.0% | |
| GCTGGTTATATGGATGCATA+TGG | - | tig0026841:14524-14543 | Msa1431480:CDS | 40.0% | |
| TATATGGATGCATATGGGCT+TGG | - | tig0026841:14530-14549 | Msa1431480:CDS | 40.0% | |
| TTGGTCATGGACCAAATGAT+TGG | - | tig0026841:14549-14568 | Msa1431480:CDS | 40.0% | |
| CCCTGTGCATAATTGTTACA+AGG | + | tig0026841:14711-14730 | None:intergenic | 40.0% | |
| !!! | TGGCCTTTGGGTTTTGGATT+TGG | + | tig0026841:11914-11933 | None:intergenic | 45.0% |
| !!! | TGTTGTTGGCCTTTGGGTTT+TGG | + | tig0026841:11920-11939 | None:intergenic | 45.0% |
| !! | GTTGTGTTGTTGTTGGCCTT+TGG | + | tig0026841:11927-11946 | None:intergenic | 45.0% |
| ! | TGAGGTGGTTGTGTTGTTGT+TGG | + | tig0026841:11934-11953 | None:intergenic | 45.0% |
| CTTCTTCCTCACCACAACAA+TGG | - | tig0026841:12043-12062 | Msa1431480:CDS | 45.0% | |
| ! | GTTGTTGGTTGGGGTGAATT+TGG | + | tig0026841:12128-12147 | None:intergenic | 45.0% |
| TCTGTAGGATTGGGAATGGT+GGG | + | tig0026841:12180-12199 | None:intergenic | 45.0% | |
| TTCTGTAGGATTGGGAATGG+TGG | + | tig0026841:12181-12200 | None:intergenic | 45.0% | |
| TGTTATTGCCATCGACCTTC+CGG | - | tig0026841:12284-12303 | Msa1431480:intron | 45.0% | |
| AGAAGTTTCAGTTGAGGGGT+TGG | - | tig0026841:12332-12351 | Msa1431480:intron | 45.0% | |
| TTTCAGTTGAGGGGTTGGAT+GGG | - | tig0026841:12337-12356 | Msa1431480:intron | 45.0% | |
| ! | AAAGCACCCGAATTTGAAGG+TGG | + | tig0026841:12675-12694 | None:intergenic | 45.0% |
| !! | GGAAAAGCACCCGAATTTGA+AGG | + | tig0026841:12678-12697 | None:intergenic | 45.0% |
| GTTTGGATGCTGATGCACAT+AGG | - | tig0026841:12799-12818 | Msa1431480:intron | 45.0% | |
| !! | ATAGGGTGCTGTTGAAGTCT+GGG | - | tig0026841:12817-12836 | Msa1431480:intron | 45.0% |
| CTAGACCAGATCAGTTGCAT+TGG | + | tig0026841:12936-12955 | None:intergenic | 45.0% | |
| !! | CATATGCTGGTTTGACGTTC+TGG | - | tig0026841:13642-13661 | Msa1431480:CDS | 45.0% |
| ATCTTCTCTTCTCTCCCCAA+AGG | + | tig0026841:14066-14085 | None:intergenic | 45.0% | |
| AAAATCAGGAGGCAAGAGCA+AGG | + | tig0026841:14187-14206 | None:intergenic | 45.0% | |
| ! | TCTGTATGTGGTCTGGGATA+GGG | + | tig0026841:14421-14440 | None:intergenic | 45.0% |
| ! | TTCTGTATGTGGTCTGGGAT+AGG | + | tig0026841:14422-14441 | None:intergenic | 45.0% |
| GATGGTCATGATCATGGTCA+CGG | - | tig0026841:14467-14486 | Msa1431480:CDS | 45.0% | |
| TCTTGCGCCAACTGAAAAAC+TGG | - | tig0026841:14735-14754 | Msa1431480:CDS | 45.0% | |
| GACAGCATCACTGCATAGCA+TGG | + | tig0026841:11664-11683 | None:intergenic | 50.0% | |
| GAGGAACCATTGTTGTGGTG+AGG | + | tig0026841:12052-12071 | None:intergenic | 50.0% | |
| !! | TAGTGTTGACGGAGAGTGGT+GGG | + | tig0026841:12081-12100 | None:intergenic | 50.0% |
| CTCCGTCAACACTACTCCAA+TGG | - | tig0026841:12087-12106 | Msa1431480:CDS | 50.0% | |
| ! | GGCCATTGGAGTAGTGTTGA+CGG | + | tig0026841:12092-12111 | None:intergenic | 50.0% |
| GACTTTGATTGTGCGGCCAT+TGG | + | tig0026841:12106-12125 | None:intergenic | 50.0% | |
| !! | AGGTGGATGGGTTGTTGGTT+GGG | + | tig0026841:12138-12157 | None:intergenic | 50.0% |
| !! | TGAAGAGGTGGATGGGTTGT+TGG | + | tig0026841:12143-12162 | None:intergenic | 50.0% |
| TGGAAGGTGAAGAGGTGGAT+GGG | + | tig0026841:12150-12169 | None:intergenic | 50.0% | |
| CTGTAGGATTGGGAATGGTG+GGG | + | tig0026841:12179-12198 | None:intergenic | 50.0% | |
| GTTATTGCCATCGACCTTCC+GGG | - | tig0026841:12285-12304 | Msa1431480:intron | 50.0% | |
| GTTTCAGTTGAGGGGTTGGA+TGG | - | tig0026841:12336-12355 | Msa1431480:intron | 50.0% | |
| AGGGGTTGGATGGGATCTTT+GGG | - | tig0026841:12346-12365 | Msa1431480:intron | 50.0% | |
| ACCCGAATTTGAAGGTGGCA+CGG | + | tig0026841:12670-12689 | None:intergenic | 50.0% | |
| !! | CATAGGGTGCTGTTGAAGTC+TGG | - | tig0026841:12816-12835 | Msa1431480:intron | 50.0% |
| !! | TAGGGTGCTGTTGAAGTCTG+GGG | - | tig0026841:12818-12837 | Msa1431480:intron | 50.0% |
| TGTTGAAGTCTGGGGATGGA+AGG | - | tig0026841:12826-12845 | Msa1431480:intron | 50.0% | |
| AGGAAAGCGGTTGTGGCTAT+TGG | - | tig0026841:12846-12865 | Msa1431480:intron | 50.0% | |
| ! | TTACTCATTCTGGAGGCCGT+TGG | - | tig0026841:13024-13043 | Msa1431480:intron | 50.0% |
| ! | TACTCATTCTGGAGGCCGTT+GGG | - | tig0026841:13025-13044 | Msa1431480:intron | 50.0% |
| GAGTAGGCGAATAGCCGAAT+GGG | + | tig0026841:14219-14238 | None:intergenic | 50.0% | |
| GATTCGGATCCATCAGGAGT+AGG | + | tig0026841:14235-14254 | None:intergenic | 50.0% | |
| ! | TGTATGTGGTCTGGGATAGG+GGG | + | tig0026841:14419-14438 | None:intergenic | 50.0% |
| ! | CTGTATGTGGTCTGGGATAG+GGG | + | tig0026841:14420-14439 | None:intergenic | 50.0% |
| CATGGATGTGAGCTTCACCA+AGG | + | tig0026841:14502-14521 | None:intergenic | 50.0% | |
| GAAGCTCACATCCATGAAGC+TGG | - | tig0026841:14506-14525 | Msa1431480:CDS | 50.0% | |
| ! | GATGCATATGGGCTTGGTCA+TGG | - | tig0026841:14536-14555 | Msa1431480:CDS | 50.0% |
| !! | GGAGAGTGGTGGGTAAAGTG+AGG | + | tig0026841:12071-12090 | None:intergenic | 55.0% |
| !! | GTAGTGTTGACGGAGAGTGG+TGG | + | tig0026841:12082-12101 | None:intergenic | 55.0% |
| !! | GGAGTAGTGTTGACGGAGAG+TGG | + | tig0026841:12085-12104 | None:intergenic | 55.0% |
| !! | GGTGGATGGGTTGTTGGTTG+GGG | + | tig0026841:12137-12156 | None:intergenic | 55.0% |
| !! | GAGGTGGATGGGTTGTTGGT+TGG | + | tig0026841:12139-12158 | None:intergenic | 55.0% |
| CTGGAAGGTGAAGAGGTGGA+TGG | + | tig0026841:12151-12170 | None:intergenic | 55.0% | |
| CTGAAAATCCGCTTCCCGGA+AGG | + | tig0026841:12302-12321 | None:intergenic | 55.0% | |
| GAGGGGTTGGATGGGATCTT+TGG | - | tig0026841:12345-12364 | Msa1431480:intron | 55.0% | |
| GGTTGGATGGGATCTTTGGG+AGG | - | tig0026841:12349-12368 | Msa1431480:intron | 55.0% | |
| GCCCGTGCCACCTTCAAATT+CGG | - | tig0026841:12665-12684 | Msa1431480:intron | 55.0% | |
| CCCGAATTTGAAGGTGGCAC+GGG | + | tig0026841:12669-12688 | None:intergenic | 55.0% | |
| CCCGTGCCACCTTCAAATTC+GGG | - | tig0026841:12666-12685 | Msa1431480:intron | 55.0% | |
| ! | GTGCTGTTGAAGTCTGGGGA+TGG | - | tig0026841:12822-12841 | Msa1431480:intron | 55.0% |
| GTCTGGGGATGGAAGGAAAG+CGG | - | tig0026841:12833-12852 | Msa1431480:intron | 55.0% | |
| GGATGGAAGGAAAGCGGTTG+TGG | - | tig0026841:12839-12858 | Msa1431480:intron | 55.0% | |
| !! | GCTGAATGGGGTGGTTCTGA+TGG | - | tig0026841:12897-12916 | Msa1431480:intron | 55.0% |
| TCTGTAGAATGGAGCCGCGA+AGG | - | tig0026841:12963-12982 | Msa1431480:intron | 55.0% | |
| CTGTAGAATGGAGCCGCGAA+GGG | - | tig0026841:12964-12983 | Msa1431480:intron | 55.0% | |
| AATGGAGCCGCGAAGGGAAT+CGG | - | tig0026841:12970-12989 | Msa1431480:intron | 55.0% | |
| GGTTGCTGGTGCTCTTCCTT+GGG | - | tig0026841:12992-13011 | Msa1431480:intron | 55.0% | |
| TTGTGCACACCTGAGCCCAA+CGG | + | tig0026841:13043-13062 | None:intergenic | 55.0% | |
| GGAGTAGGCGAATAGCCGAA+TGG | + | tig0026841:14220-14239 | None:intergenic | 55.0% | |
| GGCTATTCGCCTACTCCTGA+TGG | - | tig0026841:14223-14242 | Msa1431480:CDS | 55.0% | |
| CCAGCTGGAAGGTGAAGAGG+TGG | + | tig0026841:12155-12174 | None:intergenic | 60.0% | |
| CCACCTCTTCACCTTCCAGC+TGG | - | tig0026841:12152-12171 | Msa1431480:CDS | 60.0% | |
| GGTCCAGCTGGAAGGTGAAG+AGG | + | tig0026841:12158-12177 | None:intergenic | 60.0% | |
| ! | AATGGTGGGGTCCAGCTGGA+AGG | + | tig0026841:12166-12185 | None:intergenic | 60.0% |
| ATGGAGCCGCGAAGGGAATC+GGG | - | tig0026841:12971-12990 | Msa1431480:intron | 60.0% | |
| CAGCAACCCGATTCCCTTCG+CGG | + | tig0026841:12980-12999 | None:intergenic | 60.0% | |
| GGGTTGCTGGTGCTCTTCCT+TGG | - | tig0026841:12991-13010 | Msa1431480:intron | 60.0% | |
| GGTCACGGACATGATCGCCT+TGG | - | tig0026841:14482-14501 | Msa1431480:CDS | 60.0% | |
| ! | TGGGAATGGTGGGGTCCAGC+TGG | + | tig0026841:12170-12189 | None:intergenic | 65.0% |
| GCCATCGACCTTCCGGGAAG+CGG | - | tig0026841:12291-12310 | Msa1431480:intron | 65.0% | |
| TCCGCTTCCCGGAAGGTCGA+TGG | + | tig0026841:12295-12314 | None:intergenic | 65.0% | |
| ! | CGCGAAGGGAATCGGGTTGC+TGG | - | tig0026841:12978-12997 | Msa1431480:intron | 65.0% |
| ! | TTCTGGAGGCCGTTGGGCTC+AGG | - | tig0026841:13031-13050 | Msa1431480:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0026841 | gene | 11660 | 14940 | 11660 | ID=Msa1431480;Name=Msa1431480 |
| tig0026841 | mRNA | 11660 | 14940 | 11660 | ID=Msa1431480-mRNA-1;Parent=Msa1431480;Name=Msa1431480-mRNA-1;_AED=0.01;_eAED=0.01;_QI=151|1|1|1|1|1|2|366|494 |
| tig0026841 | exon | 11660 | 12268 | 11660 | ID=Msa1431480-mRNA-1:exon:7620;Parent=Msa1431480-mRNA-1 |
| tig0026841 | exon | 13548 | 14940 | 13548 | ID=Msa1431480-mRNA-1:exon:7619;Parent=Msa1431480-mRNA-1 |
| tig0026841 | five_prime_UTR | 14790 | 14940 | 14790 | ID=Msa1431480-mRNA-1:five_prime_utr;Parent=Msa1431480-mRNA-1 |
| tig0026841 | CDS | 13548 | 14789 | 13548 | ID=Msa1431480-mRNA-1:cds;Parent=Msa1431480-mRNA-1 |
| tig0026841 | CDS | 12026 | 12268 | 12026 | ID=Msa1431480-mRNA-1:cds;Parent=Msa1431480-mRNA-1 |
| tig0026841 | three_prime_UTR | 11660 | 12025 | 11660 | ID=Msa1431480-mRNA-1:three_prime_utr;Parent=Msa1431480-mRNA-1 |
| Gene Sequence |
| Protein sequence |
