Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0694200 | XP_003607978.1 | 93.731 | 335 | 7 | 4 | 1 | 330 | 1 | 326 | 0.0 | 589 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0694200 | G7JL88 | 93.731 | 335 | 7 | 4 | 1 | 330 | 1 | 326 | 0.0 | 589 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000560 | Msa0694200 | 0.826300 | 2.926430e-54 | -8.615850e-47 |
| Msa0626490 | Msa0694200 | 0.802773 | 4.785274e-49 | -8.615850e-47 |
| Msa0694200 | Msa0945110 | 0.808150 | 3.568181e-50 | -8.615850e-47 |
| Msa0694200 | Msa1037640 | 0.808087 | 3.678490e-50 | -8.615850e-47 |
| Msa0694200 | Msa1113340 | 0.827704 | 1.350500e-54 | -8.615850e-47 |
| Msa0694200 | Msa1123210 | 0.816423 | 5.572917e-52 | -8.615850e-47 |
| Msa0694200 | Msa1130280 | 0.827683 | 1.366588e-54 | -8.615850e-47 |
| Msa0694200 | Msa1160910 | 0.819774 | 9.734893e-53 | -8.615850e-47 |
| Msa0694200 | Msa1217050 | 0.804743 | 1.865499e-49 | -8.615850e-47 |
| Msa0694200 | Msa1217210 | 0.840057 | 1.093697e-57 | -8.615850e-47 |
| Msa0694200 | Msa1413620 | 0.804200 | 2.421564e-49 | -8.615850e-47 |
| Msa0694200 | Msa1431480 | 0.805008 | 1.642077e-49 | -8.615850e-47 |
| Msa0137880 | Msa0694200 | 0.806562 | 7.745122e-50 | -8.615850e-47 |
| Msa0182190 | Msa0694200 | 0.800340 | 1.509213e-48 | -8.615850e-47 |
| Msa0267110 | Msa0694200 | 0.817376 | 3.404578e-52 | -8.615850e-47 |
| Msa0556170 | Msa0694200 | 0.982550 | 2.209674e-155 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0694200 | MtrunA17_Chr4g0044891 | 93.731 | 335 | 7 | 4 | 1 | 330 | 1 | 326 | 0.0 | 589 |
| Msa0694200 | MtrunA17_Chr6g0449901 | 89.080 | 348 | 18 | 4 | 1 | 330 | 1 | 346 | 0.0 | 574 |
| Msa0694200 | MtrunA17_Chr4g0027081 | 52.679 | 336 | 143 | 6 | 1 | 330 | 1 | 326 | 6.02e-123 | 356 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0694200 | AT5G55610.1 | 51.343 | 335 | 146 | 4 | 1 | 327 | 1 | 326 | 6.46e-105 | 310 |
| Msa0694200 | AT5G55610.2 | 50.649 | 231 | 97 | 4 | 1 | 223 | 1 | 222 | 2.64e-59 | 192 |
Find 82 sgRNAs with CRISPR-Local
Find 314 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGAGCTACTAACTTGAATT+TGG | 0.185964 | 4_4:-63489041 | Msa0694200:three_prime_UTR |
| GATGCACTATTTGCCTCTTT+TGG | 0.231224 | 4_4:-63491811 | Msa0694200:CDS |
| ACCAAGCAAGTTCAACTTCT+TGG | 0.236486 | 4_4:-63489459 | Msa0694200:CDS |
| ATGGCTTGGAAACTTCTTAA+AGG | 0.268888 | 4_4:-63489966 | Msa0694200:intron |
| AAAGCAGAGAATAGAGGTTT+AGG | 0.295661 | 4_4:+63491876 | None:intergenic |
| TAAGGTTAAATTATCGTATT+GGG | 0.333365 | 4_4:+63493988 | None:intergenic |
| ATCGTCATTGGCATTGAAAA+TGG | 0.334939 | 4_4:+63489506 | None:intergenic |
| TAGCTATACTTGTAGATCTA+TGG | 0.335649 | 4_4:-63493900 | Msa0694200:CDS |
| GAAAGCCCTTGAAGCCAAAT+TGG | 0.344438 | 4_4:+63493783 | None:intergenic |
| CTGGTACCAATTTGGCTTCA+AGG | 0.345953 | 4_4:-63493789 | Msa0694200:CDS |
| AGGATGTGCTGCTGGTGATT+TGG | 0.382760 | 4_4:-63489210 | Msa0694200:CDS |
| AGGTTGCCCTTACTTCAATA+AGG | 0.392106 | 4_4:-63489431 | Msa0694200:CDS |
| TGGCTTCAAGGGCTTTCTTT+CGG | 0.394306 | 4_4:-63493777 | Msa0694200:intron |
| TTAAGGTTAAATTATCGTAT+TGG | 0.404115 | 4_4:+63493987 | None:intergenic |
| AAGGTTTCTGTTGCAAAGCT+TGG | 0.406979 | 4_4:+63494046 | None:intergenic |
| ACCAGATCAACACGGTGTTC+TGG | 0.408130 | 4_4:+63491729 | None:intergenic |
| TGACTTATTTGAGAATATTA+CGG | 0.410949 | 4_4:-63491760 | Msa0694200:CDS |
| CCATTCGCTCTGAAACATAA+TGG | 0.424104 | 4_4:+63489985 | None:intergenic |
| AGCAGAAGAGGAAGCAGAAA+AGG | 0.434687 | 4_4:+63493840 | None:intergenic |
| AAAGAGGCAAATAGTGCATC+AGG | 0.438648 | 4_4:+63491814 | None:intergenic |
| GCGCAAAATGCTACAATGAT+TGG | 0.438885 | 4_4:+63489182 | None:intergenic |
| ACTGTCTTCGTCATCGTCAT+TGG | 0.446980 | 4_4:+63489494 | None:intergenic |
| TGCCACTTGAAATGCTTTGT+CGG | 0.447275 | 4_4:+63489160 | None:intergenic |
| AACCACACCTTATTGAAGTA+AGG | 0.448289 | 4_4:+63489424 | None:intergenic |
| AATTTGAAACGGAGGCAATA+AGG | 0.450658 | 4_4:+63494027 | None:intergenic |
| TCCAAGAAGTTGAACTTGCT+TGG | 0.452273 | 4_4:+63489458 | None:intergenic |
| CACTTGCAATGACTTCAATA+AGG | 0.453405 | 4_4:-63491842 | Msa0694200:CDS |
| GCCAGAACACCGTGTTGATC+TGG | 0.456801 | 4_4:-63491730 | Msa0694200:CDS |
| TGGTACCAATTTGGCTTCAA+GGG | 0.457675 | 4_4:-63493788 | Msa0694200:CDS |
| ACCCTTGTTCGTCCATCACT+TGG | 0.457968 | 4_4:-63489360 | Msa0694200:CDS |
| TGCTAGGAGTTGCAGCATCA+TGG | 0.479028 | 4_4:-63489569 | Msa0694200:CDS |
| AATTCAAAAGCAGAGAATAG+AGG | 0.479918 | 4_4:+63491870 | None:intergenic |
| AGCACCGATCCCTGCTCCTA+TGG | 0.484318 | 4_4:+63489383 | None:intergenic |
| CACAGTAACAGCTAAGAAAG+TGG | 0.484571 | 4_4:+63488943 | None:intergenic |
| TGCAGCTACAGCAGCAGAAG+AGG | 0.485508 | 4_4:+63493828 | None:intergenic |
| CCATCACTTGGCCAGTGGAT+TGG | 0.485537 | 4_4:-63489348 | Msa0694200:intron |
| GAAAAGAAGTAAACATAAGT+AGG | 0.487456 | 4_4:+63489716 | None:intergenic |
| CATCGTTGTTGAATTTGAAA+CGG | 0.489227 | 4_4:+63494016 | None:intergenic |
| TTTCTGTTGCAAAGCTTGGA+TGG | 0.491220 | 4_4:+63494050 | None:intergenic |
| CCAGCATCACAATATGCAAC+TGG | 0.492213 | 4_4:+63492002 | None:intergenic |
| GCCTTGCGAGTAGCTGATCT+AGG | 0.494720 | 4_4:+63489752 | None:intergenic |
| CAGAGAATAGAGGTTTAGGT+TGG | 0.496669 | 4_4:+63491880 | None:intergenic |
| CCATTATGTTTCAGAGCGAA+TGG | 0.519354 | 4_4:-63489985 | Msa0694200:CDS |
| CCAGTTGCATATTGTGATGC+TGG | 0.519689 | 4_4:-63492002 | Msa0694200:CDS |
| TTATGATCTTACCAATCCAC+TGG | 0.520316 | 4_4:+63489337 | None:intergenic |
| CGCCGACAAAGCATTTCAAG+TGG | 0.520834 | 4_4:-63489162 | Msa0694200:CDS |
| TTCGTCCATCACTTGGCCAG+TGG | 0.522512 | 4_4:-63489353 | Msa0694200:CDS |
| GCTAGGAGTTGCAGCATCAT+GGG | 0.526174 | 4_4:-63489568 | Msa0694200:CDS |
| GCCCTTACTTCAATAAGGTG+TGG | 0.528158 | 4_4:-63489426 | Msa0694200:CDS |
| AGTTCAACTTCTTGGACAGA+AGG | 0.529384 | 4_4:-63489451 | Msa0694200:CDS |
| TCTGCACGCGGCTCCAAAAG+AGG | 0.538832 | 4_4:+63491798 | None:intergenic |
| TGTGCTGCTGGTGATTTGGT+TGG | 0.542559 | 4_4:-63489206 | Msa0694200:CDS |
| CAGCTACTCGCAAGGCTGCA+AGG | 0.544366 | 4_4:-63489745 | Msa0694200:CDS |
| GCCTCCATAGGAGCAGGGAT+CGG | 0.554442 | 4_4:-63489387 | Msa0694200:CDS |
| TCTTTCTAATATTCTTCGAG+TGG | 0.562654 | 4_4:+63490016 | None:intergenic |
| CCAATCCACTGGCCAAGTGA+TGG | 0.565048 | 4_4:+63489348 | None:intergenic |
| ACAACACAAGTAACAATGGC+GGG | 0.567663 | 4_4:-63493925 | Msa0694200:exon |
| CGTTGTTGAATTTGAAACGG+AGG | 0.569269 | 4_4:+63494019 | None:intergenic |
| TTTACAAACCTCAAAATGAA+CGG | 0.569781 | 4_4:-63489106 | Msa0694200:three_prime_UTR |
| AGTAACAAAGTCACCCTCAT+GGG | 0.577849 | 4_4:+63488981 | None:intergenic |
| ATGGGTTGTTCAAGTAGGCA+TGG | 0.578157 | 4_4:-63489550 | Msa0694200:CDS |
| GCATCATGGGTTGTTCAAGT+AGG | 0.587111 | 4_4:-63489555 | Msa0694200:CDS |
| CAGTAACAAAGTCACCCTCA+TGG | 0.590913 | 4_4:+63488980 | None:intergenic |
| ATGTTTCAGAGCGAATGGCT+TGG | 0.594195 | 4_4:-63489980 | Msa0694200:CDS |
| CTATACAAAGTGCTTCTGAA+AGG | 0.598512 | 4_4:-63491950 | Msa0694200:CDS |
| TTGTAACATTCTTCCCATGA+GGG | 0.598724 | 4_4:-63488994 | Msa0694200:three_prime_UTR |
| TTATGCACAGGACACATGCT+AGG | 0.599684 | 4_4:-63489585 | Msa0694200:intron |
| ACCACACCTTATTGAAGTAA+GGG | 0.601634 | 4_4:+63489425 | None:intergenic |
| GGCCAAGTGATGGACGAACA+AGG | 0.608320 | 4_4:+63489358 | None:intergenic |
| ACCGATCCCTGCTCCTATGG+AGG | 0.615889 | 4_4:+63489386 | None:intergenic |
| TCCTAGATCAGCTACTCGCA+AGG | 0.622944 | 4_4:-63489753 | Msa0694200:CDS |
| AAGAACAACACAAGTAACAA+TGG | 0.628282 | 4_4:-63493929 | Msa0694200:exon |
| CTATACTTGTAGATCTATGG+AGG | 0.630412 | 4_4:-63493897 | Msa0694200:CDS |
| GCCAAGTGATGGACGAACAA+GGG | 0.637107 | 4_4:+63489359 | None:intergenic |
| GTTGTAACATTCTTCCCATG+AGG | 0.645898 | 4_4:-63488995 | Msa0694200:three_prime_UTR |
| AATAAGATCTTCAGATACTG+TGG | 0.646098 | 4_4:+63491977 | None:intergenic |
| AGATCTTCTATTTCTGCACG+CGG | 0.653709 | 4_4:+63491786 | None:intergenic |
| AACAACACAAGTAACAATGG+CGG | 0.655953 | 4_4:-63493926 | Msa0694200:exon |
| CTTATTTGAGAATATTACGG+AGG | 0.657164 | 4_4:-63491757 | Msa0694200:CDS |
| GTGGGCAGAACAACATTCAG+AGG | 0.670489 | 4_4:-63489692 | Msa0694200:intron |
| TGTGAAGCAAATCATACGTG+AGG | 0.685919 | 4_4:-63491688 | Msa0694200:intron |
| AGGGAACAACCAGATCAACA+CGG | 0.751632 | 4_4:+63491721 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAAGAAAAAATAATACTT+TGG | + | chr4_4:63490658-63490677 | None:intergenic | 10.0% |
| !!! | TTTTAACATCCAAATAAAAA+GGG | + | chr4_4:63489279-63489298 | None:intergenic | 15.0% |
| !!! | TTTTTAACATCCAAATAAAA+AGG | + | chr4_4:63489280-63489299 | None:intergenic | 15.0% |
| !!! | TTAATATTCATTCAGATTTT+AGG | - | chr4_4:63489432-63489451 | Msa0694200:CDS | 15.0% |
| !!! | TAATATTCATTCAGATTTTA+GGG | - | chr4_4:63489433-63489452 | Msa0694200:CDS | 15.0% |
| !!! | AATAATAATTTGTTCCAATT+TGG | - | chr4_4:63489836-63489855 | Msa0694200:intron | 15.0% |
| !!! | CATTTTGAAACAATTTTTTT+TGG | + | chr4_4:63490554-63490573 | None:intergenic | 15.0% |
| !! | TAAATACTTCAAAATATTCA+AGG | - | chr4_4:63490827-63490846 | Msa0694200:intron | 15.0% |
| !! | AAATACTTCAAAATATTCAA+GGG | - | chr4_4:63490828-63490847 | Msa0694200:intron | 15.0% |
| !!! | TATAATTTTTCGTTGTATTT+TGG | - | chr4_4:63490918-63490937 | Msa0694200:intron | 15.0% |
| !!! | TTTTTTTTGTTTTCAAAACT+CGG | - | chr4_4:63491437-63491456 | Msa0694200:intron | 15.0% |
| !! | AATAAACATATTAATTGAGT+TGG | - | chr4_4:63491583-63491602 | Msa0694200:intron | 15.0% |
| !! | ATAAGTATGAATTAAAAAGT+AGG | + | chr4_4:63491660-63491679 | None:intergenic | 15.0% |
| !!! | TTTTTAATTCATACTTATGT+AGG | - | chr4_4:63491662-63491681 | Msa0694200:intron | 15.0% |
| !!! | ATCTTGGTTTTATAATTTTA+AGG | - | chr4_4:63492014-63492033 | Msa0694200:intron | 15.0% |
| !!! | TTATAATTTTAAGGAGTATA+TGG | - | chr4_4:63492023-63492042 | Msa0694200:intron | 15.0% |
| !! | TAAGGTTAAATTATCGTATT+GGG | + | chr4_4:63489023-63489042 | None:intergenic | 20.0% |
| !! | TTAAGGTTAAATTATCGTAT+TGG | + | chr4_4:63489024-63489043 | None:intergenic | 20.0% |
| !!! | TTTTGATATTGTTTTTGAGA+TGG | - | chr4_4:63489305-63489324 | Msa0694200:intron | 20.0% |
| !!! | TTTGATATTGTTTTTGAGAT+GGG | - | chr4_4:63489306-63489325 | Msa0694200:intron | 20.0% |
| !!! | AATATTCATTCAGATTTTAG+GGG | - | chr4_4:63489434-63489453 | Msa0694200:CDS | 20.0% |
| !!! | TGATTAATGACTAGTATTTT+CGG | - | chr4_4:63490196-63490215 | Msa0694200:intron | 20.0% |
| !!! | ATTTTCAAACTTCAATAACT+TGG | - | chr4_4:63490243-63490262 | Msa0694200:intron | 20.0% |
| !! | GTAACATAGTATTAATTGAA+GGG | + | chr4_4:63490628-63490647 | None:intergenic | 20.0% |
| !! | TGTAACATAGTATTAATTGA+AGG | + | chr4_4:63490629-63490648 | None:intergenic | 20.0% |
| !! | AAATTATCCTAATCAACTAT+TGG | + | chr4_4:63490692-63490711 | None:intergenic | 20.0% |
| !! | AATAGTTGATTAGGATAATT+TGG | - | chr4_4:63490691-63490710 | Msa0694200:intron | 20.0% |
| !! | AATACTTCAAAATATTCAAG+GGG | - | chr4_4:63490829-63490848 | Msa0694200:intron | 20.0% |
| !! | TGACTTATTTGAGAATATTA+CGG | - | chr4_4:63491248-63491267 | Msa0694200:intron | 20.0% |
| !!! | TCTTGTTTTAACATTTAGTT+AGG | - | chr4_4:63491362-63491381 | Msa0694200:intron | 20.0% |
| !!! | TCTCATTTATTTTGAAATCT+TGG | - | chr4_4:63491998-63492017 | Msa0694200:CDS | 20.0% |
| !! | GTCAAATAAGTTTCAAAAAT+TGG | + | chr4_4:63492129-63492148 | None:intergenic | 20.0% |
| !! | TATGAAAAATAAAGCAAAGA+AGG | + | chr4_4:63492419-63492438 | None:intergenic | 20.0% |
| !! | AAAACTAATTGCTTGAAATT+TGG | + | chr4_4:63492709-63492728 | None:intergenic | 20.0% |
| !!! | TTGACTTGGTAATTTAAAAA+CGG | - | chr4_4:63492895-63492914 | Msa0694200:intron | 20.0% |
| !! | AGTTGAAATGAATTAAAATC+AGG | + | chr4_4:63493749-63493768 | None:intergenic | 20.0% |
| !! | TCACAAAAAACAAGGTTTTA+AGG | + | chr4_4:63489041-63489060 | None:intergenic | 25.0% |
| ! | CTTAAAAGTCACAAAAAACA+AGG | + | chr4_4:63489049-63489068 | None:intergenic | 25.0% |
| !!! | GGCTTTGGTTATTTTTATAA+GGG | - | chr4_4:63489327-63489346 | Msa0694200:intron | 25.0% |
| !!! | TTTGGTTATTTTTATAAGGG+TGG | - | chr4_4:63489330-63489349 | Msa0694200:intron | 25.0% |
| !!! | GTTTTTTAGTTCAGTTGATT+TGG | - | chr4_4:63489366-63489385 | Msa0694200:CDS | 25.0% |
| !!! | ATTTGGTGTTTTGATGATTT+TGG | - | chr4_4:63489383-63489402 | Msa0694200:CDS | 25.0% |
| !!! | TTTGGTGTTTTGATGATTTT+GGG | - | chr4_4:63489384-63489403 | Msa0694200:CDS | 25.0% |
| !!! | TTTTGATGATTTTGGGTAAT+TGG | - | chr4_4:63489391-63489410 | Msa0694200:CDS | 25.0% |
| !!! | TTTGATGATTTTGGGTAATT+GGG | - | chr4_4:63489392-63489411 | Msa0694200:CDS | 25.0% |
| !!! | TTTTAGGGGTTTTTTTATGA+TGG | - | chr4_4:63489448-63489467 | Msa0694200:CDS | 25.0% |
| !!! | TTTAGGGGTTTTTTTATGAT+GGG | - | chr4_4:63489449-63489468 | Msa0694200:CDS | 25.0% |
| !! | TTTTCTCTAACTATTACCAA+TGG | - | chr4_4:63489662-63489681 | Msa0694200:intron | 25.0% |
| !! | TAGTGGGATACATAATTTTT+AGG | - | chr4_4:63489912-63489931 | Msa0694200:intron | 25.0% |
| !! | AGTGGGATACATAATTTTTA+GGG | - | chr4_4:63489913-63489932 | Msa0694200:intron | 25.0% |
| !!! | AGATACTAGTTTTCTAACTT+TGG | - | chr4_4:63490219-63490238 | Msa0694200:intron | 25.0% |
| ! | TGAATCTTACAAATTTGCAT+TGG | - | chr4_4:63490325-63490344 | Msa0694200:intron | 25.0% |
| ! | GAATCTTACAAATTTGCATT+GGG | - | chr4_4:63490326-63490345 | Msa0694200:intron | 25.0% |
| ! | GAAGAAAATAATCTGAATTG+TGG | - | chr4_4:63490466-63490485 | Msa0694200:intron | 25.0% |
| ! | AAACAAACCAATAGTTGATT+AGG | - | chr4_4:63490682-63490701 | Msa0694200:intron | 25.0% |
| !! | CGTTTTTGTACTAAATCTTT+CGG | + | chr4_4:63491100-63491119 | None:intergenic | 25.0% |
| ! | AAGATAAGCTAAAAAACGAT+TGG | + | chr4_4:63491735-63491754 | None:intergenic | 25.0% |
| !! | TACTCATTTCTTTTCTCAAA+TGG | + | chr4_4:63491815-63491834 | None:intergenic | 25.0% |
| !! | TTACTAACTTGACTTGATAA+AGG | - | chr4_4:63491868-63491887 | Msa0694200:CDS | 25.0% |
| ! | AAAGAAAATTTAGGTCTCTA+AGG | + | chr4_4:63492255-63492274 | None:intergenic | 25.0% |
| ! | AGTACCAGAAAAGAAAATTT+AGG | + | chr4_4:63492264-63492283 | None:intergenic | 25.0% |
| ! | AAAATAAAGCAAAGAAGGTA+GGG | + | chr4_4:63492414-63492433 | None:intergenic | 25.0% |
| ! | AAAAATAAAGCAAAGAAGGT+AGG | + | chr4_4:63492415-63492434 | None:intergenic | 25.0% |
| ! | TGAACTATTATAGAGTAATG+TGG | + | chr4_4:63492515-63492534 | None:intergenic | 25.0% |
| ! | AGAATAGAATATCATGAAAG+AGG | - | chr4_4:63492743-63492762 | Msa0694200:intron | 25.0% |
| ! | GAAGTAACATGAAATTGAAT+TGG | - | chr4_4:63492793-63492812 | Msa0694200:intron | 25.0% |
| ! | TATTAAACTTTGACTGCTTT+AGG | + | chr4_4:63493131-63493150 | None:intergenic | 25.0% |
| ! | GAAAAGAAGTAAACATAAGT+AGG | + | chr4_4:63493295-63493314 | None:intergenic | 25.0% |
| !! | TTATGTTTACTTCTTTTCTG+TGG | - | chr4_4:63493297-63493316 | Msa0694200:intron | 25.0% |
| !! | TATGTTTACTTCTTTTCTGT+GGG | - | chr4_4:63493298-63493317 | Msa0694200:intron | 25.0% |
| !! | ATAGTTGATATTAAATGCTC+AGG | + | chr4_4:63493382-63493401 | None:intergenic | 25.0% |
| !! | AAAACTTTGTTCTTCTTTTC+AGG | - | chr4_4:63493778-63493797 | Msa0694200:CDS | 25.0% |
| ! | TTTACAAACCTCAAAATGAA+CGG | - | chr4_4:63493902-63493921 | Msa0694200:CDS | 25.0% |
| CATCGTTGTTGAATTTGAAA+CGG | + | chr4_4:63488995-63489014 | None:intergenic | 30.0% | |
| AAGAACAACACAAGTAACAA+TGG | - | chr4_4:63489079-63489098 | Msa0694200:three_prime_UTR | 30.0% | |
| TAGCTATACTTGTAGATCTA+TGG | - | chr4_4:63489108-63489127 | Msa0694200:three_prime_UTR | 30.0% | |
| !! | TTCTGCTTTTCAATCTTCTT+CGG | - | chr4_4:63489145-63489164 | Msa0694200:exon | 30.0% |
| !! | TCTTTCGGTATGTTTTTATG+TGG | - | chr4_4:63489246-63489265 | Msa0694200:intron | 30.0% |
| !! | GGAGTATTACCCTTTTTATT+TGG | - | chr4_4:63489267-63489286 | Msa0694200:intron | 30.0% |
| !!! | GGGCTTTGGTTATTTTTATA+AGG | - | chr4_4:63489326-63489345 | Msa0694200:intron | 30.0% |
| ! | ATACACACTTTTGATCAGAA+GGG | - | chr4_4:63489526-63489545 | Msa0694200:CDS | 30.0% |
| !!! | GATACATAATTTTTAGGGTG+CGG | - | chr4_4:63489918-63489937 | Msa0694200:intron | 30.0% |
| AGTTGAAATACTGAGATTTG+AGG | - | chr4_4:63489965-63489984 | Msa0694200:intron | 30.0% | |
| AAATACTGAGATTTGAGGAA+TGG | - | chr4_4:63489970-63489989 | Msa0694200:CDS | 30.0% | |
| ATTGTGTGAGAATGAGATAT+AGG | - | chr4_4:63490096-63490115 | Msa0694200:intron | 30.0% | |
| TGAGAATGAGATATAGGTTA+TGG | - | chr4_4:63490102-63490121 | Msa0694200:intron | 30.0% | |
| GAGAATGAGATATAGGTTAT+GGG | - | chr4_4:63490103-63490122 | Msa0694200:intron | 30.0% | |
| AGAATGAGATATAGGTTATG+GGG | - | chr4_4:63490104-63490123 | Msa0694200:intron | 30.0% | |
| TGTAAGATTCATGTATTACG+AGG | + | chr4_4:63490316-63490335 | None:intergenic | 30.0% | |
| AAATTTGCATTGGGATTTGA+TGG | - | chr4_4:63490335-63490354 | Msa0694200:intron | 30.0% | |
| TAATATGTAGATGACATGCA+AGG | - | chr4_4:63490369-63490388 | Msa0694200:intron | 30.0% | |
| CCTATATACACAAAGAATCA+TGG | + | chr4_4:63490413-63490432 | None:intergenic | 30.0% | |
| CCATGATTCTTTGTGTATAT+AGG | - | chr4_4:63490410-63490429 | Msa0694200:intron | 30.0% | |
| ATTGCATTGAAAATCGAAAG+CGG | + | chr4_4:63490581-63490600 | None:intergenic | 30.0% | |
| TTCAAAATATTCAAGGGGTT+AGG | - | chr4_4:63490834-63490853 | Msa0694200:intron | 30.0% | |
| TCAAAATATTCAAGGGGTTA+GGG | - | chr4_4:63490835-63490854 | Msa0694200:intron | 30.0% | |
| ! | TAGGGTTAAGTTCTGTATTT+TGG | - | chr4_4:63490853-63490872 | Msa0694200:intron | 30.0% |
| !! | GTTCTGTATTTTGGAAACAT+CGG | - | chr4_4:63490862-63490881 | Msa0694200:intron | 30.0% |
| AGATGTCATGAAACAAAGTA+AGG | + | chr4_4:63490953-63490972 | None:intergenic | 30.0% | |
| ! | ACTTTGTTTCATGACATCTT+TGG | - | chr4_4:63490954-63490973 | Msa0694200:intron | 30.0% |
| CTGGTATACTGAAATTAAAG+AGG | + | chr4_4:63490990-63491009 | None:intergenic | 30.0% | |
| AATAAGATCTTCAGATACTG+TGG | + | chr4_4:63491034-63491053 | None:intergenic | 30.0% | |
| AATTCAAAAGCAGAGAATAG+AGG | + | chr4_4:63491141-63491160 | None:intergenic | 30.0% | |
| !! | TATTCTCTGCTTTTGAATTG+AGG | - | chr4_4:63491142-63491161 | Msa0694200:intron | 30.0% |
| CTTATTTGAGAATATTACGG+AGG | - | chr4_4:63491251-63491270 | Msa0694200:intron | 30.0% | |
| AGATAATTTACTTAGCGAAG+AGG | + | chr4_4:63491551-63491570 | None:intergenic | 30.0% | |
| TGAATCTCTAACTATGTGTA+TGG | - | chr4_4:63491696-63491715 | Msa0694200:CDS | 30.0% | |
| AGGTTAACCAATTATTAGTG+TGG | - | chr4_4:63491888-63491907 | Msa0694200:CDS | 30.0% | |
| TAAAGATATTGGGCTCAATT+AGG | + | chr4_4:63491944-63491963 | None:intergenic | 30.0% | |
| AATTGAGCCCAATATCTTTA+AGG | - | chr4_4:63491944-63491963 | Msa0694200:CDS | 30.0% | |
| ! | TCTAGCTCCTTAAAGATATT+GGG | + | chr4_4:63491954-63491973 | None:intergenic | 30.0% |
| !!! | TTCTTTTTGAGTCTAAACAG+TGG | - | chr4_4:63492161-63492180 | Msa0694200:intron | 30.0% |
| ! | GAGACCTAAATTTTCTTTTC+TGG | - | chr4_4:63492257-63492276 | Msa0694200:intron | 30.0% |
| TTGCTTGAAATTTGGAGATA+GGG | + | chr4_4:63492701-63492720 | None:intergenic | 30.0% | |
| ATTGCTTGAAATTTGGAGAT+AGG | + | chr4_4:63492702-63492721 | None:intergenic | 30.0% | |
| TCTTTCTAATATTCTTCGAG+TGG | + | chr4_4:63492995-63493014 | None:intergenic | 30.0% | |
| ! | ACTTCTTAAAGGTATGTTCT+CGG | - | chr4_4:63493053-63493072 | Msa0694200:intron | 30.0% |
| ! | GAAGAACAAAGTTTTGCTTT+AGG | + | chr4_4:63493773-63493792 | None:intergenic | 30.0% |
| ATGAGCTACTAACTTGAATT+TGG | - | chr4_4:63493967-63493986 | Msa0694200:five_prime_UTR | 30.0% | |
| !!! | TTTACCTCTTTTTAGCTGAA+AGG | - | chr4_4:63493990-63494009 | Msa0694200:five_prime_UTR | 30.0% |
| !!! | TTACCTCTTTTTAGCTGAAA+GGG | - | chr4_4:63493991-63494010 | Msa0694200:five_prime_UTR | 30.0% |
| ! | AATTTGAAACGGAGGCAATA+AGG | + | chr4_4:63488984-63489003 | None:intergenic | 35.0% |
| AACAACACAAGTAACAATGG+CGG | - | chr4_4:63489082-63489101 | Msa0694200:three_prime_UTR | 35.0% | |
| CTATACTTGTAGATCTATGG+AGG | - | chr4_4:63489111-63489130 | Msa0694200:three_prime_UTR | 35.0% | |
| !!! | ATTGTTTTTGAGATGGGCTT+TGG | - | chr4_4:63489312-63489331 | Msa0694200:intron | 35.0% |
| !! | TGATTTTGGGTAATTGGGTA+TGG | - | chr4_4:63489397-63489416 | Msa0694200:CDS | 35.0% |
| ! | CATACACACTTTTGATCAGA+AGG | - | chr4_4:63489525-63489544 | Msa0694200:CDS | 35.0% |
| ! | ACACTTTTGATCACAAGGAT+CGG | + | chr4_4:63489572-63489591 | None:intergenic | 35.0% |
| ATGAAGCAATGACATAGAGA+CGG | + | chr4_4:63489709-63489728 | None:intergenic | 35.0% | |
| TCTCTATGTCATTGCTTCAT+AGG | - | chr4_4:63489709-63489728 | Msa0694200:CDS | 35.0% | |
| CTCTATGTCATTGCTTCATA+GGG | - | chr4_4:63489710-63489729 | Msa0694200:CDS | 35.0% | |
| ATAGTACCACTAACTTAGCA+AGG | - | chr4_4:63489801-63489820 | Msa0694200:intron | 35.0% | |
| TAGTACCACTAACTTAGCAA+GGG | - | chr4_4:63489802-63489821 | Msa0694200:intron | 35.0% | |
| TAATACCCTTGCTAAGTTAG+TGG | + | chr4_4:63489810-63489829 | None:intergenic | 35.0% | |
| TGTAATAGACGTAGCCAAAT+TGG | + | chr4_4:63489853-63489872 | None:intergenic | 35.0% | |
| !!! | TTTTAGGGTGCGGTTAAATT+AGG | - | chr4_4:63489928-63489947 | Msa0694200:intron | 35.0% |
| AAGTCTGTAAACCGATCAAT+GGG | + | chr4_4:63490276-63490295 | None:intergenic | 35.0% | |
| TAAGTCTGTAAACCGATCAA+TGG | + | chr4_4:63490277-63490296 | None:intergenic | 35.0% | |
| GATGACATGCAAGGAAAAAA+AGG | - | chr4_4:63490378-63490397 | Msa0694200:intron | 35.0% | |
| !! | AAGCGACACTCATTTTGAAA+CGG | + | chr4_4:63490528-63490547 | None:intergenic | 35.0% |
| ATTGCACACAGATTAAGGAA+TGG | + | chr4_4:63490748-63490767 | None:intergenic | 35.0% | |
| TTCCTTAATCTGTGTGCAAT+TGG | - | chr4_4:63490748-63490767 | Msa0694200:intron | 35.0% | |
| AAAGCGACACTCATTTGAAA+CGG | - | chr4_4:63490773-63490792 | Msa0694200:intron | 35.0% | |
| ! | ACATCGGAAGTGTAAAAGAT+TGG | - | chr4_4:63490878-63490897 | Msa0694200:intron | 35.0% |
| ! | CATCGGAAGTGTAAAAGATT+GGG | - | chr4_4:63490879-63490898 | Msa0694200:intron | 35.0% |
| ! | CTATACAAAGTGCTTCTGAA+AGG | - | chr4_4:63491058-63491077 | Msa0694200:intron | 35.0% |
| AAAGCAGAGAATAGAGGTTT+AGG | + | chr4_4:63491135-63491154 | None:intergenic | 35.0% | |
| CACTTGCAATGACTTCAATA+AGG | - | chr4_4:63491166-63491185 | Msa0694200:intron | 35.0% | |
| ! | TGCTTCACAGACTTTTTGAA+GGG | + | chr4_4:63491309-63491328 | None:intergenic | 35.0% |
| ! | TTGCTTCACAGACTTTTTGA+AGG | + | chr4_4:63491310-63491329 | None:intergenic | 35.0% |
| AATGACAAGTCACGTTCTTT+GGG | + | chr4_4:63491470-63491489 | None:intergenic | 35.0% | |
| AAATGACAAGTCACGTTCTT+TGG | + | chr4_4:63491471-63491490 | None:intergenic | 35.0% | |
| TAGCTTATCTTCTCCTCTTA+AGG | - | chr4_4:63491744-63491763 | Msa0694200:CDS | 35.0% | |
| ! | AGCTTTTACGGAAAATCGTT+TGG | + | chr4_4:63491780-63491799 | None:intergenic | 35.0% |
| GTGACATCCACACTAATAAT+TGG | + | chr4_4:63491898-63491917 | None:intergenic | 35.0% | |
| TTAGTGTGGATGTCACATTT+CGG | - | chr4_4:63491902-63491921 | Msa0694200:CDS | 35.0% | |
| ! | CTCTAGCTCCTTAAAGATAT+TGG | + | chr4_4:63491955-63491974 | None:intergenic | 35.0% |
| !! | AATGAAGCTAAGGTTGATAG+TGG | - | chr4_4:63492190-63492209 | Msa0694200:intron | 35.0% |
| ! | CAAGGCATCTCAAAAGTTTA+TGG | + | chr4_4:63492217-63492236 | None:intergenic | 35.0% |
| !!! | TAAACTTTTGAGATGCCTTG+AGG | - | chr4_4:63492217-63492236 | Msa0694200:intron | 35.0% |
| !! | TTTTCTTTTCTGGTACTGCA+TGG | - | chr4_4:63492267-63492286 | Msa0694200:intron | 35.0% |
| GAAGATCATCTGAGTAACAA+GGG | + | chr4_4:63492335-63492354 | None:intergenic | 35.0% | |
| TGAAGATCATCTGAGTAACA+AGG | + | chr4_4:63492336-63492355 | None:intergenic | 35.0% | |
| ! | AGGCAGAAGCATAATTTGAT+GGG | + | chr4_4:63492385-63492404 | None:intergenic | 35.0% |
| TTGAAATTTGGAGATAGGGT+TGG | + | chr4_4:63492697-63492716 | None:intergenic | 35.0% | |
| !! | TCATGAAAGAGGTGTTTAAG+AGG | - | chr4_4:63492754-63492773 | Msa0694200:intron | 35.0% |
| !! | CATGAAAGAGGTGTTTAAGA+GGG | - | chr4_4:63492755-63492774 | Msa0694200:intron | 35.0% |
| ! | TGCCTTTTCTATATTCCTGA+TGG | - | chr4_4:63492861-63492880 | Msa0694200:intron | 35.0% |
| GTCCATCAGGAATATAGAAA+AGG | + | chr4_4:63492866-63492885 | None:intergenic | 35.0% | |
| ! | ATGGCTTGGAAACTTCTTAA+AGG | - | chr4_4:63493042-63493061 | Msa0694200:intron | 35.0% |
| ACTCTATGTTCATTATGCAC+AGG | - | chr4_4:63493411-63493430 | Msa0694200:intron | 35.0% | |
| ! | ATCGTCATTGGCATTGAAAA+TGG | + | chr4_4:63493505-63493524 | None:intergenic | 35.0% |
| ACCACACCTTATTGAAGTAA+GGG | + | chr4_4:63493586-63493605 | None:intergenic | 35.0% | |
| AACCACACCTTATTGAAGTA+AGG | + | chr4_4:63493587-63493606 | None:intergenic | 35.0% | |
| !!! | TCTTTAGTTTTTGCCTCCAT+AGG | - | chr4_4:63493609-63493628 | Msa0694200:intron | 35.0% |
| TTATGATCTTACCAATCCAC+TGG | + | chr4_4:63493674-63493693 | None:intergenic | 35.0% | |
| ! | AGATACATCCGTTCATTTTG+AGG | + | chr4_4:63493913-63493932 | None:intergenic | 35.0% |
| TTGTAACATTCTTCCCATGA+GGG | - | chr4_4:63494014-63494033 | Msa0694200:five_prime_UTR | 35.0% | |
| TTTCTGTTGCAAAGCTTGGA+TGG | + | chr4_4:63488961-63488980 | None:intergenic | 40.0% | |
| AAGGTTTCTGTTGCAAAGCT+TGG | + | chr4_4:63488965-63488984 | None:intergenic | 40.0% | |
| ! | CGTTGTTGAATTTGAAACGG+AGG | + | chr4_4:63488992-63489011 | None:intergenic | 40.0% |
| ACAACACAAGTAACAATGGC+GGG | - | chr4_4:63489083-63489102 | Msa0694200:three_prime_UTR | 40.0% | |
| ! | TTTTGCTGCTGGTACCAATT+TGG | - | chr4_4:63489211-63489230 | Msa0694200:CDS | 40.0% |
| ! | TGGTACCAATTTGGCTTCAA+GGG | - | chr4_4:63489220-63489239 | Msa0694200:intron | 40.0% |
| !!! | AGGGGTTTTTTTATGATGGG+TGG | - | chr4_4:63489452-63489471 | Msa0694200:CDS | 40.0% |
| ! | ACACTTTTGATCAGAAGGGT+AGG | - | chr4_4:63489530-63489549 | Msa0694200:CDS | 40.0% |
| TCACATATGTCATGTCGTGT+CGG | + | chr4_4:63489619-63489638 | None:intergenic | 40.0% | |
| TCAAATTGCAGCAGCTATAG+TGG | + | chr4_4:63489876-63489895 | None:intergenic | 40.0% | |
| ! | TGTGATTGCTTGCTAGGAAA+GGG | - | chr4_4:63490044-63490063 | Msa0694200:intron | 40.0% |
| AGATATAGGTTATGGGGTCA+TGG | - | chr4_4:63490110-63490129 | Msa0694200:intron | 40.0% | |
| GATATAGGTTATGGGGTCAT+GGG | - | chr4_4:63490111-63490130 | Msa0694200:intron | 40.0% | |
| ! | TTGGTAATTCCCCCATTGAT+CGG | - | chr4_4:63490262-63490281 | Msa0694200:intron | 40.0% |
| AGTCTGTAAACCGATCAATG+GGG | + | chr4_4:63490275-63490294 | None:intergenic | 40.0% | |
| TGCATTGGGATTTGATGGAA+AGG | - | chr4_4:63490340-63490359 | Msa0694200:intron | 40.0% | |
| !!! | GACACTCATTTTGAAACGGA+GGG | + | chr4_4:63490524-63490543 | None:intergenic | 40.0% |
| AGCCAATTGCACACAGATTA+AGG | + | chr4_4:63490753-63490772 | None:intergenic | 40.0% | |
| CAGAGAATAGAGGTTTAGGT+TGG | + | chr4_4:63491131-63491150 | None:intergenic | 40.0% | |
| AAAGAGGCAAATAGTGCATC+AGG | + | chr4_4:63491197-63491216 | None:intergenic | 40.0% | |
| ! | GATGCACTATTTGCCTCTTT+TGG | - | chr4_4:63491197-63491216 | Msa0694200:intron | 40.0% |
| !! | AGATCTTCTATTTCTGCACG+CGG | + | chr4_4:63491225-63491244 | None:intergenic | 40.0% |
| TGTGAAGCAAATCATACGTG+AGG | - | chr4_4:63491320-63491339 | Msa0694200:intron | 40.0% | |
| TAGGTAAGCGTAGAGAAAAG+TGG | + | chr4_4:63491641-63491660 | None:intergenic | 40.0% | |
| ! | TGGTTCAGCTTTTCCTTAAG+AGG | + | chr4_4:63491760-63491779 | None:intergenic | 40.0% |
| ! | CGATTTTCCGTAAAAGCTCT+CGG | - | chr4_4:63491782-63491801 | Msa0694200:CDS | 40.0% |
| ! | CATTCTTCCGAGAGCTTTTA+CGG | + | chr4_4:63491792-63491811 | None:intergenic | 40.0% |
| GTGGTGTAGTAATGAAGCTA+AGG | - | chr4_4:63492180-63492199 | Msa0694200:intron | 40.0% | |
| ATGCCTTGAGGCTCAATAAA+TGG | - | chr4_4:63492229-63492248 | Msa0694200:intron | 40.0% | |
| GATAAATGATGTTGAGCCAG+AGG | + | chr4_4:63492303-63492322 | None:intergenic | 40.0% | |
| ! | CAGGCAGAAGCATAATTTGA+TGG | + | chr4_4:63492386-63492405 | None:intergenic | 40.0% |
| GGATTAATCGAAGCTTGATG+AGG | + | chr4_4:63492552-63492571 | None:intergenic | 40.0% | |
| GGGAAAGATGCAAGACAAAT+GGG | + | chr4_4:63492573-63492592 | None:intergenic | 40.0% | |
| AGTTTCCTTGTCAAGTGAAG+GGG | + | chr4_4:63492594-63492613 | None:intergenic | 40.0% | |
| GAGTTTCCTTGTCAAGTGAA+GGG | + | chr4_4:63492595-63492614 | None:intergenic | 40.0% | |
| CTTCACTTGACAAGGAAACT+CGG | - | chr4_4:63492594-63492613 | Msa0694200:intron | 40.0% | |
| TTCACTTGACAAGGAAACTC+GGG | - | chr4_4:63492595-63492614 | Msa0694200:intron | 40.0% | |
| ! | GAAACTCGGGATACAGTTTT+AGG | - | chr4_4:63492608-63492627 | Msa0694200:intron | 40.0% |
| ATCTCTTCCGAGTTATATGC+AGG | - | chr4_4:63492640-63492659 | Msa0694200:intron | 40.0% | |
| TCTCTTCCGAGTTATATGCA+GGG | - | chr4_4:63492641-63492660 | Msa0694200:intron | 40.0% | |
| AAGCATCCCTGCATATAACT+CGG | + | chr4_4:63492650-63492669 | None:intergenic | 40.0% | |
| TCAACAGAAAAGAGTCCATC+AGG | + | chr4_4:63492879-63492898 | None:intergenic | 40.0% | |
| !! | TGGACTCTTTTCTGTTGACT+TGG | - | chr4_4:63492881-63492900 | Msa0694200:intron | 40.0% |
| !! | CCATTCGCTCTGAAACATAA+TGG | + | chr4_4:63493026-63493045 | None:intergenic | 40.0% |
| CCATTATGTTTCAGAGCGAA+TGG | - | chr4_4:63493023-63493042 | Msa0694200:intron | 40.0% | |
| ACCAAGCAAGTTCAACTTCT+TGG | - | chr4_4:63493549-63493568 | Msa0694200:intron | 40.0% | |
| ! | TCCAAGAAGTTGAACTTGCT+TGG | + | chr4_4:63493553-63493572 | None:intergenic | 40.0% |
| AGTTCAACTTCTTGGACAGA+AGG | - | chr4_4:63493557-63493576 | Msa0694200:intron | 40.0% | |
| AGGTTGCCCTTACTTCAATA+AGG | - | chr4_4:63493577-63493596 | Msa0694200:intron | 40.0% | |
| GCGCAAAATGCTACAATGAT+TGG | + | chr4_4:63493829-63493848 | None:intergenic | 40.0% | |
| ! | TGCCACTTGAAATGCTTTGT+CGG | + | chr4_4:63493851-63493870 | None:intergenic | 40.0% |
| CAACCCTTTCAGCTAAAAAG+AGG | + | chr4_4:63493997-63494016 | None:intergenic | 40.0% | |
| GTTGTAACATTCTTCCCATG+AGG | - | chr4_4:63494013-63494032 | Msa0694200:five_prime_UTR | 40.0% | |
| AGTAACAAAGTCACCCTCAT+GGG | + | chr4_4:63494030-63494049 | None:intergenic | 40.0% | |
| CACAGTAACAGCTAAGAAAG+TGG | + | chr4_4:63494068-63494087 | None:intergenic | 40.0% | |
| AGCAGAAGAGGAAGCAGAAA+AGG | + | chr4_4:63489171-63489190 | None:intergenic | 45.0% | |
| ! | CTGGTACCAATTTGGCTTCA+AGG | - | chr4_4:63489219-63489238 | Msa0694200:intron | 45.0% |
| GAAAGCCCTTGAAGCCAAAT+TGG | + | chr4_4:63489228-63489247 | None:intergenic | 45.0% | |
| TGGCTTCAAGGGCTTTCTTT+CGG | - | chr4_4:63489231-63489250 | Msa0694200:intron | 45.0% | |
| AATTGGGTATGGCTGTGATG+TGG | - | chr4_4:63489408-63489427 | Msa0694200:CDS | 45.0% | |
| ATTGGGTATGGCTGTGATGT+GGG | - | chr4_4:63489409-63489428 | Msa0694200:CDS | 45.0% | |
| GCACTGCTAATCACATGTGT+CGG | - | chr4_4:63489492-63489511 | Msa0694200:CDS | 45.0% | |
| ! | CGGACACACTTTTGATCACA+AGG | + | chr4_4:63489577-63489596 | None:intergenic | 45.0% |
| GTATGGGACACAACAAGTGT+CGG | + | chr4_4:63489597-63489616 | None:intergenic | 45.0% | |
| ! | ATGTCATGTCGTGTCGGTAT+GGG | + | chr4_4:63489613-63489632 | None:intergenic | 45.0% |
| ! | TATGTCATGTCGTGTCGGTA+TGG | + | chr4_4:63489614-63489633 | None:intergenic | 45.0% |
| CTTGTCAATCGCAGATTGCA+CGG | - | chr4_4:63489738-63489757 | Msa0694200:CDS | 45.0% | |
| TTGTCAATCGCAGATTGCAC+GGG | - | chr4_4:63489739-63489758 | Msa0694200:CDS | 45.0% | |
| ACAATCCTGCTAGATGCTAG+TGG | - | chr4_4:63489895-63489914 | Msa0694200:intron | 45.0% | |
| CAATCCTGCTAGATGCTAGT+GGG | - | chr4_4:63489896-63489915 | Msa0694200:intron | 45.0% | |
| CTTTCCTAGCAAGCAATCAC+AGG | + | chr4_4:63490045-63490064 | None:intergenic | 45.0% | |
| ! | CTGTGATTGCTTGCTAGGAA+AGG | - | chr4_4:63490043-63490062 | Msa0694200:intron | 45.0% |
| ! | GTGATTGCTTGCTAGGAAAG+GGG | - | chr4_4:63490045-63490064 | Msa0694200:intron | 45.0% |
| ! | TGATTGCTTGCTAGGAAAGG+GGG | - | chr4_4:63490046-63490065 | Msa0694200:intron | 45.0% |
| GTCTGTAAACCGATCAATGG+GGG | + | chr4_4:63490274-63490293 | None:intergenic | 45.0% | |
| AACGGAGGGAGTAGTAAAAC+TGG | + | chr4_4:63490510-63490529 | None:intergenic | 45.0% | |
| !!! | CGACACTCATTTTGAAACGG+AGG | + | chr4_4:63490525-63490544 | None:intergenic | 45.0% |
| ! | CGACACTCATTTGAAACGGA+GGG | - | chr4_4:63490777-63490796 | Msa0694200:intron | 45.0% |
| CCAGCATCACAATATGCAAC+TGG | + | chr4_4:63491009-63491028 | None:intergenic | 45.0% | |
| CCAGTTGCATATTGTGATGC+TGG | - | chr4_4:63491006-63491025 | Msa0694200:intron | 45.0% | |
| AGGGAACAACCAGATCAACA+CGG | + | chr4_4:63491290-63491309 | None:intergenic | 45.0% | |
| AGGCCATTTATTGAGCCTCA+AGG | + | chr4_4:63492235-63492254 | None:intergenic | 45.0% | |
| !! | AATTTGATGGGCTGATGACG+AGG | + | chr4_4:63492373-63492392 | None:intergenic | 45.0% |
| GGGGAAAGATGCAAGACAAA+TGG | + | chr4_4:63492574-63492593 | None:intergenic | 45.0% | |
| GTTTCCTTGTCAAGTGAAGG+GGG | + | chr4_4:63492593-63492612 | None:intergenic | 45.0% | |
| CGAGTTTCCTTGTCAAGTGA+AGG | + | chr4_4:63492596-63492615 | None:intergenic | 45.0% | |
| ATGTTTCAGAGCGAATGGCT+TGG | - | chr4_4:63493028-63493047 | Msa0694200:intron | 45.0% | |
| TTATGCACAGGACACATGCT+AGG | - | chr4_4:63493423-63493442 | Msa0694200:intron | 45.0% | |
| ! | GCATCATGGGTTGTTCAAGT+AGG | - | chr4_4:63493453-63493472 | Msa0694200:intron | 45.0% |
| ! | ATGGGTTGTTCAAGTAGGCA+TGG | - | chr4_4:63493458-63493477 | Msa0694200:intron | 45.0% |
| ACTGTCTTCGTCATCGTCAT+TGG | + | chr4_4:63493517-63493536 | None:intergenic | 45.0% | |
| GCCCTTACTTCAATAAGGTG+TGG | - | chr4_4:63493582-63493601 | Msa0694200:intron | 45.0% | |
| ! | TTTTTGCCTCCATAGGAGCA+GGG | - | chr4_4:63493616-63493635 | Msa0694200:intron | 45.0% |
| !! | TTCTTTTCAGGATGTGCTGC+TGG | - | chr4_4:63493790-63493809 | Msa0694200:CDS | 45.0% |
| CAGTAACAAAGTCACCCTCA+TGG | + | chr4_4:63494031-63494050 | None:intergenic | 45.0% | |
| CGACACTAACATGTCGCCAT+TGG | + | chr4_4:63489681-63489700 | None:intergenic | 50.0% | |
| ATCGCAGATTGCACGGGAAA+TGG | - | chr4_4:63489745-63489764 | Msa0694200:CDS | 50.0% | |
| GTATCCCACTAGCATCTAGC+AGG | + | chr4_4:63489903-63489922 | None:intergenic | 50.0% | |
| GTGACCTGTGATTGCTTGCT+AGG | - | chr4_4:63490038-63490057 | Msa0694200:intron | 50.0% | |
| TTGCTAGGAAAGGGGGACAA+GGG | - | chr4_4:63490053-63490072 | Msa0694200:intron | 50.0% | |
| ! | GCGACACTCATTTGAAACGG+AGG | - | chr4_4:63490776-63490795 | Msa0694200:intron | 50.0% |
| ACCAGATCAACACGGTGTTC+TGG | + | chr4_4:63491282-63491301 | None:intergenic | 50.0% | |
| GAGCTCTACAAACAGCTGAG+TGG | + | chr4_4:63492087-63492106 | None:intergenic | 50.0% | |
| GTTGAGCCAGAGGAGAAAAC+AGG | + | chr4_4:63492293-63492312 | None:intergenic | 50.0% | |
| ! | CAAAGAAGGTAGGGAAGTGC+AGG | + | chr4_4:63492405-63492424 | None:intergenic | 50.0% |
| CTTTCCCCCTTCACTTGACA+AGG | - | chr4_4:63492586-63492605 | Msa0694200:intron | 50.0% | |
| TCCTAGATCAGCTACTCGCA+AGG | - | chr4_4:63493255-63493274 | Msa0694200:intron | 50.0% | |
| GTGGGCAGAACAACATTCAG+AGG | - | chr4_4:63493316-63493335 | Msa0694200:intron | 50.0% | |
| TGCTAGGAGTTGCAGCATCA+TGG | - | chr4_4:63493439-63493458 | Msa0694200:intron | 50.0% | |
| GCTAGGAGTTGCAGCATCAT+GGG | - | chr4_4:63493440-63493459 | Msa0694200:intron | 50.0% | |
| ! | GTTTTTGCCTCCATAGGAGC+AGG | - | chr4_4:63493615-63493634 | Msa0694200:intron | 50.0% |
| ACCCTTGTTCGTCCATCACT+TGG | - | chr4_4:63493648-63493667 | Msa0694200:intron | 50.0% | |
| !! | GCCAAGTGATGGACGAACAA+GGG | + | chr4_4:63493652-63493671 | None:intergenic | 50.0% |
| ! | AGGATGTGCTGCTGGTGATT+TGG | - | chr4_4:63493798-63493817 | Msa0694200:CDS | 50.0% |
| !! | TGTGCTGCTGGTGATTTGGT+TGG | - | chr4_4:63493802-63493821 | Msa0694200:CDS | 50.0% |
| ! | CGCCGACAAAGCATTTCAAG+TGG | - | chr4_4:63493846-63493865 | Msa0694200:CDS | 50.0% |
| TGCAGCTACAGCAGCAGAAG+AGG | + | chr4_4:63489183-63489202 | None:intergenic | 55.0% | |
| ! | GCAGCTGCTTCTTTTGCTGC+TGG | - | chr4_4:63489200-63489219 | Msa0694200:CDS | 55.0% |
| CTTGCTAGGAAAGGGGGACA+AGG | - | chr4_4:63490052-63490071 | Msa0694200:intron | 55.0% | |
| AGGTTATGGGGTCATGGGAG+TGG | - | chr4_4:63490116-63490135 | Msa0694200:intron | 55.0% | |
| TATGGGGTCATGGGAGTGGT+AGG | - | chr4_4:63490120-63490139 | Msa0694200:intron | 55.0% | |
| ATGGGGTCATGGGAGTGGTA+GGG | - | chr4_4:63490121-63490140 | Msa0694200:intron | 55.0% | |
| GGGAGTGGTAGGGTTTAGCT+AGG | - | chr4_4:63490131-63490150 | Msa0694200:intron | 55.0% | |
| ! | GCCAGAACACCGTGTTGATC+TGG | - | chr4_4:63491278-63491297 | Msa0694200:intron | 55.0% |
| ! | GCATGGCCTGTTTTCTCCTC+TGG | - | chr4_4:63492284-63492303 | Msa0694200:intron | 55.0% |
| GCCTTGCGAGTAGCTGATCT+AGG | + | chr4_4:63493259-63493278 | None:intergenic | 55.0% | |
| !! | GGCCAAGTGATGGACGAACA+AGG | + | chr4_4:63493653-63493672 | None:intergenic | 55.0% |
| TTCGTCCATCACTTGGCCAG+TGG | - | chr4_4:63493655-63493674 | Msa0694200:intron | 55.0% | |
| CCAATCCACTGGCCAAGTGA+TGG | + | chr4_4:63493663-63493682 | None:intergenic | 55.0% | |
| CCATCACTTGGCCAGTGGAT+TGG | - | chr4_4:63493660-63493679 | Msa0694200:intron | 55.0% | |
| CACAAGGATCGGCGCTACAG+TGG | + | chr4_4:63489561-63489580 | None:intergenic | 60.0% | |
| TCTGCACGCGGCTCCAAAAG+AGG | + | chr4_4:63491213-63491232 | None:intergenic | 60.0% | |
| CAGCTACTCGCAAGGCTGCA+AGG | - | chr4_4:63493263-63493282 | Msa0694200:intron | 60.0% | |
| GCCTCCATAGGAGCAGGGAT+CGG | - | chr4_4:63493621-63493640 | Msa0694200:intron | 60.0% | |
| ACCGATCCCTGCTCCTATGG+AGG | + | chr4_4:63493625-63493644 | None:intergenic | 60.0% | |
| !! | AGCACCGATCCCTGCTCCTA+TGG | + | chr4_4:63493628-63493647 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 63488914 | 63494116 | 63488914 | ID=Msa0694200;Name=Msa0694200 |
| chr4_4 | mRNA | 63488914 | 63494116 | 63488914 | ID=Msa0694200-mRNA-1;Parent=Msa0694200;Name=Msa0694200-mRNA-1;_AED=0.06;_eAED=0.06;_QI=184|1|1|1|1|1|6|240|330 |
| chr4_4 | exon | 63488914 | 63489230 | 63488914 | ID=Msa0694200-mRNA-1:exon:17909;Parent=Msa0694200-mRNA-1 |
| chr4_4 | exon | 63489349 | 63489597 | 63489349 | ID=Msa0694200-mRNA-1:exon:17908;Parent=Msa0694200-mRNA-1 |
| chr4_4 | exon | 63489693 | 63489779 | 63489693 | ID=Msa0694200-mRNA-1:exon:17907;Parent=Msa0694200-mRNA-1 |
| chr4_4 | exon | 63489967 | 63490051 | 63489967 | ID=Msa0694200-mRNA-1:exon:17906;Parent=Msa0694200-mRNA-1 |
| chr4_4 | exon | 63491689 | 63492028 | 63491689 | ID=Msa0694200-mRNA-1:exon:17905;Parent=Msa0694200-mRNA-1 |
| chr4_4 | exon | 63493778 | 63494116 | 63493778 | ID=Msa0694200-mRNA-1:exon:17904;Parent=Msa0694200-mRNA-1 |
| chr4_4 | five_prime_UTR | 63493933 | 63494116 | 63493933 | ID=Msa0694200-mRNA-1:five_prime_utr;Parent=Msa0694200-mRNA-1 |
| chr4_4 | CDS | 63493778 | 63493932 | 63493778 | ID=Msa0694200-mRNA-1:cds;Parent=Msa0694200-mRNA-1 |
| chr4_4 | CDS | 63491689 | 63492028 | 63491689 | ID=Msa0694200-mRNA-1:cds;Parent=Msa0694200-mRNA-1 |
| chr4_4 | CDS | 63489967 | 63490051 | 63489967 | ID=Msa0694200-mRNA-1:cds;Parent=Msa0694200-mRNA-1 |
| chr4_4 | CDS | 63489693 | 63489779 | 63489693 | ID=Msa0694200-mRNA-1:cds;Parent=Msa0694200-mRNA-1 |
| chr4_4 | CDS | 63489349 | 63489597 | 63489349 | ID=Msa0694200-mRNA-1:cds;Parent=Msa0694200-mRNA-1 |
| chr4_4 | CDS | 63489154 | 63489230 | 63489154 | ID=Msa0694200-mRNA-1:cds;Parent=Msa0694200-mRNA-1 |
| chr4_4 | three_prime_UTR | 63488914 | 63489153 | 63488914 | ID=Msa0694200-mRNA-1:three_prime_utr;Parent=Msa0694200-mRNA-1 |
| Gene Sequence |
| Protein sequence |
