Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0556350 | KAG4958417.1 | 85.714 | 56 | 8 | 0 | 1 | 56 | 152 | 207 | 1.26e-26 | 106 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0556350 | sp|O81153|PSB3B_ARATH | 97.059 | 34 | 1 | 0 | 1 | 34 | 152 | 185 | 2.69e-17 | 75.1 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0556350 | A0A371I6J2 | 71.014 | 69 | 20 | 0 | 1 | 69 | 152 | 220 | 6.58e-27 | 107 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0115370 | Msa0556350 | 0.803191 | 3.921380e-49 | -8.615850e-47 |
| Msa0131450 | Msa0556350 | 0.806276 | 8.899511e-50 | -8.615850e-47 |
| Msa0166750 | Msa0556350 | 0.830954 | 2.195098e-55 | -8.615850e-47 |
| Msa0183460 | Msa0556350 | 0.811494 | 6.807207e-51 | -8.615850e-47 |
| Msa0384880 | Msa0556350 | 0.817508 | 3.179307e-52 | -8.615850e-47 |
| Msa0280430 | Msa0556350 | 0.819913 | 9.047764e-53 | -8.615850e-47 |
| Msa0556350 | Msa0960830 | 0.801186 | 1.013975e-48 | -8.615850e-47 |
| Msa0556350 | Msa1365860 | 0.820504 | 6.625290e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0556350 | MtrunA17_Chr7g0255251 | 97.059 | 34 | 1 | 0 | 1 | 34 | 152 | 185 | 1.69e-18 | 75.5 |
| Msa0556350 | MtrunA17_Chr4g0045861 | 97.059 | 34 | 1 | 0 | 1 | 34 | 152 | 185 | 1.74e-18 | 75.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0556350 | AT1G77440.2 | 97.059 | 34 | 1 | 0 | 1 | 34 | 152 | 185 | 2.73e-18 | 75.1 |
| Msa0556350 | AT1G77440.1 | 97.059 | 34 | 1 | 0 | 1 | 34 | 152 | 185 | 2.73e-18 | 75.1 |
| Msa0556350 | AT1G21720.1 | 94.118 | 34 | 2 | 0 | 1 | 34 | 152 | 185 | 5.01e-18 | 74.3 |
Find 23 sgRNAs with CRISPR-Local
Find 350 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAAAAGACTTCGTTGTTGC+TGG | 0.312434 | 4_1:-54508430 | Msa0556350:five_prime_UTR |
| ATCCTTTCCTTTACTTCTGT+TGG | 0.340096 | 4_1:+54506324 | None:intergenic |
| ATCCTTTCCTTTACTTCTGT+TGG | 0.340096 | 4_1:+54506650 | None:intergenic |
| ACCGTGACTGTCTTAGTGGC+TGG | 0.366163 | 4_1:-54507230 | Msa0556350:CDS |
| GTAGACCGTGACTGTCTTAG+TGG | 0.447953 | 4_1:-54507234 | Msa0556350:CDS |
| CCGTGACTGTCTTAGTGGCT+GGG | 0.465306 | 4_1:-54507229 | Msa0556350:CDS |
| ACTTTAGGACAAACCATGTC+AGG | 0.468461 | 4_1:+54508361 | None:intergenic |
| TACAGATGATAACAGTGCTT+GGG | 0.500678 | 4_1:+54507254 | None:intergenic |
| CAGCACTCCAACAGAAGTAA+AGG | 0.504233 | 4_1:-54506331 | Msa0556350:CDS |
| CAGCACTCCAACAGAAGTAA+AGG | 0.504233 | 4_1:-54506657 | Msa0556350:CDS |
| CTACAGATGATAACAGTGCT+TGG | 0.527206 | 4_1:+54507253 | None:intergenic |
| ACTGCGTCCGAGTCTCTGTA+TGG | 0.530151 | 4_1:-54508406 | Msa0556350:five_prime_UTR |
| GTTTCTTATTCAGGAAGCTG+AGG | 0.568571 | 4_1:-54507295 | Msa0556350:intron |
| TGATAACAGTGCTTGGGAGA+TGG | 0.572635 | 4_1:+54507260 | None:intergenic |
| CGTGACTGTCTTAGTGGCTG+GGG | 0.572971 | 4_1:-54507228 | Msa0556350:CDS |
| GACTGTCTTAGTGGCTGGGG+TGG | 0.577441 | 4_1:-54507225 | Msa0556350:CDS |
| ATCGATGTTTAAGCCTGACA+TGG | 0.603428 | 4_1:-54508374 | Msa0556350:intron |
| CTCCAACAGAAGTAAAGGAA+AGG | 0.604008 | 4_1:-54506326 | Msa0556350:CDS |
| CTCCAACAGAAGTAAAGGAA+AGG | 0.604008 | 4_1:-54506652 | Msa0556350:CDS |
| ACTTGAAATACTTGACCAGA+TGG | 0.611301 | 4_1:+54506271 | None:intergenic |
| ACTTGAAATACTTGACCAGA+TGG | 0.611301 | 4_1:+54506597 | None:intergenic |
| ACAAGCACCATACAGAGACT+CGG | 0.663819 | 4_1:+54508399 | None:intergenic |
| CCCAGCCACTAAGACAGTCA+CGG | 0.679067 | 4_1:+54507229 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATATTATTTTTATTAATT+AGG | - | chr4_1:54507837-54507856 | Msa0556350:intron | 0.0% |
| !!! | TAATATTATTTTTATTAATT+AGG | - | chr4_1:54507837-54507856 | Msa0556350:intron | 0.0% |
| !!! | GTTAATTTAAAATAGTTATT+GGG | - | chr4_1:54507166-54507185 | Msa0556350:intron | 10.0% |
| !! | ATAAAAAATATTAATGTGTA+TGG | - | chr4_1:54507741-54507760 | Msa0556350:intron | 10.0% |
| !!! | TTATTTTTATTAATTAGGAT+TGG | - | chr4_1:54507842-54507861 | Msa0556350:intron | 10.0% |
| !!! | CAAGTTTTTAAAAATTAAAT+TGG | - | chr4_1:54507935-54507954 | Msa0556350:intron | 10.0% |
| !! | ATTTACATTATTATTAATCA+AGG | + | chr4_1:54507975-54507994 | None:intergenic | 10.0% |
| !! | AAAACATAATTTACATTATT+GGG | + | chr4_1:54507983-54508002 | None:intergenic | 10.0% |
| !!! | GTTAATTTAAAATAGTTATT+GGG | - | chr4_1:54507166-54507185 | Msa0556350:intron | 10.0% |
| !! | ATAAAAAATATTAATGTGTA+TGG | - | chr4_1:54507741-54507760 | Msa0556350:intron | 10.0% |
| !!! | TTATTTTTATTAATTAGGAT+TGG | - | chr4_1:54507842-54507861 | Msa0556350:intron | 10.0% |
| !!! | CAAGTTTTTAAAAATTAAAT+TGG | - | chr4_1:54507935-54507954 | Msa0556350:intron | 10.0% |
| !! | ATTTACATTATTATTAATCA+AGG | + | chr4_1:54507975-54507994 | None:intergenic | 10.0% |
| !! | AAAACATAATTTACATTATT+GGG | + | chr4_1:54507983-54508002 | None:intergenic | 10.0% |
| !!! | GGTTAATTTAAAATAGTTAT+TGG | - | chr4_1:54507165-54507184 | Msa0556350:intron | 15.0% |
| !!! | ATTCATCAATGATATTTTTT+AGG | - | chr4_1:54508268-54508287 | Msa0556350:intron | 15.0% |
| !!! | TTCATCAATGATATTTTTTA+GGG | - | chr4_1:54508269-54508288 | Msa0556350:intron | 15.0% |
| !! | CAAAACATAATTTACATTAT+TGG | + | chr4_1:54507984-54508003 | None:intergenic | 15.0% |
| !!! | GGTTAATTTAAAATAGTTAT+TGG | - | chr4_1:54507165-54507184 | Msa0556350:intron | 15.0% |
| !!! | ATTCATCAATGATATTTTTT+AGG | - | chr4_1:54508268-54508287 | Msa0556350:intron | 15.0% |
| !!! | TTCATCAATGATATTTTTTA+GGG | - | chr4_1:54508269-54508288 | Msa0556350:intron | 15.0% |
| !! | CAAAACATAATTTACATTAT+TGG | + | chr4_1:54507984-54508003 | None:intergenic | 15.0% |
| !!! | AGAATAACATGTCTTTTATT+TGG | + | chr4_1:54506864-54506883 | None:intergenic | 20.0% |
| !!! | TTCTTTAGTTGTTTGTTATT+GGG | - | chr4_1:54507556-54507575 | Msa0556350:intron | 20.0% |
| !!! | ATCATATTTTTGATCTCTTA+AGG | - | chr4_1:54507912-54507931 | Msa0556350:intron | 20.0% |
| !! | GCAGTTACTAATATATATAT+TGG | - | chr4_1:54508191-54508210 | Msa0556350:intron | 20.0% |
| !! | ACAATAAGTATAAACAAACA+TGG | + | chr4_1:54508232-54508251 | None:intergenic | 20.0% |
| !! | ATGTTTGTTTATACTTATTG+TGG | - | chr4_1:54508231-54508250 | Msa0556350:intron | 20.0% |
| !!! | AGAATAACATGTCTTTTATT+TGG | + | chr4_1:54506864-54506883 | None:intergenic | 20.0% |
| !!! | TTCTTTAGTTGTTTGTTATT+GGG | - | chr4_1:54507556-54507575 | Msa0556350:intron | 20.0% |
| !!! | ATCATATTTTTGATCTCTTA+AGG | - | chr4_1:54507912-54507931 | Msa0556350:intron | 20.0% |
| !! | GCAGTTACTAATATATATAT+TGG | - | chr4_1:54508191-54508210 | Msa0556350:intron | 20.0% |
| !! | ACAATAAGTATAAACAAACA+TGG | + | chr4_1:54508232-54508251 | None:intergenic | 20.0% |
| !! | ATGTTTGTTTATACTTATTG+TGG | - | chr4_1:54508231-54508250 | Msa0556350:intron | 20.0% |
| ! | GACAAAACAAGTTAAACTTT+AGG | + | chr4_1:54506379-54506398 | None:intergenic | 25.0% |
| !!! | GTAGAGAAATTTGTTATACA+TGG | + | chr4_1:54506553-54506572 | None:intergenic | 25.0% |
| !! | TGGATTGTATCTTCATTTTA+TGG | - | chr4_1:54506642-54506661 | Msa0556350:CDS | 25.0% |
| !!! | TCTTCATTTTATGGTTTTGA+TGG | - | chr4_1:54506651-54506670 | Msa0556350:CDS | 25.0% |
| !!! | GTCTTTTATTTGGAAATCTT+GGG | + | chr4_1:54506854-54506873 | None:intergenic | 25.0% |
| !!! | TGTCTTTTATTTGGAAATCT+TGG | + | chr4_1:54506855-54506874 | None:intergenic | 25.0% |
| !!! | CTTCTTTAGTTGTTTGTTAT+TGG | - | chr4_1:54507555-54507574 | Msa0556350:intron | 25.0% |
| !!! | TCTTTAGTTGTTTGTTATTG+GGG | - | chr4_1:54507557-54507576 | Msa0556350:intron | 25.0% |
| !! | AACCTAAACTTTTATCATAG+TGG | - | chr4_1:54508014-54508033 | Msa0556350:intron | 25.0% |
| !! | AACCTAAACTTTTATCATAG+TGG | - | chr4_1:54508014-54508033 | Msa0556350:intron | 25.0% |
| ! | GACAAAACAAGTTAAACTTT+AGG | + | chr4_1:54506379-54506398 | None:intergenic | 25.0% |
| !!! | GTAGAGAAATTTGTTATACA+TGG | + | chr4_1:54506553-54506572 | None:intergenic | 25.0% |
| !! | TGGATTGTATCTTCATTTTA+TGG | - | chr4_1:54506642-54506661 | Msa0556350:CDS | 25.0% |
| !!! | TCTTCATTTTATGGTTTTGA+TGG | - | chr4_1:54506651-54506670 | Msa0556350:CDS | 25.0% |
| !!! | GTCTTTTATTTGGAAATCTT+GGG | + | chr4_1:54506854-54506873 | None:intergenic | 25.0% |
| !!! | TGTCTTTTATTTGGAAATCT+TGG | + | chr4_1:54506855-54506874 | None:intergenic | 25.0% |
| !!! | CTTCTTTAGTTGTTTGTTAT+TGG | - | chr4_1:54507555-54507574 | Msa0556350:intron | 25.0% |
| !!! | TCTTTAGTTGTTTGTTATTG+GGG | - | chr4_1:54507557-54507576 | Msa0556350:intron | 25.0% |
| !! | AACCTAAACTTTTATCATAG+TGG | - | chr4_1:54508014-54508033 | Msa0556350:intron | 25.0% |
| !! | AACCTAAACTTTTATCATAG+TGG | - | chr4_1:54508014-54508033 | Msa0556350:intron | 25.0% |
| !! | TGTCTGTTTTTCACTTGTTT+TGG | - | chr4_1:54506444-54506463 | Msa0556350:intron | 30.0% |
| ! | TAAGAAGCATGTAGTGTTAA+AGG | + | chr4_1:54506512-54506531 | None:intergenic | 30.0% |
| TCCTCGTTATATGATCTTAA+AGG | + | chr4_1:54506679-54506698 | None:intergenic | 30.0% | |
| ACCACATTGAAAATTGTTGA+GGG | - | chr4_1:54506778-54506797 | Msa0556350:intron | 30.0% | |
| ATTGAAAATTGTTGAGGGAA+AGG | - | chr4_1:54506783-54506802 | Msa0556350:intron | 30.0% | |
| !! | TTATTCTGCTTTTACTGTTC+AGG | - | chr4_1:54506877-54506896 | Msa0556350:intron | 30.0% |
| ATCAAGCTAAGCTAAATCAT+GGG | + | chr4_1:54507345-54507364 | None:intergenic | 30.0% | |
| TATCAAGCTAAGCTAAATCA+TGG | + | chr4_1:54507346-54507365 | None:intergenic | 30.0% | |
| ! | AAAATCATAAGCTTCCCTTT+TGG | + | chr4_1:54507399-54507418 | None:intergenic | 30.0% |
| ! | AAGCTTATGATTTTTGTGCT+TGG | - | chr4_1:54507405-54507424 | Msa0556350:intron | 30.0% |
| AGCCACTATGATAAAAGTTT+AGG | + | chr4_1:54508019-54508038 | None:intergenic | 30.0% | |
| ! | CTTTTATCATAGTGGCTTAT+TGG | - | chr4_1:54508022-54508041 | Msa0556350:intron | 30.0% |
| ! | AGTAAAGGAAAGGATTTTGA+AGG | - | chr4_1:54508080-54508099 | Msa0556350:intron | 30.0% |
| ! | GTAAAGGAAAGGATTTTGAA+GGG | - | chr4_1:54508081-54508100 | Msa0556350:intron | 30.0% |
| !! | CAAGTATTTCAAGTTCACTA+TGG | - | chr4_1:54508134-54508153 | Msa0556350:intron | 30.0% |
| AGCCACTATGATAAAAGTTT+AGG | + | chr4_1:54508019-54508038 | None:intergenic | 30.0% | |
| ! | CTTTTATCATAGTGGCTTAT+TGG | - | chr4_1:54508022-54508041 | Msa0556350:intron | 30.0% |
| ! | AGTAAAGGAAAGGATTTTGA+AGG | - | chr4_1:54508080-54508099 | Msa0556350:intron | 30.0% |
| ! | GTAAAGGAAAGGATTTTGAA+GGG | - | chr4_1:54508081-54508100 | Msa0556350:intron | 30.0% |
| !! | TGTCTGTTTTTCACTTGTTT+TGG | - | chr4_1:54506444-54506463 | Msa0556350:intron | 30.0% |
| ! | TAAGAAGCATGTAGTGTTAA+AGG | + | chr4_1:54506512-54506531 | None:intergenic | 30.0% |
| TCCTCGTTATATGATCTTAA+AGG | + | chr4_1:54506679-54506698 | None:intergenic | 30.0% | |
| ACCACATTGAAAATTGTTGA+GGG | - | chr4_1:54506778-54506797 | Msa0556350:intron | 30.0% | |
| ATTGAAAATTGTTGAGGGAA+AGG | - | chr4_1:54506783-54506802 | Msa0556350:intron | 30.0% | |
| !! | TTATTCTGCTTTTACTGTTC+AGG | - | chr4_1:54506877-54506896 | Msa0556350:intron | 30.0% |
| ATCAAGCTAAGCTAAATCAT+GGG | + | chr4_1:54507345-54507364 | None:intergenic | 30.0% | |
| TATCAAGCTAAGCTAAATCA+TGG | + | chr4_1:54507346-54507365 | None:intergenic | 30.0% | |
| ! | AAAATCATAAGCTTCCCTTT+TGG | + | chr4_1:54507399-54507418 | None:intergenic | 30.0% |
| ! | AAGCTTATGATTTTTGTGCT+TGG | - | chr4_1:54507405-54507424 | Msa0556350:intron | 30.0% |
| AGCCACTATGATAAAAGTTT+AGG | + | chr4_1:54508019-54508038 | None:intergenic | 30.0% | |
| ! | CTTTTATCATAGTGGCTTAT+TGG | - | chr4_1:54508022-54508041 | Msa0556350:intron | 30.0% |
| ! | AGTAAAGGAAAGGATTTTGA+AGG | - | chr4_1:54508080-54508099 | Msa0556350:intron | 30.0% |
| ! | GTAAAGGAAAGGATTTTGAA+GGG | - | chr4_1:54508081-54508100 | Msa0556350:intron | 30.0% |
| !! | CAAGTATTTCAAGTTCACTA+TGG | - | chr4_1:54508134-54508153 | Msa0556350:intron | 30.0% |
| AGCCACTATGATAAAAGTTT+AGG | + | chr4_1:54508019-54508038 | None:intergenic | 30.0% | |
| ! | CTTTTATCATAGTGGCTTAT+TGG | - | chr4_1:54508022-54508041 | Msa0556350:intron | 30.0% |
| ! | AGTAAAGGAAAGGATTTTGA+AGG | - | chr4_1:54508080-54508099 | Msa0556350:intron | 30.0% |
| ! | GTAAAGGAAAGGATTTTGAA+GGG | - | chr4_1:54508081-54508100 | Msa0556350:intron | 30.0% |
| AACAAATTTCTCTACACCCT+TGG | - | chr4_1:54506558-54506577 | Msa0556350:intron | 35.0% | |
| !! | GCCTTTAAGATCATATAACG+AGG | - | chr4_1:54506675-54506694 | Msa0556350:intron | 35.0% |
| ! | CTCAACAATTTTCAATGTGG+TGG | + | chr4_1:54506779-54506798 | None:intergenic | 35.0% |
| CACCACATTGAAAATTGTTG+AGG | - | chr4_1:54506777-54506796 | Msa0556350:intron | 35.0% | |
| ! | TCCCTCAACAATTTTCAATG+TGG | + | chr4_1:54506782-54506801 | None:intergenic | 35.0% |
| TTTATTTGGAAATCTTGGGC+TGG | + | chr4_1:54506850-54506869 | None:intergenic | 35.0% | |
| GTAGGGGATATTTCTTAAAC+AGG | - | chr4_1:54506943-54506962 | Msa0556350:intron | 35.0% | |
| TAAACTGCTCGAATGAGATA+GGG | + | chr4_1:54507051-54507070 | None:intergenic | 35.0% | |
| TTAAACTGCTCGAATGAGAT+AGG | + | chr4_1:54507052-54507071 | None:intergenic | 35.0% | |
| AAGAGTTTGAGCTACATTCT+AGG | - | chr4_1:54507070-54507089 | Msa0556350:intron | 35.0% | |
| AGAGTTTGAGCTACATTCTA+GGG | - | chr4_1:54507071-54507090 | Msa0556350:intron | 35.0% | |
| CTTCCTATAGAATTTGCATG+TGG | + | chr4_1:54507097-54507116 | None:intergenic | 35.0% | |
| ! | GGAATCTGAGATTCAAATAG+AGG | - | chr4_1:54507259-54507278 | Msa0556350:CDS | 35.0% |
| TCAAGCTAAGCTAAATCATG+GGG | + | chr4_1:54507344-54507363 | None:intergenic | 35.0% | |
| TTTCTCCATGTTTGCCAAAA+GGG | - | chr4_1:54507382-54507401 | Msa0556350:intron | 35.0% | |
| TTGTGCTTGGTTTCTTATTC+AGG | - | chr4_1:54507418-54507437 | Msa0556350:intron | 35.0% | |
| TACAGATGATAACAGTGCTT+GGG | + | chr4_1:54507471-54507490 | None:intergenic | 35.0% | |
| ! | AAATGATTTTCCACATGCCA+AGG | + | chr4_1:54507656-54507675 | None:intergenic | 35.0% |
| ATCCTTTCCTTTACTTCTGT+TGG | + | chr4_1:54508075-54508094 | None:intergenic | 35.0% | |
| !! | AAGGATTTTGAAGGGAAGAA+TGG | - | chr4_1:54508089-54508108 | Msa0556350:intron | 35.0% |
| !!! | GGATTAAGTTTTAAGCCATC+TGG | - | chr4_1:54508110-54508129 | Msa0556350:intron | 35.0% |
| ACTTGAAATACTTGACCAGA+TGG | + | chr4_1:54508128-54508147 | None:intergenic | 35.0% | |
| ATCCTTTCCTTTACTTCTGT+TGG | + | chr4_1:54508075-54508094 | None:intergenic | 35.0% | |
| !! | AAGGATTTTGAAGGGAAGAA+TGG | - | chr4_1:54508089-54508108 | Msa0556350:intron | 35.0% |
| !!! | GGATTAAGTTTTAAGCCATC+TGG | - | chr4_1:54508110-54508129 | Msa0556350:intron | 35.0% |
| AACAAATTTCTCTACACCCT+TGG | - | chr4_1:54506558-54506577 | Msa0556350:intron | 35.0% | |
| !! | GCCTTTAAGATCATATAACG+AGG | - | chr4_1:54506675-54506694 | Msa0556350:intron | 35.0% |
| ! | CTCAACAATTTTCAATGTGG+TGG | + | chr4_1:54506779-54506798 | None:intergenic | 35.0% |
| CACCACATTGAAAATTGTTG+AGG | - | chr4_1:54506777-54506796 | Msa0556350:intron | 35.0% | |
| ! | TCCCTCAACAATTTTCAATG+TGG | + | chr4_1:54506782-54506801 | None:intergenic | 35.0% |
| TTTATTTGGAAATCTTGGGC+TGG | + | chr4_1:54506850-54506869 | None:intergenic | 35.0% | |
| GTAGGGGATATTTCTTAAAC+AGG | - | chr4_1:54506943-54506962 | Msa0556350:intron | 35.0% | |
| TAAACTGCTCGAATGAGATA+GGG | + | chr4_1:54507051-54507070 | None:intergenic | 35.0% | |
| TTAAACTGCTCGAATGAGAT+AGG | + | chr4_1:54507052-54507071 | None:intergenic | 35.0% | |
| AAGAGTTTGAGCTACATTCT+AGG | - | chr4_1:54507070-54507089 | Msa0556350:intron | 35.0% | |
| AGAGTTTGAGCTACATTCTA+GGG | - | chr4_1:54507071-54507090 | Msa0556350:intron | 35.0% | |
| CTTCCTATAGAATTTGCATG+TGG | + | chr4_1:54507097-54507116 | None:intergenic | 35.0% | |
| ! | GGAATCTGAGATTCAAATAG+AGG | - | chr4_1:54507259-54507278 | Msa0556350:CDS | 35.0% |
| TCAAGCTAAGCTAAATCATG+GGG | + | chr4_1:54507344-54507363 | None:intergenic | 35.0% | |
| TTTCTCCATGTTTGCCAAAA+GGG | - | chr4_1:54507382-54507401 | Msa0556350:intron | 35.0% | |
| TTGTGCTTGGTTTCTTATTC+AGG | - | chr4_1:54507418-54507437 | Msa0556350:intron | 35.0% | |
| TACAGATGATAACAGTGCTT+GGG | + | chr4_1:54507471-54507490 | None:intergenic | 35.0% | |
| ! | AAATGATTTTCCACATGCCA+AGG | + | chr4_1:54507656-54507675 | None:intergenic | 35.0% |
| ATCCTTTCCTTTACTTCTGT+TGG | + | chr4_1:54508075-54508094 | None:intergenic | 35.0% | |
| !! | AAGGATTTTGAAGGGAAGAA+TGG | - | chr4_1:54508089-54508108 | Msa0556350:intron | 35.0% |
| !!! | GGATTAAGTTTTAAGCCATC+TGG | - | chr4_1:54508110-54508129 | Msa0556350:intron | 35.0% |
| ACTTGAAATACTTGACCAGA+TGG | + | chr4_1:54508128-54508147 | None:intergenic | 35.0% | |
| ATCCTTTCCTTTACTTCTGT+TGG | + | chr4_1:54508075-54508094 | None:intergenic | 35.0% | |
| !! | AAGGATTTTGAAGGGAAGAA+TGG | - | chr4_1:54508089-54508108 | Msa0556350:intron | 35.0% |
| !!! | GGATTAAGTTTTAAGCCATC+TGG | - | chr4_1:54508110-54508129 | Msa0556350:intron | 35.0% |
| ATCGATGTTTAAGCCTGACA+TGG | - | chr4_1:54506348-54506367 | Msa0556350:intron | 40.0% | |
| !! | ACTTTAGGACAAACCATGTC+AGG | + | chr4_1:54506364-54506383 | None:intergenic | 40.0% |
| TGAGGTGGTTTCCAAGAAAT+CGG | - | chr4_1:54506613-54506632 | Msa0556350:CDS | 40.0% | |
| AAGATCATATAACGAGGAGC+TGG | - | chr4_1:54506681-54506700 | Msa0556350:intron | 40.0% | |
| ACTACAAAGCTCAACCACTA+AGG | - | chr4_1:54507004-54507023 | Msa0556350:intron | 40.0% | |
| AGCAACAAGCAGAAAAGATC+AGG | - | chr4_1:54507143-54507162 | Msa0556350:intron | 40.0% | |
| GCAACAAGCAGAAAAGATCA+GGG | - | chr4_1:54507144-54507163 | Msa0556350:intron | 40.0% | |
| TGGAAGTGAGACGTTCTTTA+GGG | - | chr4_1:54507231-54507250 | Msa0556350:CDS | 40.0% | |
| !! | TGAGACGTTCTTTAGGGTAA+AGG | - | chr4_1:54507237-54507256 | Msa0556350:CDS | 40.0% |
| !! | GAGACGTTCTTTAGGGTAAA+GGG | - | chr4_1:54507238-54507257 | Msa0556350:CDS | 40.0% |
| CTGAAGAAACAACCGCAAAA+TGG | + | chr4_1:54507296-54507315 | None:intergenic | 40.0% | |
| GTTTCTCCATGTTTGCCAAA+AGG | - | chr4_1:54507381-54507400 | Msa0556350:intron | 40.0% | |
| GTTTCTTATTCAGGAAGCTG+AGG | - | chr4_1:54507427-54507446 | Msa0556350:intron | 40.0% | |
| CTACAGATGATAACAGTGCT+TGG | + | chr4_1:54507472-54507491 | None:intergenic | 40.0% | |
| AGTTCATCTTACAAGCCACT+AGG | - | chr4_1:54507612-54507631 | Msa0556350:intron | 40.0% | |
| GCTGCAGCAAACAAAATTTG+AGG | + | chr4_1:54508049-54508068 | None:intergenic | 40.0% | |
| CTCCAACAGAAGTAAAGGAA+AGG | - | chr4_1:54508070-54508089 | Msa0556350:intron | 40.0% | |
| GCTGCAGCAAACAAAATTTG+AGG | + | chr4_1:54508049-54508068 | None:intergenic | 40.0% | |
| CTCCAACAGAAGTAAAGGAA+AGG | - | chr4_1:54508070-54508089 | Msa0556350:intron | 40.0% | |
| ATCGATGTTTAAGCCTGACA+TGG | - | chr4_1:54506348-54506367 | Msa0556350:intron | 40.0% | |
| !! | ACTTTAGGACAAACCATGTC+AGG | + | chr4_1:54506364-54506383 | None:intergenic | 40.0% |
| TGAGGTGGTTTCCAAGAAAT+CGG | - | chr4_1:54506613-54506632 | Msa0556350:CDS | 40.0% | |
| AAGATCATATAACGAGGAGC+TGG | - | chr4_1:54506681-54506700 | Msa0556350:intron | 40.0% | |
| ACTACAAAGCTCAACCACTA+AGG | - | chr4_1:54507004-54507023 | Msa0556350:intron | 40.0% | |
| AGCAACAAGCAGAAAAGATC+AGG | - | chr4_1:54507143-54507162 | Msa0556350:intron | 40.0% | |
| GCAACAAGCAGAAAAGATCA+GGG | - | chr4_1:54507144-54507163 | Msa0556350:intron | 40.0% | |
| TGGAAGTGAGACGTTCTTTA+GGG | - | chr4_1:54507231-54507250 | Msa0556350:CDS | 40.0% | |
| !! | TGAGACGTTCTTTAGGGTAA+AGG | - | chr4_1:54507237-54507256 | Msa0556350:CDS | 40.0% |
| !! | GAGACGTTCTTTAGGGTAAA+GGG | - | chr4_1:54507238-54507257 | Msa0556350:CDS | 40.0% |
| CTGAAGAAACAACCGCAAAA+TGG | + | chr4_1:54507296-54507315 | None:intergenic | 40.0% | |
| GTTTCTCCATGTTTGCCAAA+AGG | - | chr4_1:54507381-54507400 | Msa0556350:intron | 40.0% | |
| GTTTCTTATTCAGGAAGCTG+AGG | - | chr4_1:54507427-54507446 | Msa0556350:intron | 40.0% | |
| CTACAGATGATAACAGTGCT+TGG | + | chr4_1:54507472-54507491 | None:intergenic | 40.0% | |
| AGTTCATCTTACAAGCCACT+AGG | - | chr4_1:54507612-54507631 | Msa0556350:intron | 40.0% | |
| GCTGCAGCAAACAAAATTTG+AGG | + | chr4_1:54508049-54508068 | None:intergenic | 40.0% | |
| CTCCAACAGAAGTAAAGGAA+AGG | - | chr4_1:54508070-54508089 | Msa0556350:intron | 40.0% | |
| GCTGCAGCAAACAAAATTTG+AGG | + | chr4_1:54508049-54508068 | None:intergenic | 40.0% | |
| CTCCAACAGAAGTAAAGGAA+AGG | - | chr4_1:54508070-54508089 | Msa0556350:intron | 40.0% | |
| GCAAAAGACTTCGTTGTTGC+TGG | - | chr4_1:54506292-54506311 | Msa0556350:CDS | 45.0% | |
| ACAAGCACCATACAGAGACT+CGG | + | chr4_1:54506326-54506345 | None:intergenic | 45.0% | |
| TCTACACCCTTGGTATCTGT+GGG | - | chr4_1:54506568-54506587 | Msa0556350:intron | 45.0% | |
| ATCAAGCCTTCATCATGAGG+TGG | - | chr4_1:54506598-54506617 | Msa0556350:intron | 45.0% | |
| TGGAAACCACCTCATGATGA+AGG | + | chr4_1:54506607-54506626 | None:intergenic | 45.0% | |
| GAGGTGGTTTCCAAGAAATC+GGG | - | chr4_1:54506614-54506633 | Msa0556350:CDS | 45.0% | |
| AGGTGGTTTCCAAGAAATCG+GGG | - | chr4_1:54506615-54506634 | Msa0556350:CDS | 45.0% | |
| TTCCAAGAAATCGGGGATTC+TGG | - | chr4_1:54506622-54506641 | Msa0556350:CDS | 45.0% | |
| ATCCAGAATCCCCGATTTCT+TGG | + | chr4_1:54506627-54506646 | None:intergenic | 45.0% | |
| TATAACGAGGAGCTGGTTGT+AGG | - | chr4_1:54506688-54506707 | Msa0556350:intron | 45.0% | |
| !! | ATTGTTGAGGGAAAGGCACT+TGG | - | chr4_1:54506790-54506809 | Msa0556350:intron | 45.0% |
| GGAAATTAAACCAGCACCAC+AGG | + | chr4_1:54506829-54506848 | None:intergenic | 45.0% | |
| !! | CTGCTTTTACTGTTCAGGCT+TGG | - | chr4_1:54506882-54506901 | Msa0556350:intron | 45.0% |
| CTGCATCAAATCCTCATGCT+TGG | + | chr4_1:54506921-54506940 | None:intergenic | 45.0% | |
| CAAGCATGAGGATTTGATGC+AGG | - | chr4_1:54506919-54506938 | Msa0556350:intron | 45.0% | |
| TGAGGATTTGATGCAGGTGT+AGG | - | chr4_1:54506925-54506944 | Msa0556350:intron | 45.0% | |
| GAGGATTTGATGCAGGTGTA+GGG | - | chr4_1:54506926-54506945 | Msa0556350:intron | 45.0% | |
| AGGATTTGATGCAGGTGTAG+GGG | - | chr4_1:54506927-54506946 | Msa0556350:intron | 45.0% | |
| GGGCCACATGCAAATTCTAT+AGG | - | chr4_1:54507091-54507110 | Msa0556350:intron | 45.0% | |
| AAGATCGACGATTGTACTGC+TGG | - | chr4_1:54507114-54507133 | Msa0556350:intron | 45.0% | |
| AGATCGACGATTGTACTGCT+GGG | - | chr4_1:54507115-54507134 | Msa0556350:intron | 45.0% | |
| !! | TCTCACTTCCACTCTGAAGT+CGG | + | chr4_1:54507222-54507241 | None:intergenic | 45.0% |
| GTGGAAGTGAGACGTTCTTT+AGG | - | chr4_1:54507230-54507249 | Msa0556350:CDS | 45.0% | |
| ! | GAAGCCATTCGACCATTTTG+CGG | - | chr4_1:54507281-54507300 | Msa0556350:CDS | 45.0% |
| ACAACCGCAAAATGGTCGAA+TGG | + | chr4_1:54507288-54507307 | None:intergenic | 45.0% | |
| ! | AGCTTCCCTTTTGGCAAACA+TGG | + | chr4_1:54507390-54507409 | None:intergenic | 45.0% |
| TGATAACAGTGCTTGGGAGA+TGG | + | chr4_1:54507465-54507484 | None:intergenic | 45.0% | |
| CATCTTACAAGCCACTAGGT+TGG | - | chr4_1:54507616-54507635 | Msa0556350:intron | 45.0% | |
| AAGTCGTTTGTCCAACCTAG+TGG | + | chr4_1:54507630-54507649 | None:intergenic | 45.0% | |
| ! | TGGACAAACGACTTTTGCCT+TGG | - | chr4_1:54507636-54507655 | Msa0556350:intron | 45.0% |
| CAGCACTCCAACAGAAGTAA+AGG | - | chr4_1:54508065-54508084 | Msa0556350:intron | 45.0% | |
| CAGCACTCCAACAGAAGTAA+AGG | - | chr4_1:54508065-54508084 | Msa0556350:intron | 45.0% | |
| GCAAAAGACTTCGTTGTTGC+TGG | - | chr4_1:54506292-54506311 | Msa0556350:CDS | 45.0% | |
| ACAAGCACCATACAGAGACT+CGG | + | chr4_1:54506326-54506345 | None:intergenic | 45.0% | |
| TCTACACCCTTGGTATCTGT+GGG | - | chr4_1:54506568-54506587 | Msa0556350:intron | 45.0% | |
| ATCAAGCCTTCATCATGAGG+TGG | - | chr4_1:54506598-54506617 | Msa0556350:intron | 45.0% | |
| TGGAAACCACCTCATGATGA+AGG | + | chr4_1:54506607-54506626 | None:intergenic | 45.0% | |
| GAGGTGGTTTCCAAGAAATC+GGG | - | chr4_1:54506614-54506633 | Msa0556350:CDS | 45.0% | |
| AGGTGGTTTCCAAGAAATCG+GGG | - | chr4_1:54506615-54506634 | Msa0556350:CDS | 45.0% | |
| TTCCAAGAAATCGGGGATTC+TGG | - | chr4_1:54506622-54506641 | Msa0556350:CDS | 45.0% | |
| ATCCAGAATCCCCGATTTCT+TGG | + | chr4_1:54506627-54506646 | None:intergenic | 45.0% | |
| TATAACGAGGAGCTGGTTGT+AGG | - | chr4_1:54506688-54506707 | Msa0556350:intron | 45.0% | |
| !! | ATTGTTGAGGGAAAGGCACT+TGG | - | chr4_1:54506790-54506809 | Msa0556350:intron | 45.0% |
| GGAAATTAAACCAGCACCAC+AGG | + | chr4_1:54506829-54506848 | None:intergenic | 45.0% | |
| !! | CTGCTTTTACTGTTCAGGCT+TGG | - | chr4_1:54506882-54506901 | Msa0556350:intron | 45.0% |
| CTGCATCAAATCCTCATGCT+TGG | + | chr4_1:54506921-54506940 | None:intergenic | 45.0% | |
| CAAGCATGAGGATTTGATGC+AGG | - | chr4_1:54506919-54506938 | Msa0556350:intron | 45.0% | |
| TGAGGATTTGATGCAGGTGT+AGG | - | chr4_1:54506925-54506944 | Msa0556350:intron | 45.0% | |
| GAGGATTTGATGCAGGTGTA+GGG | - | chr4_1:54506926-54506945 | Msa0556350:intron | 45.0% | |
| AGGATTTGATGCAGGTGTAG+GGG | - | chr4_1:54506927-54506946 | Msa0556350:intron | 45.0% | |
| GGGCCACATGCAAATTCTAT+AGG | - | chr4_1:54507091-54507110 | Msa0556350:intron | 45.0% | |
| AAGATCGACGATTGTACTGC+TGG | - | chr4_1:54507114-54507133 | Msa0556350:intron | 45.0% | |
| AGATCGACGATTGTACTGCT+GGG | - | chr4_1:54507115-54507134 | Msa0556350:intron | 45.0% | |
| !! | TCTCACTTCCACTCTGAAGT+CGG | + | chr4_1:54507222-54507241 | None:intergenic | 45.0% |
| GTGGAAGTGAGACGTTCTTT+AGG | - | chr4_1:54507230-54507249 | Msa0556350:CDS | 45.0% | |
| ! | GAAGCCATTCGACCATTTTG+CGG | - | chr4_1:54507281-54507300 | Msa0556350:CDS | 45.0% |
| ACAACCGCAAAATGGTCGAA+TGG | + | chr4_1:54507288-54507307 | None:intergenic | 45.0% | |
| ! | AGCTTCCCTTTTGGCAAACA+TGG | + | chr4_1:54507390-54507409 | None:intergenic | 45.0% |
| TGATAACAGTGCTTGGGAGA+TGG | + | chr4_1:54507465-54507484 | None:intergenic | 45.0% | |
| CATCTTACAAGCCACTAGGT+TGG | - | chr4_1:54507616-54507635 | Msa0556350:intron | 45.0% | |
| AAGTCGTTTGTCCAACCTAG+TGG | + | chr4_1:54507630-54507649 | None:intergenic | 45.0% | |
| ! | TGGACAAACGACTTTTGCCT+TGG | - | chr4_1:54507636-54507655 | Msa0556350:intron | 45.0% |
| CAGCACTCCAACAGAAGTAA+AGG | - | chr4_1:54508065-54508084 | Msa0556350:intron | 45.0% | |
| CAGCACTCCAACAGAAGTAA+AGG | - | chr4_1:54508065-54508084 | Msa0556350:intron | 45.0% | |
| CTCTACACCCTTGGTATCTG+TGG | - | chr4_1:54506567-54506586 | Msa0556350:intron | 50.0% | |
| CCTTCACCCACAGATACCAA+GGG | + | chr4_1:54506577-54506596 | None:intergenic | 50.0% | |
| GGCATCAAGCCTTCATCATG+AGG | - | chr4_1:54506595-54506614 | Msa0556350:intron | 50.0% | |
| !! | GAGGGAAAGGCACTTGGTTA+TGG | - | chr4_1:54506796-54506815 | Msa0556350:intron | 50.0% |
| ! | GAAGAGCACACTTCGTTCCA+GGG | - | chr4_1:54506965-54506984 | Msa0556350:intron | 50.0% |
| CTTCGTTCCAGGGCATATCT+CGG | - | chr4_1:54506975-54506994 | Msa0556350:intron | 50.0% | |
| TGCAATGTCCGACTTCAGAG+TGG | - | chr4_1:54507211-54507230 | Msa0556350:intron | 50.0% | |
| GTAGACCGTGACTGTCTTAG+TGG | - | chr4_1:54507488-54507507 | Msa0556350:intron | 50.0% | |
| ! | ACGACTTTTGCCTTGGCATG+TGG | - | chr4_1:54507643-54507662 | Msa0556350:intron | 50.0% |
| CTCTACACCCTTGGTATCTG+TGG | - | chr4_1:54506567-54506586 | Msa0556350:intron | 50.0% | |
| CCTTCACCCACAGATACCAA+GGG | + | chr4_1:54506577-54506596 | None:intergenic | 50.0% | |
| GGCATCAAGCCTTCATCATG+AGG | - | chr4_1:54506595-54506614 | Msa0556350:intron | 50.0% | |
| !! | GAGGGAAAGGCACTTGGTTA+TGG | - | chr4_1:54506796-54506815 | Msa0556350:intron | 50.0% |
| ! | GAAGAGCACACTTCGTTCCA+GGG | - | chr4_1:54506965-54506984 | Msa0556350:intron | 50.0% |
| CTTCGTTCCAGGGCATATCT+CGG | - | chr4_1:54506975-54506994 | Msa0556350:intron | 50.0% | |
| TGCAATGTCCGACTTCAGAG+TGG | - | chr4_1:54507211-54507230 | Msa0556350:intron | 50.0% | |
| GTAGACCGTGACTGTCTTAG+TGG | - | chr4_1:54507488-54507507 | Msa0556350:intron | 50.0% | |
| ! | ACGACTTTTGCCTTGGCATG+TGG | - | chr4_1:54507643-54507662 | Msa0556350:intron | 50.0% |
| ACTGCGTCCGAGTCTCTGTA+TGG | - | chr4_1:54506316-54506335 | Msa0556350:CDS | 55.0% | |
| CCCTTGGTATCTGTGGGTGA+AGG | - | chr4_1:54506574-54506593 | Msa0556350:intron | 55.0% | |
| GCCTTCACCCACAGATACCA+AGG | + | chr4_1:54506578-54506597 | None:intergenic | 55.0% | |
| ! | TTCCATCCATGTGGTGGGGT+GGG | + | chr4_1:54506750-54506769 | None:intergenic | 55.0% |
| ACCCCACCACATGGATGGAA+GGG | - | chr4_1:54506750-54506769 | Msa0556350:intron | 55.0% | |
| ACCCCTTCCATCCATGTGGT+GGG | + | chr4_1:54506755-54506774 | None:intergenic | 55.0% | |
| AACCCCTTCCATCCATGTGG+TGG | + | chr4_1:54506756-54506775 | None:intergenic | 55.0% | |
| TGGAACCCCTTCCATCCATG+TGG | + | chr4_1:54506759-54506778 | None:intergenic | 55.0% | |
| TGGTTATGGACCTGCACCTG+TGG | - | chr4_1:54506810-54506829 | Msa0556350:intron | 55.0% | |
| TAAACCAGCACCACAGGTGC+AGG | + | chr4_1:54506823-54506842 | None:intergenic | 55.0% | |
| GTTCAGGCTTGGACACAAGC+TGG | - | chr4_1:54506893-54506912 | Msa0556350:intron | 55.0% | |
| ! | ACAAGCTGGCTCCAAGCATG+AGG | - | chr4_1:54506907-54506926 | Msa0556350:intron | 55.0% |
| ! | GGAAGAGCACACTTCGTTCC+AGG | - | chr4_1:54506964-54506983 | Msa0556350:intron | 55.0% |
| GTTCCAGGGCATATCTCGGT+GGG | - | chr4_1:54506979-54506998 | Msa0556350:intron | 55.0% | |
| TTACCCACCGAGATATGCCC+TGG | + | chr4_1:54506985-54507004 | None:intergenic | 55.0% | |
| ! | CAGCACTTGCTGGTCCTTAG+TGG | + | chr4_1:54507021-54507040 | None:intergenic | 55.0% |
| ACCGTGACTGTCTTAGTGGC+TGG | - | chr4_1:54507492-54507511 | Msa0556350:intron | 55.0% | |
| CCCAGCCACTAAGACAGTCA+CGG | + | chr4_1:54507496-54507515 | None:intergenic | 55.0% | |
| CCGTGACTGTCTTAGTGGCT+GGG | - | chr4_1:54507493-54507512 | Msa0556350:intron | 55.0% | |
| CGTGACTGTCTTAGTGGCTG+GGG | - | chr4_1:54507494-54507513 | Msa0556350:intron | 55.0% | |
| ACTGCGTCCGAGTCTCTGTA+TGG | - | chr4_1:54506316-54506335 | Msa0556350:CDS | 55.0% | |
| CCCTTGGTATCTGTGGGTGA+AGG | - | chr4_1:54506574-54506593 | Msa0556350:intron | 55.0% | |
| GCCTTCACCCACAGATACCA+AGG | + | chr4_1:54506578-54506597 | None:intergenic | 55.0% | |
| ! | TTCCATCCATGTGGTGGGGT+GGG | + | chr4_1:54506750-54506769 | None:intergenic | 55.0% |
| ACCCCACCACATGGATGGAA+GGG | - | chr4_1:54506750-54506769 | Msa0556350:intron | 55.0% | |
| ACCCCTTCCATCCATGTGGT+GGG | + | chr4_1:54506755-54506774 | None:intergenic | 55.0% | |
| AACCCCTTCCATCCATGTGG+TGG | + | chr4_1:54506756-54506775 | None:intergenic | 55.0% | |
| TGGAACCCCTTCCATCCATG+TGG | + | chr4_1:54506759-54506778 | None:intergenic | 55.0% | |
| TGGTTATGGACCTGCACCTG+TGG | - | chr4_1:54506810-54506829 | Msa0556350:intron | 55.0% | |
| TAAACCAGCACCACAGGTGC+AGG | + | chr4_1:54506823-54506842 | None:intergenic | 55.0% | |
| GTTCAGGCTTGGACACAAGC+TGG | - | chr4_1:54506893-54506912 | Msa0556350:intron | 55.0% | |
| ! | ACAAGCTGGCTCCAAGCATG+AGG | - | chr4_1:54506907-54506926 | Msa0556350:intron | 55.0% |
| ! | GGAAGAGCACACTTCGTTCC+AGG | - | chr4_1:54506964-54506983 | Msa0556350:intron | 55.0% |
| GTTCCAGGGCATATCTCGGT+GGG | - | chr4_1:54506979-54506998 | Msa0556350:intron | 55.0% | |
| TTACCCACCGAGATATGCCC+TGG | + | chr4_1:54506985-54507004 | None:intergenic | 55.0% | |
| ! | CAGCACTTGCTGGTCCTTAG+TGG | + | chr4_1:54507021-54507040 | None:intergenic | 55.0% |
| ACCGTGACTGTCTTAGTGGC+TGG | - | chr4_1:54507492-54507511 | Msa0556350:intron | 55.0% | |
| CCCAGCCACTAAGACAGTCA+CGG | + | chr4_1:54507496-54507515 | None:intergenic | 55.0% | |
| CCGTGACTGTCTTAGTGGCT+GGG | - | chr4_1:54507493-54507512 | Msa0556350:intron | 55.0% | |
| CGTGACTGTCTTAGTGGCTG+GGG | - | chr4_1:54507494-54507513 | Msa0556350:intron | 55.0% | |
| CGAGGAGCTGGTTGTAGGAG+AGG | - | chr4_1:54506693-54506712 | Msa0556350:intron | 60.0% | |
| ! | TCCATCCATGTGGTGGGGTG+GGG | + | chr4_1:54506749-54506768 | None:intergenic | 60.0% |
| ! | CTTCCATCCATGTGGTGGGG+TGG | + | chr4_1:54506751-54506770 | None:intergenic | 60.0% |
| CACCCCACCACATGGATGGA+AGG | - | chr4_1:54506749-54506768 | Msa0556350:intron | 60.0% | |
| CCCCTTCCATCCATGTGGTG+GGG | + | chr4_1:54506754-54506773 | None:intergenic | 60.0% | |
| CCCCACCACATGGATGGAAG+GGG | - | chr4_1:54506751-54506770 | Msa0556350:intron | 60.0% | |
| CGTTCCAGGGCATATCTCGG+TGG | - | chr4_1:54506978-54506997 | Msa0556350:intron | 60.0% | |
| GGGCAGAACTCAGCACTTGC+TGG | + | chr4_1:54507031-54507050 | None:intergenic | 60.0% | |
| GACTGTCTTAGTGGCTGGGG+TGG | - | chr4_1:54507497-54507516 | Msa0556350:intron | 60.0% | |
| CGAGGAGCTGGTTGTAGGAG+AGG | - | chr4_1:54506693-54506712 | Msa0556350:intron | 60.0% | |
| ! | TCCATCCATGTGGTGGGGTG+GGG | + | chr4_1:54506749-54506768 | None:intergenic | 60.0% |
| ! | CTTCCATCCATGTGGTGGGG+TGG | + | chr4_1:54506751-54506770 | None:intergenic | 60.0% |
| CACCCCACCACATGGATGGA+AGG | - | chr4_1:54506749-54506768 | Msa0556350:intron | 60.0% | |
| CCCCTTCCATCCATGTGGTG+GGG | + | chr4_1:54506754-54506773 | None:intergenic | 60.0% | |
| CCCCACCACATGGATGGAAG+GGG | - | chr4_1:54506751-54506770 | Msa0556350:intron | 60.0% | |
| CGTTCCAGGGCATATCTCGG+TGG | - | chr4_1:54506978-54506997 | Msa0556350:intron | 60.0% | |
| GGGCAGAACTCAGCACTTGC+TGG | + | chr4_1:54507031-54507050 | None:intergenic | 60.0% | |
| GACTGTCTTAGTGGCTGGGG+TGG | - | chr4_1:54507497-54507516 | Msa0556350:intron | 60.0% | |
| ! | TCCATGTGGTGGGGTGGGGT+GGG | + | chr4_1:54506745-54506764 | None:intergenic | 65.0% |
| ! | ATCCATGTGGTGGGGTGGGG+TGG | + | chr4_1:54506746-54506765 | None:intergenic | 65.0% |
| ACCCCACCCCACCACATGGA+TGG | - | chr4_1:54506745-54506764 | Msa0556350:intron | 65.0% | |
| TGGACCTGCACCTGTGGTGC+TGG | - | chr4_1:54506816-54506835 | Msa0556350:intron | 65.0% | |
| ! | TCCATGTGGTGGGGTGGGGT+GGG | + | chr4_1:54506745-54506764 | None:intergenic | 65.0% |
| ! | ATCCATGTGGTGGGGTGGGG+TGG | + | chr4_1:54506746-54506765 | None:intergenic | 65.0% |
| ACCCCACCCCACCACATGGA+TGG | - | chr4_1:54506745-54506764 | Msa0556350:intron | 65.0% | |
| TGGACCTGCACCTGTGGTGC+TGG | - | chr4_1:54506816-54506835 | Msa0556350:intron | 65.0% | |
| ! | CCATGTGGTGGGGTGGGGTG+GGG | + | chr4_1:54506744-54506763 | None:intergenic | 70.0% |
| ! | CCATGTGGTGGGGTGGGGTG+GGG | + | chr4_1:54506744-54506763 | None:intergenic | 70.0% |
| GTGGGGTGGAGTGGGGTGGG+GGG | + | chr4_1:54506727-54506746 | None:intergenic | 75.0% | |
| GGTGGGGTGGAGTGGGGTGG+GGG | + | chr4_1:54506728-54506747 | None:intergenic | 75.0% | |
| GGGTGGGGTGGAGTGGGGTG+GGG | + | chr4_1:54506729-54506748 | None:intergenic | 75.0% | |
| GGGGTGGGGTGGAGTGGGGT+GGG | + | chr4_1:54506730-54506749 | None:intergenic | 75.0% | |
| TGGGGTGGGGTGGAGTGGGG+TGG | + | chr4_1:54506731-54506750 | None:intergenic | 75.0% | |
| GGGTGGGGTGGGGTGGAGTG+GGG | + | chr4_1:54506734-54506753 | None:intergenic | 75.0% | |
| GGGGTGGGGTGGGGTGGAGT+GGG | + | chr4_1:54506735-54506754 | None:intergenic | 75.0% | |
| TGGGGTGGGGTGGGGTGGAG+TGG | + | chr4_1:54506736-54506755 | None:intergenic | 75.0% | |
| ! | TGTGGTGGGGTGGGGTGGGG+TGG | + | chr4_1:54506741-54506760 | None:intergenic | 75.0% |
| CCCCACCCCACCCCACCACA+TGG | - | chr4_1:54506741-54506760 | Msa0556350:intron | 75.0% | |
| GTGGGGTGGAGTGGGGTGGG+GGG | + | chr4_1:54506727-54506746 | None:intergenic | 75.0% | |
| GGTGGGGTGGAGTGGGGTGG+GGG | + | chr4_1:54506728-54506747 | None:intergenic | 75.0% | |
| GGGTGGGGTGGAGTGGGGTG+GGG | + | chr4_1:54506729-54506748 | None:intergenic | 75.0% | |
| GGGGTGGGGTGGAGTGGGGT+GGG | + | chr4_1:54506730-54506749 | None:intergenic | 75.0% | |
| TGGGGTGGGGTGGAGTGGGG+TGG | + | chr4_1:54506731-54506750 | None:intergenic | 75.0% | |
| GGGTGGGGTGGGGTGGAGTG+GGG | + | chr4_1:54506734-54506753 | None:intergenic | 75.0% | |
| GGGGTGGGGTGGGGTGGAGT+GGG | + | chr4_1:54506735-54506754 | None:intergenic | 75.0% | |
| TGGGGTGGGGTGGGGTGGAG+TGG | + | chr4_1:54506736-54506755 | None:intergenic | 75.0% | |
| ! | TGTGGTGGGGTGGGGTGGGG+TGG | + | chr4_1:54506741-54506760 | None:intergenic | 75.0% |
| CCCCACCCCACCCCACCACA+TGG | - | chr4_1:54506741-54506760 | Msa0556350:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 54506285 | 54508459 | 54506285 | ID=Msa0556350;Name=Msa0556350 |
| chr4_1 | mRNA | 54506285 | 54508459 | 54506285 | ID=Msa0556350-mRNA-1;Parent=Msa0556350;Name=Msa0556350-mRNA-1;_AED=0.31;_eAED=0.31;_QI=67|0.33|0|1|0.66|0.5|4|0|79 |
| chr4_1 | exon | 54508375 | 54508459 | 54508375 | ID=Msa0556350-mRNA-1:exon:16087;Parent=Msa0556350-mRNA-1 |
| chr4_1 | exon | 54507221 | 54507304 | 54507221 | ID=Msa0556350-mRNA-1:exon:16086;Parent=Msa0556350-mRNA-1 |
| chr4_1 | exon | 54506608 | 54506676 | 54506608 | ID=Msa0556350-mRNA-1:exon:16085;Parent=Msa0556350-mRNA-1 |
| chr4_1 | exon | 54506285 | 54506350 | 54506285 | ID=Msa0556350-mRNA-1:exon:16084;Parent=Msa0556350-mRNA-1 |
| chr4_1 | five_prime_UTR | 54508393 | 54508459 | 54508393 | ID=Msa0556350-mRNA-1:five_prime_utr;Parent=Msa0556350-mRNA-1 |
| chr4_1 | CDS | 54508375 | 54508392 | 54508375 | ID=Msa0556350-mRNA-1:cds;Parent=Msa0556350-mRNA-1 |
| chr4_1 | CDS | 54507221 | 54507304 | 54507221 | ID=Msa0556350-mRNA-1:cds;Parent=Msa0556350-mRNA-1 |
| chr4_1 | CDS | 54506608 | 54506676 | 54506608 | ID=Msa0556350-mRNA-1:cds;Parent=Msa0556350-mRNA-1 |
| chr4_1 | CDS | 54506285 | 54506350 | 54506285 | ID=Msa0556350-mRNA-1:cds;Parent=Msa0556350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
