AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0384880

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0384880 MtrunA17_Chr3g0142141 100.000 262 0 0 1 262 1 262 0.0 551
Msa0384880 MtrunA17_Chr6g0462101 57.447 188 77 3 70 255 1 187 4.38e-76 229
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0384880 AT1G75510.1 63.813 257 74 4 15 258 6 256 1.48e-115 332
Msa0384880 AT3G52270.1 52.569 253 104 5 16 258 23 269 8.77e-91 270
Msa0384880 AT3G52270.2 47.945 146 63 3 16 151 23 165 2.58e-39 136

Find 79 sgRNAs with CRISPR-Local

Find 406 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCGAGAATTCAGTTTCTTTA+TGG 0.136992 3_1:-88306809 Msa0384880:three_prime_UTR
CAAAATAAATACCTTAAAAT+TGG 0.220511 3_1:+88307594 None:intergenic
TCGACAGATTTCTTGTATTC+AGG 0.238269 3_1:+88306908 None:intergenic
GAACAAAACATCTCTATCTA+TGG 0.258008 3_1:+88306623 None:intergenic
CATGAAAACATGGATGATTA+TGG 0.267501 3_1:-88307839 Msa0384880:CDS
CAGCTCTCCCCGATCTCTTC+TGG 0.310704 3_1:+88307224 None:intergenic
TATTTGAAAGACAGCCTAAC+TGG 0.312463 3_1:-88307182 Msa0384880:CDS
ACTTCACTCTGAAGAATGTT+TGG 0.329366 3_1:-88306710 Msa0384880:three_prime_UTR
TAAACTAGAAGCGTTAAAAT+AGG 0.341414 3_1:-88306447 Msa0384880:three_prime_UTR
TTTGTATCAGTTTGTTTGAC+TGG 0.345873 3_1:+88307252 None:intergenic
CTCTTGAACAAGTTGCTTCA+AGG 0.372812 3_1:+88307158 None:intergenic
AGACGATCCTGCTCATCTTC+AGG 0.374075 3_1:-88312559 Msa0384880:intron
AGATGAGCAGGATCGTCTTC+AGG 0.397793 3_1:+88312564 None:intergenic
GAAACTAAGCCAACCATTCC+AGG 0.403360 3_1:+88307619 None:intergenic
TAGAAGCGTTAAAATAGGTT+GGG 0.408303 3_1:-88306442 Msa0384880:three_prime_UTR
CATGATTTGGCAACAGCAAC+AGG 0.419759 3_1:+88312648 None:intergenic
CAGAAGAGATCGGGGAGAGC+TGG 0.423650 3_1:-88307223 Msa0384880:CDS
CAGCTCATAAGTTCCTTGAT+TGG 0.425122 3_1:+88306934 None:intergenic
TACATTGAAAGATGTAAGTA+AGG 0.431869 3_1:+88306393 None:intergenic
AAAGAGAACCAGAAGAGATC+GGG 0.447938 3_1:-88307232 Msa0384880:CDS
TGGATGGTTCTGCCATGATT+TGG 0.454021 3_1:+88312635 None:intergenic
AGTTGCTTCAAGGCCCAGTT+AGG 0.465380 3_1:+88307168 None:intergenic
TAGATTTCTTTGTCCTCTCC+CGG 0.471186 3_1:+88307807 None:intergenic
AGACACGAACGAACGAACAT+AGG 0.472862 3_1:-88312802 Msa0384880:five_prime_UTR
CTAGAAGCGTTAAAATAGGT+TGG 0.476132 3_1:-88306443 Msa0384880:three_prime_UTR
TTGGAAAGAGGTTGAGAAGG+TGG 0.479012 3_1:+88312615 None:intergenic
AATAAAAGAGGCGCCAATCA+AGG 0.487240 3_1:-88306947 Msa0384880:CDS
GACACGAACGAACGAACATA+GGG 0.487992 3_1:-88312801 Msa0384880:five_prime_UTR
AAAAGAACCTGAAGATGAGC+AGG 0.488410 3_1:+88312552 None:intergenic
ACGCACATGAGGCCAATGCC+TGG 0.492472 3_1:-88307637 Msa0384880:CDS
CAGTTTACAATGGAGATGTC+TGG 0.505356 3_1:-88311110 Msa0384880:CDS
AAGTAGCGGTGGTTCAAACT+TGG 0.506657 3_1:-88312712 Msa0384880:CDS
GGTGACAAGGTTGCAATGGA+AGG 0.512352 3_1:-88307896 Msa0384880:CDS
CAAAGAGAACCAGAAGAGAT+CGG 0.521004 3_1:-88307233 Msa0384880:CDS
AAATGCAATTATATAAGTAC+AGG 0.524382 3_1:-88306666 Msa0384880:three_prime_UTR
AACAAAACATCTCTATCTAT+GGG 0.524670 3_1:+88306624 None:intergenic
ATGGAAAATTGTGCCGGGAG+AGG 0.527049 3_1:-88307820 Msa0384880:CDS
ATGGAAGATGAAAACAGTTA+CGG 0.527896 3_1:-88312738 Msa0384880:CDS
CTGTTGCTGTTGCCAAATCA+TGG 0.528694 3_1:-88312647 Msa0384880:CDS
GACATCGAAGGCAGAGAGAT+CGG 0.529923 3_1:-88312688 Msa0384880:CDS
AGTCAACGTGTTAAGTAAAG+AGG 0.531916 3_1:-88306782 Msa0384880:three_prime_UTR
AAGCCAACCATTCCAGGCAT+TGG 0.534227 3_1:+88307625 None:intergenic
TTTAGGTGACAAGGTTGCAA+TGG 0.535468 3_1:-88307900 Msa0384880:intron
AGAAGCGTTAAAATAGGTTG+GGG 0.544194 3_1:-88306441 Msa0384880:three_prime_UTR
TTGTGTGTATACAATAAAAG+AGG 0.555378 3_1:-88306959 Msa0384880:CDS
AGATCGATCAAGAATCAAGA+TGG 0.555997 3_1:-88312757 Msa0384880:exon
AAAGAGGTTGAGAAGGTGGA+TGG 0.557605 3_1:+88312619 None:intergenic
TTGGCCTCATGTGCGTTCCA+CGG 0.560162 3_1:+88307644 None:intergenic
ATAATTATGTCAGTTTACAA+TGG 0.563019 3_1:-88311120 Msa0384880:intron
GGATCGTCTTCAGGAAGAAG+AGG 0.578158 3_1:+88312573 None:intergenic
AACAGTTACGGTGGAAGTAG+CGG 0.579345 3_1:-88312726 Msa0384880:CDS
AGGCCAATGCCTGGAATGGT+TGG 0.582117 3_1:-88307628 Msa0384880:CDS
AAGAGATCGGGGAGAGCTGG+AGG 0.583017 3_1:-88307220 Msa0384880:CDS
TCTGTCTTACAATTTACCGC+AGG 0.584122 3_1:-88306530 Msa0384880:three_prime_UTR
ATGATTATGGAAAATTGTGC+CGG 0.587668 3_1:-88307826 Msa0384880:CDS
TAGTCTGTGAAGTGAACACT+AGG 0.599847 3_1:+88306468 None:intergenic
CATGAGGCCAATGCCTGGAA+TGG 0.600183 3_1:-88307632 Msa0384880:CDS
ATTTGAAAGACAGCCTAACT+GGG 0.604731 3_1:-88307181 Msa0384880:CDS
ATGACCGTGGAACGCACATG+AGG 0.615692 3_1:-88307648 Msa0384880:CDS
CGAACATAGGGAGTAGGTGA+AGG 0.617733 3_1:-88312789 Msa0384880:five_prime_UTR
GTGACAAGGTTGCAATGGAA+GGG 0.623466 3_1:-88307895 Msa0384880:CDS
ACTTTGGAAAGAGGTTGAGA+AGG 0.626635 3_1:+88312612 None:intergenic
AACTCTTGTAGGATAAGAAG+AGG 0.627476 3_1:-88307281 Msa0384880:intron
TGATTATGGAAAATTGTGCC+GGG 0.629025 3_1:-88307825 Msa0384880:CDS
GAAGTCAAATAAAATTGACT+AGG 0.632493 3_1:-88312840 Msa0384880:five_prime_UTR
TTCAAACTTGGAGACATCGA+AGG 0.637014 3_1:-88312700 Msa0384880:CDS
AAGAGAACCAGAAGAGATCG+GGG 0.640560 3_1:-88307231 Msa0384880:CDS
GAAGCCACGTCATGAAAACA+TGG 0.640897 3_1:-88307849 Msa0384880:CDS
AAGATTATTGCTGATGACCG+TGG 0.649545 3_1:-88307661 Msa0384880:CDS
ATCTTCTCTGAGACAAGCGA+AGG 0.651215 3_1:-88311020 Msa0384880:intron
TTGTAACGTGAGTACAACGT+TGG 0.659601 3_1:+88306496 None:intergenic
AGTTACGGTGGAAGTAGCGG+TGG 0.667128 3_1:-88312723 Msa0384880:CDS
AACGAACGAACATAGGGAGT+AGG 0.671653 3_1:-88312795 Msa0384880:five_prime_UTR
GAAGATGAAAACAGTTACGG+TGG 0.674861 3_1:-88312735 Msa0384880:CDS
GTCTCAGAGAAGATGCACAT+AGG 0.676365 3_1:+88311029 None:intergenic
TACGAAGTTAGAGAAATACA+AGG 0.687925 3_1:+88306852 None:intergenic
GTTGGATATATATATACCTG+CGG 0.699804 3_1:+88306514 None:intergenic
TCAAGAGACTGATCAACCTG+CGG 0.732985 3_1:-88307142 Msa0384880:intron
CGAAGGCAGAGAGATCGGTG+TGG 0.763887 3_1:-88312683 Msa0384880:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTAAAAAAAAAAAAAAAAA+AGG - chr3_1:88307113-88307132 Msa0384880:intron 0.0%
!! GAATGATTAATTAATTAATT+AGG + chr3_1:88306828-88306847 None:intergenic 10.0%
!! AATTAATTAATTAATCATTC+AGG - chr3_1:88306828-88306847 Msa0384880:three_prime_UTR 10.0%
!!! TATATTTTAGTTTATTTTGA+TGG + chr3_1:88308580-88308599 None:intergenic 10.0%
!! TAAAAATTATTAATTACTTG+GGG + chr3_1:88310331-88310350 None:intergenic 10.0%
!!! TTAATTTCTTATTTTAATCA+TGG + chr3_1:88310813-88310832 None:intergenic 10.0%
!! ATGATTAAAATAAGAAATTA+AGG - chr3_1:88310812-88310831 Msa0384880:intron 10.0%
!!! AATATAGATTTTCAACTATT+TGG - chr3_1:88306851-88306870 Msa0384880:three_prime_UTR 15.0%
!!! CACAATTTTTCATATTAATT+GGG + chr3_1:88307496-88307515 None:intergenic 15.0%
!! ATCAATTACAATTTCATAAT+TGG - chr3_1:88308269-88308288 Msa0384880:intron 15.0%
!!! TAAAATCCAAATTTTTTGAA+GGG + chr3_1:88309041-88309060 None:intergenic 15.0%
!!! ATAAAATCCAAATTTTTTGA+AGG + chr3_1:88309042-88309061 None:intergenic 15.0%
!!! TAATATTCATTCAGATTTTA+GGG + chr3_1:88309134-88309153 None:intergenic 15.0%
!!! TTAATATTCATTCAGATTTT+AGG + chr3_1:88309135-88309154 None:intergenic 15.0%
!!! TTTTTAACATCCAAATAAAA+AGG - chr3_1:88309246-88309265 Msa0384880:intron 15.0%
!!! TTTTAACATCCAAATAAAAA+GGG - chr3_1:88309247-88309266 Msa0384880:intron 15.0%
!!! TATGGTTTTTTTTTTTTGAA+GGG + chr3_1:88309431-88309450 None:intergenic 15.0%
!!! TTATGGTTTTTTTTTTTTGA+AGG + chr3_1:88309432-88309451 None:intergenic 15.0%
!! TTGATTATATGTATTGTTTA+TGG + chr3_1:88309449-88309468 None:intergenic 15.0%
!! TAAAAAAGAAAAAGAAATGA+AGG + chr3_1:88310448-88310467 None:intergenic 15.0%
!! TAAGATAATTATTGAATCTT+TGG - chr3_1:88311513-88311532 Msa0384880:intron 15.0%
!! CAAAATAAATACCTTAAAAT+TGG + chr3_1:88311624-88311643 None:intergenic 15.0%
!! AATGCGAAAATAAAATAAAA+TGG + chr3_1:88312116-88312135 None:intergenic 15.0%
!!! ATTTTATTTTATTTTCGCAT+TGG - chr3_1:88312115-88312134 Msa0384880:intron 15.0%
!!! TACTTATATAATTGCATTTT+AGG + chr3_1:88312548-88312567 None:intergenic 15.0%
!! TATAAATCAATTCTCATGTT+TGG + chr3_1:88307309-88307328 None:intergenic 20.0%
!! TTTATAAACCTAGTTATTCA+TGG - chr3_1:88307323-88307342 Msa0384880:intron 20.0%
!!! GCACAATTTTTCATATTAAT+TGG + chr3_1:88307497-88307516 None:intergenic 20.0%
!! CAAAACATTTCCATATTTAA+AGG - chr3_1:88307899-88307918 Msa0384880:intron 20.0%
!! AATAAGCAATCCTTTAAATA+TGG + chr3_1:88307912-88307931 None:intergenic 20.0%
!! TATTATGACATTCATATTTG+TGG - chr3_1:88307954-88307973 Msa0384880:intron 20.0%
!! ATAATTATGTCAGTTTACAA+TGG - chr3_1:88308095-88308114 Msa0384880:intron 20.0%
!!! ATATTCAAAGAATACGTTTT+TGG + chr3_1:88308150-88308169 None:intergenic 20.0%
!!! TGAAATTGTAATTGATGATT+AGG + chr3_1:88308265-88308284 None:intergenic 20.0%
!!! CAGTTTTATGGTTTAAATTA+TGG - chr3_1:88308407-88308426 Msa0384880:intron 20.0%
!!! AATTTTGAATGATCGATTTT+TGG + chr3_1:88308639-88308658 None:intergenic 20.0%
!!! ATCAATTATTGATGATTTCA+AGG + chr3_1:88308728-88308747 None:intergenic 20.0%
!! GAAATCATCAATAATTGATT+CGG - chr3_1:88308729-88308748 Msa0384880:intron 20.0%
!! TATGTCAGTTTATATTGAAA+GGG + chr3_1:88308776-88308795 None:intergenic 20.0%
!!! GGTTTTGGTTATTTTTATAA+GGG + chr3_1:88309199-88309218 None:intergenic 20.0%
!!! TTTGATATTGTTTTTGAGAT+GGG + chr3_1:88309220-88309239 None:intergenic 20.0%
!!! TTTTGATATTGTTTTTGAGA+TGG + chr3_1:88309221-88309240 None:intergenic 20.0%
!!! ACTTACAATTTTCAACAATT+AGG - chr3_1:88309544-88309563 Msa0384880:intron 20.0%
!!! CTTACAATTTTCAACAATTA+GGG - chr3_1:88309545-88309564 Msa0384880:intron 20.0%
!! TAGTAAGATATTTCACATTT+GGG + chr3_1:88309783-88309802 None:intergenic 20.0%
!! TTAGTAAGATATTTCACATT+TGG + chr3_1:88309784-88309803 None:intergenic 20.0%
!!! ATTTATATAGAAGGGTATAA+TGG - chr3_1:88309810-88309829 Msa0384880:intron 20.0%
!! ATAACATAATATTTGAACCA+TGG + chr3_1:88310207-88310226 None:intergenic 20.0%
!! CATAATATTTGAACAAACAT+CGG + chr3_1:88310269-88310288 None:intergenic 20.0%
!!! AAACAAATGAAAGTAGATTT+TGG + chr3_1:88310373-88310392 None:intergenic 20.0%
!! ATTCCATTAAGTTTCAATTA+TGG + chr3_1:88310596-88310615 None:intergenic 20.0%
!! CTCAAATATACAATACAATA+TGG + chr3_1:88310625-88310644 None:intergenic 20.0%
!!! TCAAAAAGTATTGAAAAAGT+AGG + chr3_1:88310676-88310695 None:intergenic 20.0%
!! TGCAATGTATTTATTATCTT+CGG - chr3_1:88310710-88310729 Msa0384880:intron 20.0%
!! AGTTGAAATTCATAAAACAA+AGG + chr3_1:88311058-88311077 None:intergenic 20.0%
!! CATTAGAAATAAAAGAACAT+TGG + chr3_1:88311118-88311137 None:intergenic 20.0%
!!! AACAGTTTTACCTTTATTTT+AGG - chr3_1:88311298-88311317 Msa0384880:intron 20.0%
!!! TTTTACTTATATTAAGTACC+TGG - chr3_1:88311676-88311695 Msa0384880:intron 20.0%
!! TACATATATAAATGCATTGA+AGG - chr3_1:88312176-88312195 Msa0384880:intron 20.0%
!!! ATTTTAGGTAAAAAGATTTC+AGG + chr3_1:88312533-88312552 None:intergenic 20.0%
!! AAATGCAATTATATAAGTAC+AGG - chr3_1:88312549-88312568 Msa0384880:intron 20.0%
! GAAGTCAAATAAAATTGACT+AGG - chr3_1:88306375-88306394 Msa0384880:three_prime_UTR 25.0%
! ATCAATAGAAAAAACGACTT+TGG + chr3_1:88306622-88306641 None:intergenic 25.0%
! AAGTGATTAAACCAAAATCA+GGG + chr3_1:88306717-88306736 None:intergenic 25.0%
! AAAGTGATTAAACCAAAATC+AGG + chr3_1:88306718-88306737 None:intergenic 25.0%
!! TACTTGTTAGATTAGATTGT+AGG - chr3_1:88306739-88306758 Msa0384880:three_prime_UTR 25.0%
!!! ACTTTGATTTTATGCTGTTT+AGG - chr3_1:88306787-88306806 Msa0384880:three_prime_UTR 25.0%
! ACAATTTACTTTATTACCCT+TGG + chr3_1:88307189-88307208 None:intergenic 25.0%
! AAGTAAATTGTCGAGTTAAT+TGG - chr3_1:88307198-88307217 Msa0384880:CDS 25.0%
! TGAATAATGATTTGAAGAGT+AGG - chr3_1:88307704-88307723 Msa0384880:intron 25.0%
!! TCACTGTGATTTAACAATTT+TGG - chr3_1:88307824-88307843 Msa0384880:CDS 25.0%
!! CACTGTGATTTAACAATTTT+GGG - chr3_1:88307825-88307844 Msa0384880:CDS 25.0%
! GTAAACTGACATAATTATGA+AGG + chr3_1:88308093-88308112 None:intergenic 25.0%
!! TTTTATATTACATGTCTGCA+TGG + chr3_1:88308371-88308390 None:intergenic 25.0%
!! TGATGATTTCATCAGTTTTA+TGG - chr3_1:88308395-88308414 Msa0384880:intron 25.0%
! TCTAGATTCAAATTGTGAAT+TGG - chr3_1:88308438-88308457 Msa0384880:intron 25.0%
!!! TTATGTTTTGCTATGTCAAA+AGG + chr3_1:88308492-88308511 None:intergenic 25.0%
! AATTATAAGCTGATAATCAG+TGG - chr3_1:88308515-88308534 Msa0384880:intron 25.0%
! GTTCATTAAATACCTAAAGA+TGG - chr3_1:88308683-88308702 Msa0384880:intron 25.0%
! GTATGTCAGTTTATATTGAA+AGG + chr3_1:88308777-88308796 None:intergenic 25.0%
! AGAATCCAATAATTGAAGAT+GGG + chr3_1:88308820-88308839 None:intergenic 25.0%
! TTCATCTCTTTGAATATCAA+CGG - chr3_1:88308877-88308896 Msa0384880:intron 25.0%
!! GATTTTATCGTGTTAGTATA+TGG + chr3_1:88308992-88309011 None:intergenic 25.0%
! AATACACCCTTCAAAAAATT+TGG - chr3_1:88309032-88309051 Msa0384880:intron 25.0%
!!! TTTGGTTATTTTTATAAGGG+TGG + chr3_1:88309196-88309215 None:intergenic 25.0%
!!! GGGTTTTGGTTATTTTTATA+AGG + chr3_1:88309200-88309219 None:intergenic 25.0%
!!! TTTTTTTTTTGAAGGGTGTA+TGG + chr3_1:88309424-88309443 None:intergenic 25.0%
!! TAAATTTTCTCTTTCATCAG+TGG + chr3_1:88309758-88309777 None:intergenic 25.0%
! TGGTAATTTCATATAAACGA+TGG - chr3_1:88309830-88309849 Msa0384880:intron 25.0%
! GGTAATTTCATATAAACGAT+GGG - chr3_1:88309831-88309850 Msa0384880:intron 25.0%
! GTAATTTCATATAAACGATG+GGG - chr3_1:88309832-88309851 Msa0384880:intron 25.0%
! ATATGATATATTATCAGCAG+AGG + chr3_1:88309893-88309912 None:intergenic 25.0%
!! TTGAATCTTGAATTAGTTTG+AGG + chr3_1:88309921-88309940 None:intergenic 25.0%
! ATCAAATGACAAAAGAAAAG+TGG - chr3_1:88309948-88309967 Msa0384880:intron 25.0%
! ACAAATTGACAAGTAAAAAG+TGG - chr3_1:88309979-88309998 Msa0384880:intron 25.0%
! AAGTTTATGTAGTGATTCAT+TGG - chr3_1:88310013-88310032 Msa0384880:intron 25.0%
! TTATGCAGTTCAAAAAACAA+AGG - chr3_1:88310496-88310515 Msa0384880:intron 25.0%
! TTGCCATAATTGAAACTTAA+TGG - chr3_1:88310590-88310609 Msa0384880:intron 25.0%
! AAAGAAAAGGTCAAAAATTC+GGG + chr3_1:88310901-88310920 None:intergenic 25.0%
! GAAAGAAAAGGTCAAAAATT+CGG + chr3_1:88310902-88310921 None:intergenic 25.0%
!! ATTTTTGACCTTTTCTTTCA+TGG - chr3_1:88310903-88310922 Msa0384880:intron 25.0%
! AGAATAATTCTACAATTCAG+AGG + chr3_1:88310970-88310989 None:intergenic 25.0%
!! CTTAGTTTCATCCAATTTTA+AGG - chr3_1:88311610-88311629 Msa0384880:intron 25.0%
! AAATCACAATAAGAGTTCAT+TGG - chr3_1:88311823-88311842 Msa0384880:intron 25.0%
! TTGTGTGTATACAATAAAAG+AGG - chr3_1:88312256-88312275 Msa0384880:intron 25.0%
! AACAAAACATCTCTATCTAT+GGG + chr3_1:88312594-88312613 None:intergenic 25.0%
!!! TAAACTAGAAGCGTTAAAAT+AGG - chr3_1:88312768-88312787 Msa0384880:five_prime_UTR 25.0%
! TACATTGAAAGATGTAAGTA+AGG + chr3_1:88312825-88312844 None:intergenic 25.0%
!!! AAGACTTTTTTTTCTTCTTC+TGG - chr3_1:88312848-88312867 Msa0384880:five_prime_UTR 25.0%
ATGGAAGATGAAAACAGTTA+CGG - chr3_1:88306477-88306496 Msa0384880:three_prime_UTR 30.0%
! ATCCTATGCAATTGCAATTT+TGG - chr3_1:88306918-88306937 Msa0384880:CDS 30.0%
AACCAAAATTGCAATTGCAT+AGG + chr3_1:88306923-88306942 None:intergenic 30.0%
!!! AATTGGTTTTCCGGATTAAT+CGG - chr3_1:88307070-88307089 Msa0384880:intron 30.0%
TATATTCGATTTCTGACCAA+GGG - chr3_1:88307170-88307189 Msa0384880:CDS 30.0%
TGCAAATCAAATTCCATGTT+TGG + chr3_1:88307251-88307270 None:intergenic 30.0%
GTAATTGAAATCCAAATGAG+CGG + chr3_1:88307391-88307410 None:intergenic 30.0%
TCCATGTATAATATACCAAC+TGG - chr3_1:88307656-88307675 Msa0384880:CDS 30.0%
! ACCAGTTGGTATATTATACA+TGG + chr3_1:88307660-88307679 None:intergenic 30.0%
ATATGCAAAAAAACACCAGT+TGG + chr3_1:88307674-88307693 None:intergenic 30.0%
TAGTAATCAATCCTGGAAAA+TGG + chr3_1:88307869-88307888 None:intergenic 30.0%
! ATTTTCCAGGATTGATTACT+AGG - chr3_1:88307868-88307887 Msa0384880:CDS 30.0%
TCGATTCATGAATGGAAAAA+AGG + chr3_1:88308468-88308487 None:intergenic 30.0%
ATACTATCTGCTAGATACTT+AGG - chr3_1:88308793-88308812 Msa0384880:intron 30.0%
GAGAATCCAATAATTGAAGA+TGG + chr3_1:88308821-88308840 None:intergenic 30.0%
!! GAATCGATTCTATTTTCAAG+AGG + chr3_1:88308907-88308926 None:intergenic 30.0%
!! TTGTTTTGTAGCATTTGAAG+CGG + chr3_1:88308948-88308967 None:intergenic 30.0%
!!! ATTGTTTTTGAGATGGGTTT+TGG + chr3_1:88309214-88309233 None:intergenic 30.0%
!! GGAGTATTACCCTTTTTATT+TGG + chr3_1:88309259-88309278 None:intergenic 30.0%
!! TCTTTCGGTATGTTTTTATG+TGG + chr3_1:88309280-88309299 None:intergenic 30.0%
!! TTCTGCTTTTCAATCTTCTT+CGG + chr3_1:88309387-88309406 None:intergenic 30.0%
!!! TGGATCACGATTTGATTTTT+TGG - chr3_1:88309694-88309713 Msa0384880:intron 30.0%
!!! TCACGATTTGATTTTTTGGT+TGG - chr3_1:88309698-88309717 Msa0384880:intron 30.0%
!!! CACGATTTGATTTTTTGGTT+GGG - chr3_1:88309699-88309718 Msa0384880:intron 30.0%
AATGACAAAAGAAAAGTGGT+TGG - chr3_1:88309952-88309971 Msa0384880:intron 30.0%
ATTGACAAGTAAAAAGTGGT+TGG - chr3_1:88309983-88310002 Msa0384880:intron 30.0%
TGCGATTCATCATAATGAAT+TGG - chr3_1:88310068-88310087 Msa0384880:intron 30.0%
ATATTTGAACCATGGTTAAC+TGG + chr3_1:88310199-88310218 None:intergenic 30.0%
! TATTGCTGATTATGTTGAGT+TGG - chr3_1:88310224-88310243 Msa0384880:intron 30.0%
CTACACAACGATATTATTGT+TGG - chr3_1:88310757-88310776 Msa0384880:intron 30.0%
! GAGACTATGCTTTTATATCT+GGG - chr3_1:88310779-88310798 Msa0384880:intron 30.0%
AAGAAAAGGTCAAAAATTCG+GGG + chr3_1:88310900-88310919 None:intergenic 30.0%
TACAATTAAAACGTGTCATG+AGG + chr3_1:88310941-88310960 None:intergenic 30.0%
AAAAGTAGATCTGACATAGA+AGG - chr3_1:88311031-88311050 Msa0384880:CDS 30.0%
TAAAACTGTTACCAAACTCA+AGG + chr3_1:88311288-88311307 None:intergenic 30.0%
!!! TACCTTTATTTTAGGTGACA+AGG - chr3_1:88311306-88311325 Msa0384880:intron 30.0%
AACCTTGTCACCTAAAATAA+AGG + chr3_1:88311311-88311330 None:intergenic 30.0%
CATGAAAACATGGATGATTA+TGG - chr3_1:88311376-88311395 Msa0384880:intron 30.0%
ATGATTATGGAAAATTGTGC+CGG - chr3_1:88311389-88311408 Msa0384880:intron 30.0%
GATTAAAAATCGTCAAGTAC+AGG - chr3_1:88311432-88311451 Msa0384880:intron 30.0%
ACAATTAAGCGATAGTTCAA+TGG + chr3_1:88311474-88311493 None:intergenic 30.0%
ATAATCTTCCAGTTGAATCA+AGG + chr3_1:88311542-88311561 None:intergenic 30.0%
GTAAAAGTTAACATGAGCAA+TGG + chr3_1:88311662-88311681 None:intergenic 30.0%
TACTTATATTAAGTACCTGG+CGG - chr3_1:88311679-88311698 Msa0384880:intron 30.0%
! TTTGTATCAGTTTGTTTGAC+TGG + chr3_1:88311966-88311985 None:intergenic 30.0%
CAAAAAAAAAAACATACCGC+AGG + chr3_1:88312092-88312111 None:intergenic 30.0%
!!! CTGCGGTATGTTTTTTTTTT+TGG - chr3_1:88312090-88312109 Msa0384880:intron 30.0%
TACGAAGTTAGAGAAATACA+AGG + chr3_1:88312366-88312385 None:intergenic 30.0%
TCGAGAATTCAGTTTCTTTA+TGG - chr3_1:88312406-88312425 Msa0384880:intron 30.0%
GAACAAAACATCTCTATCTA+TGG + chr3_1:88312595-88312614 None:intergenic 30.0%
GTTGGATATATATATACCTG+CGG + chr3_1:88312704-88312723 None:intergenic 30.0%
!! TAGAAGCGTTAAAATAGGTT+GGG - chr3_1:88312773-88312792 Msa0384880:five_prime_UTR 30.0%
AGATCGATCAAGAATCAAGA+TGG - chr3_1:88306458-88306477 Msa0384880:three_prime_UTR 35.0%
! GAAAAAACGACTTTGGAAAG+AGG + chr3_1:88306615-88306634 None:intergenic 35.0%
! TCTTTCACTATCCCTGATTT+TGG - chr3_1:88306703-88306722 Msa0384880:three_prime_UTR 35.0%
TAAACTTGATATCCAACCCA+GGG + chr3_1:88307097-88307116 None:intergenic 35.0%
TTAAACTTGATATCCAACCC+AGG + chr3_1:88307098-88307117 None:intergenic 35.0%
GTATATTCGATTTCTGACCA+AGG - chr3_1:88307169-88307188 Msa0384880:CDS 35.0%
AATCAAATTCCATGTTTGGC+TGG + chr3_1:88307247-88307266 None:intergenic 35.0%
GCATTAAATTACAGAAGTCG+CGG - chr3_1:88307449-88307468 Msa0384880:intron 35.0%
TGTCATTCTGATGAATTGCA+TGG - chr3_1:88307550-88307569 Msa0384880:intron 35.0%
ATCTATATGAAGTGGACAAG+TGG + chr3_1:88307609-88307628 None:intergenic 35.0%
ACTTGTCCACTTCATATAGA+TGG - chr3_1:88307608-88307627 Msa0384880:CDS 35.0%
TAGTTGCCATCTATATGAAG+TGG + chr3_1:88307617-88307636 None:intergenic 35.0%
! GAATCTCGATTTGATAACCA+TGG - chr3_1:88307745-88307764 Msa0384880:intron 35.0%
TTAAAAGTTTGTGGCAACCA+TGG + chr3_1:88307765-88307784 None:intergenic 35.0%
! GGCAAAATGAGTTTTTGCAT+GGG + chr3_1:88307789-88307808 None:intergenic 35.0%
CAGTGAAACATTCAAATCGA+GGG + chr3_1:88307810-88307829 None:intergenic 35.0%
ACAGTGAAACATTCAAATCG+AGG + chr3_1:88307811-88307830 None:intergenic 35.0%
AAGAACCTAGTAATCAATCC+TGG + chr3_1:88307876-88307895 None:intergenic 35.0%
CAAAAGGTTCGATTCATGAA+TGG + chr3_1:88308476-88308495 None:intergenic 35.0%
TATAAGCTGATAATCAGTGG+CGG - chr3_1:88308518-88308537 Msa0384880:intron 35.0%
!!! AGTTTATTTTGATGGCGAGA+TGG + chr3_1:88308572-88308591 None:intergenic 35.0%
AAAGCGTAAAGTCCATCTTT+AGG + chr3_1:88308698-88308717 None:intergenic 35.0%
! ATTGATGATTTCAAGGCACT+CGG + chr3_1:88308721-88308740 None:intergenic 35.0%
TAGGTCCCATCTTCAATTAT+TGG - chr3_1:88308812-88308831 Msa0384880:intron 35.0%
!! CGATTCTATTTTCAAGAGGA+AGG + chr3_1:88308903-88308922 None:intergenic 35.0%
!! TGATTTTGGGTAATTGGGTA+TGG + chr3_1:88309170-88309189 None:intergenic 35.0%
!! GGTGATGATTTTGGGTAATT+GGG + chr3_1:88309175-88309194 None:intergenic 35.0%
!! TGGTGATGATTTTGGGTAAT+TGG + chr3_1:88309176-88309195 None:intergenic 35.0%
!! ATAAGGGTGGTGATGATTTT+GGG + chr3_1:88309183-88309202 None:intergenic 35.0%
!! TATAAGGGTGGTGATGATTT+TGG + chr3_1:88309184-88309203 None:intergenic 35.0%
!!! TTTTTTTGAAGGGTGTATGG+AGG + chr3_1:88309421-88309440 None:intergenic 35.0%
!! TTAGGGTTTGTTGAGAGAAA+TGG - chr3_1:88309562-88309581 Msa0384880:intron 35.0%
ATGAAGATAGAGATGGAGAT+TGG - chr3_1:88309624-88309643 Msa0384880:intron 35.0%
ATTTCATATAAACGATGGGG+TGG - chr3_1:88309835-88309854 Msa0384880:intron 35.0%
TGATATATTATCAGCAGAGG+CGG + chr3_1:88309890-88309909 None:intergenic 35.0%
GTGATTCATTGGAATGAATC+AGG - chr3_1:88310024-88310043 Msa0384880:intron 35.0%
TTGTAAGATCCAGTTAACCA+TGG - chr3_1:88310187-88310206 Msa0384880:intron 35.0%
CAGTTCAAAAAACAAAGGTG+AGG - chr3_1:88310501-88310520 Msa0384880:intron 35.0%
TATCGTTGTGTAGTAGATCA+AGG + chr3_1:88310750-88310769 None:intergenic 35.0%
! GGAGACTATGCTTTTATATC+TGG - chr3_1:88310778-88310797 Msa0384880:intron 35.0%
!! ACCTCTTGCAGTTTTATATG+AGG - chr3_1:88310860-88310879 Msa0384880:intron 35.0%
TCCTCATATAAAACTGCAAG+AGG + chr3_1:88310864-88310883 None:intergenic 35.0%
AGAAAAGGTCAAAAATTCGG+GGG + chr3_1:88310899-88310918 None:intergenic 35.0%
AAAGGTGACCATGAAAGAAA+AGG + chr3_1:88310914-88310933 None:intergenic 35.0%
AACGTGTCATGAGGAAAAAA+AGG + chr3_1:88310932-88310951 None:intergenic 35.0%
!!! GCACTCGTCACTTTTTTTTA+GGG + chr3_1:88311211-88311230 None:intergenic 35.0%
!!! AGCACTCGTCACTTTTTTTT+AGG + chr3_1:88311212-88311231 None:intergenic 35.0%
CAGTTATCACAGTAAAAGCT+TGG - chr3_1:88311259-88311278 Msa0384880:intron 35.0%
TGATTATGGAAAATTGTGCC+GGG - chr3_1:88311390-88311409 Msa0384880:intron 35.0%
! TTTGGTTTCCTTGATTCAAC+TGG - chr3_1:88311531-88311550 Msa0384880:intron 35.0%
GTATGATACAGTAGATTCTC+AGG - chr3_1:88311764-88311783 Msa0384880:intron 35.0%
AGTTCATTGGAATTGATCCT+TGG - chr3_1:88311836-88311855 Msa0384880:intron 35.0%
!! TACTCTTCTGAAACTCTTGT+AGG - chr3_1:88311923-88311942 Msa0384880:intron 35.0%
AACTCTTGTAGGATAAGAAG+AGG - chr3_1:88311934-88311953 Msa0384880:intron 35.0%
TATTTGAAAGACAGCCTAAC+TGG - chr3_1:88312033-88312052 Msa0384880:intron 35.0%
ATTTGAAAGACAGCCTAACT+GGG - chr3_1:88312034-88312053 Msa0384880:intron 35.0%
TCGACAGATTTCTTGTATTC+AGG + chr3_1:88312310-88312329 None:intergenic 35.0%
AGTCAACGTGTTAAGTAAAG+AGG - chr3_1:88312433-88312452 Msa0384880:intron 35.0%
! ACTTCACTCTGAAGAATGTT+TGG - chr3_1:88312505-88312524 Msa0384880:intron 35.0%
!!! ATCGTGCCTGTTTTAGTTTT+TGG - chr3_1:88312650-88312669 Msa0384880:CDS 35.0%
!!! TGCCTGTTTTAGTTTTTGGA+GGG - chr3_1:88312654-88312673 Msa0384880:CDS 35.0%
!! CTAGAAGCGTTAAAATAGGT+TGG - chr3_1:88312772-88312791 Msa0384880:five_prime_UTR 35.0%
!! AGAAGCGTTAAAATAGGTTG+GGG - chr3_1:88312774-88312793 Msa0384880:five_prime_UTR 35.0%
GAAGATGAAAACAGTTACGG+TGG - chr3_1:88306480-88306499 Msa0384880:three_prime_UTR 40.0%
TTCAAACTTGGAGACATCGA+AGG - chr3_1:88306515-88306534 Msa0384880:three_prime_UTR 40.0%
! ACTTTGGAAAGAGGTTGAGA+AGG + chr3_1:88306606-88306625 None:intergenic 40.0%
AAAAGAACCTGAAGATGAGC+AGG + chr3_1:88306666-88306685 None:intergenic 40.0%
ATTCAAACTGAGACCTAGAG+AGG + chr3_1:88306971-88306990 None:intergenic 40.0%
! AGCTTTGCTATGCCTCAATT+GGG - chr3_1:88307040-88307059 Msa0384880:intron 40.0%
TGGCGTATATTCGAGGTTAA+TGG + chr3_1:88307227-88307246 None:intergenic 40.0%
CCATAGCACCATGAATAACT+AGG + chr3_1:88307334-88307353 None:intergenic 40.0%
! CCTAGTTATTCATGGTGCTA+TGG - chr3_1:88307331-88307350 Msa0384880:intron 40.0%
TGCATGGGCTTAAAAGTTTG+TGG + chr3_1:88307774-88307793 None:intergenic 40.0%
! GGGCAAAATGAGTTTTTGCA+TGG + chr3_1:88307790-88307809 None:intergenic 40.0%
! ATATTTGTGGACTGTGCACT+AGG - chr3_1:88307967-88307986 Msa0384880:intron 40.0%
TGACTGTCTTAAAGCAACAC+AGG + chr3_1:88308057-88308076 None:intergenic 40.0%
CAGTTTACAATGGAGATGTC+TGG - chr3_1:88308105-88308124 Msa0384880:intron 40.0%
GGAGCCAGACAAAAAAGTTT+GGG - chr3_1:88308539-88308558 Msa0384880:intron 40.0%
GAGCCAGACAAAAAAGTTTG+GGG - chr3_1:88308540-88308559 Msa0384880:intron 40.0%
!!! TTATTTTGATGGCGAGATGG+CGG + chr3_1:88308569-88308588 None:intergenic 40.0%
TTGCTTCAAGGGCTTTCTTT+CGG + chr3_1:88309295-88309314 None:intergenic 40.0%
!! TGGTACCACTTTTGCTTCAA+GGG + chr3_1:88309306-88309325 None:intergenic 40.0%
TCTCACTTCAGAGTTCAGAT+CGG - chr3_1:88309599-88309618 Msa0384880:intron 40.0%
AAGATAGAGATGGAGATTGG+TGG - chr3_1:88309627-88309646 Msa0384880:intron 40.0%
ATCTCTAGCGTGTATCTACA+CGG + chr3_1:88310115-88310134 None:intergenic 40.0%
! CGCTAGAGATTTGTATCGAT+TGG - chr3_1:88310125-88310144 Msa0384880:intron 40.0%
!! TGCTGATTATGTTGAGTTGG+TGG - chr3_1:88310227-88310246 Msa0384880:intron 40.0%
TAGATTAGAGGCAGAGTTGA+AGG + chr3_1:88310415-88310434 None:intergenic 40.0%
CTGCCTCTAATCTAATATCG+TGG - chr3_1:88310421-88310440 Msa0384880:intron 40.0%
GGACCACGATATTAGATTAG+AGG + chr3_1:88310427-88310446 None:intergenic 40.0%
TTGTGTAGTAGATCAAGGAG+GGG + chr3_1:88310745-88310764 None:intergenic 40.0%
GTTGTGTAGTAGATCAAGGA+GGG + chr3_1:88310746-88310765 None:intergenic 40.0%
AAAAGGTCAAAAATTCGGGG+GGG + chr3_1:88310897-88310916 None:intergenic 40.0%
GAAAAGGTCAAAAATTCGGG+GGG + chr3_1:88310898-88310917 None:intergenic 40.0%
TTTCTTATCCTGTGCCCTTA+GGG - chr3_1:88311170-88311189 Msa0384880:intron 40.0%
AAGCTTGGTTTCCTTGAGTT+TGG - chr3_1:88311274-88311293 Msa0384880:intron 40.0%
TTTAGGTGACAAGGTTGCAA+TGG - chr3_1:88311315-88311334 Msa0384880:intron 40.0%
! TCATCCATGTTTTCATGACG+TGG + chr3_1:88311373-88311392 None:intergenic 40.0%
TAGATTTCTTTGTCCTCTCC+CGG + chr3_1:88311411-88311430 None:intergenic 40.0%
AAGATTATTGCTGATGACCG+TGG - chr3_1:88311554-88311573 Msa0384880:intron 40.0%
TTGGAATTGATCCTTGGAGA+AGG - chr3_1:88311842-88311861 Msa0384880:intron 40.0%
CATGCATGGAGTAATTCTGT+GGG - chr3_1:88311891-88311910 Msa0384880:intron 40.0%
ATGCATGGAGTAATTCTGTG+GGG - chr3_1:88311892-88311911 Msa0384880:intron 40.0%
CAAAGAGAACCAGAAGAGAT+CGG - chr3_1:88311982-88312001 Msa0384880:intron 40.0%
AAAGAGAACCAGAAGAGATC+GGG - chr3_1:88311983-88312002 Msa0384880:intron 40.0%
CTCTTGAACAAGTTGCTTCA+AGG + chr3_1:88312060-88312079 None:intergenic 40.0%
! GCATTGGAACACTCTGATTT+TGG - chr3_1:88312131-88312150 Msa0384880:intron 40.0%
!!! ATTTTGGTTTCTCACAGCTC+TGG - chr3_1:88312147-88312166 Msa0384880:intron 40.0%
ATTGCTGCAGCAGAAATAGT+GGG + chr3_1:88312213-88312232 None:intergenic 40.0%
AATTGCTGCAGCAGAAATAG+TGG + chr3_1:88312214-88312233 None:intergenic 40.0%
!! AATAAAAGAGGCGCCAATCA+AGG - chr3_1:88312268-88312287 Msa0384880:intron 40.0%
CAGCTCATAAGTTCCTTGAT+TGG + chr3_1:88312284-88312303 None:intergenic 40.0%
! TCTCGATCTTCTTTTCAGTG+AGG + chr3_1:88312392-88312411 None:intergenic 40.0%
!!! GTGCCTGTTTTAGTTTTTGG+AGG - chr3_1:88312653-88312672 Msa0384880:CDS 40.0%
TGCCCTCCAAAAACTAAAAC+AGG + chr3_1:88312659-88312678 None:intergenic 40.0%
TCTGTCTTACAATTTACCGC+AGG - chr3_1:88312685-88312704 Msa0384880:CDS 40.0%
TTGTAACGTGAGTACAACGT+TGG + chr3_1:88312722-88312741 None:intergenic 40.0%
TAGTCTGTGAAGTGAACACT+AGG + chr3_1:88312750-88312769 None:intergenic 40.0%
AGACACGAACGAACGAACAT+AGG - chr3_1:88306413-88306432 Msa0384880:three_prime_UTR 45.0%
GACACGAACGAACGAACATA+GGG - chr3_1:88306414-88306433 Msa0384880:three_prime_UTR 45.0%
AACGAACGAACATAGGGAGT+AGG - chr3_1:88306420-88306439 Msa0384880:three_prime_UTR 45.0%
AACAGTTACGGTGGAAGTAG+CGG - chr3_1:88306489-88306508 Msa0384880:three_prime_UTR 45.0%
AAGTAGCGGTGGTTCAAACT+TGG - chr3_1:88306503-88306522 Msa0384880:three_prime_UTR 45.0%
! CATGATTTGGCAACAGCAAC+AGG + chr3_1:88306570-88306589 None:intergenic 45.0%
! CTGTTGCTGTTGCCAAATCA+TGG - chr3_1:88306568-88306587 Msa0384880:three_prime_UTR 45.0%
! TGGATGGTTCTGCCATGATT+TGG + chr3_1:88306583-88306602 None:intergenic 45.0%
AAAGAGGTTGAGAAGGTGGA+TGG + chr3_1:88306599-88306618 None:intergenic 45.0%
TTGGAAAGAGGTTGAGAAGG+TGG + chr3_1:88306603-88306622 None:intergenic 45.0%
TGGTCCAACACAAGAACTGT+TGG + chr3_1:88307004-88307023 None:intergenic 45.0%
TTGTGTTGGACCAGTCCATA+TGG - chr3_1:88307011-88307030 Msa0384880:intron 45.0%
AGCAAAGCTGAAGCTCCATA+TGG + chr3_1:88307029-88307048 None:intergenic 45.0%
! CAGCTTTGCTATGCCTCAAT+TGG - chr3_1:88307039-88307058 Msa0384880:intron 45.0%
TTGCTATGCCTCAATTGGGA+CGG - chr3_1:88307044-88307063 Msa0384880:intron 45.0%
GAATATACGCCAGCCAAACA+TGG - chr3_1:88307235-88307254 Msa0384880:CDS 45.0%
AATGCAACGAATGCTGCTGT+AGG + chr3_1:88307434-88307453 None:intergenic 45.0%
CAATCCTGGAAAATGGCACA+TGG + chr3_1:88307862-88307881 None:intergenic 45.0%
GTCTCAGAGAAGATGCACAT+AGG + chr3_1:88308189-88308208 None:intergenic 45.0%
!! ATCTTCTCTGAGACAAGCGA+AGG - chr3_1:88308195-88308214 Msa0384880:intron 45.0%
CGGAGCCAGACAAAAAAGTT+TGG - chr3_1:88308538-88308557 Msa0384880:intron 45.0%
!!! CCACCCCAAACTTTTTTGTC+TGG + chr3_1:88308546-88308565 None:intergenic 45.0%
CCAGACAAAAAAGTTTGGGG+TGG - chr3_1:88308543-88308562 Msa0384880:intron 45.0%
! GGATTCTCGTGAACTTGTTC+AGG - chr3_1:88308833-88308852 Msa0384880:intron 45.0%
! CTCGTGAACTTGTTCAGGTT+CGG - chr3_1:88308838-88308857 Msa0384880:intron 45.0%
ATTGGGTATGGCTGTGATGT+GGG + chr3_1:88309158-88309177 None:intergenic 45.0%
AATTGGGTATGGCTGTGATG+TGG + chr3_1:88309159-88309178 None:intergenic 45.0%
GAAAGCCCTTGAAGCAAAAG+TGG - chr3_1:88309298-88309317 Msa0384880:intron 45.0%
!! CTGGTACCACTTTTGCTTCA+AGG + chr3_1:88309307-88309326 None:intergenic 45.0%
ATCGGCGATGAAGATAGAGA+TGG - chr3_1:88309617-88309636 Msa0384880:intron 45.0%
TCATATAAACGATGGGGTGG+CGG - chr3_1:88309838-88309857 Msa0384880:intron 45.0%
CGTTGTGTAGTAGATCAAGG+AGG + chr3_1:88310747-88310766 None:intergenic 45.0%
GAGGTTTCACTGCTACAAAG+TGG + chr3_1:88310845-88310864 None:intergenic 45.0%
AAAGGTCAAAAATTCGGGGG+GGG + chr3_1:88310896-88310915 None:intergenic 45.0%
GTTTCTTATCCTGTGCCCTT+AGG - chr3_1:88311169-88311188 Msa0384880:intron 45.0%
! CTTGCTAACTTGTGCCCTAA+GGG + chr3_1:88311187-88311206 None:intergenic 45.0%
! TCTTGCTAACTTGTGCCCTA+AGG + chr3_1:88311188-88311207 None:intergenic 45.0%
GTGACAAGGTTGCAATGGAA+GGG - chr3_1:88311320-88311339 Msa0384880:intron 45.0%
GAAGCCACGTCATGAAAACA+TGG - chr3_1:88311366-88311385 Msa0384880:intron 45.0%
GAAACTAAGCCAACCATTCC+AGG + chr3_1:88311599-88311618 None:intergenic 45.0%
ATATTAAGTACCTGGCGGTG+TGG - chr3_1:88311684-88311703 Msa0384880:intron 45.0%
GAAGGAACAAACCTTCTCCA+AGG + chr3_1:88311856-88311875 None:intergenic 45.0%
ATGCACACACGCACATTTGA+AGG + chr3_1:88311874-88311893 None:intergenic 45.0%
GCATGCATGGAGTAATTCTG+TGG - chr3_1:88311890-88311909 Msa0384880:intron 45.0%
AAGAGAACCAGAAGAGATCG+GGG - chr3_1:88311984-88312003 Msa0384880:intron 45.0%
TCAAGAGACTGATCAACCTG+CGG - chr3_1:88312073-88312092 Msa0384880:intron 45.0%
!! TAAAATATTATTTATATAGA+AGG - chr3_1:88309801-88309820 Msa0384880:intron 5.0%
!! AAAATATTATTTATATAGAA+GGG - chr3_1:88309802-88309821 Msa0384880:intron 5.0%
!! ATAAAAATTATTAATTACTT+GGG + chr3_1:88310332-88310351 None:intergenic 5.0%
!! AATAAAAATTATTAATTACT+TGG + chr3_1:88310333-88310352 None:intergenic 5.0%
CGAACATAGGGAGTAGGTGA+AGG - chr3_1:88306426-88306445 Msa0384880:three_prime_UTR 50.0%
GACATCGAAGGCAGAGAGAT+CGG - chr3_1:88306527-88306546 Msa0384880:three_prime_UTR 50.0%
GGATCGTCTTCAGGAAGAAG+AGG + chr3_1:88306645-88306664 None:intergenic 50.0%
AGATGAGCAGGATCGTCTTC+AGG + chr3_1:88306654-88306673 None:intergenic 50.0%
AGACGATCCTGCTCATCTTC+AGG - chr3_1:88306656-88306675 Msa0384880:three_prime_UTR 50.0%
! CTAGAGAGGAGCACACTTCT+AGG + chr3_1:88306957-88306976 None:intergenic 50.0%
! CTAGAAGTGTGCTCCTCTCT+AGG - chr3_1:88306955-88306974 Msa0384880:CDS 50.0%
GGTCTCAGTTTGAATCCTCC+AGG - chr3_1:88306976-88306995 Msa0384880:CDS 50.0%
!! ACACAAGAACTGTTGGCTCC+TGG + chr3_1:88306997-88307016 None:intergenic 50.0%
GGAGCCAACAGTTCTTGTGT+TGG - chr3_1:88306997-88307016 Msa0384880:intron 50.0%
AGCTGAAGCTCCATATGGAC+TGG + chr3_1:88307024-88307043 None:intergenic 50.0%
CAATTCCACCGTCCCAATTG+AGG + chr3_1:88307055-88307074 None:intergenic 50.0%
CTCAATTGGGACGGTGGAAT+TGG - chr3_1:88307053-88307072 Msa0384880:intron 50.0%
!!! GGACGGTGGAATTGGTTTTC+CGG - chr3_1:88307061-88307080 Msa0384880:intron 50.0%
TTTCCGGATTAATCGGTCCC+TGG - chr3_1:88307077-88307096 Msa0384880:intron 50.0%
TTCCGGATTAATCGGTCCCT+GGG - chr3_1:88307078-88307097 Msa0384880:intron 50.0%
AACCCAGGGACCGATTAATC+CGG + chr3_1:88307083-88307102 None:intergenic 50.0%
GTTTGGCTGGCGTATATTCG+AGG + chr3_1:88307234-88307253 None:intergenic 50.0%
! GTGCTATGGCTGTGCTATTG+CGG - chr3_1:88307345-88307364 Msa0384880:intron 50.0%
AAATCCAAATGAGCGGCCGA+AGG + chr3_1:88307384-88307403 None:intergenic 50.0%
GCTGTGTGCACAAAGTTCAG+GGG + chr3_1:88307587-88307606 None:intergenic 50.0%
GGCTGTGTGCACAAAGTTCA+GGG + chr3_1:88307588-88307607 None:intergenic 50.0%
TGGCTGTGTGCACAAAGTTC+AGG + chr3_1:88307589-88307608 None:intergenic 50.0%
! AAATGGCACATGGTGGTGAC+TGG + chr3_1:88307852-88307871 None:intergenic 50.0%
!!! ACCACCATGTGCCATTTTCC+AGG - chr3_1:88307855-88307874 Msa0384880:CDS 50.0%
TCCTGGAAAATGGCACATGG+TGG + chr3_1:88307859-88307878 None:intergenic 50.0%
! GCAACTGCTTCTTTTGCTGC+TGG + chr3_1:88309326-88309345 None:intergenic 50.0%
AGCAGAAGAGGAAGCAGAGA+AGG - chr3_1:88309361-88309380 Msa0384880:intron 50.0%
! TGGAGATTGGTGGCAGAGTT+TGG - chr3_1:88309637-88309656 Msa0384880:intron 50.0%
!! TGGTGGCAGAGTTTGGTTTG+CGG - chr3_1:88309644-88309663 Msa0384880:intron 50.0%
AACGTGTGTGGTGGTTGGAT+TGG - chr3_1:88309674-88309693 Msa0384880:intron 50.0%
TTATCAGCAGAGGCGGAACT+GGG + chr3_1:88309883-88309902 None:intergenic 50.0%
ATTATCAGCAGAGGCGGAAC+TGG + chr3_1:88309884-88309903 None:intergenic 50.0%
GCAGAGTTGAAGGAACACTC+TGG + chr3_1:88310405-88310424 None:intergenic 50.0%
AAGGTCAAAAATTCGGGGGG+GGG + chr3_1:88310895-88310914 None:intergenic 50.0%
GGTGACAAGGTTGCAATGGA+AGG - chr3_1:88311319-88311338 Msa0384880:intron 50.0%
ATGGAAAATTGTGCCGGGAG+AGG - chr3_1:88311395-88311414 Msa0384880:intron 50.0%
AAGCCAACCATTCCAGGCAT+TGG + chr3_1:88311593-88311612 None:intergenic 50.0%
AATGTGCGTGTGTGCATGCA+TGG - chr3_1:88311877-88311896 Msa0384880:intron 50.0%
AGTTGCTTCAAGGCCCAGTT+AGG + chr3_1:88312050-88312069 None:intergenic 50.0%
AGTTACGGTGGAAGTAGCGG+TGG - chr3_1:88306492-88306511 Msa0384880:three_prime_UTR 55.0%
!! CAAGAACTGTTGGCTCCTGG+AGG + chr3_1:88306994-88307013 None:intergenic 55.0%
CTATGCCTCAATTGGGACGG+TGG - chr3_1:88307047-88307066 Msa0384880:intron 55.0%
GGATTAATCGGTCCCTGGGT+TGG - chr3_1:88307082-88307101 Msa0384880:intron 55.0%
CGGCTGAACATTGCAGCCTT+CGG - chr3_1:88307365-88307384 Msa0384880:intron 55.0%
TGCAGCTACAGCAGCAGAAG+AGG - chr3_1:88309349-88309368 Msa0384880:intron 55.0%
!! TGGCAGAGTTTGGTTTGCGG+TGG - chr3_1:88309647-88309666 Msa0384880:intron 55.0%
GTGTGAACGTGTGTGGTGGT+TGG - chr3_1:88309669-88309688 Msa0384880:intron 55.0%
! TATAAACGATGGGGTGGCGG+TGG - chr3_1:88309841-88309860 Msa0384880:intron 55.0%
TATCAGCAGAGGCGGAACTG+GGG + chr3_1:88309882-88309901 None:intergenic 55.0%
AGGTCAAAAATTCGGGGGGG+GGG + chr3_1:88310894-88310913 None:intergenic 55.0%
! AACTTGTGCCCTAAGGGCAC+AGG + chr3_1:88311181-88311200 None:intergenic 55.0%
ATGACCGTGGAACGCACATG+AGG - chr3_1:88311567-88311586 Msa0384880:intron 55.0%
TTGGCCTCATGTGCGTTCCA+CGG + chr3_1:88311574-88311593 None:intergenic 55.0%
CATGAGGCCAATGCCTGGAA+TGG - chr3_1:88311583-88311602 Msa0384880:intron 55.0%
AGGCCAATGCCTGGAATGGT+TGG - chr3_1:88311587-88311606 Msa0384880:intron 55.0%
TGTGAAACTTCCACACCGCC+AGG + chr3_1:88311697-88311716 None:intergenic 55.0%
CGAAGGCAGAGAGATCGGTG+TGG - chr3_1:88306532-88306551 Msa0384880:three_prime_UTR 60.0%
TGCGGTGGTGTGAACGTGTG+TGG - chr3_1:88309662-88309681 Msa0384880:intron 60.0%
GGTGGTGTGAACGTGTGTGG+TGG - chr3_1:88309665-88309684 Msa0384880:intron 60.0%
ATCAGCAGAGGCGGAACTGG+GGG + chr3_1:88309881-88309900 None:intergenic 60.0%
TCAAAAATTCGGGGGGGGGG+GGG + chr3_1:88310891-88310910 None:intergenic 60.0%
GTCAAAAATTCGGGGGGGGG+GGG + chr3_1:88310892-88310911 None:intergenic 60.0%
GGTCAAAAATTCGGGGGGGG+GGG + chr3_1:88310893-88310912 None:intergenic 60.0%
ACGCACATGAGGCCAATGCC+TGG - chr3_1:88311578-88311597 Msa0384880:intron 60.0%
CAGCTCTCCCCGATCTCTTC+TGG + chr3_1:88311994-88312013 None:intergenic 60.0%
CAGAAGAGATCGGGGAGAGC+TGG - chr3_1:88311992-88312011 Msa0384880:intron 60.0%
AAGAGATCGGGGAGAGCTGG+AGG - chr3_1:88311995-88312014 Msa0384880:intron 60.0%
GCAGCCTTCGGCCGCTCATT+TGG - chr3_1:88307377-88307396 Msa0384880:intron 65.0%
TCAGCAGAGGCGGAACTGGG+GGG + chr3_1:88309880-88309899 None:intergenic 65.0%
AAAAATTCGGGGGGGGGGGG+GGG + chr3_1:88310889-88310908 None:intergenic 65.0%
CAAAAATTCGGGGGGGGGGG+GGG + chr3_1:88310890-88310909 None:intergenic 65.0%
GGAACTGGGGGGTGGCAAGG+GGG + chr3_1:88309869-88309888 None:intergenic 70.0%
CGGAACTGGGGGGTGGCAAG+GGG + chr3_1:88309870-88309889 None:intergenic 70.0%
GCGGAACTGGGGGGTGGCAA+GGG + chr3_1:88309871-88309890 None:intergenic 70.0%
GGCGGAACTGGGGGGTGGCA+AGG + chr3_1:88309872-88309891 None:intergenic 75.0%
GCAGAGGCGGAACTGGGGGG+TGG + chr3_1:88309877-88309896 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 88306362 88312875 88306362 ID=Msa0384880;Name=Msa0384880
chr3_1 mRNA 88306362 88312875 88306362 ID=Msa0384880-mRNA-1;Parent=Msa0384880;Name=Msa0384880-mRNA-1;_AED=0.02;_eAED=0.02;_QI=115|1|1|1|0.8|1|6|527|262
chr3_1 exon 88306362 88307008 88306362 ID=Msa0384880-mRNA-1:exon:23756;Parent=Msa0384880-mRNA-1
chr3_1 exon 88307143 88307292 88307143 ID=Msa0384880-mRNA-1:exon:23755;Parent=Msa0384880-mRNA-1
chr3_1 exon 88307606 88307680 88307606 ID=Msa0384880-mRNA-1:exon:23754;Parent=Msa0384880-mRNA-1
chr3_1 exon 88307784 88307917 88307784 ID=Msa0384880-mRNA-1:exon:23753;Parent=Msa0384880-mRNA-1
chr3_1 exon 88311021 88311129 88311021 ID=Msa0384880-mRNA-1:exon:23752;Parent=Msa0384880-mRNA-1
chr3_1 exon 88312560 88312875 88312560 ID=Msa0384880-mRNA-1:exon:23751;Parent=Msa0384880-mRNA-1
chr3_1 five_prime_UTR 88312761 88312875 88312761 ID=Msa0384880-mRNA-1:five_prime_utr;Parent=Msa0384880-mRNA-1
chr3_1 CDS 88312560 88312760 88312560 ID=Msa0384880-mRNA-1:cds;Parent=Msa0384880-mRNA-1
chr3_1 CDS 88311021 88311129 88311021 ID=Msa0384880-mRNA-1:cds;Parent=Msa0384880-mRNA-1
chr3_1 CDS 88307784 88307917 88307784 ID=Msa0384880-mRNA-1:cds;Parent=Msa0384880-mRNA-1
chr3_1 CDS 88307606 88307680 88307606 ID=Msa0384880-mRNA-1:cds;Parent=Msa0384880-mRNA-1
chr3_1 CDS 88307143 88307292 88307143 ID=Msa0384880-mRNA-1:cds;Parent=Msa0384880-mRNA-1
chr3_1 CDS 88306889 88307008 88306889 ID=Msa0384880-mRNA-1:cds;Parent=Msa0384880-mRNA-1
chr3_1 three_prime_UTR 88306362 88306888 88306362 ID=Msa0384880-mRNA-1:three_prime_utr;Parent=Msa0384880-mRNA-1
Gene Sequence

>Msa0384880

ATGGAAGATGAAAACAGTTACGGTGGAAGTAGCGGTGGTTCAAACTTGGAGACATCGAAGGCAGAGAGATCGGTGTGGCTTATGAAGTGTCCTGTTGCTGTTGCCAAATCATGGCAGAACCATCCACCTTCTCAACCTCTTTCCAAAGTCGTTTTTTCTATTGATCCTCTTCTTCCTGAAGACGATCCTGCTCATCTTCAGTTTACAATGGAGATGTCTGGCACTGAAGCTGTGAATATGCCAAAAACGTATTCTTTGAATATGTTTAAAGACTTCGTTCCTATGTGCATCTTCTCTGAGACAAGCGAAGGTGACAAGGTTGCAATGGAAGGGAAAGTAGAGCATAAGTTTGATATGAAGCCACGTCATGAAAACATGGATGATTATGGAAAATTGTGCCGGGAGAGGACAAAGAAATCTATGATTAAAAATCGTCAAGTACAGATTATTGCTGATGACCGTGGAACGCACATGAGGCCAATGCCTGGAATGGTTGGCTTAGTTTCATCCAATTTTAAGGATAAGAAGAGGACACAGCCAGTCAAACAAACTGATACAAAGAGAACCAGAAGAGATCGGGGAGAGCTGGAGGATATAATGTTCAAACTATTTGAAAGACAGCCTAACTGGGCCTTGAAGCAACTTGTTCAAGAGACTGATCAACCTGCGCAATTCTTGAAAGAGATCTTGAATGAATTGTGTGTATACAATAAAAGAGGCGCCAATCAAGGAACTTATGAGCTGAAACCTGAATACAAGAAATCTGTCGAAGATGCAAACGCTGAATAA
Protein sequence

>Msa0384880

MEDENSYGGSSGGSNLETSKAERSVWLMKCPVAVAKSWQNHPPSQPLSKVVFSIDPLLPEDDPAHLQFTMEMSGTEAVNMPKTYSLNMFKDFVPMCIFSETSEGDKVAMEGKVEHKFDMKPRHENMDDYGKLCRERTKKSMIKNRQVQIIADDRGTHMRPMPGMVGLVSSNFKDKKRTQPVKQTDTKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGANQGTYELKPEYKKSVEDANAE*