AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0131450


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0131450 MtrunA17_Chr1g0200241 98.452 323 5 0 1 323 1 323 0.0 667
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0131450 AT5G63220.1 64.923 325 109 3 1 321 1 324 1.51e-159 449
Msa0131450 AT5G63220.2 64.706 323 109 3 1 319 1 322 8.62e-158 444
Msa0131450 AT5G63220.3 65.862 290 95 2 36 321 1 290 1.25e-144 409

Find 74 sgRNAs with CRISPR-Local

Find 438 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCAGGTGGTCTGCTGAATT+TGG 0.163183 1_3:+62290151 Msa0131450:intron
CGTGATAGGTATTTATCTTT+AGG 0.203207 1_3:+62291341 Msa0131450:intron
AATTTCTTCAGGGACTAAAT+TGG 0.236045 1_3:-62285735 Msa0131440:five_prime_UTR
AACTGCATCAAGTCTGTCTT+TGG 0.298043 1_3:-62291434 None:intergenic
TTGTTCAAACCTGGCACTAA+TGG 0.301789 1_3:-62286224 None:intergenic
CTATTATGAATGAATGTTAT+AGG 0.303564 1_3:+62292527 Msa0131450:three_prime_UTR
TTCCATTGCCACAACACCTT+TGG 0.316717 1_3:+62289601 Msa0131450:CDS
GGGTGGAAGTTCAAATCTTT+TGG 0.319923 1_3:-62285880 None:intergenic
ATTGAGATTGAGAGGGATAA+GGG 0.335680 1_3:-62285665 Msa0131440:five_prime_UTR
AAAAGTATCTTATTTATAGA+AGG 0.336810 1_3:-62285776 None:intergenic
GCCAGCATAATGTGCAGTTC+TGG 0.337296 1_3:-62290193 None:intergenic
GATTGAGATTGAGAGGGATA+AGG 0.343169 1_3:-62285666 Msa0131440:five_prime_UTR
TCCATTGCCACAACACCTTT+GGG 0.350103 1_3:+62289602 Msa0131450:CDS
GTGAAAGATGGAAATTGTTA+TGG 0.363625 1_3:+62286181 Msa0131450:CDS
CCTTGTGTAATTTATTGATA+AGG 0.366311 1_3:+62292396 Msa0131450:three_prime_UTR
AGGAACCCCATGGGGATGTT+TGG 0.375805 1_3:+62292091 Msa0131450:CDS
AGAGCTTGCTTTATTGTTTG+TGG 0.399439 1_3:+62289195 Msa0131450:CDS
GAAGGTTCCCTCTCAATACT+TGG 0.417291 1_3:-62291800 None:intergenic
CAAATATTGCAGTGTTATCC+TGG 0.421176 1_3:+62290702 Msa0131450:intron
ATTCTTATTATGCAGTTGAT+GGG 0.426231 1_3:+62292251 Msa0131450:intron
TTCAGGAGCATGCATTCAAT+TGG 0.428017 1_3:+62288770 Msa0131450:CDS
CATTCAATTGGCTCATGGGC+AGG 0.436008 1_3:+62288782 Msa0131450:CDS
TTATCCTGGTGAAGATGATT+TGG 0.438610 1_3:+62290716 Msa0131450:CDS
GCATTAGATATCCTACATTC+AGG 0.445091 1_3:+62288753 Msa0131450:CDS
AAGTTAGCTGACCTCATTGA+AGG 0.458677 1_3:-62291822 None:intergenic
AAGATGATTTGGCCATTGCT+CGG 0.461655 1_3:+62290727 Msa0131450:CDS
TCCCAAAGGTGTTGTGGCAA+TGG 0.466290 1_3:-62289603 None:intergenic
TTGTGGAGACATTAGTGAAA+GGG 0.467547 1_3:+62289212 Msa0131450:CDS
TTCTTATTATGCAGTTGATG+GGG 0.472820 1_3:+62292252 Msa0131450:intron
TTGGAGAAAGTTGTGAAAGA+TGG 0.477287 1_3:+62286169 Msa0131450:CDS
TTTATCTTTAGGTAATTTGA+AGG 0.480180 1_3:+62291352 Msa0131450:CDS
CCTTATGATGATGAAACTCT+TGG 0.480823 1_3:+62289241 Msa0131450:CDS
CCAAGAGTTTCATCATCATA+AGG 0.481713 1_3:-62289241 None:intergenic
TAAAGCAAGCTCTGCTCCAC+AGG 0.489032 1_3:-62289185 None:intergenic
CATGCATTCAATTGGCTCAT+GGG 0.491039 1_3:+62288778 Msa0131450:CDS
TCCAGAACTGCACATTATGC+TGG 0.493532 1_3:+62290192 Msa0131450:CDS
GCATGCATTCAATTGGCTCA+TGG 0.494263 1_3:+62288777 Msa0131450:CDS
AGATGATTTGGCCATTGCTC+GGG 0.506175 1_3:+62290728 Msa0131450:CDS
TTTGGATCTCTGCCGCGCCA+TGG 0.511420 1_3:-62285862 None:intergenic
AATCTATGAAGGATTTCCTC+GGG 0.514937 1_3:+62289578 Msa0131450:CDS
AAAGAAGCAAACTGAATCTA+CGG 0.518329 1_3:+62291400 Msa0131450:CDS
TGTATAAATCCATTAGTGCC+AGG 0.523490 1_3:+62286215 Msa0131450:CDS
AAATCTATGAAGGATTTCCT+CGG 0.529293 1_3:+62289577 Msa0131450:CDS
CAGCAGCTTTCAGAAAACCT+TGG 0.536573 1_3:+62289639 Msa0131450:CDS
GATGTTTGGAGATATATTCA+AGG 0.542412 1_3:+62292105 Msa0131450:CDS
ATTATGAAACATACCACCTC+AGG 0.544326 1_3:-62290238 None:intergenic
TCTTATTATGCAGTTGATGG+GGG 0.561375 1_3:+62292253 Msa0131450:intron
TTTGTGGAGACATTAGTGAA+AGG 0.564199 1_3:+62289211 Msa0131450:CDS
TCAACATCCCAAAGGTGTTG+TGG 0.568924 1_3:-62289609 None:intergenic
CCTTAAAACAGCCCGAGCAA+TGG 0.579750 1_3:-62290739 None:intergenic
CCTTATCAATAAATTACACA+AGG 0.585126 1_3:-62292396 None:intergenic
TGAACTTCCACCCGCTGATG+AGG 0.586997 1_3:+62285890 Msa0131450:CDS
ATATCTCCAAACATCCCCAT+GGG 0.590014 1_3:-62292097 None:intergenic
GAATTTGGAACAAGTAGTAG+TGG 0.594161 1_3:+62290166 Msa0131450:CDS
ACTATAAACCAAGTATTGAG+AGG 0.595066 1_3:+62291792 Msa0131450:CDS
TATTTATCTAAGGTTACCTG+TGG 0.597462 1_3:+62289169 Msa0131450:intron
GAATGCATGCTCCTGAATGT+AGG 0.598781 1_3:-62288764 None:intergenic
TAGCTGACCTCATTGAAGGA+AGG 0.611327 1_3:-62291818 None:intergenic
TATATCTCCAAACATCCCCA+TGG 0.619960 1_3:-62292098 None:intergenic
GGTGATGAAATTTCTCTCCG+TGG 0.624798 1_3:-62285841 None:intergenic
ATGGCCAAATCATCTTCACC+AGG 0.631573 1_3:-62290720 None:intergenic
GAGGGAACCTTCCTTCAATG+AGG 0.640670 1_3:+62291811 Msa0131450:CDS
CTATAAACCAAGTATTGAGA+GGG 0.642760 1_3:+62291793 Msa0131450:CDS
GTACAACGAAGGAACCCCAT+GGG 0.645664 1_3:+62292082 Msa0131450:CDS
GAAGGATGCAAACATACTAG+TGG 0.647684 1_3:+62291370 Msa0131450:CDS
TTGGGTACCTCATCAGCGGG+TGG 0.656592 1_3:-62285897 None:intergenic
GCATGTCATCAACATCCCAA+AGG 0.666796 1_3:-62289617 None:intergenic
GAAATTTCATCACCATGGCG+CGG 0.669849 1_3:+62285850 Msa0131450:exon
CGTACAACGAAGGAACCCCA+TGG 0.672187 1_3:+62292081 Msa0131450:CDS
GGAGAGAAATTTCATCACCA+TGG 0.679546 1_3:+62285845 Msa0131450:exon
TGTTGTGGCAATGGAACCCG+AGG 0.681305 1_3:-62289594 None:intergenic
GCAGATATGTAACTGCTCAG+AGG 0.697282 1_3:+62288721 Msa0131450:intron
TACAACGAAGGAACCCCATG+GGG 0.720700 1_3:+62292083 Msa0131450:CDS
TATCTCCAAACATCCCCATG+GGG 0.753433 1_3:-62292096 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAATATTACAAAAATCTA+GGG - chr1_3:62287359-62287378 None:intergenic 10.0%
!! ATTAAAACTAAATGTAAATT+TGG - chr1_3:62289075-62289094 None:intergenic 10.0%
!! AGAAAAAATATAAAGTAAAA+AGG - chr1_3:62291719-62291738 None:intergenic 10.0%
!! AAATTGGAAATTAAAAAAAC+CGG - chr1_3:62285722-62285741 Msa0131440:five_prime_UTR 15.0%
!!! AAAAGTATCTTATTTATAGA+AGG - chr1_3:62285779-62285798 None:intergenic 15.0%
!! TAAAGAAGAAACAAAATTAA+TGG - chr1_3:62285933-62285952 None:intergenic 15.0%
!!! TTTATTTATTTTTGATGTAG+TGG + chr1_3:62285998-62286017 Msa0131450:intron 15.0%
!!! TTGATTGAAAATTAATTTTG+TGG + chr1_3:62286032-62286051 Msa0131450:intron 15.0%
!!! TGATTGAAAATTAATTTTGT+GGG + chr1_3:62286033-62286052 Msa0131450:intron 15.0%
!! TAACATATACCATTAAAAAA+AGG + chr1_3:62286787-62286806 Msa0131450:intron 15.0%
!! AACATATACCATTAAAAAAA+GGG + chr1_3:62286788-62286807 Msa0131450:intron 15.0%
!! TAAATGTAGAAAAAAAATCT+TGG - chr1_3:62286917-62286936 None:intergenic 15.0%
!! CATAAATATTACAAAAATCT+AGG - chr1_3:62287360-62287379 None:intergenic 15.0%
!! GCTTATAAATTATAATTATG+AGG - chr1_3:62288179-62288198 None:intergenic 15.0%
!!! TTTTATCTTCTATTTATCTA+AGG + chr1_3:62289159-62289178 Msa0131450:intron 15.0%
!!! TATTTGGAGTATATAATATT+TGG + chr1_3:62289492-62289511 Msa0131450:intron 15.0%
!! ATCATAACATAAATTATCTT+GGG - chr1_3:62290843-62290862 None:intergenic 15.0%
!! TATCATAACATAAATTATCT+TGG - chr1_3:62290844-62290863 None:intergenic 15.0%
!!! TCTTATGATTATTTTTCTAT+TGG + chr1_3:62291970-62291989 Msa0131450:intron 15.0%
!!! AAAAAAAGTGCTATAATTAT+TGG - chr1_3:62292340-62292359 None:intergenic 15.0%
!!! ATTAATGGATTGTAGATTTT+GGG - chr1_3:62285918-62285937 None:intergenic 20.0%
!!! AATTAATGGATTGTAGATTT+TGG - chr1_3:62285919-62285938 None:intergenic 20.0%
!!! TTCATTATTGTTTTTGTTTC+TGG + chr1_3:62286072-62286091 Msa0131450:intron 20.0%
!!! TCATTATTGTTTTTGTTTCT+GGG + chr1_3:62286073-62286092 Msa0131450:intron 20.0%
!!! TTGAGGTTTTTGATTAAATA+TGG + chr1_3:62286122-62286141 Msa0131450:intron 20.0%
!! ATAGTTTATTAGATTAACTC+AGG + chr1_3:62287203-62287222 Msa0131450:intron 20.0%
!!! AAATAGTTCAAACTCAATTT+TGG - chr1_3:62287921-62287940 None:intergenic 20.0%
!! AGCAAATAAAACAAAAACTA+AGG + chr1_3:62288060-62288079 Msa0131450:intron 20.0%
!!! AAAAGTATAGAAAAGTGAAA+TGG + chr1_3:62288372-62288391 Msa0131450:intron 20.0%
!! AACTAATTTACATCTCTAAT+AGG + chr1_3:62288492-62288511 Msa0131450:intron 20.0%
!!! TTTTATCAAGGAGTTTAAAA+AGG + chr1_3:62288550-62288569 Msa0131450:intron 20.0%
!! ACTACTGATAAATAATTGAA+GGG - chr1_3:62289289-62289308 None:intergenic 20.0%
!! AACTACTGATAAATAATTGA+AGG - chr1_3:62289290-62289309 None:intergenic 20.0%
!!! TGAACTCTGTATTTTTTTAA+GGG - chr1_3:62289846-62289865 None:intergenic 20.0%
!! AACCAAATATAAGAAAGTTA+GGG - chr1_3:62290489-62290508 None:intergenic 20.0%
!! AAAGTAAGACAAAAATTGTT+TGG - chr1_3:62290540-62290559 None:intergenic 20.0%
!!! TTACTTTTTATGCTAAAACT+TGG + chr1_3:62290553-62290572 Msa0131450:intron 20.0%
!! TGACAATATGTATAATATCA+GGG - chr1_3:62290810-62290829 None:intergenic 20.0%
!! ATGACAATATGTATAATATC+AGG - chr1_3:62290811-62290830 None:intergenic 20.0%
!! ATTATACATATTGTCATTCT+TGG + chr1_3:62290814-62290833 Msa0131450:intron 20.0%
!! AAATTTCATCCTAGTATAAA+TGG - chr1_3:62290876-62290895 None:intergenic 20.0%
!! TTTATCTTTAGGTAATTTGA+AGG + chr1_3:62291352-62291371 Msa0131450:CDS 20.0%
!!! TAATTTGTGTTCTAATCAAT+AGG + chr1_3:62291513-62291532 Msa0131450:intron 20.0%
!!! AGTAAAAAGGTATTGAATTA+AGG - chr1_3:62291706-62291725 None:intergenic 20.0%
!!! TTATATTTTTTCTTTGATGC+AGG + chr1_3:62291726-62291745 Msa0131450:intron 20.0%
!!! TTTATTTTCATCTTTGTTGT+TGG + chr1_3:62291864-62291883 Msa0131450:intron 20.0%
!! CAAATAAATCCACAAATATA+TGG + chr1_3:62291901-62291920 Msa0131450:intron 20.0%
!! ACAAATATACCATATATTTG+TGG - chr1_3:62291913-62291932 None:intergenic 20.0%
!!! ATAAGCAAATACTTTTGAAA+CGG - chr1_3:62292484-62292503 None:intergenic 20.0%
!! CTATTATGAATGAATGTTAT+AGG + chr1_3:62292527-62292546 Msa0131450:three_prime_UTR 20.0%
!! GAGAATTTTCAATTTCTTCA+GGG - chr1_3:62285748-62285767 Msa0131440:five_prime_UTR 25.0%
!! TGAGAATTTTCAATTTCTTC+AGG - chr1_3:62285749-62285768 Msa0131440:five_prime_UTR 25.0%
!! ATTTTTGATGTAGTGGTTTT+TGG + chr1_3:62286005-62286024 Msa0131450:intron 25.0%
! ATTGCAGAATGTTGAAAAAT+TGG + chr1_3:62286150-62286169 Msa0131450:intron 25.0%
! CAAGTTTATGTTATGTGTTT+GGG + chr1_3:62286268-62286287 Msa0131450:intron 25.0%
!!! TAACATGACCCTTTTTTTAA+TGG - chr1_3:62286799-62286818 None:intergenic 25.0%
!!! TGTGGGATTGTTTTTTTTAA+GGG - chr1_3:62286980-62286999 None:intergenic 25.0%
!!! TTGTGGGATTGTTTTTTTTA+AGG - chr1_3:62286981-62287000 None:intergenic 25.0%
! AGGAAAAAAGTTACGAATTT+GGG + chr1_3:62287223-62287242 Msa0131450:intron 25.0%
!! TGAACAATAGTAGTTTGTAT+TGG + chr1_3:62287265-62287284 Msa0131450:intron 25.0%
!!! ATTTATGTTCTTTTTTGAGC+TGG + chr1_3:62287373-62287392 Msa0131450:intron 25.0%
!! TTTCATGTAGTGTAAACTTT+TGG + chr1_3:62287405-62287424 Msa0131450:intron 25.0%
! TAACAACATACGATGTATAA+CGG - chr1_3:62287552-62287571 None:intergenic 25.0%
!! ATACATCGTATGTTGTTATT+TGG + chr1_3:62287554-62287573 Msa0131450:intron 25.0%
!!! TACATCGTATGTTGTTATTT+GGG + chr1_3:62287555-62287574 Msa0131450:intron 25.0%
! GTTTCGAAACTAAAATTACA+TGG - chr1_3:62288098-62288117 None:intergenic 25.0%
!! AAACAAAATTATGCTTTGGA+GGG - chr1_3:62288203-62288222 None:intergenic 25.0%
! ACAGAAACAAAATTATGCTT+TGG - chr1_3:62288207-62288226 None:intergenic 25.0%
!! TAGATTAGTTACAAGTTAGT+TGG - chr1_3:62288462-62288481 None:intergenic 25.0%
! AAAAACTCCACCAAAATTAA+TGG - chr1_3:62288531-62288550 None:intergenic 25.0%
! CAATTATAAGCACCTAATAA+CGG - chr1_3:62288622-62288641 None:intergenic 25.0%
! ATTTGGATAGAAATGTCAAA+AGG - chr1_3:62289058-62289077 None:intergenic 25.0%
! ATAATTGAAGGGTAAAAGAA+AGG - chr1_3:62289278-62289297 None:intergenic 25.0%
!!! GTTATTTTCTTTTTGTCCTA+TGG + chr1_3:62289338-62289357 Msa0131450:intron 25.0%
! AATCTCATGGGATTAAATTA+CGG - chr1_3:62289398-62289417 None:intergenic 25.0%
!!! ATCCCATGAGATTTTTAATT+TGG + chr1_3:62289405-62289424 Msa0131450:intron 25.0%
! CACCAAATTAAAAATCTCAT+GGG - chr1_3:62289410-62289429 None:intergenic 25.0%
! TCACCAAATTAAAAATCTCA+TGG - chr1_3:62289411-62289430 None:intergenic 25.0%
! CGTCTAAAAAAAATCTATGA+AGG + chr1_3:62289567-62289586 Msa0131450:CDS 25.0%
!!! CTGAACTCTGTATTTTTTTA+AGG - chr1_3:62289847-62289866 None:intergenic 25.0%
! TTAAATAAGTCTCTTTCAAG+TGG + chr1_3:62290035-62290054 Msa0131450:intron 25.0%
! TGTTTCATAATATTGCTTCT+AGG + chr1_3:62290250-62290269 Msa0131450:intron 25.0%
! GTTTCATAATATTGCTTCTA+GGG + chr1_3:62290251-62290270 Msa0131450:intron 25.0%
!! TTCTACACTATTGAACTTTT+TGG + chr1_3:62290451-62290470 Msa0131450:CDS 25.0%
!! TCTACACTATTGAACTTTTT+GGG + chr1_3:62290452-62290471 Msa0131450:CDS 25.0%
! ACCAAATATAAGAAAGTTAG+GGG - chr1_3:62290488-62290507 None:intergenic 25.0%
! GAACCAAATATAAGAAAGTT+AGG - chr1_3:62290490-62290509 None:intergenic 25.0%
! AACTTTACAAAATTCTGTTG+AGG + chr1_3:62290510-62290529 Msa0131450:intron 25.0%
! CATTATTCATTCTGTATTTG+TGG + chr1_3:62290644-62290663 Msa0131450:intron 25.0%
!! TGAGAACATAATTTTCACTT+TGG + chr1_3:62290780-62290799 Msa0131450:intron 25.0%
!! GAGAACATAATTTTCACTTT+GGG + chr1_3:62290781-62290800 Msa0131450:intron 25.0%
! CCTAGTATAAATGGTTATTT+AGG - chr1_3:62290867-62290886 None:intergenic 25.0%
! CCTAAATAACCATTTATACT+AGG + chr1_3:62290864-62290883 Msa0131450:intron 25.0%
!! TTTAAAATCCTTGTGTTCTT+TGG + chr1_3:62291246-62291265 Msa0131450:intron 25.0%
! TATTCTTATTATGCAGTTGA+TGG + chr1_3:62292250-62292269 Msa0131450:intron 25.0%
! ATTCTTATTATGCAGTTGAT+GGG + chr1_3:62292251-62292270 Msa0131450:intron 25.0%
! CCTTATCAATAAATTACACA+AGG - chr1_3:62292399-62292418 None:intergenic 25.0%
! CCTTGTGTAATTTATTGATA+AGG + chr1_3:62292396-62292415 Msa0131450:three_prime_UTR 25.0%
!!! TAAGCAAATACTTTTGAAAC+GGG - chr1_3:62292483-62292502 None:intergenic 25.0%
! ATGAATGTTATAGGCAAAAA+AGG + chr1_3:62292536-62292555 Msa0131450:three_prime_UTR 25.0%
!!! TTTTGAGATTGAGATTGAGA+GGG - chr1_3:62285675-62285694 Msa0131440:five_prime_UTR 30.0%
!! TTAACACGTTGTTTTATCAC+CGG + chr1_3:62285700-62285719 Msa0131450:five_prime_UTR 30.0%
AATTTCTTCAGGGACTAAAT+TGG - chr1_3:62285738-62285757 Msa0131440:five_prime_UTR 30.0%
! TGTTGTTGTTGTTATTGTTG+AGG + chr1_3:62286105-62286124 Msa0131450:intron 30.0%
GTGAAAGATGGAAATTGTTA+TGG + chr1_3:62286181-62286200 Msa0131450:CDS 30.0%
AACAAGAAATTGTTCAAACC+TGG - chr1_3:62286236-62286255 None:intergenic 30.0%
CCAAACACATAACATAAACT+TGG - chr1_3:62286270-62286289 None:intergenic 30.0%
CCAAGTTTATGTTATGTGTT+TGG + chr1_3:62286267-62286286 Msa0131450:intron 30.0%
AAATGTAGAAAGTCTAGCAT+TGG + chr1_3:62286324-62286343 Msa0131450:intron 30.0%
! TTTTTGTTCTCGAAAGAATG+AGG + chr1_3:62286430-62286449 Msa0131450:intron 30.0%
! TTTTGTTCTCGAAAGAATGA+GGG + chr1_3:62286431-62286450 Msa0131450:intron 30.0%
TAATATTTACTCCTTCGTCT+GGG - chr1_3:62286750-62286769 None:intergenic 30.0%
TTAATATTTACTCCTTCGTC+TGG - chr1_3:62286751-62286770 None:intergenic 30.0%
ACAAGTTAAGGAGCTTAAAA+TGG + chr1_3:62286832-62286851 Msa0131450:intron 30.0%
CAGATGAAAGGAAATAACTA+TGG - chr1_3:62287176-62287195 None:intergenic 30.0%
CAGGAAAAAAGTTACGAATT+TGG + chr1_3:62287222-62287241 Msa0131450:intron 30.0%
GGAAAAAAGTTACGAATTTG+GGG + chr1_3:62287224-62287243 Msa0131450:intron 30.0%
! ACAATAGTAGTTTGTATTGG+TGG + chr1_3:62287268-62287287 Msa0131450:intron 30.0%
!! GTGTAAACTTTTGGAAACTT+TGG + chr1_3:62287414-62287433 Msa0131450:intron 30.0%
!! TTATAGGAGGTATTTCCTTA+TGG + chr1_3:62287448-62287467 Msa0131450:intron 30.0%
ATTTCCTTATGGACAATGTT+AGG + chr1_3:62287459-62287478 Msa0131450:intron 30.0%
!! TGGAGTATTTTCTTATGAAC+CGG + chr1_3:62287486-62287505 Msa0131450:intron 30.0%
!! ACATCGTATGTTGTTATTTG+GGG + chr1_3:62287556-62287575 Msa0131450:intron 30.0%
ACAGTTAAAAAAGTGAAGCT+TGG - chr1_3:62287618-62287637 None:intergenic 30.0%
TGATCTAACATAACTGTAGT+GGG - chr1_3:62287655-62287674 None:intergenic 30.0%
ATGATCTAACATAACTGTAG+TGG - chr1_3:62287656-62287675 None:intergenic 30.0%
GATGATGTTAGTATTACAAG+TGG - chr1_3:62287826-62287845 None:intergenic 30.0%
GTCATTTCAATCATCATCAA+GGG - chr1_3:62287848-62287867 None:intergenic 30.0%
! TGTCATTTCAATCATCATCA+AGG - chr1_3:62287849-62287868 None:intergenic 30.0%
CGAACTAGGTTATATAGATA+CGG - chr1_3:62287879-62287898 None:intergenic 30.0%
GAAACAAAATTATGCTTTGG+AGG - chr1_3:62288204-62288223 None:intergenic 30.0%
TGTGATGTATTAGAAGATGA+AGG + chr1_3:62288224-62288243 Msa0131450:intron 30.0%
GTGATGTATTAGAAGATGAA+GGG + chr1_3:62288225-62288244 Msa0131450:intron 30.0%
ATAAATTGAAACAGTGCCAA+AGG + chr1_3:62288301-62288320 Msa0131450:intron 30.0%
TAAATTGAAACAGTGCCAAA+GGG + chr1_3:62288302-62288321 Msa0131450:intron 30.0%
TACATCTCTAATAGGTATAG+AGG + chr1_3:62288500-62288519 Msa0131450:intron 30.0%
ACATCTCTAATAGGTATAGA+GGG + chr1_3:62288501-62288520 Msa0131450:intron 30.0%
!! AGAGGGTATACCATTAATTT+TGG + chr1_3:62288518-62288537 Msa0131450:intron 30.0%
!!! TGGTGGAGTTTTTTTTATCA+AGG + chr1_3:62288538-62288557 Msa0131450:intron 30.0%
CGTTATTAGGTGCTTATAAT+TGG + chr1_3:62288620-62288639 Msa0131450:intron 30.0%
ATGATCTTTATTAGCCATGT+AGG + chr1_3:62288856-62288875 Msa0131450:intron 30.0%
AACTAACAATTTCTCCTACA+TGG - chr1_3:62288873-62288892 None:intergenic 30.0%
!! GCTAAAAGTTACTTGCTTTT+AGG + chr1_3:62288968-62288987 Msa0131450:intron 30.0%
AAAAAGTGATCAAGAGAGAA+AGG + chr1_3:62289006-62289025 Msa0131450:intron 30.0%
TAGAAATGTCAAAAGGATTC+AGG - chr1_3:62289051-62289070 None:intergenic 30.0%
! TATTTATCTAAGGTTACCTG+TGG + chr1_3:62289169-62289188 Msa0131450:intron 30.0%
AAATCTATGAAGGATTTCCT+CGG + chr1_3:62289577-62289596 Msa0131450:CDS 30.0%
!!! CTCTGTATTTTTTTAAGGGT+CGG - chr1_3:62289842-62289861 None:intergenic 30.0%
GCTGTGTTATAGATATCAAA+AGG - chr1_3:62289892-62289911 None:intergenic 30.0%
AAATTGAACTTCTACAAGCT+TGG - chr1_3:62289936-62289955 None:intergenic 30.0%
AGCTTGTAGAAGTTCAATTT+AGG + chr1_3:62289936-62289955 Msa0131450:intron 30.0%
!! TTAGGCTTTGTAACTTTTGT+TGG + chr1_3:62289954-62289973 Msa0131450:intron 30.0%
TCATTCGTTTACACAAACAA+AGG - chr1_3:62290354-62290373 None:intergenic 30.0%
!!! ACAATTTGCTTTTTACATGC+AGG + chr1_3:62290373-62290392 Msa0131450:intron 30.0%
CCAAATATAAGAAAGTTAGG+GGG - chr1_3:62290487-62290506 None:intergenic 30.0%
CTATTCGTCAAACTAAATTC+TGG + chr1_3:62290611-62290630 Msa0131450:intron 30.0%
!! AACTAAATTCTGGAGTTAAC+TGG + chr1_3:62290621-62290640 Msa0131450:intron 30.0%
!!! TATTTGTGGCATGGTTTTTT+TGG + chr1_3:62290658-62290677 Msa0131450:intron 30.0%
!!! TTTCTGAATGCTTTTTCACT+CGG + chr1_3:62290958-62290977 Msa0131450:intron 30.0%
CGTGATAGGTATTTATCTTT+AGG + chr1_3:62291341-62291360 Msa0131450:intron 30.0%
AAAGAAGCAAACTGAATCTA+CGG + chr1_3:62291400-62291419 Msa0131450:CDS 30.0%
!! TATGGCTTTATTTCTTAGAG+TGG + chr1_3:62291656-62291675 Msa0131450:intron 30.0%
!! ATGGCTTTATTTCTTAGAGT+GGG + chr1_3:62291657-62291676 Msa0131450:intron 30.0%
!!! ATTTTTTCTTTGATGCAGGA+TGG + chr1_3:62291730-62291749 Msa0131450:intron 30.0%
GCTCTCAACATATTAAAAAG+TGG - chr1_3:62291770-62291789 None:intergenic 30.0%
!! ACTATAAACCAAGTATTGAG+AGG + chr1_3:62291792-62291811 Msa0131450:CDS 30.0%
!! CTATAAACCAAGTATTGAGA+GGG + chr1_3:62291793-62291812 Msa0131450:CDS 30.0%
!!! TTTTCATCTTTGTTGTTGGT+AGG + chr1_3:62291868-62291887 Msa0131450:intron 30.0%
GATGTTTGGAGATATATTCA+AGG + chr1_3:62292105-62292124 Msa0131450:CDS 30.0%
! TTCTTATTATGCAGTTGATG+GGG + chr1_3:62292252-62292271 Msa0131450:intron 30.0%
!!! GTTTTGAGATTGAGATTGAG+AGG - chr1_3:62285676-62285695 Msa0131440:five_prime_UTR 35.0%
TTGGAGAAAGTTGTGAAAGA+TGG + chr1_3:62286169-62286188 Msa0131450:CDS 35.0%
TGTATAAATCCATTAGTGCC+AGG + chr1_3:62286215-62286234 Msa0131450:CDS 35.0%
TTTGGGAAATGTTAACCAGT+GGG + chr1_3:62286285-62286304 Msa0131450:intron 35.0%
! TTTTACCTTAACCAGTGTAC+TGG + chr1_3:62286400-62286419 Msa0131450:intron 35.0%
AAAACACATAACCAGTACAC+TGG - chr1_3:62286414-62286433 None:intergenic 35.0%
AAGAATGTATTTCCTACCCT+AGG + chr1_3:62286493-62286512 Msa0131450:intron 35.0%
AGAATGTATTTCCTACCCTA+GGG + chr1_3:62286494-62286513 Msa0131450:intron 35.0%
! AGGTTTTTACAATAGACCAG+AGG - chr1_3:62286628-62286647 None:intergenic 35.0%
! TGCTTTGAGCTAAAGGTTAA+AGG + chr1_3:62286702-62286721 Msa0131450:intron 35.0%
!!! CTTTTTAACTTATGCCCCAA+GGG + chr1_3:62286939-62286958 Msa0131450:intron 35.0%
!! AAATGTTAACTTGTGCCCTT+GGG - chr1_3:62286957-62286976 None:intergenic 35.0%
AAGAATAGAGCTGTACAGTA+CGG - chr1_3:62287077-62287096 None:intergenic 35.0%
ACTATGTACTTGCAGATGAA+AGG - chr1_3:62287188-62287207 None:intergenic 35.0%
AAAAAGTTACGAATTTGGGG+TGG + chr1_3:62287227-62287246 Msa0131450:intron 35.0%
TTTGGTGAATGCTGAGTTAT+AGG + chr1_3:62287432-62287451 Msa0131450:intron 35.0%
AAGTCCTAACATTGTCCATA+AGG - chr1_3:62287466-62287485 None:intergenic 35.0%
TATGGACAATGTTAGGACTT+TGG + chr1_3:62287466-62287485 Msa0131450:intron 35.0%
!! ATGAACCGGTTTAGAGTTTT+TGG + chr1_3:62287500-62287519 Msa0131450:intron 35.0%
! TGTTATTTGGGGCAAATTCT+AGG + chr1_3:62287567-62287586 Msa0131450:intron 35.0%
! GTTATTTGGGGCAAATTCTA+GGG + chr1_3:62287568-62287587 Msa0131450:intron 35.0%
AGGTTATATAGATACGGTAG+CGG - chr1_3:62287873-62287892 None:intergenic 35.0%
ATCTATATAACCTAGTTCGC+TGG + chr1_3:62287880-62287899 Msa0131450:intron 35.0%
ACAGTCACATGCAAAACAAA+TGG + chr1_3:62287969-62287988 Msa0131450:intron 35.0%
!! TACAATTTGACTTGTGGTCT+TGG - chr1_3:62288156-62288175 None:intergenic 35.0%
!! ATGAGGTACAATTTGACTTG+TGG - chr1_3:62288162-62288181 None:intergenic 35.0%
AAATTGAAACAGTGCCAAAG+GGG + chr1_3:62288303-62288322 Msa0131450:intron 35.0%
! GGGTATACCATTAATTTTGG+TGG + chr1_3:62288521-62288540 Msa0131450:intron 35.0%
AGACCTATGCAATTTATGCA+CGG + chr1_3:62288587-62288606 Msa0131450:intron 35.0%
GCATTAGATATCCTACATTC+AGG + chr1_3:62288753-62288772 Msa0131450:CDS 35.0%
TTCATTGTTGCCTTATGACT+TGG + chr1_3:62288895-62288914 Msa0131450:intron 35.0%
! AAGCTATCTGGTACATTTTC+TGG + chr1_3:62288925-62288944 Msa0131450:intron 35.0%
! AGCTATCTGGTACATTTTCT+GGG + chr1_3:62288926-62288945 Msa0131450:intron 35.0%
! TTTTAGCAACCTATGCTTTC+AGG - chr1_3:62288955-62288974 None:intergenic 35.0%
! AGAGCTTGCTTTATTGTTTG+TGG + chr1_3:62289195-62289214 Msa0131450:CDS 35.0%
TTTGTGGAGACATTAGTGAA+AGG + chr1_3:62289211-62289230 Msa0131450:CDS 35.0%
TTGTGGAGACATTAGTGAAA+GGG + chr1_3:62289212-62289231 Msa0131450:CDS 35.0%
CCAAGAGTTTCATCATCATA+AGG - chr1_3:62289244-62289263 None:intergenic 35.0%
! CCTTATGATGATGAAACTCT+TGG + chr1_3:62289241-62289260 Msa0131450:CDS 35.0%
! AATAACTTGCATTGCATCAC+AGG - chr1_3:62289324-62289343 None:intergenic 35.0%
!! AAGTGTTCTAAAGTGACCAT+AGG - chr1_3:62289357-62289376 None:intergenic 35.0%
AATCTATGAAGGATTTCCTC+GGG + chr1_3:62289578-62289597 Msa0131450:CDS 35.0%
!! GATAGCAGCTTTTAAGAATG+AGG - chr1_3:62289694-62289713 None:intergenic 35.0%
ATACAACACTCAACAAACGA+GGG - chr1_3:62289772-62289791 None:intergenic 35.0%
! TAAGTCTCTTTCAAGTGGTA+TGG + chr1_3:62290040-62290059 Msa0131450:intron 35.0%
GTACCTCTTAGCAATATTTC+TGG + chr1_3:62290112-62290131 Msa0131450:intron 35.0%
AAGCCAGAAATATTGCTAAG+AGG - chr1_3:62290118-62290137 None:intergenic 35.0%
! GAATTTGGAACAAGTAGTAG+TGG + chr1_3:62290166-62290185 Msa0131450:CDS 35.0%
!! CATATTTTCTGAAAGTCCTG+AGG + chr1_3:62290222-62290241 Msa0131450:CDS 35.0%
ATTATGAAACATACCACCTC+AGG - chr1_3:62290241-62290260 None:intergenic 35.0%
TGAATTCAAGAGAAGCAACA+AGG - chr1_3:62290283-62290302 None:intergenic 35.0%
!! ACTATTGAACTTTTTGGGCA+AGG + chr1_3:62290457-62290476 Msa0131450:CDS 35.0%
CCCCCTAACTTTCTTATATT+TGG + chr1_3:62290484-62290503 Msa0131450:intron 35.0%
TTCATTCTGTATTTGTGGCA+TGG + chr1_3:62290649-62290668 Msa0131450:intron 35.0%
CAAATATTGCAGTGTTATCC+TGG + chr1_3:62290702-62290721 Msa0131450:intron 35.0%
TTATCCTGGTGAAGATGATT+TGG + chr1_3:62290716-62290735 Msa0131450:CDS 35.0%
AGATCTGCTTTCTCGTAATA+TGG + chr1_3:62291126-62291145 Msa0131450:intron 35.0%
TTCCATGCATATGTCAACAA+AGG + chr1_3:62291289-62291308 Msa0131450:intron 35.0%
AACCTTTGTTGACATATGCA+TGG - chr1_3:62291294-62291313 None:intergenic 35.0%
TCTGGTAACAGATGAGATTA+AGG - chr1_3:62291582-62291601 None:intergenic 35.0%
!! TCTTATTATGCAGTTGATGG+GGG + chr1_3:62292253-62292272 Msa0131450:intron 35.0%
! TCCCTCTTTTGCAAAATCCA+CGG + chr1_3:62285824-62285843 Msa0131450:five_prime_UTR 40.0%
! TCCGTGGATTTTGCAAAAGA+GGG - chr1_3:62285828-62285847 None:intergenic 40.0%
GGAGAGAAATTTCATCACCA+TGG + chr1_3:62285845-62285864 Msa0131450:exon 40.0%
! GGGTGGAAGTTCAAATCTTT+TGG - chr1_3:62285883-62285902 None:intergenic 40.0%
TTGTTCAAACCTGGCACTAA+TGG - chr1_3:62286227-62286246 None:intergenic 40.0%
GTTTGGGAAATGTTAACCAG+TGG + chr1_3:62286284-62286303 Msa0131450:intron 40.0%
! CATAACCAGTACACTGGTTA+AGG - chr1_3:62286408-62286427 None:intergenic 40.0%
CTAAAGGTTAAAGGAGTTCG+AGG + chr1_3:62286711-62286730 Msa0131450:intron 40.0%
CCTTGGGGCATAAGTTAAAA+AGG - chr1_3:62286941-62286960 None:intergenic 40.0%
!!! CCTTTTTAACTTATGCCCCA+AGG + chr1_3:62286938-62286957 Msa0131450:intron 40.0%
!! AATGTTAACTTGTGCCCTTG+GGG - chr1_3:62286956-62286975 None:intergenic 40.0%
!! GAAATGTTAACTTGTGCCCT+TGG - chr1_3:62286958-62286977 None:intergenic 40.0%
!! AACCGGTTTAGAGTTTTTGG+AGG + chr1_3:62287503-62287522 Msa0131450:intron 40.0%
TGCCTCCAAAAACTCTAAAC+CGG - chr1_3:62287508-62287527 None:intergenic 40.0%
! TTTGGAGGCATGAAAAATGC+AGG + chr1_3:62287518-62287537 Msa0131450:intron 40.0%
! TTGGAGGCATGAAAAATGCA+GGG + chr1_3:62287519-62287538 Msa0131450:intron 40.0%
AGTGGACAGTGAATCGTAAA+GGG - chr1_3:62287808-62287827 None:intergenic 40.0%
AAGTGGACAGTGAATCGTAA+AGG - chr1_3:62287809-62287828 None:intergenic 40.0%
GGTTATATAGATACGGTAGC+GGG - chr1_3:62287872-62287891 None:intergenic 40.0%
GTGAATATTACCAGCGAACT+AGG - chr1_3:62287893-62287912 None:intergenic 40.0%
CTACCGTGCATAAATTGCAT+AGG - chr1_3:62288593-62288612 None:intergenic 40.0%
! TTCAGGAGCATGCATTCAAT+TGG + chr1_3:62288770-62288789 Msa0131450:CDS 40.0%
! CATGCATTCAATTGGCTCAT+GGG + chr1_3:62288778-62288797 Msa0131450:CDS 40.0%
! TTGTTGCCTTATGACTTGGA+TGG + chr1_3:62288899-62288918 Msa0131450:intron 40.0%
CTTTGTCCATCCAAGTCATA+AGG - chr1_3:62288908-62288927 None:intergenic 40.0%
GTGATCAAGAGAGAAAGGAA+AGG + chr1_3:62289011-62289030 Msa0131450:intron 40.0%
! AGAGAAAGGAAAGGCACAAA+TGG + chr1_3:62289020-62289039 Msa0131450:intron 40.0%
CATACAACACTCAACAAACG+AGG - chr1_3:62289773-62289792 None:intergenic 40.0%
! CTCGTTTGTTGAGTGTTGTA+TGG + chr1_3:62289771-62289790 Msa0131450:intron 40.0%
GCATACCACTCACTTGTAAA+AGG - chr1_3:62290068-62290087 None:intergenic 40.0%
!!! GCTTTGCTGCTATTTTATCC+AGG + chr1_3:62290134-62290153 Msa0131450:intron 40.0%
!!! TTGCTGCTATTTTATCCAGG+TGG + chr1_3:62290137-62290156 Msa0131450:intron 40.0%
!! ATTTTCTGAAAGTCCTGAGG+TGG + chr1_3:62290225-62290244 Msa0131450:CDS 40.0%
! GTGACGTATCATTTTGTGAG+AGG + chr1_3:62290407-62290426 Msa0131450:CDS 40.0%
!!! TGTGGCATGGTTTTTTTGGA+AGG + chr1_3:62290662-62290681 Msa0131450:intron 40.0%
! AAGATGATTTGGCCATTGCT+CGG + chr1_3:62290727-62290746 Msa0131450:CDS 40.0%
AATGCTTCCTGTTCAGATCA+TGG + chr1_3:62291039-62291058 Msa0131450:intron 40.0%
TTGCATTCCATGATCTGAAC+AGG - chr1_3:62291049-62291068 None:intergenic 40.0%
CGCTAAACGGAATTAGTGAA+GGG - chr1_3:62291174-62291193 None:intergenic 40.0%
CCTTCACTAATTCCGTTTAG+CGG + chr1_3:62291172-62291191 Msa0131450:intron 40.0%
CTTCACTAATTCCGTTTAGC+GGG + chr1_3:62291173-62291192 Msa0131450:intron 40.0%
! AATTCCGTTTAGCGGGTATA+AGG + chr1_3:62291180-62291199 Msa0131450:intron 40.0%
! ATTCCGTTTAGCGGGTATAA+GGG + chr1_3:62291181-62291200 Msa0131450:intron 40.0%
! GCACTCATCATCTGTTTTCT+GGG + chr1_3:62291203-62291222 Msa0131450:intron 40.0%
GACATCAACCAAAGAACACA+AGG - chr1_3:62291257-62291276 None:intergenic 40.0%
TTGCTCATTTCTTGCGTGAT+AGG + chr1_3:62291327-62291346 Msa0131450:intron 40.0%
GAAGGATGCAAACATACTAG+TGG + chr1_3:62291370-62291389 Msa0131450:CDS 40.0%
AACTGCATCAAGTCTGTCTT+TGG - chr1_3:62291437-62291456 None:intergenic 40.0%
TGAAGGGAAGTTCTTGTATC+TGG - chr1_3:62291600-62291619 None:intergenic 40.0%
AAGTTAGCTGACCTCATTGA+AGG - chr1_3:62291825-62291844 None:intergenic 40.0%
! GAGATTGCGCAGAAGTTTTA+TGG + chr1_3:62292058-62292077 Msa0131450:CDS 40.0%
!! AGTTTTATGGCGTACAACGA+AGG + chr1_3:62292071-62292090 Msa0131450:CDS 40.0%
ATATCTCCAAACATCCCCAT+GGG - chr1_3:62292100-62292119 None:intergenic 40.0%
TATATCTCCAAACATCCCCA+TGG - chr1_3:62292101-62292120 None:intergenic 40.0%
! CTCCGTGGATTTTGCAAAAG+AGG - chr1_3:62285829-62285848 None:intergenic 45.0%
GGTGATGAAATTTCTCTCCG+TGG - chr1_3:62285844-62285863 None:intergenic 45.0%
GAAATTTCATCACCATGGCG+CGG + chr1_3:62285850-62285869 Msa0131450:exon 45.0%
!! ATTTTGGGTACCTCATCAGC+GGG - chr1_3:62285903-62285922 None:intergenic 45.0%
!! GATTTTGGGTACCTCATCAG+CGG - chr1_3:62285904-62285923 None:intergenic 45.0%
AAATGTTAACCAGTGGGCAC+TGG + chr1_3:62286291-62286310 Msa0131450:intron 45.0%
TTCTCGAAAGAATGAGGGAG+TGG + chr1_3:62286436-62286455 Msa0131450:intron 45.0%
! GAGTGGTGGCATAGGATTTT+TGG + chr1_3:62286453-62286472 Msa0131450:intron 45.0%
AAAGGAGGTCATAGTCCCTA+GGG - chr1_3:62286512-62286531 None:intergenic 45.0%
AAAAGGAGGTCATAGTCCCT+AGG - chr1_3:62286513-62286532 None:intergenic 45.0%
!! CTAGGAGGGAGCACTATAAA+AGG - chr1_3:62286530-62286549 None:intergenic 45.0%
AAAACCTGATGCCTGTGCTT+TGG + chr1_3:62286641-62286660 Msa0131450:intron 45.0%
AAACCTGATGCCTGTGCTTT+GGG + chr1_3:62286642-62286661 Msa0131450:intron 45.0%
! GCTCAACTGCTTTGAGCTAA+AGG + chr1_3:62286695-62286714 Msa0131450:intron 45.0%
TTAAAGGAGTTCGAGGTCGT+GGG + chr1_3:62286718-62286737 Msa0131450:intron 45.0%
!! AGGGTCATGTTAACTTGTGC+CGG + chr1_3:62286807-62286826 Msa0131450:intron 45.0%
!! TAAGCTCCTTAACTTGTGCC+CGG - chr1_3:62286829-62286848 None:intergenic 45.0%
!! AAAGGTGCTCTGATAGTCCA+TGG + chr1_3:62287039-62287058 Msa0131450:intron 45.0%
! AAGGTGCTCTGATAGTCCAT+GGG + chr1_3:62287040-62287059 Msa0131450:intron 45.0%
TAGAGCTGTACAGTACGGTA+GGG - chr1_3:62287072-62287091 None:intergenic 45.0%
ATAGAGCTGTACAGTACGGT+AGG - chr1_3:62287073-62287092 None:intergenic 45.0%
GGTGAATGCTGAGTTATAGG+AGG + chr1_3:62287435-62287454 Msa0131450:intron 45.0%
!!! TTTCTGGGTTTTGGAGCGAA+GGG - chr1_3:62287690-62287709 None:intergenic 45.0%
ACAGTAGTAGATGGTCACGA+CGG - chr1_3:62287713-62287732 None:intergenic 45.0%
!! ATGAATGGTGGGTCTTTGGT+TGG - chr1_3:62287760-62287779 None:intergenic 45.0%
!! TTGGATGAATGGTGGGTCTT+TGG - chr1_3:62287764-62287783 None:intergenic 45.0%
CAGCAGATTGGATGAATGGT+GGG - chr1_3:62287771-62287790 None:intergenic 45.0%
ATGGCAGCAGATTGGATGAA+TGG - chr1_3:62287775-62287794 None:intergenic 45.0%
AGTGAATCGTAAAGGGGGTA+GGG - chr1_3:62287801-62287820 None:intergenic 45.0%
TGGACAGTGAATCGTAAAGG+GGG - chr1_3:62287806-62287825 None:intergenic 45.0%
GTGGACAGTGAATCGTAAAG+GGG - chr1_3:62287807-62287826 None:intergenic 45.0%
AGAAGATGAAGGGCTTGATG+TGG + chr1_3:62288235-62288254 Msa0131450:intron 45.0%
TATCTTTCCTCTCTCCCCTT+TGG - chr1_3:62288320-62288339 None:intergenic 45.0%
CGGTAGAAAGAGCCGTTATT+AGG + chr1_3:62288607-62288626 Msa0131450:intron 45.0%
GCAGATATGTAACTGCTCAG+AGG + chr1_3:62288721-62288740 Msa0131450:intron 45.0%
GAATGCATGCTCCTGAATGT+AGG - chr1_3:62288767-62288786 None:intergenic 45.0%
! GCATGCATTCAATTGGCTCA+TGG + chr1_3:62288777-62288796 Msa0131450:CDS 45.0%
CTTGGATGGACAAAGCTATC+TGG + chr1_3:62288913-62288932 Msa0131450:intron 45.0%
! GAAAGGAAAGGCACAAATGG+AGG + chr1_3:62289023-62289042 Msa0131450:intron 45.0%
TTCCATTGCCACAACACCTT+TGG + chr1_3:62289601-62289620 Msa0131450:CDS 45.0%
TCCATTGCCACAACACCTTT+GGG + chr1_3:62289602-62289621 Msa0131450:CDS 45.0%
!! TCAACATCCCAAAGGTGTTG+TGG - chr1_3:62289612-62289631 None:intergenic 45.0%
GCATGTCATCAACATCCCAA+AGG - chr1_3:62289620-62289639 None:intergenic 45.0%
CAGCAGCTTTCAGAAAACCT+TGG + chr1_3:62289639-62289658 Msa0131450:CDS 45.0%
! TGGAGCCTTTTACAAGTGAG+TGG + chr1_3:62290060-62290079 Msa0131450:intron 45.0%
TCCAGAACTGCACATTATGC+TGG + chr1_3:62290192-62290211 Msa0131450:CDS 45.0%
ATGGCCAAATCATCTTCACC+AGG - chr1_3:62290723-62290742 None:intergenic 45.0%
! AGATGATTTGGCCATTGCTC+GGG + chr1_3:62290728-62290747 Msa0131450:CDS 45.0%
CCGCTAAACGGAATTAGTGA+AGG - chr1_3:62291175-62291194 None:intergenic 45.0%
! GGCACTCATCATCTGTTTTC+TGG + chr1_3:62291202-62291221 Msa0131450:intron 45.0%
CAAGAACTTCCCTTCACTTC+TGG + chr1_3:62291604-62291623 Msa0131450:intron 45.0%
CACTTCACACCAGAAGTGAA+GGG - chr1_3:62291616-62291635 None:intergenic 45.0%
GAAGGTTCCCTCTCAATACT+TGG - chr1_3:62291803-62291822 None:intergenic 45.0%
TAGCTGACCTCATTGAAGGA+AGG - chr1_3:62291821-62291840 None:intergenic 45.0%
TATCTCCAAACATCCCCATG+GGG - chr1_3:62292099-62292118 None:intergenic 45.0%
!!! TTTTTTTTTATAATCTTATT+TGG + chr1_3:62289476-62289495 Msa0131450:intron 5.0%
!!! TAATTACTAATAAATTTTAA+TGG + chr1_3:62289539-62289558 Msa0131450:intron 5.0%
!!! ATAATTTTTATAAAATCATA+AGG + chr1_3:62289803-62289822 Msa0131450:intron 5.0%
!!! TTAATTATTTTAGAAATATA+TGG + chr1_3:62291638-62291657 Msa0131450:intron 5.0%
!! TAACCAGTGGGCACTGGTTA+AGG + chr1_3:62286297-62286316 Msa0131450:intron 50.0%
ATTCCTTAACCAGTGCCCAC+TGG - chr1_3:62286303-62286322 None:intergenic 50.0%
TCGAAAGAATGAGGGAGTGG+TGG + chr1_3:62286439-62286458 Msa0131450:intron 50.0%
!! GGAGGGAGCACTATAAAAGG+AGG - chr1_3:62286527-62286546 None:intergenic 50.0%
! TCCCTCCTAGAGCTTTTGGT+GGG + chr1_3:62286540-62286559 Msa0131450:intron 50.0%
!! ACCCACCAAAAGCTCTAGGA+GGG - chr1_3:62286544-62286563 None:intergenic 50.0%
!! TTTTGGTGGGTGCCTTCATG+TGG + chr1_3:62286553-62286572 Msa0131450:intron 50.0%
! TTTGGTGGGTGCCTTCATGT+GGG + chr1_3:62286554-62286573 Msa0131450:intron 50.0%
CTTACTGAGCGAGCACATCA+CGG - chr1_3:62286595-62286614 None:intergenic 50.0%
TGCTCGCTCAGTAAGCACTT+GGG + chr1_3:62286600-62286619 Msa0131450:intron 50.0%
AACCTGATGCCTGTGCTTTG+GGG + chr1_3:62286643-62286662 Msa0131450:intron 50.0%
GGGAGATCCCACGATACTAT+GGG + chr1_3:62286663-62286682 Msa0131450:intron 50.0%
GGAGATCCCACGATACTATG+GGG + chr1_3:62286664-62286683 Msa0131450:intron 50.0%
GAGATCCCACGATACTATGG+GGG + chr1_3:62286665-62286684 Msa0131450:intron 50.0%
GTTAAAGGAGTTCGAGGTCG+TGG + chr1_3:62286717-62286736 Msa0131450:intron 50.0%
! GTGGGTTAAAACCCAGACGA+AGG + chr1_3:62286736-62286755 Msa0131450:intron 50.0%
!! GGGTCATGTTAACTTGTGCC+GGG + chr1_3:62286808-62286827 Msa0131450:intron 50.0%
GGGGCTGTGTACAGTATTGT+GGG - chr1_3:62286997-62287016 None:intergenic 50.0%
! ATCAGAGCACCTTTGCCCTT+CGG - chr1_3:62287033-62287052 None:intergenic 50.0%
!! GGCAAATTCTAGGGTGCACA+AGG + chr1_3:62287577-62287596 Msa0131450:intron 50.0%
! CTAGGGTGCACAAGGTGTTT+AGG + chr1_3:62287585-62287604 Msa0131450:intron 50.0%
!!! TTCTGGGTTTTGGAGCGAAG+GGG - chr1_3:62287689-62287708 None:intergenic 50.0%
!!! GTTTCTGGGTTTTGGAGCGA+AGG - chr1_3:62287691-62287710 None:intergenic 50.0%
!! TCACGACGGTTTCTGGGTTT+TGG - chr1_3:62287699-62287718 None:intergenic 50.0%
AGATGGTCACGACGGTTTCT+GGG - chr1_3:62287705-62287724 None:intergenic 50.0%
TAGATGGTCACGACGGTTTC+TGG - chr1_3:62287706-62287725 None:intergenic 50.0%
GGTTCTGCGACAGTAGTAGA+TGG - chr1_3:62287722-62287741 None:intergenic 50.0%
!! AATGGTGGGTCTTTGGTTGG+AGG - chr1_3:62287757-62287776 None:intergenic 50.0%
GCAGCAGATTGGATGAATGG+TGG - chr1_3:62287772-62287791 None:intergenic 50.0%
GTGAATCGTAAAGGGGGTAG+GGG - chr1_3:62287800-62287819 None:intergenic 50.0%
CAGTGAATCGTAAAGGGGGT+AGG - chr1_3:62287802-62287821 None:intergenic 50.0%
AGATGAAGGGCTTGATGTGG+AGG + chr1_3:62288238-62288257 Msa0131450:intron 50.0%
! CATTCAATTGGCTCATGGGC+AGG + chr1_3:62288782-62288801 Msa0131450:CDS 50.0%
! TCTGGGACACCTGAAAGCAT+AGG + chr1_3:62288943-62288962 Msa0131450:intron 50.0%
TAAAGCAAGCTCTGCTCCAC+AGG - chr1_3:62289188-62289207 None:intergenic 50.0%
!! TCCCAAAGGTGTTGTGGCAA+TGG - chr1_3:62289606-62289625 None:intergenic 50.0%
TCCAGGTGGTCTGCTGAATT+TGG + chr1_3:62290151-62290170 Msa0131450:intron 50.0%
TCCAAATTCAGCAGACCACC+TGG - chr1_3:62290155-62290174 None:intergenic 50.0%
GCCAGCATAATGTGCAGTTC+TGG - chr1_3:62290196-62290215 None:intergenic 50.0%
CCTTAAAACAGCCCGAGCAA+TGG - chr1_3:62290742-62290761 None:intergenic 50.0%
!! CCATTGCTCGGGCTGTTTTA+AGG + chr1_3:62290739-62290758 Msa0131450:CDS 50.0%
GTGCCCTTATACCCGCTAAA+CGG - chr1_3:62291187-62291206 None:intergenic 50.0%
GCACTTCACACCAGAAGTGA+AGG - chr1_3:62291617-62291636 None:intergenic 50.0%
GAGGGAACCTTCCTTCAATG+AGG + chr1_3:62291811-62291830 Msa0131450:CDS 50.0%
GTACAACGAAGGAACCCCAT+GGG + chr1_3:62292082-62292101 Msa0131450:CDS 50.0%
TACAACGAAGGAACCCCATG+GGG + chr1_3:62292083-62292102 Msa0131450:CDS 50.0%
TGAACTTCCACCCGCTGATG+AGG + chr1_3:62285890-62285909 Msa0131450:CDS 55.0%
GAATGAGGGAGTGGTGGCAT+AGG + chr1_3:62286445-62286464 Msa0131450:intron 55.0%
GAGGTCATAGTCCCTAGGGT+AGG - chr1_3:62286508-62286527 None:intergenic 55.0%
! GTGCTCCCTCCTAGAGCTTT+TGG + chr1_3:62286536-62286555 Msa0131450:intron 55.0%
! CTCCCTCCTAGAGCTTTTGG+TGG + chr1_3:62286539-62286558 Msa0131450:intron 55.0%
!! CACCCACCAAAAGCTCTAGG+AGG - chr1_3:62286545-62286564 None:intergenic 55.0%
AGGCACCCACCAAAAGCTCT+AGG - chr1_3:62286548-62286567 None:intergenic 55.0%
CCTTCATGTGGGCAGACATC+CGG + chr1_3:62286565-62286584 Msa0131450:intron 55.0%
GTGCTCGCTCAGTAAGCACT+TGG + chr1_3:62286599-62286618 Msa0131450:intron 55.0%
AGTAAGCACTTGGGCTCCTC+TGG + chr1_3:62286609-62286628 Msa0131450:intron 55.0%
GGGGAGATCCCACGATACTA+TGG + chr1_3:62286662-62286681 Msa0131450:intron 55.0%
TCCCACGATACTATGGGGGT+TGG + chr1_3:62286669-62286688 Msa0131450:intron 55.0%
CCCAACCCCCATAGTATCGT+GGG - chr1_3:62286673-62286692 None:intergenic 55.0%
CCCACGATACTATGGGGGTT+GGG + chr1_3:62286670-62286689 Msa0131450:intron 55.0%
ACCCAACCCCCATAGTATCG+TGG - chr1_3:62286674-62286693 None:intergenic 55.0%
CTTGTGCCGGGCACAAGTTA+AGG + chr1_3:62286820-62286839 Msa0131450:intron 55.0%
GGGGGCTGTGTACAGTATTG+TGG - chr1_3:62286998-62287017 None:intergenic 55.0%
TACGGTAGGGTCAGTACCCA+TGG - chr1_3:62287059-62287078 None:intergenic 55.0%
GGTGGTCACTCAGAGTCAGA+AGG + chr1_3:62287286-62287305 Msa0131450:intron 55.0%
! GGTTGGAGGTGTAGTAGCTC+TGG - chr1_3:62287743-62287762 None:intergenic 55.0%
! TAGGGGTGATGGCAGCAGAT+TGG - chr1_3:62287783-62287802 None:intergenic 55.0%
TGAAGGGCTTGATGTGGAGG+TGG + chr1_3:62288241-62288260 Msa0131450:intron 55.0%
CTTGATGTGGAGGTGGAGGA+AGG + chr1_3:62288248-62288267 Msa0131450:intron 55.0%
GTGGAGGTGGAGGAAGGAAA+CGG + chr1_3:62288254-62288273 Msa0131450:intron 55.0%
AACAGTGCCAAAGGGGAGAG+AGG + chr1_3:62288310-62288329 Msa0131450:intron 55.0%
TGTTGTGGCAATGGAACCCG+AGG - chr1_3:62289597-62289616 None:intergenic 55.0%
CGTACAACGAAGGAACCCCA+TGG + chr1_3:62292081-62292100 Msa0131450:CDS 55.0%
AGGAACCCCATGGGGATGTT+TGG + chr1_3:62292091-62292110 Msa0131450:CDS 55.0%
TTTGGATCTCTGCCGCGCCA+TGG - chr1_3:62285865-62285884 None:intergenic 60.0%
TTGGGTACCTCATCAGCGGG+TGG - chr1_3:62285900-62285919 None:intergenic 60.0%
CCGGATGTCTGCCCACATGA+AGG - chr1_3:62286568-62286587 None:intergenic 60.0%
TCATGTGGGCAGACATCCGG+TGG + chr1_3:62286568-62286587 Msa0131450:intron 60.0%
CATGTGGGCAGACATCCGGT+GGG + chr1_3:62286569-62286588 Msa0131450:intron 60.0%
CTCCCCAAAGCACAGGCATC+AGG - chr1_3:62286648-62286667 None:intergenic 60.0%
GTGGGATCTCCCCAAAGCAC+AGG - chr1_3:62286655-62286674 None:intergenic 60.0%
CGTAAAGGGGGTAGGGGTGA+TGG - chr1_3:62287794-62287813 None:intergenic 60.0%
AGGGCTTGATGTGGAGGTGG+AGG + chr1_3:62288244-62288263 Msa0131450:intron 60.0%
GAGGTGGAGGAAGGAAACGG+CGG + chr1_3:62288257-62288276 Msa0131450:intron 60.0%
ACACAGCCCCCCAAGCGTCA+AGG + chr1_3:62287007-62287026 Msa0131450:intron 65.0%
CTTCGGCCTTGACGCTTGGG+GGG - chr1_3:62287016-62287035 None:intergenic 65.0%
CCTTCGGCCTTGACGCTTGG+GGG - chr1_3:62287017-62287036 None:intergenic 65.0%
CCCTTCGGCCTTGACGCTTG+GGG - chr1_3:62287018-62287037 None:intergenic 65.0%
CCCCAAGCGTCAAGGCCGAA+GGG + chr1_3:62287015-62287034 Msa0131450:intron 65.0%
GCCCTTCGGCCTTGACGCTT+GGG - chr1_3:62287019-62287038 None:intergenic 65.0%
TGCCCTTCGGCCTTGACGCT+TGG - chr1_3:62287020-62287039 None:intergenic 65.0%
GCGTCAAGGCCGAAGGGCAA+AGG + chr1_3:62287021-62287040 Msa0131450:intron 65.0%
GCGAGCACATCACGGCCCAC+CGG - chr1_3:62286587-62286606 None:intergenic 70.0%
CCCCCAAGCGTCAAGGCCGA+AGG + chr1_3:62287014-62287033 Msa0131450:intron 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 62285667 62292595 62285667 ID=Msa0131450;Name=Msa0131450
chr1_3 mRNA 62285667 62292595 62285667 ID=Msa0131450-mRNA-1;Parent=Msa0131450;Name=Msa0131450-mRNA-1;_AED=0.07;_eAED=0.07;_QI=197|1|1|1|1|1|12|312|323
chr1_3 exon 62285667 62285911 62285667 ID=Msa0131450-mRNA-1:exon:20742;Parent=Msa0131450-mRNA-1
chr1_3 exon 62286157 62286236 62286157 ID=Msa0131450-mRNA-1:exon:20743;Parent=Msa0131450-mRNA-1
chr1_3 exon 62288725 62288803 62288725 ID=Msa0131450-mRNA-1:exon:20744;Parent=Msa0131450-mRNA-1
chr1_3 exon 62289181 62289262 62289181 ID=Msa0131450-mRNA-1:exon:20745;Parent=Msa0131450-mRNA-1
chr1_3 exon 62289565 62289715 62289565 ID=Msa0131450-mRNA-1:exon:20746;Parent=Msa0131450-mRNA-1
chr1_3 exon 62290156 62290246 62290156 ID=Msa0131450-mRNA-1:exon:20747;Parent=Msa0131450-mRNA-1
chr1_3 exon 62290395 62290478 62290395 ID=Msa0131450-mRNA-1:exon:20748;Parent=Msa0131450-mRNA-1
chr1_3 exon 62290714 62290760 62290714 ID=Msa0131450-mRNA-1:exon:20749;Parent=Msa0131450-mRNA-1
chr1_3 exon 62291349 62291477 62291349 ID=Msa0131450-mRNA-1:exon:20750;Parent=Msa0131450-mRNA-1
chr1_3 exon 62291748 62291832 62291748 ID=Msa0131450-mRNA-1:exon:20751;Parent=Msa0131450-mRNA-1
chr1_3 exon 62292049 62292126 62292049 ID=Msa0131450-mRNA-1:exon:20752;Parent=Msa0131450-mRNA-1
chr1_3 exon 62292266 62292595 62292266 ID=Msa0131450-mRNA-1:exon:20753;Parent=Msa0131450-mRNA-1
chr1_3 five_prime_UTR 62285667 62285863 62285667 ID=Msa0131450-mRNA-1:five_prime_utr;Parent=Msa0131450-mRNA-1
chr1_3 CDS 62285864 62285911 62285864 ID=Msa0131450-mRNA-1:cds;Parent=Msa0131450-mRNA-1
chr1_3 CDS 62286157 62286236 62286157 ID=Msa0131450-mRNA-1:cds;Parent=Msa0131450-mRNA-1
chr1_3 CDS 62288725 62288803 62288725 ID=Msa0131450-mRNA-1:cds;Parent=Msa0131450-mRNA-1
chr1_3 CDS 62289181 62289262 62289181 ID=Msa0131450-mRNA-1:cds;Parent=Msa0131450-mRNA-1
chr1_3 CDS 62289565 62289715 62289565 ID=Msa0131450-mRNA-1:cds;Parent=Msa0131450-mRNA-1
chr1_3 CDS 62290156 62290246 62290156 ID=Msa0131450-mRNA-1:cds;Parent=Msa0131450-mRNA-1
chr1_3 CDS 62290395 62290478 62290395 ID=Msa0131450-mRNA-1:cds;Parent=Msa0131450-mRNA-1
chr1_3 CDS 62290714 62290760 62290714 ID=Msa0131450-mRNA-1:cds;Parent=Msa0131450-mRNA-1
chr1_3 CDS 62291349 62291477 62291349 ID=Msa0131450-mRNA-1:cds;Parent=Msa0131450-mRNA-1
chr1_3 CDS 62291748 62291832 62291748 ID=Msa0131450-mRNA-1:cds;Parent=Msa0131450-mRNA-1
chr1_3 CDS 62292049 62292126 62292049 ID=Msa0131450-mRNA-1:cds;Parent=Msa0131450-mRNA-1
chr1_3 CDS 62292266 62292283 62292266 ID=Msa0131450-mRNA-1:cds;Parent=Msa0131450-mRNA-1
chr1_3 three_prime_UTR 62292284 62292595 62292284 ID=Msa0131450-mRNA-1:three_prime_utr;Parent=Msa0131450-mRNA-1
Gene Sequence

>Msa0131450

ATGGCGCGGCAGAGATCCAAAAGATTTGAACTTCCACCCGCTGATGAGAATGTTGAAAAATTGGAGAAAGTTGTGAAAGATGGAAATTGTTATGGAGCTCAACAGATGTATAAATCCATTAGTGCCAGATATGTAACTGCTCAGAGGTACACTGAAGCATTAGATATCCTACATTCAGGAGCATGCATTCAATTGGCTCATGGGCAGGTTACCTGTGGAGCAGAGCTTGCTTTATTGTTTGTGGAGACATTAGTGAAAGGGAAAATTCCTTATGATGATGAAACTCTTGATCGTCTAAAAAAAATCTATGAAGGATTTCCTCGGGTTCCATTGCCACAACACCTTTGGGATGTTGATGACATGCAGCAGCTTTCAGAAAACCTTGGAAGTGCAAAAACACGTGTTGAGGGCTGCTCCTCATTCTTAAAAGCTGCTATCAAGTGGTCTGCTGAATTTGGAACAAGTAGTAGTGGAGCTCCAGAACTGCACATTATGCTGGCTGAATACATATTTTCTGAAAGTCCTGAGGTGGATATGAATAGAGTGACGTATCATTTTGTGAGAGGAAATGATACACAGAAGTTCGCTTCTACACTATTGAACTTTTTGGGCAAGTGTTATCCTGGTGAAGATGATTTGGCCATTGCTCGGGCTGTTTTAAGGTATTTATCTTTAGGTAATTTGAAGGATGCAAACATACTAGTGGACGAGATAAAGAAGCAAACTGAATCTACGGAGATTGAGTTTCCAAAGACAGACTTGATGCAGTTCATCAATTTTCTGTTGCAAACGATGGAGAGAGATGCTTTTCCACTTTTTAATATGTTGAGAGCAAACTATAAACCAAGTATTGAGAGGGAACCTTCCTTCAATGAGTTGCTAGACGAGATTGCGCAGAAGTTTTATGGCGTACAACGAAGGAACCCCATGGGGATGTTTGGAGATATATTCAAGTTGATGGGGGCTGAGTAA

Protein sequence

>Msa0131450

MARQRSKRFELPPADENVEKLEKVVKDGNCYGAQQMYKSISARYVTAQRYTEALDILHSGACIQLAHGQVTCGAELALLFVETLVKGKIPYDDETLDRLKKIYEGFPRVPLPQHLWDVDDMQQLSENLGSAKTRVEGCSSFLKAAIKWSAEFGTSSSGAPELHIMLAEYIFSESPEVDMNRVTYHFVRGNDTQKFASTLLNFLGKCYPGEDDLAIARAVLRYLSLGNLKDANILVDEIKKQTESTEIEFPKTDLMQFINFLLQTMERDAFPLFNMLRANYKPSIEREPSFNELLDEIAQKFYGVQRRNPMGMFGDIFKLMGAE*