AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0115370

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0115370 MtrunA17_Chr1g0212521 99.535 215 1 0 1 215 1 215 1.17e-160 442
Msa0115370 MtrunA17_Chr1g0182321 91.163 215 19 0 1 215 1 215 1.01e-148 412
Msa0115370 MtrunA17_Chr1g0182301 90.698 215 20 0 1 215 1 215 5.29e-148 410
Msa0115370 MtrunA17_Chr4g0030911 93.659 205 12 1 11 215 11 214 2.86e-141 393
Msa0115370 MtrunA17_Chr7g0263071 94.146 205 12 0 11 215 11 215 1.32e-138 386
Msa0115370 MtrunA17_Chr2g0327911 75.814 215 46 4 4 215 2 213 1.12e-115 328
Msa0115370 MtrunA17_Chr7g0250531 60.194 206 73 3 10 214 3 200 9.51e-87 254
Msa0115370 MtrunA17_Chr4g0055651 58.537 205 76 3 11 214 4 200 2.27e-85 251
Msa0115370 MtrunA17_Chr8g0335471 59.223 206 74 3 11 214 4 201 6.04e-84 248
Msa0115370 MtrunA17_Chr2g0276931 54.146 205 88 2 11 215 5 203 1.35e-78 234
Msa0115370 MtrunA17_Chr6g0458081 48.325 209 101 4 12 214 3 210 1.65e-61 191
Msa0115370 MtrunA17_Chr2g0290891 46.890 209 104 3 12 214 3 210 1.24e-60 189
Msa0115370 MtrunA17_Chr4g0032201 45.370 216 104 5 7 214 4 213 4.25e-60 187
Msa0115370 MtrunA17_Chr3g0112681 44.811 212 104 4 11 214 8 214 2.29e-59 186
Msa0115370 MtrunA17_Chr2g0283131 44.907 216 106 3 7 214 5 215 2.42e-58 183
Msa0115370 MtrunA17_Chr4g0046261 43.056 216 110 3 7 214 5 215 3.84e-57 180
Msa0115370 MtrunA17_Chr4g0040781 43.519 216 109 3 7 214 5 215 1.78e-56 178
Msa0115370 MtrunA17_Chr2g0276941 44.498 209 110 4 11 214 11 218 3.39e-56 177
Msa0115370 MtrunA17_Chr2g0315551 43.721 215 116 2 4 214 2 215 4.43e-56 177
Msa0115370 MtrunA17_Chr7g0265001 46.154 208 100 5 12 214 13 213 2.28e-55 175
Msa0115370 MtrunA17_Chr8g0349711 44.286 210 105 4 14 214 5 211 2.44e-55 175
Msa0115370 MtrunA17_Chr1g0180291 48.293 205 99 6 12 214 11 210 3.43e-55 175
Msa0115370 MtrunA17_Chr1g0189361 43.519 216 103 4 13 214 12 222 5.03e-55 175
Msa0115370 MtrunA17_Chr3g0123821 42.105 209 113 3 13 214 14 221 2.84e-54 173
Msa0115370 MtrunA17_Chr2g0319951 49.425 174 87 1 4 177 2 174 1.15e-53 171
Msa0115370 MtrunA17_Chr3g0130271 45.411 207 104 6 11 214 8 208 2.10e-53 170
Msa0115370 MtrunA17_Chr8g0381841 48.485 165 84 1 13 177 15 178 3.14e-53 170
Msa0115370 MtrunA17_Chr1g0159481 45.933 209 100 7 11 214 13 213 3.75e-53 170
Msa0115370 MtrunA17_Chr1g0197331 43.779 217 113 6 1 214 1 211 4.40e-53 169
Msa0115370 MtrunA17_Chr8g0384311 43.128 211 112 5 6 214 4 208 1.13e-52 168
Msa0115370 MtrunA17_Chr7g0234201 41.667 204 115 2 14 214 12 214 1.21e-52 168
Msa0115370 MtrunA17_Chr8g0349681 47.429 175 91 1 9 183 378 551 6.80e-52 176
Msa0115370 MtrunA17_Chr8g0349681 44.681 188 97 3 12 195 172 356 1.38e-48 167
Msa0115370 MtrunA17_Chr8g0349681 49.045 157 79 1 14 170 12 167 6.67e-46 160
Msa0115370 MtrunA17_Chr2g0325091 42.308 208 114 3 11 214 7 212 3.70e-51 164
Msa0115370 MtrunA17_Chr7g0214241 40.097 207 117 3 14 214 14 219 5.63e-51 164
Msa0115370 MtrunA17_Chr8g0346421 46.667 165 87 1 13 177 24 187 1.52e-50 164
Msa0115370 MtrunA17_Chr8g0351861 41.395 215 111 3 13 214 14 226 2.61e-50 163
Msa0115370 MtrunA17_Chr1g0174281 39.815 216 112 3 13 215 13 223 4.38e-50 162
Msa0115370 MtrunA17_Chr6g0482721 41.429 210 110 4 13 214 10 214 2.07e-49 160
Msa0115370 MtrunA17_Chr7g0275991 42.775 173 98 1 7 179 12 183 9.96e-49 159
Msa0115370 MtrunA17_Chr7g0231131 45.455 165 89 1 13 177 13 176 3.26e-47 155
Msa0115370 MtrunA17_Chr8g0392931 41.546 207 115 3 13 214 12 217 2.88e-46 152
Msa0115370 MtrunA17_Chr8g0390561 39.698 199 109 4 17 215 11 198 5.27e-45 148
Msa0115370 MtrunA17_Chr1g0199331 44.242 165 90 2 16 179 32 195 5.61e-45 148
Msa0115370 MtrunA17_Chr3g0109721 38.384 198 112 4 17 214 12 199 3.30e-44 146
Msa0115370 MtrunA17_Chr5g0433561 38.889 198 111 4 17 214 12 199 1.55e-43 144
Msa0115370 MtrunA17_Chr8g0382221 37.879 198 119 3 17 213 11 205 6.30e-42 140
Msa0115370 MtrunA17_Chr5g0400131 36.967 211 125 4 4 213 2 205 2.99e-41 139
Msa0115370 MtrunA17_Chr4g0034871 39.706 204 103 7 5 192 2 201 2.26e-40 137
Msa0115370 MtrunA17_Chr4g0055081 35.377 212 129 4 4 214 2 206 4.32e-40 136
Msa0115370 MtrunA17_Chr3g0123971 36.548 197 122 2 17 213 11 204 4.81e-40 136
Msa0115370 MtrunA17_Chr8g0383261 35.122 205 118 3 15 213 12 207 1.41e-36 127
Msa0115370 MtrunA17_Chr2g0331691 35.922 206 118 4 15 214 10 207 5.07e-36 125
Msa0115370 MtrunA17_Chr4g0004661 35.122 205 120 4 15 213 64 261 8.17e-36 127
Msa0115370 MtrunA17_Chr6g0466301 39.521 167 95 3 15 175 8 174 8.45e-36 125
Msa0115370 MtrunA17_Chr6g0465491 39.521 167 95 3 15 175 8 174 8.45e-36 125
Msa0115370 MtrunA17_Chr1g0201121 35.149 202 121 4 15 208 8 207 2.92e-35 124
Msa0115370 MtrunA17_Chr2g0325101 32.934 167 99 5 15 170 6 170 2.44e-26 100
Msa0115370 MtrunA17_Chr4g0037021 34.091 176 103 6 15 179 6 179 6.23e-26 99.4
Msa0115370 MtrunA17_Chr3g0117931 32.335 167 100 5 15 170 8 172 2.15e-25 98.6
Msa0115370 MtrunA17_Chr1g0178291 40.741 162 88 3 18 179 431 584 2.23e-25 103
Msa0115370 MtrunA17_Chr6g0466161 37.333 150 88 3 32 175 7 156 2.57e-25 98.2
Msa0115370 MtrunA17_Chr6g0465471 37.333 150 88 3 32 175 7 156 2.73e-25 98.2
Msa0115370 MtrunA17_Chr3g0138121 28.910 211 140 6 3 208 2 207 3.26e-25 98.2
Msa0115370 MtrunA17_Chr3g0138111 28.638 213 135 6 3 203 2 209 3.95e-25 98.2
Msa0115370 MtrunA17_Chr3g0138101 28.638 213 135 6 3 203 2 209 4.72e-25 97.8
Msa0115370 MtrunA17_Chr8g0371501 32.335 167 100 6 15 170 6 170 5.37e-24 94.4
Msa0115370 MtrunA17_Chr6g0486041 31.138 167 102 5 15 170 6 170 1.09e-23 94.0
Msa0115370 MtrunA17_Chr5g0405791 32.335 167 100 6 15 170 6 170 1.35e-23 93.6
Msa0115370 MtrunA17_Chr4g0046211 35.484 124 77 3 15 137 6 127 4.59e-23 90.5
Msa0115370 MtrunA17_Chr6g0466431 35.789 95 52 1 15 109 8 93 5.94e-17 73.2
Msa0115370 MtrunA17_Chr6g0465611 35.789 95 52 1 15 109 8 93 5.94e-17 73.2
Msa0115370 MtrunA17_Chr5g0443631 25.466 161 111 3 16 170 105 262 1.48e-12 65.1
Msa0115370 MtrunA17_Chr5g0434561 29.878 164 96 6 16 170 20 173 1.19e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0115370 AT5G59840.1 92.683 205 15 0 11 215 11 215 1.11e-141 394
Msa0115370 AT3G46060.2 92.195 205 16 0 11 215 11 215 1.65e-141 394
Msa0115370 AT3G46060.3 92.195 205 16 0 11 215 11 215 1.65e-141 394
Msa0115370 AT3G46060.1 92.195 205 16 0 11 215 11 215 1.65e-141 394
Msa0115370 AT3G53610.2 91.220 205 18 0 11 215 11 215 3.94e-140 390
Msa0115370 AT3G53610.3 91.220 205 18 0 11 215 11 215 3.94e-140 390
Msa0115370 AT3G53610.1 91.220 205 18 0 11 215 11 215 3.94e-140 390
Msa0115370 AT5G03520.1 85.981 214 29 1 1 214 1 213 5.31e-130 365
Msa0115370 AT3G09900.1 84.186 215 33 1 1 214 1 215 1.41e-127 359
Msa0115370 AT5G03520.2 80.114 176 34 1 39 214 29 203 7.03e-102 293
Msa0115370 AT1G02130.1 59.903 207 73 3 10 214 3 201 3.18e-88 259
Msa0115370 AT4G17530.1 57.767 206 78 3 10 214 3 200 6.43e-83 245
Msa0115370 AT5G47200.1 57.767 206 78 3 10 214 3 200 2.47e-82 244
Msa0115370 AT3G11730.1 56.938 209 78 4 11 215 4 204 8.92e-81 240
Msa0115370 AT4G35860.1 49.524 210 99 4 12 215 3 211 1.03e-65 202
Msa0115370 AT4G17170.1 47.143 210 104 3 12 215 3 211 1.53e-62 194
Msa0115370 AT4G17160.1 47.573 206 103 3 12 215 3 205 3.52e-62 192
Msa0115370 AT1G09630.1 44.340 212 113 2 7 214 4 214 3.37e-59 186
Msa0115370 AT4G18430.1 44.444 216 107 3 7 214 5 215 2.26e-58 183
Msa0115370 AT1G16920.1 45.413 218 107 4 4 214 2 214 9.32e-58 182
Msa0115370 AT5G59150.1 42.202 218 110 3 7 214 4 215 3.39e-57 180
Msa0115370 AT1G07410.1 41.905 210 119 2 7 214 4 212 6.85e-57 179
Msa0115370 AT5G60860.1 43.379 219 111 3 4 214 2 215 9.96e-57 179
Msa0115370 AT3G46830.1 49.708 171 85 1 7 177 4 173 4.46e-56 177
Msa0115370 AT3G46830.2 49.708 171 85 1 7 177 4 173 4.46e-56 177
Msa0115370 AT3G15060.1 44.091 220 108 4 4 214 2 215 6.19e-56 177
Msa0115370 AT5G47520.1 44.601 213 102 5 13 214 12 219 2.96e-55 176
Msa0115370 AT5G45750.1 42.056 214 120 2 4 214 2 214 3.69e-55 175
Msa0115370 AT2G33870.1 43.119 218 110 4 7 215 5 217 1.08e-54 174
Msa0115370 AT4G39990.1 43.750 208 110 3 13 214 15 221 3.82e-54 173
Msa0115370 AT4G18800.1 42.453 212 120 2 4 214 2 212 6.66e-54 172
Msa0115370 AT1G28550.1 42.857 217 110 4 7 214 5 216 7.77e-54 172
Msa0115370 AT2G43130.1 40.686 204 118 2 13 214 10 212 9.13e-54 171
Msa0115370 AT1G06400.1 42.056 214 120 2 4 214 2 214 1.42e-53 171
Msa0115370 AT1G01200.1 47.337 169 89 0 13 181 26 194 6.44e-53 170
Msa0115370 AT3G07410.1 49.697 165 82 1 13 177 10 173 9.88e-53 169
Msa0115370 AT1G05810.1 41.063 207 116 3 13 214 10 215 3.40e-52 167
Msa0115370 AT1G43890.3 45.455 198 104 4 6 201 4 199 5.63e-52 167
Msa0115370 AT1G43890.1 45.455 198 104 4 6 201 4 199 5.63e-52 167
Msa0115370 AT1G43890.2 45.455 198 104 4 6 201 4 199 5.63e-52 167
Msa0115370 AT1G05810.2 41.063 207 116 3 13 214 56 261 1.07e-51 168
Msa0115370 AT5G47960.1 48.485 165 84 1 13 177 13 176 1.43e-51 166
Msa0115370 AT2G31680.1 47.273 165 86 1 13 177 10 173 1.45e-51 166
Msa0115370 AT1G18200.1 49.133 173 87 1 13 185 11 182 5.17e-51 165
Msa0115370 AT5G03530.2 45.024 211 105 6 8 214 6 209 7.18e-51 164
Msa0115370 AT5G03530.1 45.024 211 105 6 8 214 6 209 7.18e-51 164
Msa0115370 AT5G65270.1 40.758 211 115 4 13 214 15 224 7.97e-51 164
Msa0115370 AT1G73640.1 46.809 188 95 2 13 196 11 197 2.40e-50 163
Msa0115370 AT3G12160.1 40.670 209 117 2 13 215 13 220 4.43e-50 162
Msa0115370 AT3G54840.1 44.382 178 94 3 3 179 24 197 3.49e-48 157
Msa0115370 AT3G54840.2 46.154 169 86 3 3 170 24 188 1.30e-47 155
Msa0115370 AT3G54840.3 44.767 172 89 3 18 188 2 168 1.10e-46 152
Msa0115370 AT4G35860.2 47.879 165 79 4 57 215 2 165 7.90e-46 150
Msa0115370 AT3G09910.5 44.792 192 102 4 8 197 6 195 1.06e-44 148
Msa0115370 AT3G09910.4 44.792 192 102 4 8 197 6 195 1.06e-44 148
Msa0115370 AT4G19640.1 39.196 199 111 4 17 215 12 200 7.68e-43 143
Msa0115370 AT3G09910.3 47.126 174 88 4 8 179 6 177 5.28e-42 141
Msa0115370 AT3G09910.1 47.126 174 88 4 8 179 6 177 5.28e-42 141
Msa0115370 AT3G09910.2 47.126 174 88 4 8 179 6 177 5.28e-42 141
Msa0115370 AT2G44610.1 37.559 213 125 4 4 215 2 207 1.04e-41 140
Msa0115370 AT5G45130.1 37.000 200 114 4 17 215 12 200 1.20e-41 140
Msa0115370 AT5G10260.1 37.186 199 122 2 17 215 11 206 5.52e-41 139
Msa0115370 AT3G18820.1 42.135 178 93 4 5 176 2 175 5.60e-41 139
Msa0115370 AT4G39890.1 43.396 159 88 2 17 174 11 168 5.90e-41 139
Msa0115370 AT2G22290.1 36.869 198 122 2 17 214 11 205 1.28e-40 138
Msa0115370 AT5G45130.2 36.364 198 114 4 19 215 22 208 7.99e-40 135
Msa0115370 AT5G59150.2 39.881 168 85 3 57 214 3 164 1.13e-37 129
Msa0115370 AT1G52280.1 37.073 205 115 4 15 213 8 204 1.79e-37 130
Msa0115370 AT4G09720.1 39.378 193 101 4 15 191 8 200 1.83e-37 129
Msa0115370 AT1G49300.2 37.624 202 107 6 5 191 2 199 2.10e-37 129
Msa0115370 AT1G49300.1 37.624 202 107 6 5 191 2 199 2.10e-37 129
Msa0115370 AT5G64990.1 41.401 157 91 1 17 173 9 164 2.04e-36 127
Msa0115370 AT1G22740.1 40.719 167 93 3 15 175 8 174 4.60e-36 126
Msa0115370 AT3G16100.1 41.071 168 93 2 15 176 8 175 4.88e-36 126
Msa0115370 AT4G09720.4 38.889 198 100 5 15 191 8 205 1.36e-35 125
Msa0115370 AT2G21880.1 37.725 167 98 2 15 175 9 175 4.56e-35 124
Msa0115370 AT4G09720.3 37.255 204 101 5 15 191 8 211 3.78e-34 121
Msa0115370 AT5G64990.2 39.634 164 91 2 17 173 9 171 1.11e-33 120
Msa0115370 AT5G39620.1 38.462 169 92 3 16 175 6 171 1.22e-33 120
Msa0115370 AT4G19640.2 39.669 121 73 0 17 137 12 132 2.24e-30 110
Msa0115370 AT4G19640.3 39.669 121 73 0 17 137 12 132 1.26e-29 109
Msa0115370 AT4G09720.6 39.634 164 83 4 44 191 3 166 1.80e-28 105
Msa0115370 AT4G09720.5 39.634 164 83 4 44 191 3 166 1.80e-28 105
Msa0115370 AT4G09720.2 39.634 164 83 4 44 191 3 166 1.80e-28 105
Msa0115370 AT4G35020.1 35.928 167 94 6 15 170 6 170 1.23e-27 104
Msa0115370 AT4G35020.2 35.928 167 94 6 15 170 6 170 1.23e-27 104
Msa0115370 AT4G35020.3 35.928 167 94 6 15 170 6 170 1.23e-27 104
Msa0115370 AT2G21880.4 37.324 142 83 2 40 175 9 150 5.87e-27 102
Msa0115370 AT2G21880.3 37.324 142 83 2 40 175 9 150 5.87e-27 102
Msa0115370 AT5G20010.1 28.972 214 142 6 3 212 2 209 2.07e-26 101
Msa0115370 AT3G48040.1 32.934 167 99 5 15 170 8 172 2.32e-26 101
Msa0115370 AT2G44690.1 32.335 167 100 5 15 170 18 182 2.40e-26 101
Msa0115370 AT5G62880.1 31.844 179 109 5 15 182 8 184 4.78e-26 100
Msa0115370 AT5G45970.1 31.138 167 102 5 15 170 6 170 5.99e-26 100
Msa0115370 AT1G20090.1 34.132 167 97 6 15 170 5 169 2.09e-25 98.6
Msa0115370 AT3G51300.1 32.335 167 100 6 15 170 6 170 2.31e-25 98.2
Msa0115370 AT1G75840.1 33.533 167 98 6 15 170 6 170 2.56e-25 98.2
Msa0115370 AT2G21880.2 32.934 167 98 3 15 175 9 167 3.09e-25 98.2
Msa0115370 AT5G55190.1 28.037 214 142 6 3 209 2 210 6.18e-25 97.8
Msa0115370 AT2G17800.2 32.934 167 99 6 15 170 6 170 8.99e-25 96.7
Msa0115370 AT2G17800.1 32.934 167 99 6 15 170 6 170 8.99e-25 96.7
Msa0115370 AT5G55080.1 32.716 162 105 3 16 177 14 171 1.12e-24 97.1
Msa0115370 AT5G20020.1 30.286 175 117 4 3 177 2 171 1.24e-24 97.1
Msa0115370 AT4G28950.1 31.515 165 102 5 15 170 6 168 3.49e-24 95.5
Msa0115370 AT4G35950.1 32.335 167 100 6 15 170 6 170 7.98e-24 94.4
Msa0115370 AT3G48040.2 32.704 159 94 5 15 162 8 164 1.02e-23 93.6
Msa0115370 AT5G62880.2 32.317 164 98 5 15 167 8 169 8.44e-23 91.7
Msa0115370 AT4G35020.4 37.069 116 70 3 15 129 6 119 1.20e-19 82.0
Msa0115370 AT4G35020.5 37.069 116 70 3 15 129 6 119 1.20e-19 82.0
Msa0115370 AT5G46025.1 35.294 102 64 2 77 177 6 106 2.91e-15 69.7
Msa0115370 AT3G51290.2 30.769 143 86 6 44 175 636 776 3.28e-13 68.6
Msa0115370 AT5G37680.1 27.439 164 100 5 16 170 20 173 8.59e-12 62.0
Msa0115370 AT2G15310.1 28.058 139 88 6 16 153 18 145 1.78e-11 61.6

Find 76 sgRNAs with CRISPR-Local

Find 222 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACGCATTAAGTTGCAAATT+TGG 0.124150 1_3:-34245260 Msa0115370:CDS
CTTCTTTCTGTTCAGATATT+AGG 0.164910 1_3:-34244706 Msa0115370:intron
TAACGGAAAGAACCAGTATT+TGG 0.222249 1_3:-34243852 Msa0115370:three_prime_UTR
CTCATCAAGCTTCTTCTTAT+CGG 0.235582 1_3:-34246921 Msa0115370:CDS
GTTGGTTAATCTTGATACTC+TGG 0.323408 1_3:+34243928 None:intergenic
CATTGGCTGCCTGGTCTTGT+TGG 0.332079 1_3:+34243910 None:intergenic
ACGCATTAAGTTGCAAATTT+GGG 0.344668 1_3:-34245259 Msa0115370:CDS
AATCGGCTTGCTGCGGTTAA+CGG 0.352175 1_3:-34243869 Msa0115370:exon
ACGAATAGCTTCTAACTATT+CGG 0.354488 1_3:-34247036 Msa0115370:five_prime_UTR
TGTGGGAAACAAGGCTGATA+TGG 0.357144 1_3:-34244630 Msa0115370:CDS
TTGGTTAATCTTGATACTCT+GGG 0.358486 1_3:+34243929 None:intergenic
TGGAGCCATGGGTATCTTGC+TGG 0.359100 1_3:-34245034 Msa0115370:CDS
ATATCTTGACAAATAGATTA+TGG 0.365179 1_3:-34243640 Msa0115370:three_prime_UTR
CCTGACCACCATTGGCTGCC+TGG 0.367231 1_3:+34243901 None:intergenic
CCGATCTCTGTGCTGTGCTT+TGG 0.379544 1_3:-34247004 Msa0115370:five_prime_UTR
ATCAGCAAGAGCTTGACCTT+TGG 0.383335 1_3:+34244379 None:intergenic
CAAGCTCTTGCTGATGAGTA+TGG 0.383437 1_3:-34244371 Msa0115370:CDS
ATAAGAACCATTGAACTTGA+TGG 0.385351 1_3:-34245285 Msa0115370:CDS
GAAGAGGGTGGGGCCGAATC+TGG 0.396944 1_3:-34247234 Msa0115370:five_prime_UTR
TAATCGGCACGAGCTCTTGC+AGG 0.397197 1_3:+34246951 None:intergenic
TCTGTTCAGATATTAGGAAT+TGG 0.400880 1_3:-34244700 Msa0115370:intron
CTGATATGGATGAAAGTAAA+CGG 0.401383 1_3:-34244616 Msa0115370:CDS
CCAGGCAGCCAATGGTGGTC+AGG 0.405180 1_3:-34243901 Msa0115370:CDS
AACGGAAAGAACCAGTATTT+GGG 0.406450 1_3:-34243851 Msa0115370:three_prime_UTR
TAACATTAGCACCCAAATAC+TGG 0.409918 1_3:+34243840 None:intergenic
AATTTGGGACACAGCTGGTC+AGG 0.423871 1_3:-34245244 Msa0115370:CDS
AGTTAGAAGCTATTCGTTGT+TGG 0.433064 1_3:+34247042 None:intergenic
CCCAATGGTGGTGATAAAAC+TGG 0.440887 1_3:+34245885 None:intergenic
CTTGATGAGGTAATCGTAAT+CGG 0.447072 1_3:+34246935 None:intergenic
AGCAAGAGCTTGACCTTTGG+AGG 0.448218 1_3:+34244382 None:intergenic
GCGTTTGCCATCAAGTTCAA+TGG 0.456159 1_3:+34245278 None:intergenic
GGGCCGAATCTGGTGTGTGC+AGG 0.458815 1_3:-34247224 Msa0115370:five_prime_UTR
AATGTAAACAAGATACTTGT+GGG 0.475156 1_3:-34244647 Msa0115370:CDS
ACTCCTGCACACACCAGATT+CGG 0.478127 1_3:+34247221 None:intergenic
TCGTTGTTGGCGACATGGAA+TGG 0.479080 1_3:+34247055 None:intergenic
AGCTTATTATCGTGGAGCCA+TGG 0.483620 1_3:-34245046 Msa0115370:CDS
TGTGAAGTTGGAAGATAAAG+AGG 0.496857 1_3:+34243778 None:intergenic
TTACAATTATGGATGCTGAA+TGG 0.498273 1_3:-34247286 Msa0115370:five_prime_UTR
CACAGCACAGAGATCGGAAT+CGG 0.499162 1_3:+34247010 None:intergenic
TGATATGGATGAAAGTAAAC+GGG 0.500423 1_3:-34244615 Msa0115370:intron
TATTCTGATGACAATATTAG+TGG 0.503959 1_3:-34243819 Msa0115370:three_prime_UTR
ACATACCTGTAGTAATAGTT+CGG 0.505948 1_3:+34245214 None:intergenic
TAAAACAAGACATGTGAAGT+TGG 0.515497 1_3:+34243766 None:intergenic
CAAGATACTTGTGGGAAACA+AGG 0.517167 1_3:-34244639 Msa0115370:CDS
TTGTGCAGCCTGACCACCAT+TGG 0.522584 1_3:+34243893 None:intergenic
TTGCAAATTTGGGACACAGC+TGG 0.522901 1_3:-34245249 Msa0115370:CDS
GCTATTCGTTGTTGGCGACA+TGG 0.535062 1_3:+34247050 None:intergenic
CCAAAGCACAGCACAGAGAT+CGG 0.546259 1_3:+34247004 None:intergenic
CTTCTTCTTATCGGCGACAG+TGG 0.546770 1_3:-34246912 Msa0115370:intron
GTAGTATATTGAAGAGGGTG+GGG 0.550437 1_3:-34247244 Msa0115370:five_prime_UTR
GCTTATTATCGTGGAGCCAT+GGG 0.550907 1_3:-34245045 Msa0115370:CDS
CAATGTAAACAAGATACTTG+TGG 0.552374 1_3:-34244648 Msa0115370:CDS
GGTAGTATATTGAAGAGGGT+GGG 0.555056 1_3:-34247245 Msa0115370:five_prime_UTR
TCTGTTGCAGCTTATTATCG+TGG 0.558222 1_3:-34245054 Msa0115370:intron
AGATTCCGAACTATTACTAC+AGG 0.559019 1_3:-34245219 Msa0115370:intron
AGAGCTTGACCTTTGGAGGT+AGG 0.570506 1_3:+34244386 None:intergenic
CAAGATTAACCAACAAGACC+AGG 0.573376 1_3:-34243919 Msa0115370:CDS
CACAGGTAGTATATTGAAGA+GGG 0.585743 1_3:-34247249 Msa0115370:five_prime_UTR
ACACAGGTAGTATATTGAAG+AGG 0.596277 1_3:-34247250 Msa0115370:five_prime_UTR
AGGTAGTATATTGAAGAGGG+TGG 0.601881 1_3:-34247246 Msa0115370:five_prime_UTR
ATTCTGATGACAATATTAGT+GGG 0.606836 1_3:-34243818 Msa0115370:three_prime_UTR
CAACAAGACCAGGCAGCCAA+TGG 0.612044 1_3:-34243909 Msa0115370:CDS
TACAAATACTAACCCAATGG+TGG 0.615885 1_3:+34245873 None:intergenic
AGACACTGTTTCTAGTACTG+AGG 0.616300 1_3:-34244178 Msa0115370:intron
TGGTCCAATAAAAGAGACAC+AGG 0.620251 1_3:-34247266 Msa0115370:five_prime_UTR
TAGGCTGTACCTACCTCCAA+AGG 0.624971 1_3:-34244395 Msa0115370:CDS
CTCAACTATTTGTAGGTGTG+GGG 0.631205 1_3:-34245951 Msa0115370:intron
TAGCAAGAGATATCAAGCAA+AGG 0.641515 1_3:-34244206 Msa0115370:CDS
GGACTGGTATACTTTGCACG+TGG 0.648609 1_3:+34243610 None:intergenic
GGTGATAAAACTGGTTGTGA+AGG 0.649377 1_3:+34245894 None:intergenic
GTGCAGGAGTATGAAAGTGT+TGG 0.654728 1_3:-34247208 Msa0115370:five_prime_UTR
TGGTTAATCTTGATACTCTG+GGG 0.656186 1_3:+34243930 None:intergenic
GTTGGCGACATGGAATGGAA+TGG 0.657982 1_3:+34247060 None:intergenic
CGATAAGAAGAAGCTTGATG+AGG 0.673490 1_3:+34246922 None:intergenic
CAAGACCAGGCAGCCAATGG+TGG 0.679968 1_3:-34243906 Msa0115370:CDS
GTAAACCAGCAAGATACCCA+TGG 0.687226 1_3:+34245029 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTATTGTTAACAAATTT+TGG + chr1_3:34244177-34244196 None:intergenic 10.0%
!! CATTAAATTGATGTAAAATT+GGG + chr1_3:34244108-34244127 None:intergenic 15.0%
!! ACATTAAATTGATGTAAAAT+TGG + chr1_3:34244109-34244128 None:intergenic 15.0%
!!! TTAATAAAATTTGTTGAGTA+TGG - chr1_3:34244203-34244222 Msa0115370:CDS 15.0%
!! ATGTAAGTATAATTTAAAAG+TGG - chr1_3:34245263-34245282 Msa0115370:CDS 15.0%
!! AAAAAATATAGATATATGTC+TGG + chr1_3:34245537-34245556 None:intergenic 15.0%
!! AATCTTATTATAAAAATGCA+TGG - chr1_3:34245567-34245586 Msa0115370:intron 15.0%
!! ATTAGAAAGACAAAAACAAA+AGG - chr1_3:34244375-34244394 Msa0115370:CDS 20.0%
!! CATAAGAATAAGAAAAATAG+CGG + chr1_3:34244656-34244675 None:intergenic 20.0%
!! TTCTTATGGAATGAAAATTT+AGG - chr1_3:34244668-34244687 Msa0115370:CDS 20.0%
!! TCTTATGGAATGAAAATTTA+GGG - chr1_3:34244669-34244688 Msa0115370:CDS 20.0%
!!! GAAAAGTACGTAAAAATAAA+AGG + chr1_3:34244917-34244936 None:intergenic 20.0%
!! AGCATTATTAAATCATGTTA+AGG + chr1_3:34245347-34245366 None:intergenic 20.0%
!! AAGAAAAAGAAATAATAGAG+AGG + chr1_3:34246816-34246835 None:intergenic 20.0%
!!! AATGATGATATTTTCTTCTA+TGG - chr1_3:34246930-34246949 Msa0115370:CDS 20.0%
!!! TAAGTTTTTTCTCATGTAAT+TGG - chr1_3:34247161-34247180 Msa0115370:five_prime_UTR 20.0%
!! ATATCTTGACAAATAGATTA+TGG - chr1_3:34247251-34247270 Msa0115370:five_prime_UTR 20.0%
! AATATATCATCTCTATTACC+CGG + chr1_3:34244300-34244319 None:intergenic 25.0%
! TTAGTGATAACAAAGAAAAG+AGG - chr1_3:34244326-34244345 Msa0115370:intron 25.0%
! TGTGATATTGAGAAATTTGA+AGG + chr1_3:34244586-34244605 None:intergenic 25.0%
! TCAAATTTCTCAATATCACA+AGG - chr1_3:34244586-34244605 Msa0115370:intron 25.0%
!!! CATAGTAGAATTTTGACTAA+CGG + chr1_3:34244622-34244641 None:intergenic 25.0%
!!! CGCTATTTTTCTTATTCTTA+TGG - chr1_3:34244654-34244673 Msa0115370:CDS 25.0%
!! ACCTACCAATTTCATAATTT+TGG - chr1_3:34244757-34244776 Msa0115370:intron 25.0%
! TCCAAAATTATGAAATTGGT+AGG + chr1_3:34244761-34244780 None:intergenic 25.0%
! CTAGTCCAAAATTATGAAAT+TGG + chr1_3:34244765-34244784 None:intergenic 25.0%
! ATTAACTCAAACAAGATACA+AGG + chr1_3:34244868-34244887 None:intergenic 25.0%
! TATTACAAATACTAACCCAA+TGG + chr1_3:34245024-34245043 None:intergenic 25.0%
! TTCTTATTGGTCAAAAACAA+TGG - chr1_3:34245103-34245122 Msa0115370:intron 25.0%
!! TGATATTTGTACATCCATTT+TGG + chr1_3:34245200-34245219 None:intergenic 25.0%
! ATTTAGAAATACAGCAAACT+TGG - chr1_3:34245394-34245413 Msa0115370:intron 25.0%
! TTTAGAAATACAGCAAACTT+GGG - chr1_3:34245395-34245414 Msa0115370:intron 25.0%
! ATATATCAGACAAACTCTAT+AGG + chr1_3:34245421-34245440 None:intergenic 25.0%
! TGTATAAGATGAAGGAAATT+CGG + chr1_3:34245495-34245514 None:intergenic 25.0%
! TACTTATGTGTATAAGATGA+AGG + chr1_3:34245503-34245522 None:intergenic 25.0%
!! TCAATTGATAGTTGTTCATT+TGG - chr1_3:34245730-34245749 Msa0115370:intron 25.0%
! TTTAAGCAGAAATAAGATCA+GGG + chr1_3:34245928-34245947 None:intergenic 25.0%
! AATGTAAACAAGATACTTGT+GGG - chr1_3:34246244-34246263 Msa0115370:intron 25.0%
! ATGTCAAGTAAAAGTAGAAA+GGG + chr1_3:34246318-34246337 None:intergenic 25.0%
! TTTCCTTCAATACAAACATA+AGG - chr1_3:34246459-34246478 Msa0115370:intron 25.0%
! TTAGCAGAATAAGTAATTGT+TGG + chr1_3:34246856-34246875 None:intergenic 25.0%
! TATTCTGATGACAATATTAG+TGG - chr1_3:34247072-34247091 Msa0115370:five_prime_UTR 25.0%
! ATTCTGATGACAATATTAGT+GGG - chr1_3:34247073-34247092 Msa0115370:five_prime_UTR 25.0%
ACGAATAGCTTCTAACTATT+CGG - chr1_3:34243855-34243874 Msa0115370:exon 30.0%
AAGTGAATAACATGAAGATC+TGG + chr1_3:34244034-34244053 None:intergenic 30.0%
!! TTGGTCTTAAATTTGATGTG+TGG + chr1_3:34244158-34244177 None:intergenic 30.0%
ATATATCATCTCTATTACCC+GGG + chr1_3:34244299-34244318 None:intergenic 30.0%
CGATTCAGAGTATAAAAAGT+TGG - chr1_3:34244479-34244498 Msa0115370:intron 30.0%
GTCAAAATTCTACTATGCTA+TGG - chr1_3:34244625-34244644 Msa0115370:CDS 30.0%
TTTCTGACTCAACTATTTGT+AGG - chr1_3:34244933-34244952 Msa0115370:intron 30.0%
!! AACTACTTTTGTACTACTTC+TGG - chr1_3:34245062-34245081 Msa0115370:intron 30.0%
!! ACTACTTTTGTACTACTTCT+GGG - chr1_3:34245063-34245082 Msa0115370:intron 30.0%
AAAACAATGGAGAGAGAAAA+AGG - chr1_3:34245116-34245135 Msa0115370:intron 30.0%
GTACAAAAGTTGTACCAAAA+TGG - chr1_3:34245183-34245202 Msa0115370:intron 30.0%
ATAAGAACCATTGAACTTGA+TGG - chr1_3:34245606-34245625 Msa0115370:intron 30.0%
! AACGCATTAAGTTGCAAATT+TGG - chr1_3:34245631-34245650 Msa0115370:intron 30.0%
! ACGCATTAAGTTGCAAATTT+GGG - chr1_3:34245632-34245651 Msa0115370:intron 30.0%
ACATACCTGTAGTAATAGTT+CGG + chr1_3:34245680-34245699 None:intergenic 30.0%
CTTTAAGCAGAAATAAGATC+AGG + chr1_3:34245929-34245948 None:intergenic 30.0%
CACTAATGTCTGAAAATTGT+AGG - chr1_3:34245976-34245995 Msa0115370:intron 30.0%
AAACAGATCAATTGATTGTC+TGG + chr1_3:34246097-34246116 None:intergenic 30.0%
CTTCTTTCTGTTCAGATATT+AGG - chr1_3:34246185-34246204 Msa0115370:intron 30.0%
TCTGTTCAGATATTAGGAAT+TGG - chr1_3:34246191-34246210 Msa0115370:intron 30.0%
CAATGTAAACAAGATACTTG+TGG - chr1_3:34246243-34246262 Msa0115370:intron 30.0%
CTGATATGGATGAAAGTAAA+CGG - chr1_3:34246275-34246294 Msa0115370:intron 30.0%
TGATATGGATGAAAGTAAAC+GGG - chr1_3:34246276-34246295 Msa0115370:intron 30.0%
GATGTCAAGTAAAAGTAGAA+AGG + chr1_3:34246319-34246338 None:intergenic 30.0%
ACACCTTATGTTTGTATTGA+AGG + chr1_3:34246465-34246484 None:intergenic 30.0%
TGCAAAAACAAACATGAATG+TGG - chr1_3:34246644-34246663 Msa0115370:intron 30.0%
AAAAACAAACATGAATGTGG+AGG - chr1_3:34246647-34246666 Msa0115370:intron 30.0%
AGGACTACAAAAATGAAGAT+AGG + chr1_3:34246756-34246775 None:intergenic 30.0%
! TTTGTTGCTTCTTTCTTGTT+TGG - chr1_3:34246897-34246916 Msa0115370:intron 30.0%
! GATGATATTTTCTTCTATGG+TGG - chr1_3:34246933-34246952 Msa0115370:CDS 30.0%
TTGGTTAATCTTGATACTCT+GGG + chr1_3:34246965-34246984 None:intergenic 30.0%
TAAAACAAGACATGTGAAGT+TGG + chr1_3:34247128-34247147 None:intergenic 30.0%
!!! GTTTTTTCTCATGTAATTGG+TGG - chr1_3:34247164-34247183 Msa0115370:five_prime_UTR 30.0%
! ACTACCTGTGTCTCTTTTAT+TGG + chr1_3:34243632-34243651 None:intergenic 35.0%
ACACAGGTAGTATATTGAAG+AGG - chr1_3:34243641-34243660 Msa0115370:three_prime_UTR 35.0%
CACAGGTAGTATATTGAAGA+GGG - chr1_3:34243642-34243661 Msa0115370:three_prime_UTR 35.0%
AGTTAGAAGCTATTCGTTGT+TGG + chr1_3:34243852-34243871 None:intergenic 35.0%
CTTGATGAGGTAATCGTAAT+CGG + chr1_3:34243959-34243978 None:intergenic 35.0%
CTCATCAAGCTTCTTCTTAT+CGG - chr1_3:34243970-34243989 Msa0115370:intron 35.0%
! ATTTGTTGAGTATGGCTTTG+TGG - chr1_3:34244211-34244230 Msa0115370:CDS 35.0%
AAGAAAAGAGGAGATGTTGT+TGG - chr1_3:34244338-34244357 Msa0115370:intron 35.0%
GGAAAAAGATGTTTACTCCT+TGG - chr1_3:34244396-34244415 Msa0115370:intron 35.0%
AGATGTTTACTCCTTGGAAA+TGG - chr1_3:34244402-34244421 Msa0115370:intron 35.0%
CATGGTTCAAGTAGTTGTAA+CGG + chr1_3:34244530-34244549 None:intergenic 35.0%
GTTACAACTACTTGAACCAT+GGG - chr1_3:34244529-34244548 Msa0115370:intron 35.0%
GAAATTTGAAGGAAAAGCCA+CGG + chr1_3:34244575-34244594 None:intergenic 35.0%
CTATTTGTGCCAATCACAAT+TGG - chr1_3:34244821-34244840 Msa0115370:intron 35.0%
ACTCAACTATTTGTAGGTGT+GGG - chr1_3:34244939-34244958 Msa0115370:intron 35.0%
!!! TTGCTTTTGAGGTTTTCTGA+TGG - chr1_3:34244972-34244991 Msa0115370:intron 35.0%
TACAAATACTAACCCAATGG+TGG + chr1_3:34245021-34245040 None:intergenic 35.0%
CCAATAAGAAGAGAACAACA+AGG + chr1_3:34245093-34245112 None:intergenic 35.0%
!! CCTTGTTGTTCTCTTCTTAT+TGG - chr1_3:34245090-34245109 Msa0115370:intron 35.0%
TGTAAACACTTTCTCATCGT+TGG - chr1_3:34245467-34245486 Msa0115370:intron 35.0%
AGATTCCGAACTATTACTAC+AGG - chr1_3:34245672-34245691 Msa0115370:intron 35.0%
ACTGGGAACTCGTAATTAAT+AGG - chr1_3:34245761-34245780 Msa0115370:intron 35.0%
TTAAGACATGTTCCTTCAAC+AGG + chr1_3:34245807-34245826 None:intergenic 35.0%
AAATAAGATCAGGGAAAGGA+GGG + chr1_3:34245919-34245938 None:intergenic 35.0%
AAAAGGAACAAGAATGGATG+GGG + chr1_3:34246040-34246059 None:intergenic 35.0%
CAAAAGGAACAAGAATGGAT+GGG + chr1_3:34246041-34246060 None:intergenic 35.0%
TCAAAAGGAACAAGAATGGA+TGG + chr1_3:34246042-34246061 None:intergenic 35.0%
AAGGCAAGCAGAATAAACAA+TGG + chr1_3:34246152-34246171 None:intergenic 35.0%
TACTTGACATCTTAGCTGTT+TGG - chr1_3:34246328-34246347 Msa0115370:intron 35.0%
ACTTGACATCTTAGCTGTTT+GGG - chr1_3:34246329-34246348 Msa0115370:intron 35.0%
TCCGTAAGTAAATGTGGTAT+GGG + chr1_3:34246401-34246420 None:intergenic 35.0%
ATCCGTAAGTAAATGTGGTA+TGG + chr1_3:34246402-34246421 None:intergenic 35.0%
!! TAAGGTGTTCGTTTTTCTCT+AGG - chr1_3:34246477-34246496 Msa0115370:intron 35.0%
TAGCAAGAGATATCAAGCAA+AGG - chr1_3:34246685-34246704 Msa0115370:intron 35.0%
AAGATAGGAAAGAGTCAACA+AGG + chr1_3:34246741-34246760 None:intergenic 35.0%
! ATTTTTGTAGTCCTCAGAAG+TGG - chr1_3:34246762-34246781 Msa0115370:intron 35.0%
GAAATAATAGAGAGGAGAGA+AGG + chr1_3:34246808-34246827 None:intergenic 35.0%
TGGTTAATCTTGATACTCTG+GGG + chr1_3:34246964-34246983 None:intergenic 35.0%
GTTGGTTAATCTTGATACTC+TGG + chr1_3:34246966-34246985 None:intergenic 35.0%
TAACGGAAAGAACCAGTATT+TGG - chr1_3:34247039-34247058 Msa0115370:five_prime_UTR 35.0%
AACGGAAAGAACCAGTATTT+GGG - chr1_3:34247040-34247059 Msa0115370:five_prime_UTR 35.0%
TAACATTAGCACCCAAATAC+TGG + chr1_3:34247054-34247073 None:intergenic 35.0%
TGTGAAGTTGGAAGATAAAG+AGG + chr1_3:34247116-34247135 None:intergenic 35.0%
TGGTCCAATAAAAGAGACAC+AGG - chr1_3:34243625-34243644 Msa0115370:three_prime_UTR 40.0%
AGGTAGTATATTGAAGAGGG+TGG - chr1_3:34243645-34243664 Msa0115370:three_prime_UTR 40.0%
GGTAGTATATTGAAGAGGGT+GGG - chr1_3:34243646-34243665 Msa0115370:three_prime_UTR 40.0%
GTAGTATATTGAAGAGGGTG+GGG - chr1_3:34243647-34243666 Msa0115370:three_prime_UTR 40.0%
!!! GAGTGTTGAATTTTGAGCGA+TGG - chr1_3:34243909-34243928 Msa0115370:CDS 40.0%
CGATAAGAAGAAGCTTGATG+AGG + chr1_3:34243972-34243991 None:intergenic 40.0%
GAAAGTAGATGACCATAACC+CGG - chr1_3:34244278-34244297 Msa0115370:intron 40.0%
AAAGTAGATGACCATAACCC+GGG - chr1_3:34244279-34244298 Msa0115370:intron 40.0%
GAGATGTTGTTGGAAAAGAG+AGG - chr1_3:34244348-34244367 Msa0115370:intron 40.0%
CCAGTAATCTTCCATTTCCA+AGG + chr1_3:34244416-34244435 None:intergenic 40.0%
CCTTGGAAATGGAAGATTAC+TGG - chr1_3:34244413-34244432 Msa0115370:intron 40.0%
GGAAGATTACTGGAGAATAG+AGG - chr1_3:34244423-34244442 Msa0115370:intron 40.0%
AAGTTGGAGTCTTTCATACG+AGG - chr1_3:34244495-34244514 Msa0115370:intron 40.0%
AGTAGTTGTAACGGTAACAG+TGG + chr1_3:34244521-34244540 None:intergenic 40.0%
CGTTACAACTACTTGAACCA+TGG - chr1_3:34244528-34244547 Msa0115370:intron 40.0%
TTGTAAATCCTCAACGAGGT+TGG + chr1_3:34244722-34244741 None:intergenic 40.0%
ACCTCGTTGAGGATTTACAA+TGG - chr1_3:34244722-34244741 Msa0115370:intron 40.0%
TCCATTGTAAATCCTCAACG+AGG + chr1_3:34244726-34244745 None:intergenic 40.0%
ACTAGATCTCATATCACAGC+TGG - chr1_3:34244780-34244799 Msa0115370:intron 40.0%
GACTCAACTATTTGTAGGTG+TGG - chr1_3:34244938-34244957 Msa0115370:intron 40.0%
CTCAACTATTTGTAGGTGTG+GGG - chr1_3:34244940-34244959 Msa0115370:intron 40.0%
!! GGAAGAGTTGTTTGCTTTTG+AGG - chr1_3:34244961-34244980 Msa0115370:intron 40.0%
GGTGATAAAACTGGTTGTGA+AGG + chr1_3:34245000-34245019 None:intergenic 40.0%
!! ACCAGTTTTATCACCACCAT+TGG - chr1_3:34245005-34245024 Msa0115370:CDS 40.0%
!! CCAGTTTTATCACCACCATT+GGG - chr1_3:34245006-34245025 Msa0115370:CDS 40.0%
TTCATTTGGTCCCATACACT+GGG - chr1_3:34245744-34245763 Msa0115370:intron 40.0%
ATTACGAGTTCCCAGTGTAT+GGG + chr1_3:34245757-34245776 None:intergenic 40.0%
AATTACGAGTTCCCAGTGTA+TGG + chr1_3:34245758-34245777 None:intergenic 40.0%
TTTACCCACATTCCTGTTGA+AGG - chr1_3:34245792-34245811 Msa0115370:intron 40.0%
TGTTCCTTCAACAGGAATGT+GGG + chr1_3:34245799-34245818 None:intergenic 40.0%
ATGTTCCTTCAACAGGAATG+TGG + chr1_3:34245800-34245819 None:intergenic 40.0%
TCTGTTGCAGCTTATTATCG+TGG - chr1_3:34245837-34245856 Msa0115370:intron 40.0%
GAAATAAGATCAGGGAAAGG+AGG + chr1_3:34245920-34245939 None:intergenic 40.0%
GCAGAAATAAGATCAGGGAA+AGG + chr1_3:34245923-34245942 None:intergenic 40.0%
GAATGGATGGGGAAATAAGA+AGG + chr1_3:34246029-34246048 None:intergenic 40.0%
GAGGTCAAAAGGAACAAGAA+TGG + chr1_3:34246046-34246065 None:intergenic 40.0%
!! GGAGAGTATTAGAGGTCAAA+AGG + chr1_3:34246057-34246076 None:intergenic 40.0%
! CTGGCTAGTTAAATGTGAGT+CGG + chr1_3:34246078-34246097 None:intergenic 40.0%
! AAGAAGCGTGCTACATCAAA+AGG + chr1_3:34246171-34246190 None:intergenic 40.0%
CAAGATACTTGTGGGAAACA+AGG - chr1_3:34246252-34246271 Msa0115370:intron 40.0%
CTTGACATCTTAGCTGTTTG+GGG - chr1_3:34246330-34246349 Msa0115370:intron 40.0%
GCCCATACCACATTTACTTA+CGG - chr1_3:34246397-34246416 Msa0115370:intron 40.0%
CTCAGATCCGTAAGTAAATG+TGG + chr1_3:34246407-34246426 None:intergenic 40.0%
!! AGACACTGTTTCTAGTACTG+AGG - chr1_3:34246713-34246732 Msa0115370:intron 40.0%
TGCATAAACTTCCACTTCTG+AGG + chr1_3:34246776-34246795 None:intergenic 40.0%
CAAGATTAACCAACAAGACC+AGG - chr1_3:34246972-34246991 Msa0115370:exon 40.0%
! GTGCAGGAGTATGAAAGTGT+TGG - chr1_3:34243683-34243702 Msa0115370:three_prime_UTR 45.0%
CATCTCTATTACCCGGGTTA+TGG + chr1_3:34244293-34244312 None:intergenic 45.0%
! AAATCCTCAACGAGGTTGGT+GGG + chr1_3:34244718-34244737 None:intergenic 45.0%
TAAATCCTCAACGAGGTTGG+TGG + chr1_3:34244719-34244738 None:intergenic 45.0%
AGCGGTGAACCAATTGTGAT+TGG + chr1_3:34244833-34244852 None:intergenic 45.0%
ACAAGGCCATCAAATTGCAG+CGG + chr1_3:34244851-34244870 None:intergenic 45.0%
! CCCAATGGTGGTGATAAAAC+TGG + chr1_3:34245009-34245028 None:intergenic 45.0%
GCGTTTGCCATCAAGTTCAA+TGG + chr1_3:34245616-34245635 None:intergenic 45.0%
! TTGCAAATTTGGGACACAGC+TGG - chr1_3:34245642-34245661 Msa0115370:intron 45.0%
GTTCATTTGGTCCCATACAC+TGG - chr1_3:34245743-34245762 Msa0115370:intron 45.0%
AGCTTATTATCGTGGAGCCA+TGG - chr1_3:34245845-34245864 Msa0115370:intron 45.0%
GCTTATTATCGTGGAGCCAT+GGG - chr1_3:34245846-34245865 Msa0115370:intron 45.0%
GTAAACCAGCAAGATACCCA+TGG + chr1_3:34245865-34245884 None:intergenic 45.0%
!! TGTGAGTCGGAGAGTATTAG+AGG + chr1_3:34246065-34246084 None:intergenic 45.0%
TGTGGGAAACAAGGCTGATA+TGG - chr1_3:34246261-34246280 Msa0115370:intron 45.0%
! TCTTAGCTGTTTGGGGTATG+AGG - chr1_3:34246337-34246356 Msa0115370:intron 45.0%
ATCAGCAAGAGCTTGACCTT+TGG + chr1_3:34246515-34246534 None:intergenic 45.0%
CAAGCTCTTGCTGATGAGTA+TGG - chr1_3:34246520-34246539 Msa0115370:intron 45.0%
TGGTCAGGCTGCACAAAAAT+CGG - chr1_3:34247005-34247024 Msa0115370:five_prime_UTR 45.0%
ACTCCTGCACACACCAGATT+CGG + chr1_3:34243673-34243692 None:intergenic 50.0%
GTTGGCGACATGGAATGGAA+TGG + chr1_3:34243834-34243853 None:intergenic 50.0%
TCGTTGTTGGCGACATGGAA+TGG + chr1_3:34243839-34243858 None:intergenic 50.0%
GCTATTCGTTGTTGGCGACA+TGG + chr1_3:34243844-34243863 None:intergenic 50.0%
CACAGCACAGAGATCGGAAT+CGG + chr1_3:34243884-34243903 None:intergenic 50.0%
CCAAAGCACAGCACAGAGAT+CGG + chr1_3:34243890-34243909 None:intergenic 50.0%
CTTCTTCTTATCGGCGACAG+TGG - chr1_3:34243979-34243998 Msa0115370:intron 50.0%
!!! AACGAGGTTGGTGGGTCTTT+TGG + chr1_3:34244710-34244729 None:intergenic 50.0%
GGTTCACCGCTGCAATTTGA+TGG - chr1_3:34244842-34244861 Msa0115370:intron 50.0%
! AATTTGGGACACAGCTGGTC+AGG - chr1_3:34245647-34245666 Msa0115370:intron 50.0%
AAACGGGTATGTCCATCTCG+AGG - chr1_3:34246292-34246311 Msa0115370:intron 50.0%
AAGTAGAAAGGGCCTCGAGA+TGG + chr1_3:34246307-34246326 None:intergenic 50.0%
TAGGCTGTACCTACCTCCAA+AGG - chr1_3:34246496-34246515 Msa0115370:intron 50.0%
! AGAGCTTGACCTTTGGAGGT+AGG + chr1_3:34246508-34246527 None:intergenic 50.0%
AGCAAGAGCTTGACCTTTGG+AGG + chr1_3:34246512-34246531 None:intergenic 50.0%
!! GCACAAAAATCGGCTTGCTG+CGG - chr1_3:34247015-34247034 Msa0115370:five_prime_UTR 50.0%
!! AATCGGCTTGCTGCGGTTAA+CGG - chr1_3:34247022-34247041 Msa0115370:five_prime_UTR 50.0%
! GGACTGGTATACTTTGCACG+TGG + chr1_3:34247284-34247303 None:intergenic 50.0%
CGCAGAGAGAGAGAGAGAGA+GGG - chr1_3:34243730-34243749 Msa0115370:three_prime_UTR 55.0%
GCAGAGAGAGAGAGAGAGAG+GGG - chr1_3:34243731-34243750 Msa0115370:three_prime_UTR 55.0%
CCGATCTCTGTGCTGTGCTT+TGG - chr1_3:34243887-34243906 Msa0115370:CDS 55.0%
TAATCGGCACGAGCTCTTGC+AGG + chr1_3:34243943-34243962 None:intergenic 55.0%
! AACCATGGGTGCCACGAGAA+TGG - chr1_3:34244543-34244562 Msa0115370:intron 55.0%
!!! GGTTGGTGGGTCTTTTGGCA+TGG + chr1_3:34244705-34244724 None:intergenic 55.0%
AAGACCCACCAACCTCGTTG+AGG - chr1_3:34244711-34244730 Msa0115370:intron 55.0%
TGGAGCCATGGGTATCTTGC+TGG - chr1_3:34245857-34245876 Msa0115370:intron 55.0%
!! CATTGGCTGCCTGGTCTTGT+TGG + chr1_3:34246984-34247003 None:intergenic 55.0%
CAACAAGACCAGGCAGCCAA+TGG - chr1_3:34246982-34247001 Msa0115370:exon 55.0%
TTGTGCAGCCTGACCACCAT+TGG + chr1_3:34247001-34247020 None:intergenic 55.0%
GCGCAGAGAGAGAGAGAGAG+AGG - chr1_3:34243729-34243748 Msa0115370:three_prime_UTR 60.0%
TGCCATTCTCGTGGCACCCA+TGG + chr1_3:34244548-34244567 None:intergenic 60.0%
CACGGCAACTGCCATTCTCG+TGG + chr1_3:34244557-34244576 None:intergenic 60.0%
CACGAGAATGGCAGTTGCCG+TGG - chr1_3:34244555-34244574 Msa0115370:intron 60.0%
CAAGACCAGGCAGCCAATGG+TGG - chr1_3:34246985-34247004 Msa0115370:exon 60.0%
GAAGAGGGTGGGGCCGAATC+TGG - chr1_3:34243657-34243676 Msa0115370:three_prime_UTR 65.0%
GGGCCGAATCTGGTGTGTGC+AGG - chr1_3:34243667-34243686 Msa0115370:three_prime_UTR 65.0%
! CCTGACCACCATTGGCTGCC+TGG + chr1_3:34246993-34247012 None:intergenic 65.0%
CCAGGCAGCCAATGGTGGTC+AGG - chr1_3:34246990-34247009 Msa0115370:five_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 34243608 34247305 34243608 ID=Msa0115370;Name=Msa0115370
chr1_3 mRNA 34243608 34247305 34243608 ID=Msa0115370-mRNA-1;Parent=Msa0115370;Name=Msa0115370-mRNA-1;_AED=0.07;_eAED=0.07;_QI=320|1|1|1|1|1|8|264|215
chr1_3 exon 34243608 34243952 34243608 ID=Msa0115370-mRNA-1:exon:10786;Parent=Msa0115370-mRNA-1
chr1_3 exon 34244179 34244271 34244179 ID=Msa0115370-mRNA-1:exon:10785;Parent=Msa0115370-mRNA-1
chr1_3 exon 34244352 34244414 34244352 ID=Msa0115370-mRNA-1:exon:10784;Parent=Msa0115370-mRNA-1
chr1_3 exon 34244616 34244713 34244616 ID=Msa0115370-mRNA-1:exon:10783;Parent=Msa0115370-mRNA-1
chr1_3 exon 34245001 34245066 34245001 ID=Msa0115370-mRNA-1:exon:10782;Parent=Msa0115370-mRNA-1
chr1_3 exon 34245220 34245320 34245220 ID=Msa0115370-mRNA-1:exon:10781;Parent=Msa0115370-mRNA-1
chr1_3 exon 34245886 34245958 34245886 ID=Msa0115370-mRNA-1:exon:10780;Parent=Msa0115370-mRNA-1
chr1_3 exon 34246913 34247305 34246913 ID=Msa0115370-mRNA-1:exon:10779;Parent=Msa0115370-mRNA-1
chr1_3 five_prime_UTR 34246986 34247305 34246986 ID=Msa0115370-mRNA-1:five_prime_utr;Parent=Msa0115370-mRNA-1
chr1_3 CDS 34246913 34246985 34246913 ID=Msa0115370-mRNA-1:cds;Parent=Msa0115370-mRNA-1
chr1_3 CDS 34245886 34245958 34245886 ID=Msa0115370-mRNA-1:cds;Parent=Msa0115370-mRNA-1
chr1_3 CDS 34245220 34245320 34245220 ID=Msa0115370-mRNA-1:cds;Parent=Msa0115370-mRNA-1
chr1_3 CDS 34245001 34245066 34245001 ID=Msa0115370-mRNA-1:cds;Parent=Msa0115370-mRNA-1
chr1_3 CDS 34244616 34244713 34244616 ID=Msa0115370-mRNA-1:cds;Parent=Msa0115370-mRNA-1
chr1_3 CDS 34244352 34244414 34244352 ID=Msa0115370-mRNA-1:cds;Parent=Msa0115370-mRNA-1
chr1_3 CDS 34244179 34244271 34244179 ID=Msa0115370-mRNA-1:cds;Parent=Msa0115370-mRNA-1
chr1_3 CDS 34243872 34243952 34243872 ID=Msa0115370-mRNA-1:cds;Parent=Msa0115370-mRNA-1
chr1_3 three_prime_UTR 34243608 34243871 34243608 ID=Msa0115370-mRNA-1:three_prime_utr;Parent=Msa0115370-mRNA-1
Gene Sequence

>Msa0115370

ATGGCAGCAGCACCTGCAAGAGCTCGTGCCGATTACGATTACCTCATCAAGCTTCTTCTTATCGGCGACAGTGGTGTGGGGAAGAGTTGTTTGCTTTTGAGGTTTTCTGATGGCTCCTTCACAACCAGTTTTATCACCACCATTGGCATTGATTTCAAGATAAGAACCATTGAACTTGATGGCAAACGCATTAAGTTGCAAATTTGGGACACAGCTGGTCAGGAGAGATTCCGAACTATTACTACAGCTTATTATCGTGGAGCCATGGGTATCTTGCTGGTTTACGATGTTACTGATGAAGCTTCTTTCAATAATATTAGGAATTGGATTCGCAATATTGAACAACATGCTTCTGACAATGTAAACAAGATACTTGTGGGAAACAAGGCTGATATGGATGAAAGTAAACGGGCTGTACCTACCTCCAAAGGTCAAGCTCTTGCTGATGAGTATGGTATCAAGTTCTTTGAAACTAGTGCAAAAACAAACATGAATGTGGAGGAAATTTTCTTTTCAATAGCAAGAGATATCAAGCAAAGGCTTGCAGACACTGTTTCTAGTACTGAGCCCCAGAGTATCAAGATTAACCAACAAGACCAGGCAGCCAATGGTGGTCAGGCTGCACAAAAATCGGCTTGCTGCGGTTAA
Protein sequence

>Msa0115370

MAAAPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNMNVEEIFFSIARDIKQRLADTVSSTEPQSIKINQQDQAANGGQAAQKSACCG*