AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0557290

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0557290 MtrunA17_Chr4g0046371 95.892 706 21 3 1 703 1 701 0.0 1397
Msa0557290 MtrunA17_Chr2g0282961 76.957 447 88 4 2 436 1 444 0.0 686
Msa0557290 MtrunA17_Chr2g0282961 40.385 208 96 11 468 652 408 610 3.15e-25 110
Msa0557290 MtrunA17_Chr4g0029671 51.429 490 196 11 42 504 53 527 1.90e-148 451
Msa0557290 MtrunA17_Chr2g0326281 41.527 655 332 15 42 661 55 693 1.70e-145 444
Msa0557290 MtrunA17_Chr8g0385791 47.319 429 195 6 18 434 41 450 1.57e-124 390
Msa0557290 MtrunA17_Chr2g0276781 48.354 395 178 7 22 405 2 381 1.04e-116 365
Msa0557290 MtrunA17_Chr4g0009751 44.954 436 204 11 43 466 19 430 1.35e-112 353
Msa0557290 MtrunA17_Chr5g0433301 48.031 381 166 6 33 397 12 376 1.34e-109 351
Msa0557290 MtrunA17_Chr2g0285461 49.206 378 159 8 43 404 23 383 1.73e-109 352
Msa0557290 MtrunA17_Chr8g0346711 48.907 366 163 9 43 400 29 378 5.18e-107 340
Msa0557290 MtrunA17_Chr8g0376771 48.387 372 170 7 43 404 23 382 9.86e-107 345
Msa0557290 MtrunA17_Chr3g0109391 48.257 373 161 6 41 397 22 378 1.15e-106 343
Msa0557290 MtrunA17_Chr2g0301251 49.176 364 165 5 25 380 5 356 1.53e-105 346
Msa0557290 MtrunA17_Chr4g0070181 48.485 363 165 6 27 380 7 356 6.95e-105 345
Msa0557290 MtrunA17_Chr7g0239061 42.925 424 205 9 32 443 3 401 2.85e-104 333
Msa0557290 MtrunA17_Chr1g0156321 47.568 370 160 7 43 397 43 393 2.87e-104 337
Msa0557290 MtrunA17_Chr8g0389081 48.034 356 147 6 43 380 32 367 2.10e-100 332
Msa0557290 MtrunA17_Chr2g0326761 41.316 380 165 9 43 379 11 375 3.56e-84 280
Msa0557290 MtrunA17_Chr1g0199681 40.420 381 178 10 38 379 87 457 1.22e-79 268
Msa0557290 MtrunA17_Chr1g0181211 34.381 541 270 18 41 508 23 551 1.26e-79 268
Msa0557290 MtrunA17_Chr4g0028971 39.005 382 177 7 43 379 12 382 2.43e-75 256
Msa0557290 MtrunA17_Chr7g0264171 37.596 391 183 12 39 379 27 406 8.84e-72 244
Msa0557290 MtrunA17_Chr8g0356211 42.264 265 140 4 159 421 2 255 2.10e-66 221
Msa0557290 MtrunA17_Chr7g0264161 40.064 312 173 6 52 360 1 301 3.44e-66 220
Msa0557290 MtrunA17_Chr3g0115271 35.732 403 205 9 36 399 12 399 3.16e-62 218
Msa0557290 MtrunA17_Chr5g0417281 35.652 345 190 8 43 379 11 331 4.03e-62 216
Msa0557290 MtrunA17_Chr5g0424931 33.693 371 190 11 43 379 19 367 7.30e-58 204
Msa0557290 MtrunA17_Chr2g0289221 33.626 342 191 9 29 360 6 321 1.83e-51 182
Msa0557290 MtrunA17_Chr1g0178011 29.275 345 218 7 43 379 12 338 1.43e-48 177
Msa0557290 MtrunA17_Chr5g0417211 32.727 330 185 9 43 361 12 315 8.34e-48 174
Msa0557290 MtrunA17_Chr5g0436761 32.174 345 206 9 43 379 12 336 1.45e-46 172
Msa0557290 MtrunA17_Chr2g0277461 31.549 355 204 10 38 379 8 336 1.41e-42 160
Msa0557290 MtrunA17_Chr5g0424801 29.477 363 217 12 43 389 12 351 4.96e-39 148
Msa0557290 MtrunA17_Chr5g0424741 29.600 375 226 12 43 385 12 380 1.24e-37 147
Msa0557290 MtrunA17_Chr5g0425261 29.477 363 217 12 43 389 12 351 1.80e-36 141
Msa0557290 MtrunA17_Chr5g0425661 33.480 227 125 5 31 248 25 234 4.61e-34 130
Msa0557290 MtrunA17_Chr2g0277531 31.126 302 167 11 38 324 15 290 4.06e-32 127
Msa0557290 MtrunA17_Chr5g0424791 29.487 156 90 5 90 245 14 149 2.08e-12 65.5
Msa0557290 MtrunA17_Chr7g0276471 40.217 92 54 1 149 240 116 206 2.76e-12 69.7
Msa0557290 MtrunA17_Chr8g0345771 40.206 97 56 2 149 245 170 264 4.73e-12 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0557290 AT2G33860.1 56.840 519 180 7 1 507 1 487 0.0 575
Msa0557290 AT5G60450.2 41.789 682 309 17 5 651 3 631 1.40e-146 446
Msa0557290 AT5G60450.1 42.857 644 280 17 43 651 65 655 8.00e-143 437
Msa0557290 AT2G33860.2 57.660 359 122 2 150 507 1 330 3.37e-140 419
Msa0557290 AT5G62000.2 43.946 446 222 5 3 434 21 452 5.19e-122 385
Msa0557290 AT5G62000.5 43.946 446 222 5 3 434 21 452 5.19e-122 385
Msa0557290 AT5G62000.3 43.946 446 222 5 3 434 21 452 5.19e-122 385
Msa0557290 AT5G62000.1 43.946 446 222 5 3 434 21 452 5.19e-122 385
Msa0557290 AT5G62000.4 43.946 446 222 5 3 434 21 452 9.32e-122 384
Msa0557290 AT1G59750.4 47.520 383 167 6 20 389 2 363 2.51e-112 353
Msa0557290 AT1G59750.1 47.520 383 167 6 20 389 2 363 2.72e-112 353
Msa0557290 AT1G59750.3 47.520 383 167 6 20 389 2 363 2.72e-112 353
Msa0557290 AT1G59750.2 47.520 383 167 6 20 389 2 363 2.85e-112 353
Msa0557290 AT5G37020.2 46.056 393 173 8 22 397 4 374 7.29e-106 340
Msa0557290 AT2G46530.3 46.791 374 161 9 31 387 27 379 1.31e-105 335
Msa0557290 AT2G46530.1 47.354 359 154 8 43 387 21 358 1.99e-105 334
Msa0557290 AT1G19220.1 49.176 364 165 5 25 380 5 356 2.29e-105 346
Msa0557290 AT1G30330.1 48.541 377 163 6 43 404 23 383 2.69e-105 342
Msa0557290 AT5G37020.1 47.326 374 163 7 41 397 18 374 2.80e-105 339
Msa0557290 AT1G30330.3 48.541 377 163 6 43 404 25 385 3.13e-105 342
Msa0557290 AT1G30330.2 48.541 377 163 6 43 404 25 385 3.13e-105 342
Msa0557290 AT3G61830.1 45.288 382 177 7 43 410 25 388 4.53e-105 333
Msa0557290 AT4G23980.2 47.324 355 159 7 37 380 6 343 5.06e-105 334
Msa0557290 AT4G23980.1 47.324 355 159 7 37 380 6 343 6.06e-105 333
Msa0557290 AT1G19850.2 49.008 353 146 8 43 379 43 377 6.48e-102 332
Msa0557290 AT1G19850.1 49.008 353 146 8 43 379 54 388 7.98e-102 332
Msa0557290 AT5G20730.2 48.305 354 163 5 35 380 16 357 4.49e-100 333
Msa0557290 AT5G20730.3 48.169 355 163 6 35 380 16 358 1.25e-98 328
Msa0557290 AT5G20730.1 48.169 355 163 6 35 380 16 358 1.80e-98 328
Msa0557290 AT3G61830.2 46.828 331 157 5 84 410 22 337 4.38e-93 300
Msa0557290 AT1G35540.1 42.507 367 168 8 29 379 13 352 8.81e-91 295
Msa0557290 AT1G35240.1 43.213 361 174 8 29 379 13 352 2.26e-90 294
Msa0557290 AT1G34170.1 41.463 369 186 7 43 402 25 372 6.67e-90 290
Msa0557290 AT1G34410.1 35.769 520 271 16 29 526 13 491 2.36e-89 291
Msa0557290 AT1G34390.1 42.936 361 173 9 29 379 13 350 2.00e-88 289
Msa0557290 AT1G34310.1 42.382 361 177 9 29 379 13 352 1.60e-86 284
Msa0557290 AT1G35520.1 42.655 354 172 8 36 379 20 352 3.76e-86 283
Msa0557290 AT2G46530.2 54.622 238 104 3 151 387 37 271 4.99e-83 272
Msa0557290 AT5G37020.3 53.815 249 113 2 151 397 31 279 2.34e-82 276
Msa0557290 AT2G28350.2 38.200 411 200 8 43 410 10 409 1.69e-81 272
Msa0557290 AT2G28350.1 38.200 411 200 8 43 410 10 409 2.61e-81 273
Msa0557290 AT4G30080.1 40.323 372 180 7 43 379 19 383 1.66e-78 265
Msa0557290 AT1G34170.2 38.482 369 171 7 43 402 25 346 1.83e-77 256
Msa0557290 AT1G34170.3 38.482 369 171 7 43 402 25 346 8.20e-77 257
Msa0557290 AT1G77850.2 33.499 403 212 8 44 412 20 400 1.20e-62 220
Msa0557290 AT1G77850.1 33.499 403 212 8 44 412 20 400 1.27e-62 219
Msa0557290 AT1G43950.1 43.421 228 105 6 29 250 13 222 1.33e-51 179
Msa0557290 AT2G46870.1 35.833 120 71 2 149 263 33 151 1.22e-13 72.8
Msa0557290 AT1G01030.2 40.217 92 54 1 149 240 54 144 4.83e-13 71.2
Msa0557290 AT1G01030.1 40.217 92 54 1 149 240 54 144 6.15e-13 71.2
Msa0557290 AT4G01500.1 39.130 92 53 1 149 240 34 122 8.10e-13 70.9
Msa0557290 AT3G25730.1 26.132 287 166 10 2 249 4 283 8.41e-12 67.8
Msa0557290 AT1G13260.1 25.547 274 165 9 14 250 18 289 4.31e-11 65.5
Msa0557290 AT1G68840.2 34.127 126 78 3 128 249 163 287 7.12e-11 65.1
Msa0557290 AT1G68840.1 34.127 126 78 3 128 249 163 287 7.12e-11 65.1

Find 205 sgRNAs with CRISPR-Local

Find 386 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATCTTGTATGCACTGTTTA+TGG 0.086360 4_1:+55616019 Msa0557290:three_prime_UTR
AAGCATTAACTATGTCTTTA+AGG 0.125975 4_1:-55612908 None:intergenic
CTTGACCTTGCAAGACCTTC+TGG 0.208058 4_1:-55614732 None:intergenic
CTTGACCTTGCAAGACCTTC+TGG 0.215232 4_1:-55614939 None:intergenic
TTCATCAAAGCTAGAGTTTC+CGG 0.216516 4_1:+55614567 Msa0557290:CDS
ATAAGCCTCACCTCACTTTC+AGG 0.220982 4_1:-55611750 None:intergenic
GGTGCTGTTGGTTCTGGTTC+TGG 0.228992 4_1:+55611127 Msa0557290:CDS
AAAGAAACAAAAGGAAAATT+TGG 0.230989 4_1:+55610776 Msa0557290:five_prime_UTR
ACAACTACACTTCCTTTCTT+TGG 0.249661 4_1:-55611205 None:intergenic
TTCTGGTTCTTCTGTTTGTT+TGG 0.296671 4_1:+55611144 Msa0557290:CDS
ATTCCTCTAACAGGTAGAAT+TGG 0.305603 4_1:+55614679 Msa0557290:intron
CTGCCTCAACGCCAACTAAT+AGG 0.307928 4_1:+55615232 Msa0557290:CDS
AGATTCACAGGATTGATTAT+TGG 0.316607 4_1:+55613286 Msa0557290:intron
AGTGTTGGTGCTGTTGGTTC+TGG 0.317923 4_1:+55611121 Msa0557290:CDS
ACATTTAACTTAAGGCAAAT+TGG 0.319681 4_1:+55615969 Msa0557290:three_prime_UTR
GACCATCCATTTGTGGATCT+TGG 0.321293 4_1:-55615057 None:intergenic
CTTCTGTTTGTTTGGAGCTA+TGG 0.324256 4_1:+55611152 Msa0557290:CDS
GAATTGGGACATCAGACTTT+GGG 0.338470 4_1:+55614695 Msa0557290:CDS
TGAGCTAGCCCGCGGAAAAT+AGG 0.340511 4_1:-55615255 None:intergenic
GATGTTTCCTGCAATGGCTT+TGG 0.342344 4_1:+55614901 Msa0557290:CDS
GGCTACCAAGATTCAATTGC+TGG 0.343727 4_1:-55612887 None:intergenic
AATCCATGGTTGACGCTTGC+TGG 0.351834 4_1:-55615128 None:intergenic
ACTCAGTTGGAATGAGGTTC+AGG 0.363746 4_1:+55613151 Msa0557290:CDS
AACAAGAAGAAACTTGTATC+TGG 0.365188 4_1:+55612678 Msa0557290:CDS
TTTGATCCAGGCCATCTAAC+AGG 0.365768 4_1:-55613325 None:intergenic
TTAAGTTAAATGTCTAAATT+CGG 0.369293 4_1:-55615959 None:intergenic
ACCTCTGTAATTCAGATAAC+TGG 0.374442 4_1:-55614807 None:intergenic
TGGTACACATTCACGCGATT+TGG 0.374841 4_1:+55615296 Msa0557290:CDS
CAAGATTCTCTTCACTATGA+TGG 0.382293 4_1:+55611024 Msa0557290:exon
TTAGATGGCCTGGATCAAAA+TGG 0.391526 4_1:+55613329 Msa0557290:CDS
TGGAAGCTTCAAGGCTCAAC+AGG 0.392327 4_1:+55614452 Msa0557290:CDS
GGAAGATGGCGAATTGAGAT+TGG 0.400560 4_1:+55612809 Msa0557290:CDS
GAAGATGAAACACCTTCTTC+TGG 0.400643 4_1:+55611073 Msa0557290:CDS
AAAAGTAGCTGCAGAGTGTT+TGG 0.401467 4_1:+55615360 Msa0557290:CDS
ACAGAAAAGGCTTGTCCATA+TGG 0.405325 4_1:-55614979 None:intergenic
GAATTTAGACATTTAACTTA+AGG 0.405601 4_1:+55615961 Msa0557290:three_prime_UTR
GTCAACGAGGCTTGTAGAAA+TGG 0.411503 4_1:+55615000 Msa0557290:CDS
GCTTGTAGAAATGGTCGCTT+TGG 0.413112 4_1:+55615009 Msa0557290:CDS
CGAAGATTGCTTTCCTCCCC+TGG 0.414436 4_1:+55612279 Msa0557290:CDS
ATTCTTTCTTGTAATAACTT+AGG 0.416838 4_1:+55615903 Msa0557290:three_prime_UTR
AGGGAGGTCCAGGATTTATC+TGG 0.416845 4_1:-55615446 None:intergenic
TTCTTTGGCAAAGAGATCAT+AGG 0.418004 4_1:-55611190 None:intergenic
TTCCACCACCAATAGCTTGA+TGG 0.422972 4_1:+55614510 Msa0557290:CDS
TTCTGCATCTTTATTTGCAA+TGG 0.425772 4_1:-55615406 None:intergenic
ACTAGTTGCCATCAAGCTAT+TGG 0.429653 4_1:-55614518 None:intergenic
GTTTCCTGTTGAAGCGATCC+CGG 0.430395 4_1:-55614851 None:intergenic
GAGCTATGGCATGCTTGTGC+TGG 0.433793 4_1:+55611166 Msa0557290:CDS
TCTGCATCTTTATTTGCAAT+GGG 0.433846 4_1:-55615405 None:intergenic
GTGGATCCTGTTAGATGGCC+TGG 0.434675 4_1:+55613319 Msa0557290:CDS
CTTGTGAAGGAGGGAGGTCC+AGG 0.435662 4_1:-55615456 None:intergenic
CATAGAACGAACCTCTTTGA+AGG 0.445028 4_1:-55615185 None:intergenic
TTGAGGGAAGGGGTAATTGA+TGG 0.447627 4_1:+55612127 Msa0557290:CDS
CTTGCAAGACCTTCTGGAAT+CGG 0.448674 4_1:-55614933 None:intergenic
TAGTGGTTTCATAATAATGA+TGG 0.450518 4_1:-55610957 None:intergenic
GCAGAGAGCGTGAAGAACTT+TGG 0.455795 4_1:-55610889 None:intergenic
AATTCTGATGTTTCCTGCAA+TGG 0.460396 4_1:+55614895 Msa0557290:CDS
AGATTCACCAAAGCCATTGC+AGG 0.460830 4_1:-55614908 None:intergenic
CTGAGAAGACCATCCATTTG+TGG 0.461406 4_1:-55615064 None:intergenic
GGTGTATTGTCAGGTGTTGT+TGG 0.462932 4_1:+55611725 Msa0557290:CDS
TTCTCAAGAGCTTGTGGCAA+AGG 0.463759 4_1:+55612468 Msa0557290:CDS
AGAATTGGGACATCAGACTT+TGG 0.468381 4_1:+55614694 Msa0557290:CDS
GTCGTAAGCAAATGCCTTCG+TGG 0.468733 4_1:-55612636 None:intergenic
TATGTCGAAACTTCCATTCC+TGG 0.469434 4_1:-55612501 None:intergenic
CTTGATTATTCTTACTCAGT+TGG 0.470525 4_1:+55613138 Msa0557290:CDS
AAACATCAGAATTCATTTGT+GGG 0.471506 4_1:-55614885 None:intergenic
CATGAAGACATGAACTCGTT+TGG 0.472406 4_1:+55615276 Msa0557290:CDS
TCCGGCCAGCAATTGAATCT+TGG 0.475283 4_1:+55612882 Msa0557290:CDS
TATCCCGGGATCGCTTCAAC+AGG 0.477815 4_1:+55614847 Msa0557290:CDS
TCATCTTCAAGTACAAGTAT+AGG 0.478694 4_1:+55611097 Msa0557290:CDS
ATGATCTCTTTGCCAAAGAA+AGG 0.480251 4_1:+55611193 Msa0557290:CDS
TTCCTCTAACAGGTAGAATT+GGG 0.480587 4_1:+55614680 Msa0557290:intron
CTGATGTGGATCCTGTTAGA+TGG 0.481986 4_1:+55613314 Msa0557290:CDS
TTTCCTGTTGAAGCGATCCC+GGG 0.482214 4_1:-55614850 None:intergenic
AAGATTCTCTTCACTATGAT+GGG 0.485635 4_1:+55611025 Msa0557290:exon
AGTTTGAAGAGGACCAAGAC+TGG 0.486097 4_1:+55614538 Msa0557290:CDS
ACAAGCCTCGTTGACAGAAA+AGG 0.486107 4_1:-55614992 None:intergenic
AATTGAGACATACTGGGAAC+CGG 0.486594 4_1:-55614586 None:intergenic
GAAACATCAGAATTCATTTG+TGG 0.487206 4_1:-55614886 None:intergenic
TTACTTCCCTCAAGGACACT+TGG 0.489214 4_1:+55611228 Msa0557290:CDS
ATACTTCCTAGCCAACCATA+TGG 0.494849 4_1:+55614964 Msa0557290:CDS
CGAAGGCATTTGCTTACGAC+TGG 0.494928 4_1:+55612639 Msa0557290:CDS
CTCATCATTTCAGGTAAGGT+GGG 0.495255 4_1:+55614423 Msa0557290:intron
GATCCCGGGATAGGTTGAAC+CGG 0.495352 4_1:-55614836 None:intergenic
GTCACTTGCCAGATAAATCC+TGG 0.495971 4_1:+55615438 Msa0557290:CDS
TTATAATAACAAAATTAATC+CGG 0.498479 4_1:+55615149 Msa0557290:CDS
CCTCAAGCCAGCATCAGTCT+TGG 0.498880 4_1:-55615841 None:intergenic
TGTTGAAGCGATCCCGGGAT+AGG 0.500591 4_1:-55614845 None:intergenic
GGGATGACATGGAAGCTTCA+AGG 0.501986 4_1:+55614443 Msa0557290:CDS
TGATGAAGGCAATCCAGTCT+TGG 0.502883 4_1:-55614551 None:intergenic
ATTTGCAATGGGAGCACCCT+CGG 0.505296 4_1:-55615394 None:intergenic
AGTGTTGTTTATTGTTGTAG+TGG 0.506607 4_1:-55610974 None:intergenic
TTGCTCCGAAGTGAATGCCT+TGG 0.507472 4_1:-55615501 None:intergenic
CCATGGGAGATTGAGCCCTC+AGG 0.508458 4_1:+55614481 Msa0557290:CDS
CAACTGAGTAAGAATAATCA+AGG 0.509968 4_1:-55613137 None:intergenic
CCAAAAGCCCATTCAGTGAG+AGG 0.511282 4_1:+55610723 Msa0557290:intron
TGAAGGACGTTATCCTCCAC+CGG 0.511378 4_1:-55615168 None:intergenic
ATAGGTAGTGTTGGTGCTGT+TGG 0.511774 4_1:+55611115 Msa0557290:CDS
GAAGATGGCGAATTGAGATT+GGG 0.515498 4_1:+55612810 Msa0557290:CDS
ATTCTTACTCAGTTGGAATG+AGG 0.516705 4_1:+55613145 Msa0557290:CDS
TGCCATCAAGCTATTGGTGG+TGG 0.517515 4_1:-55614512 None:intergenic
GAACGATGAGGTGTATTGTC+AGG 0.518104 4_1:+55611716 Msa0557290:CDS
AGTGAAAGCAGTGAGTGAGT+GGG 0.520072 4_1:+55610804 Msa0557290:five_prime_UTR
TATGCTTCTGAAATGAAAGA+TGG 0.522167 4_1:+55615204 Msa0557290:CDS
GATATCGAGGTGCATCATAT+AGG 0.522430 4_1:-55616043 None:intergenic
GGCAAAGGATCTGCATGGCC+AGG 0.523545 4_1:+55612483 Msa0557290:CDS
ACAATTGATAGAGGGGAAGA+TGG 0.524609 4_1:+55612795 Msa0557290:intron
GAGTGAAAGCAGTGAGTGAG+TGG 0.524756 4_1:+55610803 Msa0557290:five_prime_UTR
CAGGGGAGGAAAGCAATCTT+CGG 0.526886 4_1:-55612278 None:intergenic
GCAAGTGCAACAAAAGTTGA+GGG 0.527829 4_1:+55612111 Msa0557290:intron
TCTCATCATTTCAGGTAAGG+TGG 0.529211 4_1:+55614422 Msa0557290:intron
CATTTGTGGATCTTGGCACC+TGG 0.529771 4_1:-55615050 None:intergenic
TGCTGGTACATCAACACTGA+TGG 0.534225 4_1:-55615111 None:intergenic
AGGATCTGCATGGCCAGGAA+TGG 0.534269 4_1:+55612488 Msa0557290:CDS
TATCCCGGTTCAACCTATCC+CGG 0.534428 4_1:+55614832 Msa0557290:CDS
GCTTGTCCATATGGTTGGCT+AGG 0.536411 4_1:-55614970 None:intergenic
ATGCATGCCAAGACTGATGC+TGG 0.536421 4_1:+55615834 Msa0557290:three_prime_UTR
GGCATTTGCTTACGACTGGA+TGG 0.537671 4_1:+55612643 Msa0557290:CDS
AATTGAGATTGGGAATCCGC+AGG 0.541630 4_1:+55612820 Msa0557290:CDS
GATGTTCCAAGTGTCCTTGA+GGG 0.542111 4_1:-55611234 None:intergenic
CGATTCCAGAAGGTCTTGCA+AGG 0.542383 4_1:+55614934 Msa0557290:CDS
AGCAAGTGCAACAAAAGTTG+AGG 0.542657 4_1:+55612110 Msa0557290:intron
GAGATGCAGTTCTGTTCCTC+CGG 0.543261 4_1:+55612700 Msa0557290:CDS
TTCAACATGTCTTGTGAAGG+AGG 0.544875 4_1:-55615466 None:intergenic
AGCGTGAAGAACTTTGGCAT+TGG 0.545139 4_1:-55610883 None:intergenic
GCTCAACAGGGTTTCACCAT+GGG 0.545772 4_1:+55614465 Msa0557290:CDS
GAATTACAGAGGTGCTATCC+CGG 0.550009 4_1:+55614817 Msa0557290:CDS
GCTTCTGATACTAGCACTCA+TGG 0.551937 4_1:+55612229 Msa0557290:CDS
AAAAGGCTTGTCCATATGGT+TGG 0.552881 4_1:-55614975 None:intergenic
CGGAAAATAGGCCTATTAGT+TGG 0.553897 4_1:-55615243 None:intergenic
GTAGTTGTTTACTTCCCTCA+AGG 0.561222 4_1:+55611220 Msa0557290:CDS
ACAGAGAAGCGGTCAAGAGT+TGG 0.561254 4_1:+55615326 Msa0557290:CDS
TGCAACAAAAGTTGAGGGAA+GGG 0.561765 4_1:+55612116 Msa0557290:CDS
TGGATTGTAGCGTATGCTAA+AGG 0.562384 4_1:-55612946 None:intergenic
TCAATCCAAGGCATTCACTT+CGG 0.563879 4_1:+55615496 Msa0557290:CDS
CTTGAAGATGAACCAGAAGA+AGG 0.564461 4_1:-55611085 None:intergenic
TGGGAAGAGAAAGAGAAAGA+AGG 0.566687 4_1:+55610823 Msa0557290:five_prime_UTR
ATCCCGGTTCAACCTATCCC+GGG 0.568291 4_1:+55614833 Msa0557290:CDS
TTGAAGATGATTTCAATCCA+AGG 0.568841 4_1:+55615484 Msa0557290:CDS
AGTACAAGTATAGGTAGTGT+TGG 0.571181 4_1:+55611106 Msa0557290:CDS
TCAGGTAAGGTGGGATGACA+TGG 0.571901 4_1:+55614432 Msa0557290:intron
TTAGCATACGCTACAATCCA+AGG 0.573301 4_1:+55612949 Msa0557290:CDS
CTGAAGATGCTGCAGAGCGA+AGG 0.573424 4_1:+55613187 Msa0557290:CDS
ACCAAGATTCAATTGCTGGC+CGG 0.574219 4_1:-55612883 None:intergenic
CAGGTGCCAAGATCCACAAA+TGG 0.574271 4_1:+55615051 Msa0557290:CDS
ATCTTCAACATGTCTTGTGA+AGG 0.575530 4_1:-55615469 None:intergenic
GGAAACTCTAGCTTTGATGA+AGG 0.575774 4_1:-55614565 None:intergenic
AAGACCTTCTCAAGAGCTTG+TGG 0.576100 4_1:+55612462 Msa0557290:CDS
ATCTGGCAAGTGACCACAGA+GGG 0.576870 4_1:-55615429 None:intergenic
TAACAAAATTAATCCGGTGG+AGG 0.578416 4_1:+55615155 Msa0557290:CDS
AAGGCATTCACTTCGGAGCA+AGG 0.579813 4_1:+55615503 Msa0557290:CDS
GTAATTGATGGTGATGGTGA+TGG 0.584113 4_1:+55612139 Msa0557290:CDS
CCTGAGGGCTCAATCTCCCA+TGG 0.586174 4_1:-55614481 None:intergenic
GTGCAACAAAAGTTGAGGGA+AGG 0.588950 4_1:+55612115 Msa0557290:CDS
GCAACAAAAGTTGAGGGAAG+GGG 0.589038 4_1:+55612117 Msa0557290:CDS
GGAATCACTGCGGTTCCAGA+AGG 0.590895 4_1:+55614717 Msa0557290:CDS
GGCTCAACAGGGTTTCACCA+TGG 0.590908 4_1:+55614464 Msa0557290:CDS
GTGTTTGTGCAGGCTGAGGA+AGG 0.591079 4_1:+55611693 Msa0557290:intron
GATGGTGATGGTGATGGTGA+AGG 0.591326 4_1:+55612145 Msa0557290:CDS
TAAACACAGGGCAGCCACGA+AGG 0.595743 4_1:+55612622 Msa0557290:intron
AGTTGCCATCAAGCTATTGG+TGG 0.596259 4_1:-55614515 None:intergenic
TAATAACAAAATTAATCCGG+TGG 0.596313 4_1:+55615152 Msa0557290:CDS
TGAATCTTTCCGATTCCAGA+AGG 0.600033 4_1:+55614924 Msa0557290:CDS
CAATCTTCGGCTGCTCGACG+AGG 0.600698 4_1:-55612265 None:intergenic
CAAAAGCCCATTCAGTGAGA+GGG 0.603222 4_1:+55610724 Msa0557290:intron
AGATGTTCCAAGTGTCCTTG+AGG 0.604919 4_1:-55611235 None:intergenic
TGATGGCAACTAGTTTGAAG+AGG 0.608820 4_1:+55614527 Msa0557290:CDS
TGCCAAGATCCACAAATGGA+TGG 0.610246 4_1:+55615055 Msa0557290:CDS
TTTGCCACAAGCTCTTGAGA+AGG 0.610532 4_1:-55612466 None:intergenic
ATCCCGGGATAGGTTGAACC+GGG 0.611784 4_1:-55614835 None:intergenic
CGGTTCCAGAAGGTCTTGCA+AGG 0.612560 4_1:+55614727 Msa0557290:CDS
AGGCCTATTAGTTGGCGTTG+AGG 0.614103 4_1:-55615235 None:intergenic
AATTGGGACATCAGACTTTG+GGG 0.617990 4_1:+55614696 Msa0557290:CDS
ATTGAGATTGGGAATCCGCA+GGG 0.619618 4_1:+55612821 Msa0557290:CDS
CCAAGACTGATGCTGGCTTG+AGG 0.621608 4_1:+55615841 Msa0557290:three_prime_UTR
ACATGTCTTGTGAAGGAGGG+AGG 0.622871 4_1:-55615462 None:intergenic
GATTATTGGAATTACTGATG+TGG 0.625444 4_1:+55613300 Msa0557290:CDS
TCAACATGTCTTGTGAAGGA+GGG 0.630253 4_1:-55615465 None:intergenic
ACACGACAGAACACATGAGA+AGG 0.635081 4_1:-55611292 None:intergenic
TTGTGGATCTTGGCACCTGG+TGG 0.639384 4_1:-55615047 None:intergenic
GGAAGCTTCAAGGCTCAACA+GGG 0.640992 4_1:+55614453 Msa0557290:CDS
GACTGACATGCATGATATCG+AGG 0.641347 4_1:-55616056 None:intergenic
TTGGTTGCACTACAGAGAAG+CGG 0.648720 4_1:+55615315 Msa0557290:CDS
TCTGTAATTCAGATAACTGG+TGG 0.650832 4_1:-55614804 None:intergenic
GAAGGGGTAATTGATGGTGA+TGG 0.656136 4_1:+55612133 Msa0557290:CDS
TGTTTGTGCAGGCTGAGGAA+GGG 0.658620 4_1:+55611694 Msa0557290:intron
AGAGTCTTGCAGAACATGTG+AGG 0.659565 4_1:-55612202 None:intergenic
GTTGTTGGTTCCTGAAAGTG+AGG 0.660598 4_1:+55611740 Msa0557290:CDS
ATCAAAATGGAAATGCCTAG+TGG 0.661824 4_1:+55613342 Msa0557290:CDS
GTACCAGCAAGCGTCAACCA+TGG 0.662349 4_1:+55615125 Msa0557290:CDS
GATTGATCTCAACACTACTG+AGG 0.665345 4_1:+55611051 Msa0557290:CDS
TAAAGATGCAGAACCCTCTG+TGG 0.666324 4_1:+55615416 Msa0557290:CDS
GAGGATAACGTCCTTCAAAG+AGG 0.666492 4_1:+55615174 Msa0557290:CDS
CTCAAGGTAAGTACCAGGGG+AGG 0.666901 4_1:-55612292 None:intergenic
AAGTTTCGACATATATACAG+AGG 0.668664 4_1:+55612511 Msa0557290:CDS
TGATGGTGATGGTGAAGGCG+AGG 0.675186 4_1:+55612150 Msa0557290:CDS
GGTGGTGGAAGATGAGCCTG+AGG 0.683472 4_1:-55614497 None:intergenic
TGTCTTCATGAGCTAGCCCG+CGG 0.693463 4_1:-55615263 None:intergenic
ACCAGTTATCTGAATTACAG+AGG 0.702085 4_1:+55614806 Msa0557290:CDS
GGCTGAGGAAGGGAACGATG+AGG 0.721717 4_1:+55611704 Msa0557290:intron
CAGACTTTGGGGAATCACTG+CGG 0.730858 4_1:+55614707 Msa0557290:CDS
CTTGTGGCAAAGGATCTGCA+TGG 0.733217 4_1:+55612478 Msa0557290:CDS
TCTGATACTAGCACTCATGG+TGG 0.734262 4_1:+55612232 Msa0557290:CDS
GTGGTGGAAGATGAGCCTGA+GGG 0.740646 4_1:-55614496 None:intergenic
GCATTCACTTCGGAGCAAGG+CGG 0.745305 4_1:+55615506 Msa0557290:CDS
TATCTGGCAAGTGACCACAG+AGG 0.802522 4_1:-55615430 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCTCAATTTATTTATTTTTT+TGG + chr4_1:55614601-55614620 Msa0557290:intron 10.0%
!! TTATAATAACAAAATTAATC+CGG + chr4_1:55615149-55615168 Msa0557290:CDS 10.0%
!! TTCATTATAATCATCTAAAA+TGG - chr4_1:55611903-55611922 None:intergenic 15.0%
!!! TAAATATTTTGATAGAATGT+AGG - chr4_1:55612734-55612753 None:intergenic 15.0%
!! TTTATTAAAATGAGAATATC+AGG - chr4_1:55613545-55613564 None:intergenic 15.0%
!!! TTTTAATAAAATTTTGCAGA+CGG + chr4_1:55613555-55613574 Msa0557290:intron 15.0%
!! AAATAATTATGTTATTGAAC+TGG + chr4_1:55613757-55613776 Msa0557290:intron 15.0%
!! TCTACTAATTAATCTATAAA+AGG + chr4_1:55614264-55614283 Msa0557290:intron 15.0%
!!! AATTTTGTTATTATAATCCA+TGG - chr4_1:55615145-55615164 None:intergenic 15.0%
!!! TTGACTAATTCTTTTTATTT+GGG + chr4_1:55615748-55615767 Msa0557290:intron 15.0%
!! TTAAGTTAAATGTCTAAATT+CGG - chr4_1:55615962-55615981 None:intergenic 15.0%
!!! TTTCCTTTTGTTTCTTTTTT+GGG - chr4_1:55610773-55610792 None:intergenic 20.0%
!!! TTTTCCTTTTGTTTCTTTTT+TGG - chr4_1:55610774-55610793 None:intergenic 20.0%
!! AAAGAAACAAAAGGAAAATT+TGG + chr4_1:55610776-55610795 Msa0557290:five_prime_UTR 20.0%
!! ATAGTATCTGAAAAAGATAA+CGG - chr4_1:55611271-55611290 None:intergenic 20.0%
!!! ACTTTTTTTCTTCTGAAATT+TGG + chr4_1:55611448-55611467 Msa0557290:intron 20.0%
!!! CTTTTTGTTTTGTTTCATTT+TGG + chr4_1:55611779-55611798 Msa0557290:intron 20.0%
!! AAACTTTCAAAATTGAACAA+GGG - chr4_1:55612340-55612359 None:intergenic 20.0%
!! AAAACTTTCAAAATTGAACA+AGG - chr4_1:55612341-55612360 None:intergenic 20.0%
!!! ACTTGTTTCTCATTTTTATA+AGG + chr4_1:55612540-55612559 Msa0557290:intron 20.0%
!! AATATTTAGATAGAGTAACA+AGG + chr4_1:55612746-55612765 Msa0557290:intron 20.0%
!! GATTAAGATTCTCTTAAATA+AGG - chr4_1:55613248-55613267 None:intergenic 20.0%
!! ATCATTTATATGCTTGATAT+TGG + chr4_1:55613405-55613424 Msa0557290:intron 20.0%
!! TCATTTATATGCTTGATATT+GGG + chr4_1:55613406-55613425 Msa0557290:intron 20.0%
!!! AAACTTACCTTATTTACTAT+TGG - chr4_1:55613995-55614014 None:intergenic 20.0%
!!! ACTTAACATAGGAAAATTTT+TGG + chr4_1:55614111-55614130 Msa0557290:intron 20.0%
!! AAACAATATGAAGTGAAATA+TGG - chr4_1:55614152-55614171 None:intergenic 20.0%
!! TAAATAAATTGAGACATACT+GGG - chr4_1:55614595-55614614 None:intergenic 20.0%
!! ATAAATAAATTGAGACATAC+TGG - chr4_1:55614596-55614615 None:intergenic 20.0%
!!! GTTGACTAATTCTTTTTATT+TGG + chr4_1:55615747-55615766 Msa0557290:intron 20.0%
!!! TGACTAATTCTTTTTATTTG+GGG + chr4_1:55615749-55615768 Msa0557290:intron 20.0%
!! ATTCTTTCTTGTAATAACTT+AGG + chr4_1:55615903-55615922 Msa0557290:three_prime_UTR 20.0%
!!! GAATTTAGACATTTAACTTA+AGG + chr4_1:55615961-55615980 Msa0557290:three_prime_UTR 20.0%
! TAGTGGTTTCATAATAATGA+TGG - chr4_1:55610960-55610979 None:intergenic 25.0%
!! AATCGAATGTTGTCTTTTAT+TGG + chr4_1:55611379-55611398 Msa0557290:intron 25.0%
!!! TCTGAAATTTGGTTTCTTTT+TGG + chr4_1:55611459-55611478 Msa0557290:intron 25.0%
!!! CTGAAATTTGGTTTCTTTTT+GGG + chr4_1:55611460-55611479 Msa0557290:intron 25.0%
!!! ATTTTGGTTCAATTCTGTTT+TGG + chr4_1:55611795-55611814 Msa0557290:intron 25.0%
!!! AACTGATTTTTGAATGAACT+TGG + chr4_1:55612076-55612095 Msa0557290:intron 25.0%
! GACTTAAATTCAAAATGCAT+TGG - chr4_1:55612414-55612433 None:intergenic 25.0%
! TACAATACCAATTGATTGTT+GGG + chr4_1:55612579-55612598 Msa0557290:intron 25.0%
! AAGCATTAACTATGTCTTTA+AGG - chr4_1:55612911-55612930 None:intergenic 25.0%
!!! TACAATCCAAGGTATTTTTA+TGG + chr4_1:55612960-55612979 Msa0557290:intron 25.0%
!!! TTTTTTAGTAGTTCGTGAAA+GGG + chr4_1:55612998-55613017 Msa0557290:intron 25.0%
!!! TGCTTTTACTATTTCTTTGT+AGG + chr4_1:55613067-55613086 Msa0557290:intron 25.0%
!! TTACTATTTCTTTGTAGGAT+TGG + chr4_1:55613072-55613091 Msa0557290:intron 25.0%
! CCTAATAAACAAAGTTAGAA+AGG - chr4_1:55613382-55613401 None:intergenic 25.0%
!! CCTTTCTAACTTTGTTTATT+AGG + chr4_1:55613379-55613398 Msa0557290:intron 25.0%
!!! CATTTTTTTTGTCAATGTTG+TGG + chr4_1:55613480-55613499 Msa0557290:intron 25.0%
!!! AAGTGACACTTATTTTGAAA+CGG - chr4_1:55613853-55613872 None:intergenic 25.0%
!! AATTAATTAGAGGGTACAAT+TGG - chr4_1:55613944-55613963 None:intergenic 25.0%
! TGTACACTCAATTAATTAGA+GGG - chr4_1:55613953-55613972 None:intergenic 25.0%
!! TTACTATTGGTGTAATGTTT+TGG - chr4_1:55613982-55614001 None:intergenic 25.0%
! CATTACACCAATAGTAAATA+AGG + chr4_1:55613985-55614004 Msa0557290:intron 25.0%
! CAGATTGATAAATGTAATGA+TGG - chr4_1:55614043-55614062 None:intergenic 25.0%
! TATGAAGTGAAATATGGTAT+TGG - chr4_1:55614146-55614165 None:intergenic 25.0%
! AAACATCAGAATTCATTTGT+GGG - chr4_1:55614888-55614907 None:intergenic 25.0%
! TAATAACAAAATTAATCCGG+TGG + chr4_1:55615152-55615171 Msa0557290:CDS 25.0%
!!! TTTTTGATGTGTTCTAAACT+AGG + chr4_1:55615676-55615695 Msa0557290:intron 25.0%
!!! TTTTGATGTGTTCTAAACTA+GGG + chr4_1:55615677-55615696 Msa0557290:intron 25.0%
!!! ACTAGGGAATTTTTTTGAAA+TGG + chr4_1:55615693-55615712 Msa0557290:intron 25.0%
!!! GACTAATTCTTTTTATTTGG+GGG + chr4_1:55615750-55615769 Msa0557290:intron 25.0%
!!! ACTAATTCTTTTTATTTGGG+GGG + chr4_1:55615751-55615770 Msa0557290:intron 25.0%
!! ACATTTAACTTAAGGCAAAT+TGG + chr4_1:55615969-55615988 Msa0557290:three_prime_UTR 25.0%
AGTTCAGGTCTCATAAAAAA+TGG - chr4_1:55610665-55610684 None:intergenic 30.0%
!!! TTAGCAGCATTTTTAAGTTC+AGG - chr4_1:55610680-55610699 None:intergenic 30.0%
AGAGGGAAAAAGAAAGTAAA+AGG + chr4_1:55610741-55610760 Msa0557290:five_prime_UTR 30.0%
GAACCCAAAAAAGAAACAAA+AGG + chr4_1:55610767-55610786 Msa0557290:five_prime_UTR 30.0%
! AAAGAAGGTCTCTTTCTTTT+TGG + chr4_1:55610838-55610857 Msa0557290:five_prime_UTR 30.0%
!! TCTCTTTCTTTTTGGTGTAT+TGG + chr4_1:55610846-55610865 Msa0557290:five_prime_UTR 30.0%
!! CTCTTTCTTTTTGGTGTATT+GGG + chr4_1:55610847-55610866 Msa0557290:five_prime_UTR 30.0%
!! AGTGTTGTTTATTGTTGTAG+TGG - chr4_1:55610977-55610996 None:intergenic 30.0%
AAGATTCTCTTCACTATGAT+GGG + chr4_1:55611025-55611044 Msa0557290:exon 30.0%
TCATCTTCAAGTACAAGTAT+AGG + chr4_1:55611097-55611116 Msa0557290:CDS 30.0%
GATTTGTACACTGAAAAGAA+GGG - chr4_1:55611363-55611382 None:intergenic 30.0%
! GAATGTTGTCTTTTATTGGT+CGG + chr4_1:55611383-55611402 Msa0557290:intron 30.0%
! AATGTTGTCTTTTATTGGTC+GGG + chr4_1:55611384-55611403 Msa0557290:intron 30.0%
!!! TCTTTTTGGGTTTTTACATG+TGG + chr4_1:55611473-55611492 Msa0557290:intron 30.0%
!!! CTTTTTGGGTTTTTACATGT+GGG + chr4_1:55611474-55611493 Msa0557290:intron 30.0%
! GACAAATTTTGTGAATAACC+TGG + chr4_1:55611581-55611600 Msa0557290:intron 30.0%
AAACAAAAAGAGAATACTCC+AGG - chr4_1:55611602-55611621 None:intergenic 30.0%
!!! TTTTTGAGTGAAACTTGTGA+AGG + chr4_1:55611620-55611639 Msa0557290:intron 30.0%
ACTTAGTACTATGACTCATT+TGG - chr4_1:55611960-55611979 None:intergenic 30.0%
ACTAAGTAGTTAGTAGCTAT+AGG + chr4_1:55611973-55611992 Msa0557290:intron 30.0%
AAGTTTCGACATATATACAG+AGG + chr4_1:55612511-55612530 Msa0557290:CDS 30.0%
GTACAATACCAATTGATTGT+TGG + chr4_1:55612578-55612597 Msa0557290:intron 30.0%
ATACAAACCCAACAATCAAT+TGG - chr4_1:55612589-55612608 None:intergenic 30.0%
! GATTGTTGGGTTTGTATTTT+CGG + chr4_1:55612592-55612611 Msa0557290:intron 30.0%
TTTCGGTTTCTAATAAACAC+AGG + chr4_1:55612609-55612628 Msa0557290:intron 30.0%
TTCGGTTTCTAATAAACACA+GGG + chr4_1:55612610-55612629 Msa0557290:intron 30.0%
AACAAGAAGAAACTTGTATC+TGG + chr4_1:55612678-55612697 Msa0557290:CDS 30.0%
TGTCGTGAAATATAAAACGT+CGG - chr4_1:55612778-55612797 None:intergenic 30.0%
TATTTCACGACAATTGATAG+AGG + chr4_1:55612786-55612805 Msa0557290:intron 30.0%
ATTTCACGACAATTGATAGA+GGG + chr4_1:55612787-55612806 Msa0557290:intron 30.0%
! AGTAACTTTTCATCTATCTC+CGG + chr4_1:55612864-55612883 Msa0557290:CDS 30.0%
GAATAGCCATAAAAATACCT+TGG - chr4_1:55612969-55612988 None:intergenic 30.0%
!!! GTTTTTTAGTAGTTCGTGAA+AGG + chr4_1:55612997-55613016 Msa0557290:intron 30.0%
!! CTTTTTAAGAATTTGCGGAT+AGG - chr4_1:55613117-55613136 None:intergenic 30.0%
!! CAAGGCTTTTTAAGAATTTG+CGG - chr4_1:55613122-55613141 None:intergenic 30.0%
CAACTGAGTAAGAATAATCA+AGG - chr4_1:55613140-55613159 None:intergenic 30.0%
CTTGATTATTCTTACTCAGT+TGG + chr4_1:55613138-55613157 Msa0557290:CDS 30.0%
CTGTGAATCTGCATAATAAA+AGG - chr4_1:55613276-55613295 None:intergenic 30.0%
! CTTTTATTATGCAGATTCAC+AGG + chr4_1:55613274-55613293 Msa0557290:intron 30.0%
AGATTCACAGGATTGATTAT+TGG + chr4_1:55613286-55613305 Msa0557290:intron 30.0%
GATTATTGGAATTACTGATG+TGG + chr4_1:55613300-55613319 Msa0557290:CDS 30.0%
TTATTAAATAGCCTGCACTT+CGG + chr4_1:55613604-55613623 Msa0557290:intron 30.0%
CATCTAACTACACATATTAG+CGG + chr4_1:55613659-55613678 Msa0557290:intron 30.0%
!! TGTATTCCTTTAGAATGAGA+AGG + chr4_1:55613720-55613739 Msa0557290:intron 30.0%
AATAGTCCTTCTCATTCTAA+AGG - chr4_1:55613729-55613748 None:intergenic 30.0%
!! ATGTTATTGAACTGGCTTTA+TGG + chr4_1:55613765-55613784 Msa0557290:intron 30.0%
GTGTACACTCAATTAATTAG+AGG - chr4_1:55613954-55613973 None:intergenic 30.0%
!! TTCAAAATGAGTGTCGTTTA+AGG - chr4_1:55614076-55614095 None:intergenic 30.0%
!!! ACACTCATTTTGAAACAGAA+GGG + chr4_1:55614082-55614101 Msa0557290:intron 30.0%
!! AAGGGAGTATTACTTAACAT+AGG + chr4_1:55614100-55614119 Msa0557290:intron 30.0%
! CTTGAAGTAACTCAAGTTTT+TGG + chr4_1:55614199-55614218 Msa0557290:intron 30.0%
CAAGTAGTAATGAGGTTAAT+AGG - chr4_1:55614351-55614370 None:intergenic 30.0%
ATCACAAACAAGTAGTAATG+AGG - chr4_1:55614359-55614378 None:intergenic 30.0%
ATTGACTGATTGCAATCAAA+TGG + chr4_1:55614395-55614414 Msa0557290:intron 30.0%
! ATTTCTCATCATTTCAGGTA+AGG + chr4_1:55614419-55614438 Msa0557290:intron 30.0%
! TTGCAAGGTCAAGAAATTTT+AGG + chr4_1:55614742-55614761 Msa0557290:CDS 30.0%
GAAACATCAGAATTCATTTG+TGG - chr4_1:55614889-55614908 None:intergenic 30.0%
!! TATGCTTCTGAAATGAAAGA+TGG + chr4_1:55615204-55615223 Msa0557290:CDS 30.0%
!!! TTTGGTTTTTCATTAACCGA+GGG + chr4_1:55615378-55615397 Msa0557290:CDS 30.0%
! TCTGCATCTTTATTTGCAAT+GGG - chr4_1:55615408-55615427 None:intergenic 30.0%
! TTCTGCATCTTTATTTGCAA+TGG - chr4_1:55615409-55615428 None:intergenic 30.0%
TTGAAGATGATTTCAATCCA+AGG + chr4_1:55615484-55615503 Msa0557290:CDS 30.0%
AGGATGAATATTGCTTACTT+TGG - chr4_1:55615547-55615566 None:intergenic 30.0%
! CTAGCGTACTTTTCTTTAAA+TGG + chr4_1:55615596-55615615 Msa0557290:intron 30.0%
TGTAACTTAATATTGTCTGC+AGG + chr4_1:55615781-55615800 Msa0557290:intron 30.0%
GTAACTTAATATTGTCTGCA+GGG + chr4_1:55615782-55615801 Msa0557290:intron 30.0%
AATCTTGTATGCACTGTTTA+TGG + chr4_1:55616019-55616038 Msa0557290:three_prime_UTR 30.0%
AAAATGCTGCTAATGAAAGC+TGG + chr4_1:55610687-55610706 Msa0557290:intron 35.0%
CAAGATTCTCTTCACTATGA+TGG + chr4_1:55611024-55611043 Msa0557290:exon 35.0%
AGTACAAGTATAGGTAGTGT+TGG + chr4_1:55611106-55611125 Msa0557290:CDS 35.0%
!! TTCTGGTTCTTCTGTTTGTT+TGG + chr4_1:55611144-55611163 Msa0557290:CDS 35.0%
TTCTTTGGCAAAGAGATCAT+AGG - chr4_1:55611193-55611212 None:intergenic 35.0%
ATGATCTCTTTGCCAAAGAA+AGG + chr4_1:55611193-55611212 Msa0557290:CDS 35.0%
ACAACTACACTTCCTTTCTT+TGG - chr4_1:55611208-55611227 None:intergenic 35.0%
CGATTTGTACACTGAAAAGA+AGG - chr4_1:55611364-55611383 None:intergenic 35.0%
TGCTTAGTGAGGAAATTGAT+TGG + chr4_1:55611504-55611523 Msa0557290:intron 35.0%
ATCTGTGTAAGTGTCAAGTT+TGG + chr4_1:55611533-55611552 Msa0557290:intron 35.0%
TTGTGAAGGTTGCTATAGTT+TGG + chr4_1:55611634-55611653 Msa0557290:intron 35.0%
!!! AGTTTGGTTTTGTTGTTGCT+TGG + chr4_1:55611650-55611669 Msa0557290:intron 35.0%
TTTGGAGAATGTGCTGAAAA+TGG + chr4_1:55611813-55611832 Msa0557290:intron 35.0%
TTACTCAGTGTCTAAGTCTT+AGG + chr4_1:55611865-55611884 Msa0557290:intron 35.0%
TACTCAGTGTCTAAGTCTTA+GGG + chr4_1:55611866-55611885 Msa0557290:intron 35.0%
GTAGCACTCTAGTGTTTAAA+AGG - chr4_1:55612029-55612048 None:intergenic 35.0%
!! GTTGCACTTGCTATAAAAAG+TGG - chr4_1:55612102-55612121 None:intergenic 35.0%
ATTTCAAAGTAGCACACTCA+AGG - chr4_1:55612311-55612330 None:intergenic 35.0%
TTTAAGTCCTCTTCCTCTTT+AGG + chr4_1:55612426-55612445 Msa0557290:intron 35.0%
TGTTGAGAGTAATCCTAAAG+AGG - chr4_1:55612442-55612461 None:intergenic 35.0%
TAGAATGTAGGTCATCTTAC+CGG - chr4_1:55612722-55612741 None:intergenic 35.0%
TTTCACGACAATTGATAGAG+GGG + chr4_1:55612788-55612807 Msa0557290:intron 35.0%
ATTCTTACTCAGTTGGAATG+AGG + chr4_1:55613145-55613164 Msa0557290:CDS 35.0%
ATCAAAATGGAAATGCCTAG+TGG + chr4_1:55613342-55613361 Msa0557290:CDS 35.0%
TATGCTTGATATTGGGTGTT+AGG + chr4_1:55613413-55613432 Msa0557290:intron 35.0%
! AAATTTTGCAGACGGTTTGT+TGG + chr4_1:55613563-55613582 Msa0557290:intron 35.0%
CGCTAATATGTGTAGTTAGA+TGG - chr4_1:55613661-55613680 None:intergenic 35.0%
!!! GACACTTATTTTGAAACGGT+GGG - chr4_1:55613849-55613868 None:intergenic 35.0%
!!! TGACACTTATTTTGAAACGG+TGG - chr4_1:55613850-55613869 None:intergenic 35.0%
!!! GACACTCATTTTGAAACAGA+AGG + chr4_1:55614081-55614100 Msa0557290:intron 35.0%
CGTAAAGTATAGACAATGTC+AGG - chr4_1:55614177-55614196 None:intergenic 35.0%
!! TTGATTGCATTTGCTGTTCA+TGG + chr4_1:55614310-55614329 Msa0557290:intron 35.0%
ATGGCATTTCTCATCATTTC+AGG + chr4_1:55614414-55614433 Msa0557290:intron 35.0%
TTCATCAAAGCTAGAGTTTC+CGG + chr4_1:55614567-55614586 Msa0557290:CDS 35.0%
AATTTCTCCATTCCTCTAAC+AGG + chr4_1:55614670-55614689 Msa0557290:intron 35.0%
AATTCTACCTGTTAGAGGAA+TGG - chr4_1:55614680-55614699 None:intergenic 35.0%
ATTCCTCTAACAGGTAGAAT+TGG + chr4_1:55614679-55614698 Msa0557290:intron 35.0%
TTCCTCTAACAGGTAGAATT+GGG + chr4_1:55614680-55614699 Msa0557290:intron 35.0%
TCTGTAATTCAGATAACTGG+TGG - chr4_1:55614807-55614826 None:intergenic 35.0%
ACCAGTTATCTGAATTACAG+AGG + chr4_1:55614806-55614825 Msa0557290:CDS 35.0%
ACCTCTGTAATTCAGATAAC+TGG - chr4_1:55614810-55614829 None:intergenic 35.0%
AATTCTGATGTTTCCTGCAA+TGG + chr4_1:55614895-55614914 Msa0557290:CDS 35.0%
TAACAAAATTAATCCGGTGG+AGG + chr4_1:55615155-55615174 Msa0557290:CDS 35.0%
!!! GTTTGGTTTTTCATTAACCG+AGG + chr4_1:55615377-55615396 Msa0557290:CDS 35.0%
ATCTTCAACATGTCTTGTGA+AGG - chr4_1:55615472-55615491 None:intergenic 35.0%
ACTGGAATTGTTGATATACG+AGG + chr4_1:55615636-55615655 Msa0557290:intron 35.0%
AATGGCTGTGATATGTGTAA+TGG + chr4_1:55615711-55615730 Msa0557290:intron 35.0%
! CTTTTTCCCTCTCACTGAAT+GGG - chr4_1:55610733-55610752 None:intergenic 40.0%
! TCTTTTTCCCTCTCACTGAA+TGG - chr4_1:55610734-55610753 None:intergenic 40.0%
TGGGAAGAGAAAGAGAAAGA+AGG + chr4_1:55610823-55610842 Msa0557290:five_prime_UTR 40.0%
!! TCTTTTTGGTGTATTGGGTC+AGG + chr4_1:55610852-55610871 Msa0557290:five_prime_UTR 40.0%
GATTGATCTCAACACTACTG+AGG + chr4_1:55611051-55611070 Msa0557290:CDS 40.0%
GAAGATGAAACACCTTCTTC+TGG + chr4_1:55611073-55611092 Msa0557290:CDS 40.0%
CTTGAAGATGAACCAGAAGA+AGG - chr4_1:55611088-55611107 None:intergenic 40.0%
! CTTCTGTTTGTTTGGAGCTA+TGG + chr4_1:55611152-55611171 Msa0557290:CDS 40.0%
GTAGTTGTTTACTTCCCTCA+AGG + chr4_1:55611220-55611239 Msa0557290:CDS 40.0%
!!! TGGGTTTTGTTTGCTTAGTG+AGG + chr4_1:55611493-55611512 Msa0557290:intron 40.0%
GTAAGTGTCAAGTTTGGCAT+AGG + chr4_1:55611539-55611558 Msa0557290:intron 40.0%
CATAGAATGTGTGTTTGTGC+AGG + chr4_1:55611683-55611702 Msa0557290:intron 40.0%
ACTCAGTGTCTAAGTCTTAG+GGG + chr4_1:55611867-55611886 Msa0557290:intron 40.0%
AGCAAGTGCAACAAAAGTTG+AGG + chr4_1:55612110-55612129 Msa0557290:intron 40.0%
GCAAGTGCAACAAAAGTTGA+GGG + chr4_1:55612111-55612130 Msa0557290:intron 40.0%
TGCAACAAAAGTTGAGGGAA+GGG + chr4_1:55612116-55612135 Msa0557290:CDS 40.0%
!! GTAATTGATGGTGATGGTGA+TGG + chr4_1:55612139-55612158 Msa0557290:CDS 40.0%
GAGTAATCCTAAAGAGGAAG+AGG - chr4_1:55612436-55612455 None:intergenic 40.0%
TATGTCGAAACTTCCATTCC+TGG - chr4_1:55612504-55612523 None:intergenic 40.0%
ACAATTGATAGAGGGGAAGA+TGG + chr4_1:55612795-55612814 Msa0557290:intron 40.0%
GAAGATGGCGAATTGAGATT+GGG + chr4_1:55612810-55612829 Msa0557290:CDS 40.0%
!! TTTTTAATTGAGCTGCCCTG+CGG - chr4_1:55612839-55612858 None:intergenic 40.0%
TGGATTGTAGCGTATGCTAA+AGG - chr4_1:55612949-55612968 None:intergenic 40.0%
TTAGCATACGCTACAATCCA+AGG + chr4_1:55612949-55612968 Msa0557290:CDS 40.0%
TTAGATGGCCTGGATCAAAA+TGG + chr4_1:55613329-55613348 Msa0557290:CDS 40.0%
!! AGGCATTTCCATTTTGATCC+AGG - chr4_1:55613340-55613359 None:intergenic 40.0%
!! ATGCCTAGTGGTATTTTTGC+AGG + chr4_1:55613354-55613373 Msa0557290:intron 40.0%
!! TGCCTAGTGGTATTTTTGCA+GGG + chr4_1:55613355-55613374 Msa0557290:intron 40.0%
TGTAGTTAGATGGAAGACAG+AGG - chr4_1:55613651-55613670 None:intergenic 40.0%
! AGTAGCTTAAGAAGTACGCT+CGG + chr4_1:55614231-55614250 Msa0557290:intron 40.0%
TCTTCAAACATGCACACGAA+TGG - chr4_1:55614290-55614309 None:intergenic 40.0%
! TCTCATCATTTCAGGTAAGG+TGG + chr4_1:55614422-55614441 Msa0557290:intron 40.0%
! CTCATCATTTCAGGTAAGGT+GGG + chr4_1:55614423-55614442 Msa0557290:intron 40.0%
ACTAGTTGCCATCAAGCTAT+TGG - chr4_1:55614521-55614540 None:intergenic 40.0%
! TGATGGCAACTAGTTTGAAG+AGG + chr4_1:55614527-55614546 Msa0557290:CDS 40.0%
!! GGAAACTCTAGCTTTGATGA+AGG - chr4_1:55614568-55614587 None:intergenic 40.0%
AATTGAGACATACTGGGAAC+CGG - chr4_1:55614589-55614608 None:intergenic 40.0%
CAATGACGTTTCATTGCATG+AGG - chr4_1:55614647-55614666 None:intergenic 40.0%
AGAATTGGGACATCAGACTT+TGG + chr4_1:55614694-55614713 Msa0557290:CDS 40.0%
GAATTGGGACATCAGACTTT+GGG + chr4_1:55614695-55614714 Msa0557290:CDS 40.0%
AATTGGGACATCAGACTTTG+GGG + chr4_1:55614696-55614715 Msa0557290:CDS 40.0%
TGAATCTTTCCGATTCCAGA+AGG + chr4_1:55614924-55614943 Msa0557290:CDS 40.0%
ATACTTCCTAGCCAACCATA+TGG + chr4_1:55614964-55614983 Msa0557290:CDS 40.0%
AAAAGGCTTGTCCATATGGT+TGG - chr4_1:55614978-55614997 None:intergenic 40.0%
ACAGAAAAGGCTTGTCCATA+TGG - chr4_1:55614982-55615001 None:intergenic 40.0%
CATAGAACGAACCTCTTTGA+AGG - chr4_1:55615188-55615207 None:intergenic 40.0%
CGGAAAATAGGCCTATTAGT+TGG - chr4_1:55615246-55615265 None:intergenic 40.0%
! ACTAATAGGCCTATTTTCCG+CGG + chr4_1:55615246-55615265 Msa0557290:CDS 40.0%
CATGAAGACATGAACTCGTT+TGG + chr4_1:55615276-55615295 Msa0557290:CDS 40.0%
!!! TCTGCAGCTACTTTTACATG+TGG - chr4_1:55615355-55615374 None:intergenic 40.0%
! AAAAGTAGCTGCAGAGTGTT+TGG + chr4_1:55615360-55615379 Msa0557290:CDS 40.0%
TCAACATGTCTTGTGAAGGA+GGG - chr4_1:55615468-55615487 None:intergenic 40.0%
TTCAACATGTCTTGTGAAGG+AGG - chr4_1:55615469-55615488 None:intergenic 40.0%
! TCAATCCAAGGCATTCACTT+CGG + chr4_1:55615496-55615515 Msa0557290:CDS 40.0%
TCGATAATCATGTCTCTCAC+AGG - chr4_1:55615567-55615586 None:intergenic 40.0%
! GAATCTGCAAGTTTTCGAAC+TGG + chr4_1:55615618-55615637 Msa0557290:intron 40.0%
GATATCGAGGTGCATCATAT+AGG - chr4_1:55616046-55616065 None:intergenic 40.0%
!! CTCTCACTGAATGGGCTTTT+GGG - chr4_1:55610725-55610744 None:intergenic 45.0%
CAAAAGCCCATTCAGTGAGA+GGG + chr4_1:55610724-55610743 Msa0557290:intron 45.0%
AGTGAAAGCAGTGAGTGAGT+GGG + chr4_1:55610804-55610823 Msa0557290:five_prime_UTR 45.0%
AGCGTGAAGAACTTTGGCAT+TGG - chr4_1:55610886-55610905 None:intergenic 45.0%
!! ATAGGTAGTGTTGGTGCTGT+TGG + chr4_1:55611115-55611134 Msa0557290:CDS 45.0%
TTACTTCCCTCAAGGACACT+TGG + chr4_1:55611228-55611247 Msa0557290:CDS 45.0%
GATGTTCCAAGTGTCCTTGA+GGG - chr4_1:55611237-55611256 None:intergenic 45.0%
AGATGTTCCAAGTGTCCTTG+AGG - chr4_1:55611238-55611257 None:intergenic 45.0%
ACACGACAGAACACATGAGA+AGG - chr4_1:55611295-55611314 None:intergenic 45.0%
GAACGATGAGGTGTATTGTC+AGG + chr4_1:55611716-55611735 Msa0557290:CDS 45.0%
! GGTGTATTGTCAGGTGTTGT+TGG + chr4_1:55611725-55611744 Msa0557290:CDS 45.0%
!! GTTGTTGGTTCCTGAAAGTG+AGG + chr4_1:55611740-55611759 Msa0557290:CDS 45.0%
ATAAGCCTCACCTCACTTTC+AGG - chr4_1:55611753-55611772 None:intergenic 45.0%
GTGCAACAAAAGTTGAGGGA+AGG + chr4_1:55612115-55612134 Msa0557290:CDS 45.0%
GCAACAAAAGTTGAGGGAAG+GGG + chr4_1:55612117-55612136 Msa0557290:CDS 45.0%
TTGAGGGAAGGGGTAATTGA+TGG + chr4_1:55612127-55612146 Msa0557290:CDS 45.0%
!! GAAGGGGTAATTGATGGTGA+TGG + chr4_1:55612133-55612152 Msa0557290:CDS 45.0%
AGAGTCTTGCAGAACATGTG+AGG - chr4_1:55612205-55612224 None:intergenic 45.0%
GCTTCTGATACTAGCACTCA+TGG + chr4_1:55612229-55612248 Msa0557290:CDS 45.0%
TCTGATACTAGCACTCATGG+TGG + chr4_1:55612232-55612251 Msa0557290:CDS 45.0%
ACACTCAAGGTAAGTACCAG+GGG - chr4_1:55612298-55612317 None:intergenic 45.0%
CACACTCAAGGTAAGTACCA+GGG - chr4_1:55612299-55612318 None:intergenic 45.0%
AAGACCTTCTCAAGAGCTTG+TGG + chr4_1:55612462-55612481 Msa0557290:CDS 45.0%
TTTGCCACAAGCTCTTGAGA+AGG - chr4_1:55612469-55612488 None:intergenic 45.0%
TTCTCAAGAGCTTGTGGCAA+AGG + chr4_1:55612468-55612487 Msa0557290:CDS 45.0%
AATGTAGGTCATCTTACCGG+AGG - chr4_1:55612719-55612738 None:intergenic 45.0%
GGAAGATGGCGAATTGAGAT+TGG + chr4_1:55612809-55612828 Msa0557290:CDS 45.0%
AATTGAGATTGGGAATCCGC+AGG + chr4_1:55612820-55612839 Msa0557290:CDS 45.0%
ATTGAGATTGGGAATCCGCA+GGG + chr4_1:55612821-55612840 Msa0557290:CDS 45.0%
ACCAAGATTCAATTGCTGGC+CGG - chr4_1:55612886-55612905 None:intergenic 45.0%
GGCTACCAAGATTCAATTGC+TGG - chr4_1:55612890-55612909 None:intergenic 45.0%
ACTCAGTTGGAATGAGGTTC+AGG + chr4_1:55613151-55613170 Msa0557290:CDS 45.0%
CTGATGTGGATCCTGTTAGA+TGG + chr4_1:55613314-55613333 Msa0557290:CDS 45.0%
TTTGATCCAGGCCATCTAAC+AGG - chr4_1:55613328-55613347 None:intergenic 45.0%
GTCCCTGCAAAAATACCACT+AGG - chr4_1:55613360-55613379 None:intergenic 45.0%
CGGCACACTTTCAAAACTGT+AGG + chr4_1:55613679-55613698 Msa0557290:intron 45.0%
TTCCACCACCAATAGCTTGA+TGG + chr4_1:55614510-55614529 Msa0557290:CDS 45.0%
AGTTGCCATCAAGCTATTGG+TGG - chr4_1:55614518-55614537 None:intergenic 45.0%
AGTTTGAAGAGGACCAAGAC+TGG + chr4_1:55614538-55614557 Msa0557290:CDS 45.0%
TGATGAAGGCAATCCAGTCT+TGG - chr4_1:55614554-55614573 None:intergenic 45.0%
GTCCCAATTCTACCTGTTAG+AGG - chr4_1:55614685-55614704 None:intergenic 45.0%
!! GAATTACAGAGGTGCTATCC+CGG + chr4_1:55614817-55614836 Msa0557290:CDS 45.0%
GATGTTTCCTGCAATGGCTT+TGG + chr4_1:55614901-55614920 Msa0557290:CDS 45.0%
AGATTCACCAAAGCCATTGC+AGG - chr4_1:55614911-55614930 None:intergenic 45.0%
!! CTTGCAAGACCTTCTGGAAT+CGG - chr4_1:55614936-55614955 None:intergenic 45.0%
! ACAAGCCTTTTCTGTCAACG+AGG + chr4_1:55614987-55615006 Msa0557290:CDS 45.0%
ACAAGCCTCGTTGACAGAAA+AGG - chr4_1:55614995-55615014 None:intergenic 45.0%
GTCAACGAGGCTTGTAGAAA+TGG + chr4_1:55615000-55615019 Msa0557290:CDS 45.0%
GCTTGTAGAAATGGTCGCTT+TGG + chr4_1:55615009-55615028 Msa0557290:CDS 45.0%
!! GGTCGCTTTGGACTTTTTGA+TGG + chr4_1:55615021-55615040 Msa0557290:CDS 45.0%
!! ACTTTTTGATGGTCACCACC+AGG + chr4_1:55615032-55615051 Msa0557290:CDS 45.0%
TGCCAAGATCCACAAATGGA+TGG + chr4_1:55615055-55615074 Msa0557290:CDS 45.0%
GACCATCCATTTGTGGATCT+TGG - chr4_1:55615060-55615079 None:intergenic 45.0%
CTGAGAAGACCATCCATTTG+TGG - chr4_1:55615067-55615086 None:intergenic 45.0%
TGCTGGTACATCAACACTGA+TGG - chr4_1:55615114-55615133 None:intergenic 45.0%
GAGGATAACGTCCTTCAAAG+AGG + chr4_1:55615174-55615193 Msa0557290:CDS 45.0%
! CTAATAGGCCTATTTTCCGC+GGG + chr4_1:55615247-55615266 Msa0557290:CDS 45.0%
TGGTACACATTCACGCGATT+TGG + chr4_1:55615296-55615315 Msa0557290:CDS 45.0%
TTGGTTGCACTACAGAGAAG+CGG + chr4_1:55615315-55615334 Msa0557290:CDS 45.0%
TAAAGATGCAGAACCCTCTG+TGG + chr4_1:55615416-55615435 Msa0557290:CDS 45.0%
GTCACTTGCCAGATAAATCC+TGG + chr4_1:55615438-55615457 Msa0557290:CDS 45.0%
!! CACTGAATGGGCTTTTGGGT+AGG - chr4_1:55610721-55610740 None:intergenic 50.0%
!! CCTCTCACTGAATGGGCTTT+TGG - chr4_1:55610726-55610745 None:intergenic 50.0%
CCAAAAGCCCATTCAGTGAG+AGG + chr4_1:55610723-55610742 Msa0557290:intron 50.0%
GAGTGAAAGCAGTGAGTGAG+TGG + chr4_1:55610803-55610822 Msa0557290:five_prime_UTR 50.0%
! GCAGAGAGCGTGAAGAACTT+TGG - chr4_1:55610892-55610911 None:intergenic 50.0%
!! AGTGTTGGTGCTGTTGGTTC+TGG + chr4_1:55611121-55611140 Msa0557290:CDS 50.0%
ATGTGTGTTTGTGCAGGCTG+AGG + chr4_1:55611689-55611708 Msa0557290:intron 50.0%
TGTTTGTGCAGGCTGAGGAA+GGG + chr4_1:55611694-55611713 Msa0557290:intron 50.0%
TGGTTCCTGAAAGTGAGGTG+AGG + chr4_1:55611745-55611764 Msa0557290:intron 50.0%
!! GATGGTGATGGTGATGGTGA+AGG + chr4_1:55612145-55612164 Msa0557290:CDS 50.0%
CAGGGGAGGAAAGCAATCTT+CGG - chr4_1:55612281-55612300 None:intergenic 50.0%
GCACACTCAAGGTAAGTACC+AGG - chr4_1:55612300-55612319 None:intergenic 50.0%
CTTGTGGCAAAGGATCTGCA+TGG + chr4_1:55612478-55612497 Msa0557290:CDS 50.0%
GTCGTAAGCAAATGCCTTCG+TGG - chr4_1:55612639-55612658 None:intergenic 50.0%
!! CGAAGGCATTTGCTTACGAC+TGG + chr4_1:55612639-55612658 Msa0557290:CDS 50.0%
GGCATTTGCTTACGACTGGA+TGG + chr4_1:55612643-55612662 Msa0557290:CDS 50.0%
GAGATGCAGTTCTGTTCCTC+CGG + chr4_1:55612700-55612719 Msa0557290:CDS 50.0%
TCCGGCCAGCAATTGAATCT+TGG + chr4_1:55612882-55612901 Msa0557290:CDS 50.0%
CGCAGTCAAGGAAACTCATG+TGG + chr4_1:55613437-55613456 Msa0557290:intron 50.0%
CTCGTGTCTTCCTGGCATAT+GGG + chr4_1:55613512-55613531 Msa0557290:intron 50.0%
TCGTGTCTTCCTGGCATATG+GGG + chr4_1:55613513-55613532 Msa0557290:intron 50.0%
!! TAACACAAGCACCGAAGTGC+AGG - chr4_1:55613618-55613637 None:intergenic 50.0%
TCAGGTAAGGTGGGATGACA+TGG + chr4_1:55614432-55614451 Msa0557290:intron 50.0%
GGGATGACATGGAAGCTTCA+AGG + chr4_1:55614443-55614462 Msa0557290:CDS 50.0%
TGGAAGCTTCAAGGCTCAAC+AGG + chr4_1:55614452-55614471 Msa0557290:CDS 50.0%
GGAAGCTTCAAGGCTCAACA+GGG + chr4_1:55614453-55614472 Msa0557290:CDS 50.0%
GCTCAACAGGGTTTCACCAT+GGG + chr4_1:55614465-55614484 Msa0557290:CDS 50.0%
TGCCATCAAGCTATTGGTGG+TGG - chr4_1:55614515-55614534 None:intergenic 50.0%
! CAGACTTTGGGGAATCACTG+CGG + chr4_1:55614707-55614726 Msa0557290:CDS 50.0%
CTTGACCTTGCAAGACCTTC+TGG - chr4_1:55614735-55614754 None:intergenic 50.0%
TATCCCGGTTCAACCTATCC+CGG + chr4_1:55614832-55614851 Msa0557290:CDS 50.0%
TTTCCTGTTGAAGCGATCCC+GGG - chr4_1:55614853-55614872 None:intergenic 50.0%
GTTTCCTGTTGAAGCGATCC+CGG - chr4_1:55614854-55614873 None:intergenic 50.0%
CGATTCCAGAAGGTCTTGCA+AGG + chr4_1:55614934-55614953 Msa0557290:CDS 50.0%
CTTGACCTTGCAAGACCTTC+TGG - chr4_1:55614735-55614754 None:intergenic 50.0%
! GCTTGTCCATATGGTTGGCT+AGG - chr4_1:55614973-55614992 None:intergenic 50.0%
CATTTGTGGATCTTGGCACC+TGG - chr4_1:55615053-55615072 None:intergenic 50.0%
CAGGTGCCAAGATCCACAAA+TGG + chr4_1:55615051-55615070 Msa0557290:CDS 50.0%
AATCCATGGTTGACGCTTGC+TGG - chr4_1:55615131-55615150 None:intergenic 50.0%
TGAAGGACGTTATCCTCCAC+CGG - chr4_1:55615171-55615190 None:intergenic 50.0%
CTGCCTCAACGCCAACTAAT+AGG + chr4_1:55615232-55615251 Msa0557290:CDS 50.0%
AGGCCTATTAGTTGGCGTTG+AGG - chr4_1:55615238-55615257 None:intergenic 50.0%
ACAGAGAAGCGGTCAAGAGT+TGG + chr4_1:55615326-55615345 Msa0557290:CDS 50.0%
!! ATTTGCAATGGGAGCACCCT+CGG - chr4_1:55615397-55615416 None:intergenic 50.0%
ATCTGGCAAGTGACCACAGA+GGG - chr4_1:55615432-55615451 None:intergenic 50.0%
TATCTGGCAAGTGACCACAG+AGG - chr4_1:55615433-55615452 None:intergenic 50.0%
AGGGAGGTCCAGGATTTATC+TGG - chr4_1:55615449-55615468 None:intergenic 50.0%
ACATGTCTTGTGAAGGAGGG+AGG - chr4_1:55615465-55615484 None:intergenic 50.0%
TTGCTCCGAAGTGAATGCCT+TGG - chr4_1:55615504-55615523 None:intergenic 50.0%
! AAGGCATTCACTTCGGAGCA+AGG + chr4_1:55615503-55615522 Msa0557290:CDS 50.0%
ATGCATGCCAAGACTGATGC+TGG + chr4_1:55615834-55615853 Msa0557290:three_prime_UTR 50.0%
!! GGTGCTGTTGGTTCTGGTTC+TGG + chr4_1:55611127-55611146 Msa0557290:CDS 55.0%
GAGCTATGGCATGCTTGTGC+TGG + chr4_1:55611166-55611185 Msa0557290:CDS 55.0%
GTGTTTGTGCAGGCTGAGGA+AGG + chr4_1:55611693-55611712 Msa0557290:intron 55.0%
!! TGATGGTGATGGTGAAGGCG+AGG + chr4_1:55612150-55612169 Msa0557290:CDS 55.0%
CGAAGATTGCTTTCCTCCCC+TGG + chr4_1:55612279-55612298 Msa0557290:CDS 55.0%
CTCAAGGTAAGTACCAGGGG+AGG - chr4_1:55612295-55612314 None:intergenic 55.0%
AGGATCTGCATGGCCAGGAA+TGG + chr4_1:55612488-55612507 Msa0557290:CDS 55.0%
TAAACACAGGGCAGCCACGA+AGG + chr4_1:55612622-55612641 Msa0557290:intron 55.0%
CTGAAGATGCTGCAGAGCGA+AGG + chr4_1:55613187-55613206 Msa0557290:CDS 55.0%
GTGGATCCTGTTAGATGGCC+TGG + chr4_1:55613319-55613338 Msa0557290:CDS 55.0%
TGGGTGTTAGGACGCAGTCA+AGG + chr4_1:55613425-55613444 Msa0557290:intron 55.0%
TCCTCATCCTCGTGTCTTCC+TGG + chr4_1:55613504-55613523 Msa0557290:intron 55.0%
CCATATGCCAGGAAGACACG+AGG - chr4_1:55613514-55613533 None:intergenic 55.0%
CCTCGTGTCTTCCTGGCATA+TGG + chr4_1:55613511-55613530 Msa0557290:intron 55.0%
AGGCTTCAACCCCATATGCC+AGG - chr4_1:55613525-55613544 None:intergenic 55.0%
GGCTCAACAGGGTTTCACCA+TGG + chr4_1:55614464-55614483 Msa0557290:CDS 55.0%
! GTGGTGGAAGATGAGCCTGA+GGG - chr4_1:55614499-55614518 None:intergenic 55.0%
GGAATCACTGCGGTTCCAGA+AGG + chr4_1:55614717-55614736 Msa0557290:CDS 55.0%
CGGTTCCAGAAGGTCTTGCA+AGG + chr4_1:55614727-55614746 Msa0557290:CDS 55.0%
ATCCCGGTTCAACCTATCCC+GGG + chr4_1:55614833-55614852 Msa0557290:CDS 55.0%
! ATCCCGGGATAGGTTGAACC+GGG - chr4_1:55614838-55614857 None:intergenic 55.0%
! GATCCCGGGATAGGTTGAAC+CGG - chr4_1:55614839-55614858 None:intergenic 55.0%
TGTTGAAGCGATCCCGGGAT+AGG - chr4_1:55614848-55614867 None:intergenic 55.0%
TATCCCGGGATCGCTTCAAC+AGG + chr4_1:55614847-55614866 Msa0557290:CDS 55.0%
TTGTGGATCTTGGCACCTGG+TGG - chr4_1:55615050-55615069 None:intergenic 55.0%
GTACCAGCAAGCGTCAACCA+TGG + chr4_1:55615125-55615144 Msa0557290:CDS 55.0%
TGAGCTAGCCCGCGGAAAAT+AGG - chr4_1:55615258-55615277 None:intergenic 55.0%
TGTCTTCATGAGCTAGCCCG+CGG - chr4_1:55615266-55615285 None:intergenic 55.0%
GCATTCACTTCGGAGCAAGG+CGG + chr4_1:55615506-55615525 Msa0557290:CDS 55.0%
CCTCAAGCCAGCATCAGTCT+TGG - chr4_1:55615844-55615863 None:intergenic 55.0%
!! CCAAGACTGATGCTGGCTTG+AGG + chr4_1:55615841-55615860 Msa0557290:three_prime_UTR 55.0%
GGCTGAGGAAGGGAACGATG+AGG + chr4_1:55611704-55611723 Msa0557290:intron 60.0%
CAATCTTCGGCTGCTCGACG+AGG - chr4_1:55612268-55612287 None:intergenic 60.0%
GGCAAAGGATCTGCATGGCC+AGG + chr4_1:55612483-55612502 Msa0557290:CDS 60.0%
GCCAGGAAGACACGAGGATG+AGG - chr4_1:55613508-55613527 None:intergenic 60.0%
CCTGAGGGCTCAATCTCCCA+TGG - chr4_1:55614484-55614503 None:intergenic 60.0%
CCATGGGAGATTGAGCCCTC+AGG + chr4_1:55614481-55614500 Msa0557290:CDS 60.0%
!! GGTGGTGGAAGATGAGCCTG+AGG - chr4_1:55614500-55614519 None:intergenic 60.0%
CTTGTGAAGGAGGGAGGTCC+AGG - chr4_1:55615459-55615478 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 55610617 55616066 55610617 ID=Msa0557290;Name=Msa0557290
chr4_1 mRNA 55610617 55616066 55610617 ID=Msa0557290-mRNA-1;Parent=Msa0557290;Name=Msa0557290-mRNA-1;_AED=0.09;_eAED=0.09;_QI=376|1|0.91|1|0.81|0.66|12|246|703
chr4_1 exon 55610617 55610682 55610617 ID=Msa0557290-mRNA-1:exon:16632;Parent=Msa0557290-mRNA-1
chr4_1 exon 55610730 55611333 55610730 ID=Msa0557290-mRNA-1:exon:16633;Parent=Msa0557290-mRNA-1
chr4_1 exon 55611705 55611761 55611705 ID=Msa0557290-mRNA-1:exon:16634;Parent=Msa0557290-mRNA-1
chr4_1 exon 55612112 55612300 55612112 ID=Msa0557290-mRNA-1:exon:16635;Parent=Msa0557290-mRNA-1
chr4_1 exon 55612448 55612532 55612448 ID=Msa0557290-mRNA-1:exon:16636;Parent=Msa0557290-mRNA-1
chr4_1 exon 55612631 55612721 55612631 ID=Msa0557290-mRNA-1:exon:16637;Parent=Msa0557290-mRNA-1
chr4_1 exon 55612806 55612970 55612806 ID=Msa0557290-mRNA-1:exon:16638;Parent=Msa0557290-mRNA-1
chr4_1 exon 55613089 55613208 55613089 ID=Msa0557290-mRNA-1:exon:16639;Parent=Msa0557290-mRNA-1
chr4_1 exon 55613288 55613363 55613288 ID=Msa0557290-mRNA-1:exon:16640;Parent=Msa0557290-mRNA-1
chr4_1 exon 55614436 55614595 55614436 ID=Msa0557290-mRNA-1:exon:16641;Parent=Msa0557290-mRNA-1
chr4_1 exon 55614692 55615548 55614692 ID=Msa0557290-mRNA-1:exon:16642;Parent=Msa0557290-mRNA-1
chr4_1 exon 55615803 55616066 55615803 ID=Msa0557290-mRNA-1:exon:16643;Parent=Msa0557290-mRNA-1
chr4_1 five_prime_UTR 55610617 55610682 55610617 ID=Msa0557290-mRNA-1:five_prime_utr;Parent=Msa0557290-mRNA-1
chr4_1 five_prime_UTR 55610730 55611039 55610730 ID=Msa0557290-mRNA-1:five_prime_utr;Parent=Msa0557290-mRNA-1
chr4_1 CDS 55611040 55611333 55611040 ID=Msa0557290-mRNA-1:cds;Parent=Msa0557290-mRNA-1
chr4_1 CDS 55611705 55611761 55611705 ID=Msa0557290-mRNA-1:cds;Parent=Msa0557290-mRNA-1
chr4_1 CDS 55612112 55612300 55612112 ID=Msa0557290-mRNA-1:cds;Parent=Msa0557290-mRNA-1
chr4_1 CDS 55612448 55612532 55612448 ID=Msa0557290-mRNA-1:cds;Parent=Msa0557290-mRNA-1
chr4_1 CDS 55612631 55612721 55612631 ID=Msa0557290-mRNA-1:cds;Parent=Msa0557290-mRNA-1
chr4_1 CDS 55612806 55612970 55612806 ID=Msa0557290-mRNA-1:cds;Parent=Msa0557290-mRNA-1
chr4_1 CDS 55613089 55613208 55613089 ID=Msa0557290-mRNA-1:cds;Parent=Msa0557290-mRNA-1
chr4_1 CDS 55613288 55613363 55613288 ID=Msa0557290-mRNA-1:cds;Parent=Msa0557290-mRNA-1
chr4_1 CDS 55614436 55614595 55614436 ID=Msa0557290-mRNA-1:cds;Parent=Msa0557290-mRNA-1
chr4_1 CDS 55614692 55615548 55614692 ID=Msa0557290-mRNA-1:cds;Parent=Msa0557290-mRNA-1
chr4_1 CDS 55615803 55615820 55615803 ID=Msa0557290-mRNA-1:cds;Parent=Msa0557290-mRNA-1
chr4_1 three_prime_UTR 55615821 55616066 55615821 ID=Msa0557290-mRNA-1:three_prime_utr;Parent=Msa0557290-mRNA-1
Gene Sequence

>Msa0557290

ATGATGGGTTTGATTGATCTCAACACTACTGAGGAAGATGAAACACCTTCTTCTGGTTCATCTTCAAGTACAAGTATAGGTAGTGTTGGTGCTGTTGGTTCTGGTTCTGGTTCTTCTGTTTGTTTGGAGCTATGGCATGCTTGTGCTGGTCCTATGATCTCTTTGCCAAAGAAAGGAAGTGTAGTTGTTTACTTCCCTCAAGGACACTTGGAACATCTTCACGATTTTCCGTTATCTTTTTCAGATACTATACCTTCTCATGTGTTCTGTCGTGTTGTTGATGTCAAGCTTCATGCTGAGGAAGGGAACGATGAGGTGTATTGTCAGGTGTTGTTGGTTCCTGAAAGTGAGCAAGTGCAACAAAAGTTGAGGGAAGGGGTAATTGATGGTGATGGTGATGGTGAAGGCGAGGATACTGATGCTGTTATGAAGTCAACAACACCTCACATGTTCTGCAAGACTCTTACTGCTTCTGATACTAGCACTCATGGTGGATTCTCTGTACCTCGTCGAGCAGCCGAAGATTGCTTTCCTCCCCTGGATTACTCTCAACAAAGACCTTCTCAAGAGCTTGTGGCAAAGGATCTGCATGGCCAGGAATGGAAGTTTCGACATATATACAGAGGGCAGCCACGAAGGCATTTGCTTACGACTGGATGGAGTGCATTTGTTAACAAGAAGAAACTTGTATCTGGAGATGCAGTTCTGTTCCTCCGAGGGGAAGATGGCGAATTGAGATTGGGAATCCGCAGGGCAGCTCAATTAAAAAATTGCAGTAACTTTTCATCTATCTCCGGCCAGCAATTGAATCTTGGTAGCCTTAAAGACATAGTTAATGCTTTATCTACTAGATGTGCCTTTAGCATACGCTACAATCCAAGGATTGGTTCATCTGAGTTCATCATACCTATCCGCAAATTCTTAAAAAGCCTTGATTATTCTTACTCAGTTGGAATGAGGTTCAGGATGCGTTTTGAATCTGAAGATGCTGCAGAGCGAAGATTCACAGGATTGATTATTGGAATTACTGATGTGGATCCTGTTAGATGGCCTGGATCAAAATGGAAATGCCTAGTGGTAAGGTGGGATGACATGGAAGCTTCAAGGCTCAACAGGGTTTCACCATGGGAGATTGAGCCCTCAGGCTCATCTTCCACCACCAATAGCTTGATGGCAACTAGTTTGAAGAGGACCAAGACTGGATTGCCTTCATCAAAGCTAGAGTTTCCGGTTCCCAGTAGAATTGGGACATCAGACTTTGGGGAATCACTGCGGTTCCAGAAGGTCTTGCAAGGTCAAGAAATTTTAGGCGTTGATACTACTTTCAATAGTATCAGTGCTCATAGTCACCACCAGTTATCTGAATTACAGAGGTGCTATCCCGGTTCAACCTATCCCGGGATCGCTTCAACAGGAAACAACATCAGAATCCCACAAATGAATTCTGATGTTTCCTGCAATGGCTTTGGTGAATCTTTCCGATTCCAGAAGGTCTTGCAAGGTCAAGAAATACTTCCTAGCCAACCATATGGACAAGCCTTTTCTGTCAACGAGGCTTGTAGAAATGGTCGCTTTGGACTTTTTGATGGTCACCACCAGGTGCCAAGATCCACAAATGGATGGTCTTCTCAGACGAGTAACAACTCACATTTTCATCCATCAGTGTTGATGTACCAGCAAGCGTCAACCATGGATTATAATAACAAAATTAATCCGGTGGAGGATAACGTCCTTCAAAGAGGTTCGTTCTATGCTTCTGAAATGAAAGATGGTACATCTGCCTCAACGCCAACTAATAGGCCTATTTTCCGCGGGCTAGCTCATGAAGACATGAACTCGTTTGGTACACATTCACGCGATTTGGTTGCACTACAGAGAAGCGGTCAAGAGTTGGTTTCCACATGTAAAAGTAGCTGCAGAGTGTTTGGTTTTTCATTAACCGAGGGTGCTCCCATTGCAAATAAAGATGCAGAACCCTCTGTGGTCACTTGCCAGATAAATCCTGGACCTCCCTCCTTCACAAGACATGTTGAAGATGATTTCAATCCAAGGCATTCACTTCGGAGCAAGGCGGTTGAAAATTACTATACCAAAGGCGTGCTGCAGTATTGA
Protein sequence

>Msa0557290

MMGLIDLNTTEEDETPSSGSSSSTSIGSVGAVGSGSGSSVCLELWHACAGPMISLPKKGSVVVYFPQGHLEHLHDFPLSFSDTIPSHVFCRVVDVKLHAEEGNDEVYCQVLLVPESEQVQQKLREGVIDGDGDGEGEDTDAVMKSTTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGQEWKFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGEDGELRLGIRRAAQLKNCSNFSSISGQQLNLGSLKDIVNALSTRCAFSIRYNPRIGSSEFIIPIRKFLKSLDYSYSVGMRFRMRFESEDAAERRFTGLIIGITDVDPVRWPGSKWKCLVVRWDDMEASRLNRVSPWEIEPSGSSSTTNSLMATSLKRTKTGLPSSKLEFPVPSRIGTSDFGESLRFQKVLQGQEILGVDTTFNSISAHSHHQLSELQRCYPGSTYPGIASTGNNIRIPQMNSDVSCNGFGESFRFQKVLQGQEILPSQPYGQAFSVNEACRNGRFGLFDGHHQVPRSTNGWSSQTSNNSHFHPSVLMYQQASTMDYNNKINPVEDNVLQRGSFYASEMKDGTSASTPTNRPIFRGLAHEDMNSFGTHSRDLVALQRSGQELVSTCKSSCRVFGFSLTEGAPIANKDAEPSVVTCQINPGPPSFTRHVEDDFNPRHSLRSKAVENYYTKGVLQY*