AlfalfaGEDB | Msa1009950

M. sativa cultivar zhongmu-4 / Msa1009950

KEGG: -
GO: GO:0002252 GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008104 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009615 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031974 GO:0031981 GO:0033036 GO:0033365 GO:0034504 GO:0034613 GO:0036211 GO:0038023 GO:0040008 GO:0040014 GO:0040015 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045926 GO:0046777 GO:0048519 GO:0048638 GO:0048640 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051179 GO:0051239 GO:0051241 GO:0051607 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0070013 GO:0070727 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564
PFAM: PF08263.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1009950	XP_013447716.1	99.042	626	6	0	1	626	1	626	0.0	1277

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1009950	sp\|Q9LFS4\|NIK1_ARATH	77.600	625	133	4	9	626	14	638	0.0	987

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1009950	A0A072U7I5	99.042	626	6	0	1	626	1	626	0.0	1277

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002580	Msa1009950	0.824077	9.812166e-54	-8.615850e-47
Msa0003080	Msa1009950	0.817041	4.051409e-52	-8.615850e-47
Msa0008040	Msa1009950	0.819445	1.157415e-52	-8.615850e-47
Msa0025160	Msa1009950	0.828033	1.125423e-54	-8.615850e-47
Msa0025580	Msa1009950	0.833130	6.363049e-56	-8.615850e-47
Msa0027280	Msa1009950	0.812763	3.599924e-51	-8.615850e-47
Msa0034210	Msa1009950	0.857146	1.991060e-62	-8.615850e-47
Msa0035340	Msa1009950	0.814790	1.287499e-51	-8.615850e-47
Msa0035380	Msa1009950	0.811252	7.683313e-51	-8.615850e-47
Msa0042640	Msa1009950	0.804683	1.920244e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa1009950	MtrunA17_Chr7g0220741	99.042	626	6	0	1	626	1	626	1277
Msa1009950	MtrunA17_Chr6g0456231	82.588	626	107	2	2	626	1	625	1031
Msa1009950	MtrunA17_Chr0c03g0490031	75.484	620	149	3	8	626	4	621	965
Msa1009950	MtrunA17_Chr5g0413291	67.545	607	190	4	24	626	22	625	826
Msa1009950	MtrunA17_Chr4g0073471	65.440	625	183	6	29	626	22	640	793
Msa1009950	MtrunA17_Chr2g0284101	58.059	608	238	6	24	626	27	622	673
Msa1009950	MtrunA17_Chr2g0278831	52.607	633	254	8	13	626	14	619	592
Msa1009950	MtrunA17_Chr8g0382101	50.921	597	269	10	39	626	25	606	563
Msa1009950	MtrunA17_Chr3g0123891	49.412	595	277	6	39	626	32	609	553
Msa1009950	MtrunA17_Chr2g0278891	50.158	632	271	12	27	626	23	642	553

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa1009950	AT5G16000.1	77.600	625	133	4	9	626	14	638	987
Msa1009950	AT3G25560.1	74.380	605	150	3	26	626	32	635	923
Msa1009950	AT3G25560.3	74.295	603	150	3	26	624	32	633	917
Msa1009950	AT3G25560.2	74.092	606	151	4	26	626	32	636	917
Msa1009950	AT2G23950.1	61.957	644	208	8	2	626	9	634	777
Msa1009950	AT1G60800.1	61.950	636	220	7	5	626	5	632	752
Msa1009950	AT4G30520.1	64.856	589	195	5	16	602	19	597	751
Msa1009950	AT1G60800.2	62.937	572	191	6	69	626	1	565	687
Msa1009950	AT2G23950.2	64.176	522	169	6	2	521	9	514	661
Msa1009950	AT5G45780.1	53.858	635	254	8	8	626	3	614	632

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Find 137 sgRNAs with CRISPR-Local

Find 254 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCTCTTCAAGTTTCCA+AGG	0.549279	7_1:+12384142	None:intergenic
AAAAGGAGCCATGCTTGATT+GGG	0.479996	7_1:-12382860	Msa1009950:intron
AAAATCCATAAAGTCTGAGA+AGG	0.598466	7_1:+12383917	None:intergenic
AAACACGTCAGTCTTCTCGG+AGG	0.780997	7_1:+12382954	None:intergenic
AAAGACGGCAACGCAATTGG+AGG	0.564061	7_1:-12383994	Msa1009950:CDS
AAATGAACTTACCTTTCAAA+CGG	0.417559	7_1:+12383833	None:intergenic
AACTATTATGAAGCTGTAGT+TGG	0.563184	7_1:-12383084	Msa1009950:CDS
AACTGTAGGGCATATTGCAC+CGG	0.530600	7_1:-12382998	Msa1009950:CDS
AAGACTGACGTGTTTGGATT+TGG	0.304849	7_1:-12382946	Msa1009950:CDS
AATAAGATTCTATTCTACCA+TGG	0.621884	7_1:-12386154	Msa1009950:five_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGAAGAGATATAACTCTTCT+TGG	+	chr7_1:12382345-12382364	None:intergenic	30.0%
AATGCTTTGCTTTCTTCTAA+AGG	-	chr7_1:12382405-12382424	Msa1009950:CDS	30.0%
TCTAAAGGAGTAAACTATGA+AGG	-	chr7_1:12382420-12382439	Msa1009950:CDS	30.0%
GAGTATAAAAGAATCTCTAG+TGG	-	chr7_1:12382547-12382566	Msa1009950:CDS	30.0%
TATCAAGATGAAAAAATGGG+CGG	-	chr7_1:12382698-12382717	Msa1009950:intron	30.0%
AGTCATCTAAAAAGGAACTA+AGG	-	chr7_1:12383009-12383028	Msa1009950:CDS	30.0%
CTACAGAATAACAACATAAC+CGG	-	chr7_1:12383063-12383082	Msa1009950:CDS	30.0%
CTGTCTAATAACTTCTTCAT+TGG	-	chr7_1:12383135-12383154	Msa1009950:CDS	30.0%
TTGGTTAAGTTCATGGATAT+TGG	+	chr7_1:12383697-12383716	None:intergenic	30.0%
ATGAACTTAACCAATACTCA+AGG	-	chr7_1:12383703-12383722	Msa1009950:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_1	gene	12382018	12386279	12382018	ID=Msa1009950;Name=Msa1009950
chr7_1	mRNA	12382018	12386279	12382018	ID=Msa1009950-mRNA-1;Parent=Msa1009950;Name=Msa1009950-mRNA-1;_AED=0.09;_eAED=0.09;_QI=315\|1\|1\|1\|1\|1\|11\|277\|626
chr7_1	exon	12382018	12382615	12382018	ID=Msa1009950-mRNA-1:exon:3211;Parent=Msa1009950-mRNA-1
chr7_1	exon	12382861	12383240	12382861	ID=Msa1009950-mRNA-1:exon:3210;Parent=Msa1009950-mRNA-1
chr7_1	exon	12383845	12384186	12383845	ID=Msa1009950-mRNA-1:exon:3209;Parent=Msa1009950-mRNA-1
chr7_1	exon	12384338	12384487	12384338	ID=Msa1009950-mRNA-1:exon:3208;Parent=Msa1009950-mRNA-1
chr7_1	exon	12384573	12384670	12384573	ID=Msa1009950-mRNA-1:exon:3207;Parent=Msa1009950-mRNA-1
chr7_1	exon	12384770	12384829	12384770	ID=Msa1009950-mRNA-1:exon:3206;Parent=Msa1009950-mRNA-1
chr7_1	exon	12384928	12384999	12384928	ID=Msa1009950-mRNA-1:exon:3205;Parent=Msa1009950-mRNA-1
chr7_1	exon	12385095	12385238	12385095	ID=Msa1009950-mRNA-1:exon:3204;Parent=Msa1009950-mRNA-1
chr7_1	exon	12385429	12385500	12385429	ID=Msa1009950-mRNA-1:exon:3203;Parent=Msa1009950-mRNA-1
chr7_1	exon	12385631	12385763	12385631	ID=Msa1009950-mRNA-1:exon:3202;Parent=Msa1009950-mRNA-1
chr7_1	exon	12385856	12386279	12385856	ID=Msa1009950-mRNA-1:exon:3201;Parent=Msa1009950-mRNA-1
chr7_1	five_prime_UTR	12385965	12386279	12385965	ID=Msa1009950-mRNA-1:five_prime_utr;Parent=Msa1009950-mRNA-1
chr7_1	CDS	12385856	12385964	12385856	ID=Msa1009950-mRNA-1:cds;Parent=Msa1009950-mRNA-1
chr7_1	CDS	12385631	12385763	12385631	ID=Msa1009950-mRNA-1:cds;Parent=Msa1009950-mRNA-1
chr7_1	CDS	12385429	12385500	12385429	ID=Msa1009950-mRNA-1:cds;Parent=Msa1009950-mRNA-1
chr7_1	CDS	12385095	12385238	12385095	ID=Msa1009950-mRNA-1:cds;Parent=Msa1009950-mRNA-1
chr7_1	CDS	12384928	12384999	12384928	ID=Msa1009950-mRNA-1:cds;Parent=Msa1009950-mRNA-1
chr7_1	CDS	12384770	12384829	12384770	ID=Msa1009950-mRNA-1:cds;Parent=Msa1009950-mRNA-1
chr7_1	CDS	12384573	12384670	12384573	ID=Msa1009950-mRNA-1:cds;Parent=Msa1009950-mRNA-1
chr7_1	CDS	12384338	12384487	12384338	ID=Msa1009950-mRNA-1:cds;Parent=Msa1009950-mRNA-1
chr7_1	CDS	12383845	12384186	12383845	ID=Msa1009950-mRNA-1:cds;Parent=Msa1009950-mRNA-1
chr7_1	CDS	12382861	12383240	12382861	ID=Msa1009950-mRNA-1:cds;Parent=Msa1009950-mRNA-1
chr7_1	CDS	12382295	12382615	12382295	ID=Msa1009950-mRNA-1:cds;Parent=Msa1009950-mRNA-1
chr7_1	three_prime_UTR	12382018	12382294	12382018	ID=Msa1009950-mRNA-1:three_prime_utr;Parent=Msa1009950-mRNA-1

Gene Sequence

>Msa1009950

ATGATGAAGCCAAGAAGAGTTATATCTCTTCTTTGTTTTGTGTTTTTCTTGTTTTTGAGCTTTTCAAGTTCAAATGCTTTGCTTTCTTCTAAAGGAGTAAACTATGAAGTGCAAGCTTTAATGAGTATAAAAGAATCTCTAGTGGATCCACATGGTGTTCTAGAAAATTGGGATGGTGATGCAGTTGATCCATGTAGTTGGACTATGGTTACATGTTCTAGTGAGAATCTTGTCACTGGCTTGGGCACTCCAAGTCAAAGTTTATCAGGTACTTTATCTCCAAGCATAGGGAATTTAACCAACCTTCAGATGGTGCTGCTACAGAATAACAACATAACCGGATCAATCCCTTCGGAGTTAGGAAAACTTCCTAAGCTTCAAACTCTTGATCTGTCTAATAACTTCTTCATTGGTGAAATTCCTACCTCTCTTAGTCACTTAAGAAGCCTTCAATACTTGAGGTTGAATAATAACAGTCTTGTTGGTGAATGTTCAGAATCACTAGCTAACATGACACAACTTGTTTTACTTGATCTGTCCTACAACAATCTTAGTGGACCAGTACCAAGAATTTTGGCCAAATCATTTAGCATTGTTGGTAATCCTCTTGTTTGTGCTACTGGAAATGAACCAAACTGTCATGGGATGACATTGATGCCAATATCCATGAACTTAACCAATACTCAAGATTCTGTACCACCAAGTAAACCAAAAGGTCATAAAATGGCTATTGTGTTTGGCTTGAGTCTTGGATGTCTATGCCTAATAGTCATTGGTTTTGGACTTGTTCTTTGGTGGAGACACAAGCATAATCAACAAGCATTCTTTGATGTCAAAGACCGGCACCATGAAGAAGTTTACCTTGGAAACTTGAAGAGGTTTTCATTCAGAGAACTCCAAGTTGCTACAAATAACTTCAGCAGCAAAAACTTAGTCGGAAAAGGTGGTTTTGGAAATGTCTACAAAGGAATTCTTTCAGATGGCACTGTAATAGCCGTAAAGAGGCTTAAAGACGGCAACGCAATTGGAGGAGAGATTCAATTTCAGACTGAAGTTGAAATGATTAGCCTTGCAGTTCATAGAAACCTTCTCAGACTTTATGGATTTTGCATGACATCATCAGAAAGGCTTTTAGTTTATCCTTACATGTGCAATGGAAGTGTTGCTTCCCGTTTGAAAGGTAAACCAGTCTTGGATTGGGGAACAAGGAAGAACATTGCATTAGGAGCAGCAAGGGGACTACTATACCTTCATGAACAATGTGATCCAAAGATAATCCATAGGGACGTCAAAGCTGCAAACATATTGCTTGATAACTATTATGAAGCTGTAGTTGGTGATTTTGGTTTGGCAAAGCTTTTGGATCATCAAGATTCACATGTCACAACTGCAGTGAGAGGAACTGTAGGGCATATTGCACCGGAATATCTTTCCACAGGACAATCCTCCGAGAAGACTGACGTGTTTGGATTTGGCATTCTTCTCCTTGAGTTAATCACAGGTCAGAGAGCCTTAGAATTTGGAAAAGCAGCTAACCAAAAAGGAGCCATGCTTGATTGGGTGAAGAAAATTCATCAAGAGAAGAAACTGGAATTACTTGTAGACAAGGATCTAAAGAGCAACTATGACAAAATTGAGCTTGAAGAAATGGTTCAAGTGGCACTCTTGTGTACTCAATATCTTCCAAGCCATAGACCTAAAATGTCCGAGGTTGTACGCATGCTCGAAGGTGATGGACTAGCCGAAAGATGGGAAGCTTCTCAAAAAACCGACACTTCCAAATTCAAACATCAAGAATCATCTTTATCAGATAGATATTCTGATCTTACTGATGATTCTTTGTTATTAGTCCAAGCTATGGAGCTATCAGGACCAAGGTGA

Protein sequence

>Msa1009950

MMKPRRVISLLCFVFFLFLSFSSSNALLSSKGVNYEVQALMSIKESLVDPHGVLENWDGDAVDPCSWTMVTCSSENLVTGLGTPSQSLSGTLSPSIGNLTNLQMVLLQNNNITGSIPSELGKLPKLQTLDLSNNFFIGEIPTSLSHLRSLQYLRLNNNSLVGECSESLANMTQLVLLDLSYNNLSGPVPRILAKSFSIVGNPLVCATGNEPNCHGMTLMPISMNLTNTQDSVPPSKPKGHKMAIVFGLSLGCLCLIVIGFGLVLWWRHKHNQQAFFDVKDRHHEEVYLGNLKRFSFRELQVATNNFSSKNLVGKGGFGNVYKGILSDGTVIAVKRLKDGNAIGGEIQFQTEVEMISLAVHRNLLRLYGFCMTSSERLLVYPYMCNGSVASRLKGKPVLDWGTRKNIALGAARGLLYLHEQCDPKIIHRDVKAANILLDNYYEAVVGDFGLAKLLDHQDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQRALEFGKAANQKGAMLDWVKKIHQEKKLELLVDKDLKSNYDKIELEEMVQVALLCTQYLPSHRPKMSEVVRMLEGDGLAERWEASQKTDTSKFKHQESSLSDRYSDLTDDSLLLVQAMELSGPR*