Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0563870 | XP_013446598.1 | 95.349 | 516 | 23 | 1 | 18 | 533 | 1 | 515 | 0.0 | 996 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0563870 | sp|A0A1P8B760|AMI4G_ARATH | 62.705 | 488 | 168 | 6 | 44 | 526 | 30 | 508 | 0.0 | 574 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0563870 | A0A072U458 | 95.349 | 516 | 23 | 1 | 18 | 533 | 1 | 515 | 0.0 | 996 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000370 | Msa0563870 | 0.810727 | 9.982949e-51 | -8.615850e-47 |
| Msa0183710 | Msa0563870 | 0.801282 | 9.693250e-49 | -8.615850e-47 |
| Msa0387930 | Msa0563870 | 0.802483 | 5.491576e-49 | -8.615850e-47 |
| Msa0440350 | Msa0563870 | 0.804881 | 1.745791e-49 | -8.615850e-47 |
| Msa0563870 | Msa0577480 | 0.979680 | 1.674381e-148 | -8.615850e-47 |
| Msa0563870 | Msa0577790 | 0.987541 | 1.244619e-170 | -8.615850e-47 |
| Msa0563870 | Msa0722890 | 0.808382 | 3.183430e-50 | -8.615850e-47 |
| Msa0563870 | Msa0723090 | 0.802560 | 5.294018e-49 | -8.615850e-47 |
| Msa0563870 | Msa0931020 | 0.800428 | 1.448054e-48 | -8.615850e-47 |
| Msa0563870 | Msa1082410 | 0.812409 | 4.300773e-51 | -8.615850e-47 |
| Msa0563870 | Msa1088320 | 0.803057 | 4.180292e-49 | -8.615850e-47 |
| Msa0563870 | Msa1090280 | 0.805597 | 1.236264e-49 | -8.615850e-47 |
| Msa0563870 | Msa1257200 | 0.800668 | 1.293911e-48 | -8.615850e-47 |
| Msa0563870 | Msa1306820 | 0.974036 | 1.873079e-137 | -8.615850e-47 |
| Msa0563870 | Msa1323070 | 0.801598 | 8.347524e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0563870 | MtrunA17_Chr8g0377691 | 95.349 | 516 | 23 | 1 | 18 | 533 | 1 | 515 | 0.0 | 996 |
| Msa0563870 | MtrunA17_Chr8g0377701 | 91.245 | 514 | 45 | 0 | 18 | 531 | 1 | 514 | 0.0 | 951 |
| Msa0563870 | MtrunA17_Chr8g0377651 | 85.135 | 518 | 72 | 2 | 17 | 533 | 2 | 515 | 0.0 | 886 |
| Msa0563870 | MtrunA17_Chr8g0377681 | 83.789 | 512 | 81 | 2 | 23 | 533 | 3 | 513 | 0.0 | 869 |
| Msa0563870 | MtrunA17_Chr8g0377641 | 83.591 | 518 | 78 | 3 | 18 | 533 | 1 | 513 | 0.0 | 869 |
| Msa0563870 | MtrunA17_Chr4g0037521 | 59.524 | 504 | 189 | 9 | 33 | 526 | 9 | 507 | 0.0 | 565 |
| Msa0563870 | MtrunA17_Chr4g0037491 | 57.049 | 305 | 117 | 7 | 223 | 517 | 1 | 301 | 1.56e-112 | 336 |
| Msa0563870 | MtrunA17_Chr8g0377661 | 87.179 | 78 | 10 | 0 | 456 | 533 | 1 | 78 | 1.25e-39 | 139 |
| Msa0563870 | MtrunA17_Chr8g0385461 | 33.600 | 250 | 149 | 7 | 58 | 305 | 162 | 396 | 2.15e-30 | 125 |
| Msa0563870 | MtrunA17_Chr4g0037501 | 64.894 | 94 | 31 | 2 | 123 | 214 | 2 | 95 | 6.42e-30 | 112 |
| Msa0563870 | MtrunA17_Chr3g0097801 | 33.457 | 269 | 168 | 5 | 71 | 335 | 55 | 316 | 4.60e-26 | 112 |
| Msa0563870 | MtrunA17_Chr2g0279961 | 24.950 | 501 | 311 | 13 | 50 | 518 | 121 | 588 | 2.19e-21 | 97.8 |
| Msa0563870 | MtrunA17_Chr3g0130801 | 25.703 | 498 | 315 | 21 | 58 | 533 | 200 | 664 | 4.91e-17 | 84.3 |
| Msa0563870 | MtrunA17_Chr8g0384851 | 23.242 | 512 | 329 | 17 | 39 | 521 | 117 | 593 | 2.11e-13 | 72.8 |
| Msa0563870 | MtrunA17_Chr1g0191741 | 39.496 | 119 | 66 | 3 | 158 | 275 | 63 | 176 | 4.19e-13 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0563870 | AT4G34880.2 | 62.705 | 488 | 168 | 6 | 44 | 526 | 30 | 508 | 0.0 | 574 |
| Msa0563870 | AT4G34880.1 | 55.852 | 487 | 157 | 7 | 44 | 526 | 30 | 462 | 4.87e-178 | 509 |
| Msa0563870 | AT5G07360.1 | 33.469 | 245 | 148 | 7 | 58 | 299 | 204 | 436 | 3.57e-28 | 119 |
| Msa0563870 | AT5G07360.3 | 33.469 | 245 | 148 | 7 | 58 | 299 | 204 | 436 | 3.57e-28 | 119 |
| Msa0563870 | AT5G07360.2 | 33.061 | 245 | 142 | 8 | 58 | 299 | 204 | 429 | 4.45e-25 | 109 |
| Msa0563870 | AT3G25660.1 | 33.673 | 294 | 176 | 8 | 70 | 356 | 57 | 338 | 4.82e-25 | 109 |
| Msa0563870 | AT5G64440.1 | 27.734 | 256 | 169 | 5 | 53 | 301 | 125 | 371 | 2.49e-17 | 85.9 |
| Msa0563870 | AT1G08980.1 | 40.336 | 119 | 65 | 3 | 158 | 275 | 64 | 177 | 7.58e-14 | 73.9 |
Find 149 sgRNAs with CRISPR-Local
Find 308 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACAATATACTCACCGATTT+TGG | 0.052657 | 4_1:+64315827 | None:intergenic |
| AGTCCATATCTGTTACATTT+TGG | 0.120231 | 4_1:+64315071 | None:intergenic |
| GTTGCATGGAATACCTATTT+TGG | 0.183488 | 4_1:-64318353 | Msa0563870:CDS |
| AAAGCTGGGGCTATTATATT+AGG | 0.207407 | 4_1:-64318223 | Msa0563870:CDS |
| GTGAAGCAACTAATTCTTTC+AGG | 0.216627 | 4_1:+64315894 | None:intergenic |
| CTCCTTTGAGAACCGGGTTT+TGG | 0.235272 | 4_1:+64318461 | None:intergenic |
| TGGGTTAAAGCCATCTTATT+TGG | 0.251946 | 4_1:+64315091 | None:intergenic |
| AATATCAGTAGCAGCAAATT+TGG | 0.254182 | 4_1:-64316665 | Msa0563870:CDS |
| GTGTCTTGCCTTGGGCTAAT+TGG | 0.289799 | 4_1:+64316529 | None:intergenic |
| TGAAAATCAACGGGACAATT+AGG | 0.295722 | 4_1:-64315140 | Msa0563870:three_prime_UTR |
| TGAGTGAGTGGTCACATTAC+AGG | 0.307159 | 4_1:-64318189 | Msa0563870:CDS |
| AATTGAGCATAGCCACCTTT+TGG | 0.307622 | 4_1:+64316258 | None:intergenic |
| ATGACAAGATTGTCACATAA+TGG | 0.309835 | 4_1:-64315555 | Msa0563870:CDS |
| TTGATGTTAACTGCTTTCTT+TGG | 0.312414 | 4_1:+64318521 | None:intergenic |
| TCTGCTTGTGCTAATGCATC+TGG | 0.313056 | 4_1:+64318424 | None:intergenic |
| ATGTTATCCTTAACCAAAAT+AGG | 0.317243 | 4_1:+64318340 | None:intergenic |
| CAGCCTGCAGCATGAGATCT+TGG | 0.321727 | 4_1:+64315625 | None:intergenic |
| GTTTGGAAATGACACATTAC+TGG | 0.325517 | 4_1:-64316178 | Msa0563870:CDS |
| TACCCAACTGTGTCTTGCCT+TGG | 0.328875 | 4_1:+64316520 | None:intergenic |
| CATACATGAAGGGCATAAAA+TGG | 0.329473 | 4_1:+64316609 | None:intergenic |
| GCTGAAAACACAAACGGAAT+TGG | 0.344147 | 4_1:-64315606 | Msa0563870:CDS |
| TGGATTGAGAGGAAAGAGAT+TGG | 0.350640 | 4_1:-64316223 | Msa0563870:CDS |
| GTGCTTTGGTCCTTCTCTCT+TGG | 0.365774 | 4_1:+64318392 | None:intergenic |
| AGACTTACCTTAACGTGTTT+AGG | 0.366426 | 4_1:+64316136 | None:intergenic |
| TCCAATACTCCTTTGAGAAC+CGG | 0.372772 | 4_1:+64318454 | None:intergenic |
| AAGCACCTGGTTCTCTTTCA+AGG | 0.377380 | 4_1:-64318375 | Msa0563870:CDS |
| ACCCAACTGTGTCTTGCCTT+GGG | 0.380722 | 4_1:+64316521 | None:intergenic |
| GTAAGAATATACTACGAGTT+TGG | 0.386299 | 4_1:-64316195 | Msa0563870:CDS |
| TGACAAGATTGTCACATAAT+GGG | 0.387697 | 4_1:-64315554 | Msa0563870:CDS |
| CTTGCCATTGGAGGTTATCC+TGG | 0.389584 | 4_1:-64315462 | Msa0563870:CDS |
| TCAGATACAGTCCTGCAAAT+AGG | 0.391218 | 4_1:+64316357 | None:intergenic |
| AACCCAAAATGTAACAGATA+TGG | 0.392072 | 4_1:-64315074 | Msa0563870:three_prime_UTR |
| TGAAAGAGAACCAGGTGCTT+TGG | 0.397701 | 4_1:+64318378 | None:intergenic |
| TTTGCTGCTACTGATATTGC+TGG | 0.399338 | 4_1:+64316670 | None:intergenic |
| GTTGTTGTTGATAGCATAGA+AGG | 0.400557 | 4_1:+64318601 | None:intergenic |
| TTCTTTCAGGTACTTATTCA+AGG | 0.401325 | 4_1:+64315907 | None:intergenic |
| CAGCCATTTGGAATTTGCTT+CGG | 0.404070 | 4_1:-64315408 | Msa0563870:CDS |
| AAGGGAGTGTAACTAGTAGA+AGG | 0.404094 | 4_1:+64318620 | None:intergenic |
| TAAGCAATTTCAATCAACTT+TGG | 0.417086 | 4_1:+64315366 | None:intergenic |
| AGCTACACCTAAACACGTTA+AGG | 0.417453 | 4_1:-64316143 | Msa0563870:intron |
| CTGAAAACACAAACGGAATT+GGG | 0.420174 | 4_1:-64315605 | Msa0563870:CDS |
| TGGTCACATTACAGGTCTAA+TGG | 0.420524 | 4_1:-64318181 | Msa0563870:CDS |
| GCTCAATTTCTAAAGAAAGA+TGG | 0.421932 | 4_1:-64316243 | Msa0563870:CDS |
| TATGAAAAGGATCAGCCATT+TGG | 0.422331 | 4_1:-64315420 | Msa0563870:CDS |
| CCCGGTTCTCAAAGGAGTAT+TGG | 0.431167 | 4_1:-64318455 | Msa0563870:CDS |
| GTTAACAAGTTAAGGAAAGC+TGG | 0.436209 | 4_1:-64318238 | Msa0563870:CDS |
| CAAGGATCATCCAATGTGTA+TGG | 0.439013 | 4_1:+64316709 | None:intergenic |
| AAGCTGGGGCTATTATATTA+GGG | 0.441388 | 4_1:-64318222 | Msa0563870:CDS |
| GCTTTCTTTGGAAGGCAAGT+TGG | 0.441871 | 4_1:+64318533 | None:intergenic |
| CAGGTGTAGTTAACAAGTTA+AGG | 0.444024 | 4_1:-64318246 | Msa0563870:CDS |
| TGATGCTGTGGTAATACCTT+TGG | 0.445327 | 4_1:-64315502 | Msa0563870:CDS |
| TCGTAGGAGAAACTTGAGTA+TGG | 0.447769 | 4_1:-64315648 | Msa0563870:intron |
| TTATCACCAACGTTGTTGAT+TGG | 0.450202 | 4_1:-64315165 | Msa0563870:three_prime_UTR |
| AGAAGAAGCAGTCGTATTCA+TGG | 0.453916 | 4_1:+64315262 | None:intergenic |
| TTTAGTAACATACTTGCCAT+TGG | 0.461482 | 4_1:-64315474 | Msa0563870:CDS |
| CCAATACTCCTTTGAGAACC+GGG | 0.467786 | 4_1:+64318455 | None:intergenic |
| TTTAAGCCAACTGTTGGTAC+TGG | 0.469071 | 4_1:+64314939 | None:intergenic |
| GCCCAAGGCAAGACACAGTT+GGG | 0.473558 | 4_1:-64316522 | Msa0563870:intron |
| CAACAAGAAACACCCAAAAT+CGG | 0.477192 | 4_1:-64315840 | Msa0563870:intron |
| TTAACTACACCTGCATCTCT+TGG | 0.477941 | 4_1:+64318256 | None:intergenic |
| GTCGTATTCATGGGAATTGA+AGG | 0.479685 | 4_1:+64315272 | None:intergenic |
| GAGAGGAAAGAGATTGGGAG+TGG | 0.480046 | 4_1:-64316217 | Msa0563870:CDS |
| TCATGTATGAACTCAGTAGT+AGG | 0.484329 | 4_1:-64316595 | Msa0563870:CDS |
| GGTTCTCTTTCAAGGTTGCA+TGG | 0.486306 | 4_1:-64318367 | Msa0563870:CDS |
| ATCAAACTTCTAACTTTCGA+AGG | 0.491265 | 4_1:+64315304 | None:intergenic |
| TGATTGGTCTGAAAATCAAC+GGG | 0.491915 | 4_1:-64315149 | Msa0563870:three_prime_UTR |
| GGATTGAGAGGAAAGAGATT+GGG | 0.491920 | 4_1:-64316222 | Msa0563870:CDS |
| AATGGCAAGTATGTTACTAA+AGG | 0.492484 | 4_1:+64315476 | None:intergenic |
| CCATTTGGAATTTGCTTCGG+AGG | 0.497867 | 4_1:-64315405 | Msa0563870:CDS |
| TTAACAAGTTAAGGAAAGCT+GGG | 0.500893 | 4_1:-64318237 | Msa0563870:CDS |
| GATAAGTTCGCCAAATAAGA+TGG | 0.505472 | 4_1:-64315101 | Msa0563870:three_prime_UTR |
| ATTTGCTTCGGAGGTTTGAA+AGG | 0.508083 | 4_1:-64315396 | Msa0563870:CDS |
| AAAATTGTCGATGCCTGCTA+TGG | 0.508490 | 4_1:+64316314 | None:intergenic |
| TCAGTAGTGCCAAGAGATGC+AGG | 0.509284 | 4_1:-64318265 | Msa0563870:CDS |
| GCATCAAAGTATATCCCAAA+AGG | 0.517964 | 4_1:-64316273 | Msa0563870:CDS |
| TGTTAACTGCTTTCTTTGGA+AGG | 0.518372 | 4_1:+64318525 | None:intergenic |
| TGCAACCTTGAAAGAGAACC+AGG | 0.523206 | 4_1:+64318370 | None:intergenic |
| TCTAACTTTCGAAGGGGAGG+TGG | 0.524924 | 4_1:+64315312 | None:intergenic |
| CTAAAGAAAGATGGATTGAG+AGG | 0.525250 | 4_1:-64316234 | Msa0563870:CDS |
| AGTAACATACTTGCCATTGG+AGG | 0.525648 | 4_1:-64315471 | Msa0563870:CDS |
| TGGCCAAGATCTCATGCTGC+AGG | 0.534153 | 4_1:-64315628 | Msa0563870:CDS |
| TATACTGCATTATAGATGCT+TGG | 0.535565 | 4_1:-64318719 | Msa0563870:CDS |
| TACGTTCTTGAAACCATAGC+AGG | 0.539094 | 4_1:-64316327 | Msa0563870:CDS |
| TGTTCCAGCAGGATATGAAA+AGG | 0.539625 | 4_1:-64315433 | Msa0563870:CDS |
| CCTCCGAAGCAAATTCCAAA+TGG | 0.542753 | 4_1:+64315405 | None:intergenic |
| GATCAAAGTTGCTTGCTCAA+AGG | 0.544559 | 4_1:+64315341 | None:intergenic |
| TGCTTCACCAGTGAAAAGCT+TGG | 0.546928 | 4_1:-64315879 | Msa0563870:CDS |
| ACTACTGAGTTCATACATGA+AGG | 0.549148 | 4_1:+64316598 | None:intergenic |
| TTTCAAGACTCGTGGAGTCA+TGG | 0.550445 | 4_1:-64318686 | Msa0563870:CDS |
| TGCTAGAGGTGGACAAGGAA+AGG | 0.550614 | 4_1:-64318140 | Msa0563870:intron |
| GATAAGCTAAACACTACTGC+AGG | 0.551568 | 4_1:-64318307 | Msa0563870:CDS |
| TTGTTGTTGATAGCATAGAA+GGG | 0.551701 | 4_1:+64318602 | None:intergenic |
| ACTGCATTATAGATGCTTGG+TGG | 0.552536 | 4_1:-64318716 | Msa0563870:CDS |
| TCAAACTTCTAACTTTCGAA+GGG | 0.553186 | 4_1:+64315305 | None:intergenic |
| GGCTAGTGGATTCTCAATCA+AGG | 0.555061 | 4_1:-64318575 | Msa0563870:CDS |
| AGCCCAAGGCAAGACACAGT+TGG | 0.555092 | 4_1:-64316523 | Msa0563870:CDS |
| CCTGCTGGAACAATCACTCC+AGG | 0.559268 | 4_1:+64315444 | None:intergenic |
| AGCTCACCAGTACCAACAGT+TGG | 0.559686 | 4_1:-64314945 | Msa0563870:three_prime_UTR |
| CCTGGAGTGATTGTTCCAGC+AGG | 0.563666 | 4_1:-64315444 | Msa0563870:CDS |
| GGAAGGCCACTTTGAGTGAG+TGG | 0.565034 | 4_1:-64318201 | Msa0563870:CDS |
| TTGATTGGTCTGAAAATCAA+CGG | 0.565999 | 4_1:-64315150 | Msa0563870:three_prime_UTR |
| TCAACAACAACCTTGGCTAG+TGG | 0.566924 | 4_1:-64318589 | Msa0563870:CDS |
| GATTCAACTTTCAAGACTCG+TGG | 0.569084 | 4_1:-64318694 | Msa0563870:CDS |
| CTAATGGAGCTCCTAGCGGT+TGG | 0.569270 | 4_1:-64318165 | Msa0563870:CDS |
| GTTGGTCTCACTAGTAGAGC+AGG | 0.569449 | 4_1:-64316559 | Msa0563870:CDS |
| CTGCAGGCTGAAAACACAAA+CGG | 0.569958 | 4_1:-64315612 | Msa0563870:CDS |
| ATCCAAAACCCGGTTCTCAA+AGG | 0.571970 | 4_1:-64318463 | Msa0563870:CDS |
| GATTGAGAATCCACTAGCCA+AGG | 0.574276 | 4_1:+64318579 | None:intergenic |
| TTTGCTTCGGAGGTTTGAAA+GGG | 0.576489 | 4_1:-64315395 | Msa0563870:CDS |
| GAAGAAGCAGTCGTATTCAT+GGG | 0.582811 | 4_1:+64315263 | None:intergenic |
| AAGAAATAAACTTGATGCTG+TGG | 0.585547 | 4_1:-64315514 | Msa0563870:CDS |
| CTACTGAGTTCATACATGAA+GGG | 0.587717 | 4_1:+64316599 | None:intergenic |
| GGTTCTCAAAGGAGTATTGG+AGG | 0.589717 | 4_1:-64318452 | Msa0563870:CDS |
| CCAAATTAAAATCCAAAACC+CGG | 0.591273 | 4_1:-64318473 | Msa0563870:CDS |
| CCTAGCGGTTGGAGTGCTAG+AGG | 0.596039 | 4_1:-64318154 | Msa0563870:CDS |
| TATGCTATCAACAACAACCT+TGG | 0.596156 | 4_1:-64318596 | Msa0563870:CDS |
| TTCAGACCAATCAACAACGT+TGG | 0.596436 | 4_1:+64315159 | None:intergenic |
| CCTCTAGCACTCCAACCGCT+AGG | 0.596959 | 4_1:+64318154 | None:intergenic |
| ATGTGACCACTCACTCAAAG+TGG | 0.600148 | 4_1:+64318195 | None:intergenic |
| TCGTATTCATGGGAATTGAA+GGG | 0.601400 | 4_1:+64315273 | None:intergenic |
| GAGAGAAGGACCAAAGCACC+TGG | 0.601549 | 4_1:-64318388 | Msa0563870:CDS |
| CACTCCAGGATAACCTCCAA+TGG | 0.611824 | 4_1:+64315458 | None:intergenic |
| TTCTTCAAAATCAGGCGAAG+AGG | 0.612164 | 4_1:-64316025 | Msa0563870:intron |
| ACTTCTAACTTTCGAAGGGG+AGG | 0.613064 | 4_1:+64315309 | None:intergenic |
| GTATTCATGGGAATTGAAGG+GGG | 0.613740 | 4_1:+64315275 | None:intergenic |
| GATCCTTGTGGATCAAGTAG+TGG | 0.622632 | 4_1:-64316694 | Msa0563870:CDS |
| TGGGGCTATTATATTAGGGA+AGG | 0.623176 | 4_1:-64318218 | Msa0563870:CDS |
| CGTATTCATGGGAATTGAAG+GGG | 0.624730 | 4_1:+64315274 | None:intergenic |
| AGGGCATAAAATGGAGCCAT+CGG | 0.628207 | 4_1:+64316618 | None:intergenic |
| TCAAAGTATATCCCAAAAGG+TGG | 0.630247 | 4_1:-64316270 | Msa0563870:CDS |
| TACACATTGGATGATCCTTG+TGG | 0.640179 | 4_1:-64316706 | Msa0563870:CDS |
| AGCGGTTGGAGTGCTAGAGG+TGG | 0.641094 | 4_1:-64318151 | Msa0563870:CDS |
| ATAAAGCTGACCAAGAGAGA+AGG | 0.642713 | 4_1:-64318402 | Msa0563870:CDS |
| CTACTAGTGAGACCAACCGT+TGG | 0.644995 | 4_1:+64316565 | None:intergenic |
| AATTTGGTGACTGTGTCACT+TGG | 0.645354 | 4_1:-64316649 | Msa0563870:CDS |
| GTAGGCATCAAACCAACGGT+TGG | 0.648249 | 4_1:-64316577 | Msa0563870:CDS |
| AAGAGAGCTAGCACATGCTG+AGG | 0.651382 | 4_1:+64318663 | None:intergenic |
| GTGTAGTTCCAATTAGCCCA+AGG | 0.651600 | 4_1:-64316537 | Msa0563870:CDS |
| TGGAGTGCTAGAGGTGGACA+AGG | 0.653815 | 4_1:-64318145 | Msa0563870:CDS |
| ATTCATGGGAATTGAAGGGG+GGG | 0.660747 | 4_1:+64315277 | None:intergenic |
| TAACAAGTTAAGGAAAGCTG+GGG | 0.661025 | 4_1:-64318236 | Msa0563870:CDS |
| TATTCATGGGAATTGAAGGG+GGG | 0.662700 | 4_1:+64315276 | None:intergenic |
| ATGTTACTAAAGGATGCCAA+AGG | 0.670433 | 4_1:+64315486 | None:intergenic |
| CAAACTTCTAACTTTCGAAG+GGG | 0.687115 | 4_1:+64315306 | None:intergenic |
| AGTAGTAGGCATCAAACCAA+CGG | 0.690720 | 4_1:-64316581 | Msa0563870:CDS |
| TGTGCAGAATCCATACACAT+TGG | 0.705508 | 4_1:-64316719 | Msa0563870:intron |
| AGGTCTAATGGAGCTCCTAG+CGG | 0.708611 | 4_1:-64318169 | Msa0563870:CDS |
| TCACTTGGTACTGAAACCGA+TGG | 0.716676 | 4_1:-64316634 | Msa0563870:CDS |
| GGTCCACTACTTGATCCACA+AGG | 0.733820 | 4_1:+64316691 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATTCATATTACTTAAAT+AGG | - | chr4_1:64316482-64316501 | Msa0563870:intron | 10.0% |
| !!! | TGACTAGTTTTTTTTTATTA+AGG | + | chr4_1:64315807-64315826 | None:intergenic | 15.0% |
| !! | TAAAACTGTTCATAATATAT+AGG | + | chr4_1:64316047-64316066 | None:intergenic | 15.0% |
| !!! | ATAAAGTTTTTCATCTTAAG+TGG | - | chr4_1:64315744-64315763 | Msa0563870:intron | 20.0% |
| !! | TCACTAATATAATATCCAAT+GGG | - | chr4_1:64315824-64315843 | Msa0563870:intron | 20.0% |
| !!! | TAATATATAGGCTTTTAAAC+AGG | + | chr4_1:64316035-64316054 | None:intergenic | 20.0% |
| !! | CAATTTGATCTAAGTTTAAA+TGG | - | chr4_1:64316073-64316092 | Msa0563870:intron | 20.0% |
| !!! | ATAATCAACTTGAGTTTTTA+GGG | - | chr4_1:64316135-64316154 | Msa0563870:intron | 20.0% |
| !! | ATATTCAAGATAAATTCATG+AGG | - | chr4_1:64316179-64316198 | Msa0563870:CDS | 20.0% |
| !! | TATAAACTAGAATCCAAAAT+TGG | + | chr4_1:64316345-64316364 | None:intergenic | 20.0% |
| !!! | TTAAGCCTATTTAACTTAAA+AGG | + | chr4_1:64316554-64316573 | None:intergenic | 20.0% |
| !!! | ACTTTTTTCTTAAATAGAGA+AGG | + | chr4_1:64316590-64316609 | None:intergenic | 20.0% |
| !!! | AAAATATTCACTCACTTTTT+TGG | + | chr4_1:64316828-64316847 | None:intergenic | 20.0% |
| !!! | AAAAAGTGAGTGAATATTTT+TGG | - | chr4_1:64316828-64316847 | Msa0563870:intron | 20.0% |
| !!! | CATAATGAAGTTATTACTTT+TGG | + | chr4_1:64316857-64316876 | None:intergenic | 20.0% |
| !! | ATTTAATAGCAAAATGTCTT+TGG | + | chr4_1:64317253-64317272 | None:intergenic | 20.0% |
| !!! | ATTATCAAATAATCGTTTTC+AGG | - | chr4_1:64318671-64318690 | Msa0563870:CDS | 20.0% |
| !!! | TTTGGATTTTAATTTGGTTG+AGG | + | chr4_1:64315186-64315205 | None:intergenic | 25.0% |
| ! | ATGTTATCCTTAACCAAAAT+AGG | + | chr4_1:64315325-64315344 | None:intergenic | 25.0% |
| ! | GTCACTAATATAATATCCAA+TGG | - | chr4_1:64315823-64315842 | Msa0563870:intron | 25.0% |
| !!! | GCTTAGGCTTTAAAAAAATA+TGG | + | chr4_1:64315940-64315959 | None:intergenic | 25.0% |
| !! | CATAATCAACTTGAGTTTTT+AGG | - | chr4_1:64316134-64316153 | Msa0563870:intron | 25.0% |
| ! | TTCATATTACTTAAATAGGC+CGG | - | chr4_1:64316486-64316505 | Msa0563870:intron | 25.0% |
| ! | CTCTATTTAAGAAAAAAGTC+TGG | - | chr4_1:64316591-64316610 | Msa0563870:CDS | 25.0% |
| !!! | TGTTGACTTAAAGAAAACAT+AGG | + | chr4_1:64317198-64317217 | None:intergenic | 25.0% |
| ! | CTTTATGTAACAAATAGGAA+TGG | + | chr4_1:64317945-64317964 | None:intergenic | 25.0% |
| ! | AATTGTTGTATAAACATCGT+AGG | - | chr4_1:64317998-64318017 | Msa0563870:intron | 25.0% |
| ! | TAAGCAATTTCAATCAACTT+TGG | + | chr4_1:64318299-64318318 | None:intergenic | 25.0% |
| !! | TTGTTGTTGATAGCATAGAA+GGG | + | chr4_1:64315063-64315082 | None:intergenic | 30.0% |
| TTGATGTTAACTGCTTTCTT+TGG | + | chr4_1:64315144-64315163 | None:intergenic | 30.0% | |
| CCAAATTAAAATCCAAAACC+CGG | - | chr4_1:64315189-64315208 | Msa0563870:three_prime_UTR | 30.0% | |
| !!! | TGGAATACCTATTTTGGTTA+AGG | - | chr4_1:64315315-64315334 | Msa0563870:CDS | 30.0% |
| TTAACAAGTTAAGGAAAGCT+GGG | - | chr4_1:64315425-64315444 | Msa0563870:CDS | 30.0% | |
| ! | TACTTAATTTGACCATGATC+TGG | - | chr4_1:64315567-64315586 | Msa0563870:CDS | 30.0% |
| !!! | TTTATCCCTCACTCTTTTTT+GGG | + | chr4_1:64315712-64315731 | None:intergenic | 30.0% |
| !!! | ATTTATCCCTCACTCTTTTT+TGG | + | chr4_1:64315713-64315732 | None:intergenic | 30.0% |
| ATCTTAAGTGGTAGAGTTAT+AGG | - | chr4_1:64315756-64315775 | Msa0563870:intron | 30.0% | |
| !! | GAACTTTTTGATAGCTTATG+AGG | - | chr4_1:64315781-64315800 | Msa0563870:intron | 30.0% |
| AATATAATATCCAATGGGTG+TGG | - | chr4_1:64315829-64315848 | Msa0563870:intron | 30.0% | |
| !! | AGGCTTTAAAAAAATATGGC+AGG | + | chr4_1:64315936-64315955 | None:intergenic | 30.0% |
| !!! | ATTTTTTTAAAGCCTAAGCC+TGG | - | chr4_1:64315941-64315960 | Msa0563870:CDS | 30.0% |
| AAGATAAATTCATGAGGAAG+TGG | - | chr4_1:64316185-64316204 | Msa0563870:CDS | 30.0% | |
| AGATAAATTCATGAGGAAGT+GGG | - | chr4_1:64316186-64316205 | Msa0563870:CDS | 30.0% | |
| CATTAACCATTTCTAAATGC+AGG | + | chr4_1:64316230-64316249 | None:intergenic | 30.0% | |
| CTGCATTTAGAAATGGTTAA+TGG | - | chr4_1:64316228-64316247 | Msa0563870:CDS | 30.0% | |
| AAAAGCCTCTTAAGCTTATT+AGG | + | chr4_1:64316512-64316531 | None:intergenic | 30.0% | |
| ATAGGCTTAAAAAAAAGCCT+AGG | - | chr4_1:64316564-64316583 | Msa0563870:CDS | 30.0% | |
| ! | AATCTCTTCTTAGGTGTTTT+AGG | + | chr4_1:64316749-64316768 | None:intergenic | 30.0% |
| !!! | TATTCACTCACTTTTTTGGT+TGG | + | chr4_1:64316824-64316843 | None:intergenic | 30.0% |
| !!! | AAGTGAGTGAATATTTTTGG+AGG | - | chr4_1:64316831-64316850 | Msa0563870:intron | 30.0% |
| ATACTTAAGTTCCTATGAGA+AGG | + | chr4_1:64316880-64316899 | None:intergenic | 30.0% | |
| CATAGGAACTTAAGTATGAA+TGG | - | chr4_1:64316883-64316902 | Msa0563870:intron | 30.0% | |
| !! | ATGAATGGTTCTAGAAAATG+AGG | - | chr4_1:64316898-64316917 | Msa0563870:intron | 30.0% |
| AATATCAGTAGCAGCAAATT+TGG | - | chr4_1:64316997-64317016 | Msa0563870:intron | 30.0% | |
| CCAATTTGCCACATATATAT+AGG | + | chr4_1:64317170-64317189 | None:intergenic | 30.0% | |
| CCTATATATATGTGGCAAAT+TGG | - | chr4_1:64317167-64317186 | Msa0563870:intron | 30.0% | |
| ! | ATGTGTAAACATTGATTGTG+TGG | - | chr4_1:64317271-64317290 | Msa0563870:intron | 30.0% |
| !!! | TTGATTGTGTGGTTTTGTAT+AGG | - | chr4_1:64317282-64317301 | Msa0563870:intron | 30.0% |
| ! | GCTCAATTTCTAAAGAAAGA+TGG | - | chr4_1:64317419-64317438 | Msa0563870:intron | 30.0% |
| GTAAGAATATACTACGAGTT+TGG | - | chr4_1:64317467-64317486 | Msa0563870:intron | 30.0% | |
| TGTGTACTTTCTTCAAAATC+AGG | - | chr4_1:64317629-64317648 | Msa0563870:intron | 30.0% | |
| ! | TTCTTTCAGGTACTTATTCA+AGG | + | chr4_1:64317758-64317777 | None:intergenic | 30.0% |
| !!! | ACAATATACTCACCGATTTT+GGG | + | chr4_1:64317837-64317856 | None:intergenic | 30.0% |
| !!! | TACAATATACTCACCGATTT+TGG | + | chr4_1:64317838-64317857 | None:intergenic | 30.0% |
| CTGGACTTTATGTAACAAAT+AGG | + | chr4_1:64317950-64317969 | None:intergenic | 30.0% | |
| ATGACAAGATTGTCACATAA+TGG | - | chr4_1:64318107-64318126 | Msa0563870:intron | 30.0% | |
| TGACAAGATTGTCACATAAT+GGG | - | chr4_1:64318108-64318127 | Msa0563870:intron | 30.0% | |
| AAGAAATAAACTTGATGCTG+TGG | - | chr4_1:64318148-64318167 | Msa0563870:CDS | 30.0% | |
| AATGGCAAGTATGTTACTAA+AGG | + | chr4_1:64318189-64318208 | None:intergenic | 30.0% | |
| TTTAGTAACATACTTGCCAT+TGG | - | chr4_1:64318188-64318207 | Msa0563870:CDS | 30.0% | |
| TCAAACTTCTAACTTTCGAA+GGG | + | chr4_1:64318360-64318379 | None:intergenic | 30.0% | |
| ATCAAACTTCTAACTTTCGA+AGG | + | chr4_1:64318361-64318380 | None:intergenic | 30.0% | |
| !! | TTGATTGGTCTGAAAATCAA+CGG | - | chr4_1:64318512-64318531 | Msa0563870:CDS | 30.0% |
| AACCCAAAATGTAACAGATA+TGG | - | chr4_1:64318588-64318607 | Msa0563870:CDS | 30.0% | |
| ! | GTCCATATCTGTTACATTTT+GGG | + | chr4_1:64318593-64318612 | None:intergenic | 30.0% |
| ! | AGTCCATATCTGTTACATTT+TGG | + | chr4_1:64318594-64318613 | None:intergenic | 30.0% |
| !!! | TCAAATAATCGTTTTCAGGT+TGG | - | chr4_1:64318675-64318694 | Msa0563870:CDS | 30.0% |
| !!! | CAAATAATCGTTTTCAGGTT+GGG | - | chr4_1:64318676-64318695 | Msa0563870:CDS | 30.0% |
| !! | GTTGTTGTTGATAGCATAGA+AGG | + | chr4_1:64315064-64315083 | None:intergenic | 35.0% |
| TATGCTATCAACAACAACCT+TGG | - | chr4_1:64315066-64315085 | Msa0563870:three_prime_UTR | 35.0% | |
| TGTTAACTGCTTTCTTTGGA+AGG | + | chr4_1:64315140-64315159 | None:intergenic | 35.0% | |
| !!! | CCGGGTTTTGGATTTTAATT+TGG | + | chr4_1:64315192-64315211 | None:intergenic | 35.0% |
| ! | GTTGCATGGAATACCTATTT+TGG | - | chr4_1:64315309-64315328 | Msa0563870:CDS | 35.0% |
| CAGGTGTAGTTAACAAGTTA+AGG | - | chr4_1:64315416-64315435 | Msa0563870:CDS | 35.0% | |
| GTTAACAAGTTAAGGAAAGC+TGG | - | chr4_1:64315424-64315443 | Msa0563870:CDS | 35.0% | |
| TAACAAGTTAAGGAAAGCTG+GGG | - | chr4_1:64315426-64315445 | Msa0563870:CDS | 35.0% | |
| AAAGCTGGGGCTATTATATT+AGG | - | chr4_1:64315439-64315458 | Msa0563870:CDS | 35.0% | |
| AAGCTGGGGCTATTATATTA+GGG | - | chr4_1:64315440-64315459 | Msa0563870:CDS | 35.0% | |
| TGAATTGAAAAGCCAGATCA+TGG | + | chr4_1:64315582-64315601 | None:intergenic | 35.0% | |
| TTGTTAACCACTGAGCTTAT+CGG | - | chr4_1:64315858-64315877 | Msa0563870:CDS | 35.0% | |
| TCTACTCCTGCATTTAGAAA+TGG | - | chr4_1:64316221-64316240 | Msa0563870:CDS | 35.0% | |
| ATCCATGTTGAATGACCATT+TGG | + | chr4_1:64316303-64316322 | None:intergenic | 35.0% | |
| TCAACATGGATTCTACATCT+TGG | - | chr4_1:64316312-64316331 | Msa0563870:CDS | 35.0% | |
| ACTAGAATCCAAAATTGGCT+TGG | + | chr4_1:64316340-64316359 | None:intergenic | 35.0% | |
| ! | CCTATTTAACTTAAAAGGCC+AGG | + | chr4_1:64316549-64316568 | None:intergenic | 35.0% |
| !!! | CCTGGCCTTTTAAGTTAAAT+AGG | - | chr4_1:64316546-64316565 | Msa0563870:CDS | 35.0% |
| TTCTTAAATAGAGAAGGCCT+AGG | + | chr4_1:64316584-64316603 | None:intergenic | 35.0% | |
| TTTAAGAAAAAAGTCTGGCC+TGG | - | chr4_1:64316596-64316615 | Msa0563870:CDS | 35.0% | |
| ATCCAGACTAATCTCTTCTT+AGG | + | chr4_1:64316758-64316777 | None:intergenic | 35.0% | |
| ACTTCATTATGCCTTCTCAT+AGG | - | chr4_1:64316866-64316885 | Msa0563870:intron | 35.0% | |
| ! | CATACATGAAGGGCATAAAA+TGG | + | chr4_1:64317056-64317075 | None:intergenic | 35.0% |
| CTACTGAGTTCATACATGAA+GGG | + | chr4_1:64317066-64317085 | None:intergenic | 35.0% | |
| ACTACTGAGTTCATACATGA+AGG | + | chr4_1:64317067-64317086 | None:intergenic | 35.0% | |
| TCATGTATGAACTCAGTAGT+AGG | - | chr4_1:64317067-64317086 | Msa0563870:intron | 35.0% | |
| TGGGTAAGCCTATATATATG+TGG | - | chr4_1:64317159-64317178 | Msa0563870:intron | 35.0% | |
| ! | ATAGCAAAATGTCTTTGGAG+AGG | + | chr4_1:64317248-64317267 | None:intergenic | 35.0% |
| ! | TTTTGTATAGGCCTATTTGC+AGG | - | chr4_1:64317294-64317313 | Msa0563870:intron | 35.0% |
| !!! | AGGCATCGACAATTTTGATA+AGG | - | chr4_1:64317355-64317374 | Msa0563870:intron | 35.0% |
| GCATCAAAGTATATCCCAAA+AGG | - | chr4_1:64317389-64317408 | Msa0563870:intron | 35.0% | |
| TCAAAGTATATCCCAAAAGG+TGG | - | chr4_1:64317392-64317411 | Msa0563870:intron | 35.0% | |
| !! | CTAAAGAAAGATGGATTGAG+AGG | - | chr4_1:64317428-64317447 | Msa0563870:intron | 35.0% |
| GTTTGGAAATGACACATTAC+TGG | - | chr4_1:64317484-64317503 | Msa0563870:intron | 35.0% | |
| AGACTTACCTTAACGTGTTT+AGG | + | chr4_1:64317529-64317548 | None:intergenic | 35.0% | |
| GTGAAGCAACTAATTCTTTC+AGG | + | chr4_1:64317771-64317790 | None:intergenic | 35.0% | |
| !! | TTTTGGGTGTTTCTTGTTGA+AGG | + | chr4_1:64317821-64317840 | None:intergenic | 35.0% |
| CAACAAGAAACACCCAAAAT+CGG | - | chr4_1:64317822-64317841 | Msa0563870:intron | 35.0% | |
| CTGAAAACACAAACGGAATT+GGG | - | chr4_1:64318057-64318076 | Msa0563870:intron | 35.0% | |
| ATGTTACTAAAGGATGCCAA+AGG | + | chr4_1:64318179-64318198 | None:intergenic | 35.0% | |
| TATGAAAAGGATCAGCCATT+TGG | - | chr4_1:64318242-64318261 | Msa0563870:CDS | 35.0% | |
| CAAACTTCTAACTTTCGAAG+GGG | + | chr4_1:64318359-64318378 | None:intergenic | 35.0% | |
| TCGTATTCATGGGAATTGAA+GGG | + | chr4_1:64318392-64318411 | None:intergenic | 35.0% | |
| TTATCACCAACGTTGTTGAT+TGG | - | chr4_1:64318497-64318516 | Msa0563870:CDS | 35.0% | |
| !! | TGATTGGTCTGAAAATCAAC+GGG | - | chr4_1:64318513-64318532 | Msa0563870:CDS | 35.0% |
| TGAAAATCAACGGGACAATT+AGG | - | chr4_1:64318522-64318541 | Msa0563870:CDS | 35.0% | |
| GATAAGTTCGCCAAATAAGA+TGG | - | chr4_1:64318561-64318580 | Msa0563870:CDS | 35.0% | |
| TGGGTTAAAGCCATCTTATT+TGG | + | chr4_1:64318574-64318593 | None:intergenic | 35.0% | |
| ACTGCATTATAGATGCTTGG+TGG | - | chr4_1:64314946-64314965 | Msa0563870:three_prime_UTR | 40.0% | |
| GATTCAACTTTCAAGACTCG+TGG | - | chr4_1:64314968-64314987 | Msa0563870:three_prime_UTR | 40.0% | |
| ! | AAGGGAGTGTAACTAGTAGA+AGG | + | chr4_1:64315045-64315064 | None:intergenic | 40.0% |
| ! | TCCAATACTCCTTTGAGAAC+CGG | + | chr4_1:64315211-64315230 | None:intergenic | 40.0% |
| ATAAAGCTGACCAAGAGAGA+AGG | - | chr4_1:64315260-64315279 | Msa0563870:three_prime_UTR | 40.0% | |
| GATAAGCTAAACACTACTGC+AGG | - | chr4_1:64315355-64315374 | Msa0563870:CDS | 40.0% | |
| TTAACTACACCTGCATCTCT+TGG | + | chr4_1:64315409-64315428 | None:intergenic | 40.0% | |
| TGGGGCTATTATATTAGGGA+AGG | - | chr4_1:64315444-64315463 | Msa0563870:CDS | 40.0% | |
| TGGTCACATTACAGGTCTAA+TGG | - | chr4_1:64315481-64315500 | Msa0563870:CDS | 40.0% | |
| CTAAAAAGTAGGCCTATGAC+AGG | + | chr4_1:64315974-64315993 | None:intergenic | 40.0% | |
| !!! | CTGTCATAGGCCTACTTTTT+AGG | - | chr4_1:64315972-64315991 | Msa0563870:CDS | 40.0% |
| CAGACTCAGACCTAAAAAGT+AGG | + | chr4_1:64315985-64316004 | None:intergenic | 40.0% | |
| !!! | CTACTTTTTAGGTCTGAGTC+TGG | - | chr4_1:64315983-64316002 | Msa0563870:CDS | 40.0% |
| ! | TCTGGCCTTCTAAAAGTCTA+CGG | - | chr4_1:64316001-64316020 | Msa0563870:CDS | 40.0% |
| TGTTGAATGACCATTTGGCA+GGG | + | chr4_1:64316298-64316317 | None:intergenic | 40.0% | |
| ATGTTGAATGACCATTTGGC+AGG | + | chr4_1:64316299-64316318 | None:intergenic | 40.0% | |
| TGCCAAATGGTCATTCAACA+TGG | - | chr4_1:64316298-64316317 | Msa0563870:CDS | 40.0% | |
| ! | TCTTGGAACCAAGCCAATTT+TGG | - | chr4_1:64316329-64316348 | Msa0563870:CDS | 40.0% |
| !! | AGCTTAAGAGGCTTTTTGAG+AGG | - | chr4_1:64316516-64316535 | Msa0563870:intron | 40.0% |
| ATCTCCGCTGAACACATTAA+TGG | - | chr4_1:64316703-64316722 | Msa0563870:CDS | 40.0% | |
| CTCACCATTAATGTGTTCAG+CGG | + | chr4_1:64316710-64316729 | None:intergenic | 40.0% | |
| GCTGAACACATTAATGGTGA+GGG | - | chr4_1:64316709-64316728 | Msa0563870:CDS | 40.0% | |
| CTGAACACATTAATGGTGAG+GGG | - | chr4_1:64316710-64316729 | Msa0563870:CDS | 40.0% | |
| ! | CACCTAAGAAGAGATTAGTC+TGG | - | chr4_1:64316753-64316772 | Msa0563870:intron | 40.0% |
| TAGTCTGGATATCAGTCCAA+TGG | - | chr4_1:64316768-64316787 | Msa0563870:intron | 40.0% | |
| !!! | CACTCACTTTTTTGGTTGGA+AGG | + | chr4_1:64316820-64316839 | None:intergenic | 40.0% |
| TGTGCAGAATCCATACACAT+TGG | - | chr4_1:64316943-64316962 | Msa0563870:intron | 40.0% | |
| CAAGGATCATCCAATGTGTA+TGG | + | chr4_1:64316956-64316975 | None:intergenic | 40.0% | |
| TACACATTGGATGATCCTTG+TGG | - | chr4_1:64316956-64316975 | Msa0563870:intron | 40.0% | |
| TTTGCTGCTACTGATATTGC+TGG | + | chr4_1:64316995-64317014 | None:intergenic | 40.0% | |
| ! | AATTTGGTGACTGTGTCACT+TGG | - | chr4_1:64317013-64317032 | Msa0563870:intron | 40.0% |
| AGTAGTAGGCATCAAACCAA+CGG | - | chr4_1:64317081-64317100 | Msa0563870:intron | 40.0% | |
| TCAGATACAGTCCTGCAAAT+AGG | + | chr4_1:64317308-64317327 | None:intergenic | 40.0% | |
| TACGTTCTTGAAACCATAGC+AGG | - | chr4_1:64317335-64317354 | Msa0563870:intron | 40.0% | |
| AAAATTGTCGATGCCTGCTA+TGG | + | chr4_1:64317351-64317370 | None:intergenic | 40.0% | |
| ! | ATTGAGCATAGCCACCTTTT+GGG | + | chr4_1:64317406-64317425 | None:intergenic | 40.0% |
| ! | AATTGAGCATAGCCACCTTT+TGG | + | chr4_1:64317407-64317426 | None:intergenic | 40.0% |
| TGGATTGAGAGGAAAGAGAT+TGG | - | chr4_1:64317439-64317458 | Msa0563870:intron | 40.0% | |
| GGATTGAGAGGAAAGAGATT+GGG | - | chr4_1:64317440-64317459 | Msa0563870:intron | 40.0% | |
| AGCTACACCTAAACACGTTA+AGG | - | chr4_1:64317519-64317538 | Msa0563870:intron | 40.0% | |
| TTCTTCAAAATCAGGCGAAG+AGG | - | chr4_1:64317637-64317656 | Msa0563870:intron | 40.0% | |
| TCGTGATCAATGTTCATAGC+TGG | + | chr4_1:64317969-64317988 | None:intergenic | 40.0% | |
| TCGTAGGAGAAACTTGAGTA+TGG | - | chr4_1:64318014-64318033 | Msa0563870:intron | 40.0% | |
| GCTGAAAACACAAACGGAAT+TGG | - | chr4_1:64318056-64318075 | Msa0563870:intron | 40.0% | |
| TGATGCTGTGGTAATACCTT+TGG | - | chr4_1:64318160-64318179 | Msa0563870:CDS | 40.0% | |
| AGTAACATACTTGCCATTGG+AGG | - | chr4_1:64318191-64318210 | Msa0563870:CDS | 40.0% | |
| TGTTCCAGCAGGATATGAAA+AGG | - | chr4_1:64318229-64318248 | Msa0563870:CDS | 40.0% | |
| ! | TGATCCTTTTCATATCCTGC+TGG | + | chr4_1:64318236-64318255 | None:intergenic | 40.0% |
| ! | CAGCCATTTGGAATTTGCTT+CGG | - | chr4_1:64318254-64318273 | Msa0563870:CDS | 40.0% |
| ATTTGCTTCGGAGGTTTGAA+AGG | - | chr4_1:64318266-64318285 | Msa0563870:CDS | 40.0% | |
| TTTGCTTCGGAGGTTTGAAA+GGG | - | chr4_1:64318267-64318286 | Msa0563870:CDS | 40.0% | |
| GATCAAAGTTGCTTGCTCAA+AGG | + | chr4_1:64318324-64318343 | None:intergenic | 40.0% | |
| TATTCATGGGAATTGAAGGG+GGG | + | chr4_1:64318389-64318408 | None:intergenic | 40.0% | |
| GTATTCATGGGAATTGAAGG+GGG | + | chr4_1:64318390-64318409 | None:intergenic | 40.0% | |
| CGTATTCATGGGAATTGAAG+GGG | + | chr4_1:64318391-64318410 | None:intergenic | 40.0% | |
| GTCGTATTCATGGGAATTGA+AGG | + | chr4_1:64318393-64318412 | None:intergenic | 40.0% | |
| GAAGAAGCAGTCGTATTCAT+GGG | + | chr4_1:64318402-64318421 | None:intergenic | 40.0% | |
| AGAAGAAGCAGTCGTATTCA+TGG | + | chr4_1:64318403-64318422 | None:intergenic | 40.0% | |
| TTCAGACCAATCAACAACGT+TGG | + | chr4_1:64318506-64318525 | None:intergenic | 40.0% | |
| !!! | ATAATCGTTTTCAGGTTGGG+CGG | - | chr4_1:64318679-64318698 | Msa0563870:CDS | 40.0% |
| TTTCAAGACTCGTGGAGTCA+TGG | - | chr4_1:64314976-64314995 | Msa0563870:three_prime_UTR | 45.0% | |
| TCAACAACAACCTTGGCTAG+TGG | - | chr4_1:64315073-64315092 | Msa0563870:three_prime_UTR | 45.0% | |
| GATTGAGAATCCACTAGCCA+AGG | + | chr4_1:64315086-64315105 | None:intergenic | 45.0% | |
| !! | GGCTAGTGGATTCTCAATCA+AGG | - | chr4_1:64315087-64315106 | Msa0563870:three_prime_UTR | 45.0% |
| ! | GCTTTCTTTGGAAGGCAAGT+TGG | + | chr4_1:64315132-64315151 | None:intergenic | 45.0% |
| ATCCAAAACCCGGTTCTCAA+AGG | - | chr4_1:64315199-64315218 | Msa0563870:three_prime_UTR | 45.0% | |
| ! | CCAATACTCCTTTGAGAACC+GGG | + | chr4_1:64315210-64315229 | None:intergenic | 45.0% |
| !! | GGTTCTCAAAGGAGTATTGG+AGG | - | chr4_1:64315210-64315229 | Msa0563870:three_prime_UTR | 45.0% |
| TCTGCTTGTGCTAATGCATC+TGG | + | chr4_1:64315241-64315260 | None:intergenic | 45.0% | |
| TGAAAGAGAACCAGGTGCTT+TGG | + | chr4_1:64315287-64315306 | None:intergenic | 45.0% | |
| ! | AAGCACCTGGTTCTCTTTCA+AGG | - | chr4_1:64315287-64315306 | Msa0563870:exon | 45.0% |
| TGCAACCTTGAAAGAGAACC+AGG | + | chr4_1:64315295-64315314 | None:intergenic | 45.0% | |
| GGTTCTCTTTCAAGGTTGCA+TGG | - | chr4_1:64315295-64315314 | Msa0563870:exon | 45.0% | |
| ! | GCAGGTTCTTTTGCATTGCT+TGG | - | chr4_1:64315373-64315392 | Msa0563870:CDS | 45.0% |
| ATGTGACCACTCACTCAAAG+TGG | + | chr4_1:64315470-64315489 | None:intergenic | 45.0% | |
| TGAGTGAGTGGTCACATTAC+AGG | - | chr4_1:64315473-64315492 | Msa0563870:CDS | 45.0% | |
| !!! | ACTCTTTTTTGGGACAGCTC+TGG | + | chr4_1:64315702-64315721 | None:intergenic | 45.0% |
| AGCTGTCCCAAAAAAGAGTG+AGG | - | chr4_1:64315703-64315722 | Msa0563870:intron | 45.0% | |
| GCTGTCCCAAAAAAGAGTGA+GGG | - | chr4_1:64315704-64315723 | Msa0563870:intron | 45.0% | |
| ACAAACTGAACCACACCCAT+TGG | + | chr4_1:64315842-64315861 | None:intergenic | 45.0% | |
| TAACCACTGAGCTTATCGGT+AGG | - | chr4_1:64315862-64315881 | Msa0563870:CDS | 45.0% | |
| AACCACTGAGCTTATCGGTA+GGG | - | chr4_1:64315863-64315882 | Msa0563870:CDS | 45.0% | |
| TTATCGGTAGGGATGGGAAT+AGG | - | chr4_1:64315874-64315893 | Msa0563870:CDS | 45.0% | |
| AAATATGGCAGGCCAGACTT+AGG | + | chr4_1:64315925-64315944 | None:intergenic | 45.0% | |
| ! | GCAGACCGTAGACTTTTAGA+AGG | + | chr4_1:64316009-64316028 | None:intergenic | 45.0% |
| ATGAGGAAGTGGGATCTCTT+TGG | - | chr4_1:64316196-64316215 | Msa0563870:CDS | 45.0% | |
| TGAGGAAGTGGGATCTCTTT+GGG | - | chr4_1:64316197-64316216 | Msa0563870:CDS | 45.0% | |
| ATAGAAAGAGACCCAAGTCC+TGG | - | chr4_1:64316269-64316288 | Msa0563870:CDS | 45.0% | |
| GCCTCTTAAGCTTATTAGGC+CGG | + | chr4_1:64316508-64316527 | None:intergenic | 45.0% | |
| CGCTGAACACATTAATGGTG+AGG | - | chr4_1:64316708-64316727 | Msa0563870:CDS | 45.0% | |
| ! | TTCCACTAGCTTCAGTCCAT+TGG | + | chr4_1:64316787-64316806 | None:intergenic | 45.0% |
| GATCCTTGTGGATCAAGTAG+TGG | - | chr4_1:64316968-64316987 | Msa0563870:intron | 45.0% | |
| ! | TCACTTGGTACTGAAACCGA+TGG | - | chr4_1:64317028-64317047 | Msa0563870:intron | 45.0% |
| AGGGCATAAAATGGAGCCAT+CGG | + | chr4_1:64317047-64317066 | None:intergenic | 45.0% | |
| GTGTAGTTCCAATTAGCCCA+AGG | - | chr4_1:64317125-64317144 | Msa0563870:intron | 45.0% | |
| TGCTTCACCAGTGAAAAGCT+TGG | - | chr4_1:64317783-64317802 | Msa0563870:intron | 45.0% | |
| ! | ACATCTGCCAAGCTTTTCAC+TGG | + | chr4_1:64317793-64317812 | None:intergenic | 45.0% |
| CTTACAGTCGTGAAGCAAAC+TGG | + | chr4_1:64317887-64317906 | None:intergenic | 45.0% | |
| CTGCAGGCTGAAAACACAAA+CGG | - | chr4_1:64318050-64318069 | Msa0563870:intron | 45.0% | |
| CCTCCGAAGCAAATTCCAAA+TGG | + | chr4_1:64318260-64318279 | None:intergenic | 45.0% | |
| ! | CCATTTGGAATTTGCTTCGG+AGG | - | chr4_1:64318257-64318276 | Msa0563870:CDS | 45.0% |
| ACTTCTAACTTTCGAAGGGG+AGG | + | chr4_1:64318356-64318375 | None:intergenic | 45.0% | |
| ATTCATGGGAATTGAAGGGG+GGG | + | chr4_1:64318388-64318407 | None:intergenic | 45.0% | |
| AAGAGAGCTAGCACATGCTG+AGG | + | chr4_1:64315002-64315021 | None:intergenic | 50.0% | |
| !! | CTCCTTTGAGAACCGGGTTT+TGG | + | chr4_1:64315204-64315223 | None:intergenic | 50.0% |
| ! | CCCGGTTCTCAAAGGAGTAT+TGG | - | chr4_1:64315207-64315226 | Msa0563870:three_prime_UTR | 50.0% |
| GTGCTTTGGTCCTTCTCTCT+TGG | + | chr4_1:64315273-64315292 | None:intergenic | 50.0% | |
| TCAGTAGTGCCAAGAGATGC+AGG | - | chr4_1:64315397-64315416 | Msa0563870:CDS | 50.0% | |
| AGGTCTAATGGAGCTCCTAG+CGG | - | chr4_1:64315493-64315512 | Msa0563870:CDS | 50.0% | |
| TGCTAGAGGTGGACAAGGAA+AGG | - | chr4_1:64315522-64315541 | Msa0563870:CDS | 50.0% | |
| ATCCCTACCGATAAGCTCAG+TGG | + | chr4_1:64315868-64315887 | None:intergenic | 50.0% | |
| ACTGAGCTTATCGGTAGGGA+TGG | - | chr4_1:64315867-64315886 | Msa0563870:CDS | 50.0% | |
| CTGAGCTTATCGGTAGGGAT+GGG | - | chr4_1:64315868-64315887 | Msa0563870:CDS | 50.0% | |
| GCCGGCCTAATAAGCTTAAG+AGG | - | chr4_1:64316504-64316523 | Msa0563870:intron | 50.0% | |
| AACTTAAAAGGCCAGGCCAC+AGG | + | chr4_1:64316542-64316561 | None:intergenic | 50.0% | |
| !! | GTCCAATGGACTGAAGCTAG+TGG | - | chr4_1:64316782-64316801 | Msa0563870:intron | 50.0% |
| GGTCCACTACTTGATCCACA+AGG | + | chr4_1:64316974-64316993 | None:intergenic | 50.0% | |
| GTAGGCATCAAACCAACGGT+TGG | - | chr4_1:64317085-64317104 | Msa0563870:intron | 50.0% | |
| CTACTAGTGAGACCAACCGT+TGG | + | chr4_1:64317100-64317119 | None:intergenic | 50.0% | |
| ! | GTTGGTCTCACTAGTAGAGC+AGG | - | chr4_1:64317103-64317122 | Msa0563870:intron | 50.0% |
| GTGTCTTGCCTTGGGCTAAT+TGG | + | chr4_1:64317136-64317155 | None:intergenic | 50.0% | |
| ACCCAACTGTGTCTTGCCTT+GGG | + | chr4_1:64317144-64317163 | None:intergenic | 50.0% | |
| TACCCAACTGTGTCTTGCCT+TGG | + | chr4_1:64317145-64317164 | None:intergenic | 50.0% | |
| GAGAGGAAAGAGATTGGGAG+TGG | - | chr4_1:64317445-64317464 | Msa0563870:intron | 50.0% | |
| CTTGCCATTGGAGGTTATCC+TGG | - | chr4_1:64318200-64318219 | Msa0563870:CDS | 50.0% | |
| CACTCCAGGATAACCTCCAA+TGG | + | chr4_1:64318207-64318226 | None:intergenic | 50.0% | |
| TCTAACTTTCGAAGGGGAGG+TGG | + | chr4_1:64318353-64318372 | None:intergenic | 50.0% | |
| AGCTCACCAGTACCAACAGT+TGG | - | chr4_1:64318717-64318736 | Msa0563870:CDS | 50.0% | |
| ! | GAGAGAAGGACCAAAGCACC+TGG | - | chr4_1:64315274-64315293 | Msa0563870:three_prime_UTR | 55.0% |
| ! | GGAAGGCCACTTTGAGTGAG+TGG | - | chr4_1:64315461-64315480 | Msa0563870:CDS | 55.0% |
| CTAATGGAGCTCCTAGCGGT+TGG | - | chr4_1:64315497-64315516 | Msa0563870:CDS | 55.0% | |
| ! | TGGAGTGCTAGAGGTGGACA+AGG | - | chr4_1:64315517-64315536 | Msa0563870:CDS | 55.0% |
| GGTAGGGATGGGAATAGGCT+AGG | - | chr4_1:64315879-64315898 | Msa0563870:CDS | 55.0% | |
| GACTTAGGCCTTGCAAAGCC+TGG | + | chr4_1:64315910-64315929 | None:intergenic | 55.0% | |
| GGCTTTGCAAGGCCTAAGTC+TGG | - | chr4_1:64315910-64315929 | Msa0563870:CDS | 55.0% | |
| TAAAGCCTAAGCCTGGCCTG+CGG | - | chr4_1:64315948-64315967 | Msa0563870:CDS | 55.0% | |
| TGGCAGGGATACCAGGACTT+GGG | + | chr4_1:64316283-64316302 | None:intergenic | 55.0% | |
| TTGGCAGGGATACCAGGACT+TGG | + | chr4_1:64316284-64316303 | None:intergenic | 55.0% | |
| GTCCTGGTATCCCTGCCAAA+TGG | - | chr4_1:64316285-64316304 | Msa0563870:CDS | 55.0% | |
| GACCATTTGGCAGGGATACC+AGG | + | chr4_1:64316290-64316309 | None:intergenic | 55.0% | |
| !! | GAGGCTTTTTGAGAGGCCTG+TGG | - | chr4_1:64316523-64316542 | Msa0563870:CDS | 55.0% |
| !! | TTTTTGAGAGGCCTGTGGCC+TGG | - | chr4_1:64316528-64316547 | Msa0563870:CDS | 55.0% |
| GAAAAAAGTCTGGCCTGGCC+TGG | - | chr4_1:64316601-64316620 | Msa0563870:CDS | 55.0% | |
| ACAAGGGATGGGAATAGGCC+AGG | + | chr4_1:64316664-64316683 | None:intergenic | 55.0% | |
| GGCCTATTCCCATCCCTTGT+CGG | - | chr4_1:64316664-64316683 | Msa0563870:CDS | 55.0% | |
| GCCTATTCCCATCCCTTGTC+GGG | - | chr4_1:64316665-64316684 | Msa0563870:CDS | 55.0% | |
| CCTATTCCCATCCCTTGTCG+GGG | - | chr4_1:64316666-64316685 | Msa0563870:CDS | 55.0% | |
| GAAGTTCCCCGACAAGGGAT+GGG | + | chr4_1:64316675-64316694 | None:intergenic | 55.0% | |
| ACTGCGAAGTTCCCCGACAA+GGG | + | chr4_1:64316680-64316699 | None:intergenic | 55.0% | |
| AACTGCGAAGTTCCCCGACA+AGG | + | chr4_1:64316681-64316700 | None:intergenic | 55.0% | |
| AGCCCAAGGCAAGACACAGT+TGG | - | chr4_1:64317139-64317158 | Msa0563870:intron | 55.0% | |
| GCCCAAGGCAAGACACAGTT+GGG | - | chr4_1:64317140-64317159 | Msa0563870:intron | 55.0% | |
| TGGCCAAGATCTCATGCTGC+AGG | - | chr4_1:64318034-64318053 | Msa0563870:intron | 55.0% | |
| CAGCCTGCAGCATGAGATCT+TGG | + | chr4_1:64318040-64318059 | None:intergenic | 55.0% | |
| CCTGCTGGAACAATCACTCC+AGG | + | chr4_1:64318221-64318240 | None:intergenic | 55.0% | |
| CCTGGAGTGATTGTTCCAGC+AGG | - | chr4_1:64318218-64318237 | Msa0563870:CDS | 55.0% | |
| CCTCTAGCACTCCAACCGCT+AGG | + | chr4_1:64315511-64315530 | None:intergenic | 60.0% | |
| ! | CCTAGCGGTTGGAGTGCTAG+AGG | - | chr4_1:64315508-64315527 | Msa0563870:CDS | 60.0% |
| ! | AGCGGTTGGAGTGCTAGAGG+TGG | - | chr4_1:64315511-64315530 | Msa0563870:CDS | 60.0% |
| GGAATAGGCTAGGCCAAGCC+AGG | - | chr4_1:64315889-64315908 | Msa0563870:CDS | 60.0% | |
| AGGCCAAGCCAGGCTTTGCA+AGG | - | chr4_1:64315899-64315918 | Msa0563870:CDS | 60.0% | |
| AGGCCTTGCAAAGCCTGGCT+TGG | + | chr4_1:64315905-64315924 | None:intergenic | 60.0% | |
| CCCCGACAAGGGATGGGAAT+AGG | + | chr4_1:64316669-64316688 | None:intergenic | 60.0% | |
| CGAAGTTCCCCGACAAGGGA+TGG | + | chr4_1:64316676-64316695 | None:intergenic | 60.0% | |
| GTAGGCCTATGACAGGCCGC+AGG | + | chr4_1:64315967-64315986 | None:intergenic | 65.0% | |
| CCTACGGCCTAGCCTACGAC+AGG | + | chr4_1:64316627-64316646 | None:intergenic | 65.0% | |
| CCTGTCGTAGGCTAGGCCGT+AGG | - | chr4_1:64316624-64316643 | Msa0563870:CDS | 65.0% | |
| ATAGGCCAGGCCGGCCTACA+GGG | + | chr4_1:64316651-64316670 | None:intergenic | 65.0% | |
| AATAGGCCAGGCCGGCCTAC+AGG | + | chr4_1:64316652-64316671 | None:intergenic | 65.0% | |
| GGGATGGGAATAGGCCAGGC+CGG | + | chr4_1:64316660-64316679 | None:intergenic | 65.0% | |
| ACAGGCCGCAGGCCAGGCTT+AGG | + | chr4_1:64315956-64315975 | None:intergenic | 70.0% | |
| CCTATGACAGGCCGCAGGCC+AGG | + | chr4_1:64315962-64315981 | None:intergenic | 70.0% | |
| CCTGGCCTGCGGCCTGTCAT+AGG | - | chr4_1:64315959-64315978 | Msa0563870:CDS | 70.0% | |
| AGCCTACGACAGGCCAGGCC+AGG | + | chr4_1:64316617-64316636 | None:intergenic | 70.0% | |
| GGCCTGGCCTGTCGTAGGCT+AGG | - | chr4_1:64316617-64316636 | Msa0563870:CDS | 70.0% | |
| GGCCTAGCCTACGACAGGCC+AGG | + | chr4_1:64316622-64316641 | None:intergenic | 70.0% | |
| GCTAGGCCGTAGGCCCCTGT+AGG | - | chr4_1:64316634-64316653 | Msa0563870:CDS | 70.0% | |
| TAGGCCAGGCCGGCCTACAG+GGG | + | chr4_1:64316650-64316669 | None:intergenic | 70.0% | |
| GGCCTGGCCTGGCCTGTCGT+AGG | - | chr4_1:64316612-64316631 | Msa0563870:CDS | 75.0% | |
| GGCCGTAGGCCCCTGTAGGC+CGG | - | chr4_1:64316638-64316657 | Msa0563870:CDS | 75.0% | |
| GGCCGGCCTACAGGGGCCTA+CGG | + | chr4_1:64316643-64316662 | None:intergenic | 75.0% | |
| TAGGCCCCTGTAGGCCGGCC+TGG | - | chr4_1:64316643-64316662 | Msa0563870:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 64314944 | 64318740 | 64314944 | ID=Msa0563870;Name=Msa0563870 |
| chr4_1 | mRNA | 64314944 | 64318740 | 64314944 | ID=Msa0563870-mRNA-1;Parent=Msa0563870;Name=Msa0563870-mRNA-1;_AED=0.39;_eAED=0.39;_QI=0|1|1|1|1|1|5|361|533 |
| chr4_1 | exon | 64314944 | 64315664 | 64314944 | ID=Msa0563870-mRNA-1:exon:20569;Parent=Msa0563870-mRNA-1 |
| chr4_1 | exon | 64315841 | 64316033 | 64315841 | ID=Msa0563870-mRNA-1:exon:20568;Parent=Msa0563870-mRNA-1 |
| chr4_1 | exon | 64316144 | 64316380 | 64316144 | ID=Msa0563870-mRNA-1:exon:20567;Parent=Msa0563870-mRNA-1 |
| chr4_1 | exon | 64316523 | 64316734 | 64316523 | ID=Msa0563870-mRNA-1:exon:20566;Parent=Msa0563870-mRNA-1 |
| chr4_1 | exon | 64318141 | 64318740 | 64318141 | ID=Msa0563870-mRNA-1:exon:20565;Parent=Msa0563870-mRNA-1 |
| chr4_1 | CDS | 64318141 | 64318740 | 64318141 | ID=Msa0563870-mRNA-1:cds;Parent=Msa0563870-mRNA-1 |
| chr4_1 | CDS | 64316523 | 64316734 | 64316523 | ID=Msa0563870-mRNA-1:cds;Parent=Msa0563870-mRNA-1 |
| chr4_1 | CDS | 64316144 | 64316380 | 64316144 | ID=Msa0563870-mRNA-1:cds;Parent=Msa0563870-mRNA-1 |
| chr4_1 | CDS | 64315841 | 64316033 | 64315841 | ID=Msa0563870-mRNA-1:cds;Parent=Msa0563870-mRNA-1 |
| chr4_1 | CDS | 64315305 | 64315664 | 64315305 | ID=Msa0563870-mRNA-1:cds;Parent=Msa0563870-mRNA-1 |
| chr4_1 | three_prime_UTR | 64314944 | 64315304 | 64314944 | ID=Msa0563870-mRNA-1:three_prime_utr;Parent=Msa0563870-mRNA-1 |
| Gene Sequence |
| Protein sequence |
