Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0577480 | XP_013446598.1 | 94.961 | 516 | 25 | 1 | 1 | 516 | 1 | 515 | 0.0 | 991 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0577480 | sp|A0A1P8B760|AMI4G_ARATH | 62.705 | 488 | 168 | 6 | 27 | 509 | 30 | 508 | 0.0 | 573 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0577480 | A0A072U458 | 94.961 | 516 | 25 | 1 | 1 | 516 | 1 | 515 | 0.0 | 991 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000370 | Msa0577480 | 0.819931 | 8.960360e-53 | -8.615850e-47 |
| Msa0036730 | Msa0577480 | 0.819647 | 1.040647e-52 | -8.615850e-47 |
| Msa0045810 | Msa0577480 | 0.811168 | 8.013173e-51 | -8.615850e-47 |
| Msa0046200 | Msa0577480 | 0.805744 | 1.151378e-49 | -8.615850e-47 |
| Msa0139500 | Msa0577480 | 0.812256 | 4.646561e-51 | -8.615850e-47 |
| Msa0183710 | Msa0577480 | 0.804658 | 1.943650e-49 | -8.615850e-47 |
| Msa0387930 | Msa0577480 | 0.802519 | 5.398120e-49 | -8.615850e-47 |
| Msa0437480 | Msa0577480 | 0.811636 | 6.340946e-51 | -8.615850e-47 |
| Msa0440350 | Msa0577480 | 0.822641 | 2.124790e-53 | -8.615850e-47 |
| Msa0354840 | Msa0577480 | 0.821457 | 3.996643e-53 | -8.615850e-47 |
| Msa0549960 | Msa0577480 | 0.804211 | 2.408748e-49 | -8.615850e-47 |
| Msa0563870 | Msa0577480 | 0.979680 | 1.674381e-148 | -8.615850e-47 |
| Msa0577480 | Msa0577790 | 0.976958 | 7.848941e-143 | -8.615850e-47 |
| Msa0577480 | Msa0646010 | 0.802478 | 5.505260e-49 | -8.615850e-47 |
| Msa0577480 | Msa0646430 | 0.810315 | 1.225216e-50 | -8.615850e-47 |
| Msa0577480 | Msa0722890 | 0.821157 | 4.687711e-53 | -8.615850e-47 |
| Msa0577480 | Msa0723090 | 0.810362 | 1.196901e-50 | -8.615850e-47 |
| Msa0577480 | Msa0931020 | 0.821902 | 3.153484e-53 | -8.615850e-47 |
| Msa0577480 | Msa0956350 | 0.800301 | 1.536700e-48 | -8.615850e-47 |
| Msa0577480 | Msa0967780 | 0.808350 | 3.233919e-50 | -8.615850e-47 |
| Msa0577480 | Msa1022420 | 0.803993 | 2.673451e-49 | -8.615850e-47 |
| Msa0577480 | Msa1041060 | 0.804862 | 1.761943e-49 | -8.615850e-47 |
| Msa0577480 | Msa1068940 | 0.804902 | 1.728189e-49 | -8.615850e-47 |
| Msa0577480 | Msa1082410 | 0.814062 | 1.865698e-51 | -8.615850e-47 |
| Msa0577480 | Msa1088320 | 0.804585 | 2.013355e-49 | -8.615850e-47 |
| Msa0577480 | Msa1090280 | 0.824896 | 6.296222e-54 | -8.615850e-47 |
| Msa0577480 | Msa1156710 | 0.800114 | 1.677866e-48 | -8.615850e-47 |
| Msa0577480 | Msa1156720 | 0.807643 | 4.572302e-50 | -8.615850e-47 |
| Msa0577480 | Msa1165460 | 0.803146 | 4.007562e-49 | -8.615850e-47 |
| Msa0577480 | Msa1206920 | 0.814587 | 1.428109e-51 | -8.615850e-47 |
| Msa0577480 | Msa1253520 | 0.806757 | 7.042818e-50 | -8.615850e-47 |
| Msa0577480 | Msa1257200 | 0.818981 | 1.475678e-52 | -8.615850e-47 |
| Msa0577480 | Msa1261160 | 0.816819 | 4.543326e-52 | -8.615850e-47 |
| Msa0577480 | Msa1306820 | 0.986880 | 2.733066e-168 | -8.615850e-47 |
| Msa0577480 | Msa1323070 | 0.808415 | 3.132340e-50 | -8.615850e-47 |
| Msa0577480 | Msa1381030 | 0.811955 | 5.402628e-51 | -8.615850e-47 |
| Msa0577480 | Msa1437980 | 0.818596 | 1.804958e-52 | -8.615850e-47 |
| Msa0577480 | Msa1440430 | 0.809175 | 2.154435e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0577480 | MtrunA17_Chr8g0377691 | 94.961 | 516 | 25 | 1 | 1 | 516 | 1 | 515 | 0.0 | 991 |
| Msa0577480 | MtrunA17_Chr8g0377701 | 91.245 | 514 | 45 | 0 | 1 | 514 | 1 | 514 | 0.0 | 949 |
| Msa0577480 | MtrunA17_Chr8g0377651 | 84.913 | 517 | 73 | 2 | 1 | 516 | 3 | 515 | 0.0 | 882 |
| Msa0577480 | MtrunA17_Chr8g0377681 | 83.789 | 512 | 81 | 2 | 6 | 516 | 3 | 513 | 0.0 | 868 |
| Msa0577480 | MtrunA17_Chr8g0377641 | 83.398 | 518 | 79 | 3 | 1 | 516 | 1 | 513 | 0.0 | 867 |
| Msa0577480 | MtrunA17_Chr4g0037521 | 59.524 | 504 | 189 | 9 | 16 | 509 | 9 | 507 | 0.0 | 565 |
| Msa0577480 | MtrunA17_Chr4g0037491 | 57.049 | 305 | 117 | 7 | 206 | 500 | 1 | 301 | 1.50e-112 | 335 |
| Msa0577480 | MtrunA17_Chr8g0377661 | 87.179 | 78 | 10 | 0 | 439 | 516 | 1 | 78 | 8.08e-40 | 139 |
| Msa0577480 | MtrunA17_Chr8g0385461 | 33.600 | 250 | 149 | 7 | 41 | 288 | 162 | 396 | 1.92e-30 | 125 |
| Msa0577480 | MtrunA17_Chr4g0037501 | 64.894 | 94 | 31 | 2 | 106 | 197 | 2 | 95 | 4.50e-30 | 113 |
| Msa0577480 | MtrunA17_Chr3g0097801 | 33.457 | 269 | 168 | 5 | 54 | 318 | 55 | 316 | 2.92e-26 | 112 |
| Msa0577480 | MtrunA17_Chr2g0279961 | 25.761 | 493 | 317 | 16 | 33 | 501 | 121 | 588 | 1.04e-21 | 99.0 |
| Msa0577480 | MtrunA17_Chr3g0130801 | 25.904 | 498 | 314 | 21 | 41 | 516 | 200 | 664 | 1.10e-17 | 86.3 |
| Msa0577480 | MtrunA17_Chr8g0384851 | 23.047 | 512 | 330 | 17 | 22 | 504 | 117 | 593 | 2.63e-13 | 72.4 |
| Msa0577480 | MtrunA17_Chr1g0191741 | 39.496 | 119 | 66 | 3 | 141 | 258 | 63 | 176 | 3.30e-13 | 71.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0577480 | AT4G34880.2 | 62.705 | 488 | 168 | 6 | 27 | 509 | 30 | 508 | 0.0 | 573 |
| Msa0577480 | AT4G34880.1 | 55.852 | 487 | 157 | 7 | 27 | 509 | 30 | 462 | 7.71e-178 | 508 |
| Msa0577480 | AT5G07360.1 | 33.469 | 245 | 148 | 7 | 41 | 282 | 204 | 436 | 2.76e-28 | 119 |
| Msa0577480 | AT5G07360.3 | 33.469 | 245 | 148 | 7 | 41 | 282 | 204 | 436 | 2.76e-28 | 119 |
| Msa0577480 | AT3G25660.1 | 33.673 | 294 | 176 | 8 | 53 | 339 | 57 | 338 | 2.92e-25 | 109 |
| Msa0577480 | AT5G07360.2 | 33.061 | 245 | 142 | 8 | 41 | 282 | 204 | 429 | 3.57e-25 | 110 |
| Msa0577480 | AT5G64440.1 | 27.734 | 256 | 169 | 5 | 36 | 284 | 125 | 371 | 2.34e-17 | 85.5 |
| Msa0577480 | AT1G08980.1 | 40.336 | 119 | 65 | 3 | 141 | 258 | 64 | 177 | 7.24e-14 | 73.9 |
Find 146 sgRNAs with CRISPR-Local
Find 281 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACAATATACTCACCGATTT+TGG | 0.052247 | 4_1:-81846137 | None:intergenic |
| AGTCAATATCTGTTACATTT+TGG | 0.120231 | 4_1:-81846893 | None:intergenic |
| GTTGCATGGAATACCTATTT+TGG | 0.183488 | 4_1:+81843782 | Msa0577480:CDS |
| AAAGCTGGGGCTATTATATT+AGG | 0.207407 | 4_1:+81843912 | Msa0577480:CDS |
| GTGAAGCAACTAATTCTTTC+AGG | 0.216627 | 4_1:-81846070 | None:intergenic |
| CTCCTTTGAGAACCGGGTTT+TGG | 0.235272 | 4_1:-81843674 | None:intergenic |
| TGGGTTAAAGCCATCTTATT+TGG | 0.251946 | 4_1:-81846873 | None:intergenic |
| AATATCAGTAGCAGCAAATT+TGG | 0.254182 | 4_1:+81845303 | Msa0577480:CDS |
| GTGTCTTGCCTTGGGCTAAT+TGG | 0.289799 | 4_1:-81845439 | None:intergenic |
| TGAAAATCAACGGGACAATT+AGG | 0.295722 | 4_1:+81846824 | Msa0577480:three_prime_UTR |
| TGAGTGAGTGGTCACATTAC+AGG | 0.307159 | 4_1:+81843946 | Msa0577480:CDS |
| AATTGAGCATAGCCACCTTT+TGG | 0.307622 | 4_1:-81845710 | None:intergenic |
| ATGACAAGATTGTCACATAA+TGG | 0.309835 | 4_1:+81846409 | Msa0577480:CDS |
| TTGATGTTAACTGCTTTCTT+TGG | 0.312414 | 4_1:-81843614 | None:intergenic |
| TCTGCTTGTGCTAATGCATC+TGG | 0.313056 | 4_1:-81843711 | None:intergenic |
| ATGTTATCCTTAACCAAAAT+AGG | 0.317243 | 4_1:-81843795 | None:intergenic |
| CAGCCTGCAGCATGAGATCT+TGG | 0.321727 | 4_1:-81846339 | None:intergenic |
| GTTTGGAAATGACACATTAC+TGG | 0.325517 | 4_1:+81845790 | Msa0577480:CDS |
| TACCCAACTGTGTCTTGCCT+TGG | 0.328875 | 4_1:-81845448 | None:intergenic |
| CATACATGAAGGGCATAAAA+TGG | 0.329473 | 4_1:-81845359 | None:intergenic |
| GCTGAAAACACAAACGGAAT+TGG | 0.344147 | 4_1:+81846358 | Msa0577480:CDS |
| TGGATTGAGAGGAAAGAGAT+TGG | 0.350640 | 4_1:+81845745 | Msa0577480:CDS |
| GTGCTTTGGTCCTTCTCTCT+TGG | 0.365774 | 4_1:-81843743 | None:intergenic |
| AGACTTACCTTAACGTGTTT+AGG | 0.366426 | 4_1:-81845832 | None:intergenic |
| TCCAATACTCCTTTGAGAAC+CGG | 0.372772 | 4_1:-81843681 | None:intergenic |
| AAGCACCTGGTTCTCTTTCA+AGG | 0.377380 | 4_1:+81843760 | Msa0577480:CDS |
| ACCCAACTGTGTCTTGCCTT+GGG | 0.380722 | 4_1:-81845447 | None:intergenic |
| GTAAGAATATACTACGAGTT+TGG | 0.386299 | 4_1:+81845773 | Msa0577480:CDS |
| TGACAAGATTGTCACATAAT+GGG | 0.387697 | 4_1:+81846410 | Msa0577480:CDS |
| CTTGCCATTGGAGGTTATCC+TGG | 0.389584 | 4_1:+81846502 | Msa0577480:CDS |
| TCAGATACAGTCCTGCAAAT+AGG | 0.391218 | 4_1:-81845611 | None:intergenic |
| TGAAAGAGAACCAGGTGCTT+TGG | 0.397701 | 4_1:-81843757 | None:intergenic |
| TTTGCTGCTACTGATATTGC+TGG | 0.399338 | 4_1:-81845298 | None:intergenic |
| GTTGTTGTTGATAGCATAGA+AGG | 0.400557 | 4_1:-81843534 | None:intergenic |
| TTCTTTCAGGTACTTATTCA+AGG | 0.401325 | 4_1:-81846057 | None:intergenic |
| CAGCCATTTGGAATTTGCTT+CGG | 0.404070 | 4_1:+81846556 | Msa0577480:CDS |
| AAGGGAGTGTAACTAGTAGA+AGG | 0.404094 | 4_1:-81843515 | None:intergenic |
| TAAGCAATTTCAATCAACTT+TGG | 0.417086 | 4_1:-81846598 | None:intergenic |
| AGCTACACCTAAACACGTTA+AGG | 0.417453 | 4_1:+81845825 | Msa0577480:CDS |
| CTGAAAACACAAACGGAATT+GGG | 0.420174 | 4_1:+81846359 | Msa0577480:CDS |
| TGGTCACATTACAGGTCTAA+TGG | 0.420524 | 4_1:+81843954 | Msa0577480:CDS |
| GCTCAATTTCTAAAGAAAGA+TGG | 0.421932 | 4_1:+81845725 | Msa0577480:CDS |
| TATGAAAAGGATCAGCCATT+TGG | 0.422331 | 4_1:+81846544 | Msa0577480:CDS |
| CCCGGTTCTCAAAGGAGTAT+TGG | 0.431167 | 4_1:+81843680 | Msa0577480:CDS |
| GTTAACAAGTTAAGGAAAGC+TGG | 0.436209 | 4_1:+81843897 | Msa0577480:CDS |
| CAAGGATCATCCAATGTGTA+TGG | 0.439013 | 4_1:-81845259 | None:intergenic |
| CAACAAGAAACGCCCAAAAT+CGG | 0.439524 | 4_1:+81846124 | Msa0577480:CDS |
| AAGCTGGGGCTATTATATTA+GGG | 0.441388 | 4_1:+81843913 | Msa0577480:CDS |
| GCTTTCTTTGGAAGGCAAGT+TGG | 0.441871 | 4_1:-81843602 | None:intergenic |
| CAGGTGTAGTTAACAAGTTA+AGG | 0.444024 | 4_1:+81843889 | Msa0577480:CDS |
| TGATGCTGTGGTAATACCTT+TGG | 0.445327 | 4_1:+81846462 | Msa0577480:CDS |
| TCGTAGGAGAAACTTGAGTA+TGG | 0.447769 | 4_1:+81846316 | Msa0577480:intron |
| TTATCACCAACGTTGTTGAT+TGG | 0.450202 | 4_1:+81846799 | Msa0577480:three_prime_UTR |
| AGAAGAAGCAGTCGTATTCA+TGG | 0.453916 | 4_1:-81846702 | None:intergenic |
| TTTAGTAACATACTTGCCAT+TGG | 0.461482 | 4_1:+81846490 | Msa0577480:CDS |
| CCAATACTCCTTTGAGAACC+GGG | 0.467786 | 4_1:-81843680 | None:intergenic |
| TTTAAGCCAACTGTTGGTAC+TGG | 0.469071 | 4_1:-81847025 | None:intergenic |
| GCCCAAGGCAAGACACAGTT+GGG | 0.473558 | 4_1:+81845446 | Msa0577480:CDS |
| TTAACTACACCTGCATCTCT+TGG | 0.477941 | 4_1:-81843879 | None:intergenic |
| GTCGTATTCATGGGAATTGA+AGG | 0.479685 | 4_1:-81846692 | None:intergenic |
| GAGAGGAAAGAGATTGGGAG+TGG | 0.480046 | 4_1:+81845751 | Msa0577480:CDS |
| TCATGTATGAACTCAGTAGT+AGG | 0.484329 | 4_1:+81845373 | Msa0577480:CDS |
| GGTTCTCTTTCAAGGTTGCA+TGG | 0.486306 | 4_1:+81843768 | Msa0577480:CDS |
| ATCAAACTTCTAACTTTCGA+AGG | 0.491265 | 4_1:-81846660 | None:intergenic |
| TGATTGGTCTGAAAATCAAC+GGG | 0.491915 | 4_1:+81846815 | Msa0577480:three_prime_UTR |
| GGATTGAGAGGAAAGAGATT+GGG | 0.491920 | 4_1:+81845746 | Msa0577480:CDS |
| AATGGCAAGTATGTTACTAA+AGG | 0.492484 | 4_1:-81846488 | None:intergenic |
| CCATTTGGAATTTGCTTCGG+AGG | 0.497867 | 4_1:+81846559 | Msa0577480:CDS |
| TTAACAAGTTAAGGAAAGCT+GGG | 0.500893 | 4_1:+81843898 | Msa0577480:CDS |
| GATAAGTTCGCCAAATAAGA+TGG | 0.505472 | 4_1:+81846863 | Msa0577480:three_prime_UTR |
| ATTTGCTTCGGAGGTTTGAA+AGG | 0.508083 | 4_1:+81846568 | Msa0577480:CDS |
| AAAATTGTCGATGCCTGCTA+TGG | 0.508490 | 4_1:-81845654 | None:intergenic |
| TCAGTAGTGCCAAGAGATGC+AGG | 0.509284 | 4_1:+81843870 | Msa0577480:CDS |
| GCATCAAAGTATATCCCAAA+AGG | 0.517964 | 4_1:+81845695 | Msa0577480:CDS |
| TGTTAACTGCTTTCTTTGGA+AGG | 0.518372 | 4_1:-81843610 | None:intergenic |
| TGCAACCTTGAAAGAGAACC+AGG | 0.523206 | 4_1:-81843765 | None:intergenic |
| TCTAACTTTCGAAGGGGAGG+TGG | 0.524924 | 4_1:-81846652 | None:intergenic |
| CTAAAGAAAGATGGATTGAG+AGG | 0.525250 | 4_1:+81845734 | Msa0577480:CDS |
| AGTAACATACTTGCCATTGG+AGG | 0.525648 | 4_1:+81846493 | Msa0577480:CDS |
| TGGCCAAGATCTCATGCTGC+AGG | 0.534153 | 4_1:+81846336 | Msa0577480:CDS |
| TACGTTCTTGAAACCATAGC+AGG | 0.539094 | 4_1:+81845641 | Msa0577480:CDS |
| TGTTCCAGCAGGATATGAAA+AGG | 0.539625 | 4_1:+81846531 | Msa0577480:CDS |
| CCTCCGAAGCAAATTCCAAA+TGG | 0.542753 | 4_1:-81846559 | None:intergenic |
| GATCAAAGTTGCTTGCTCAA+AGG | 0.544559 | 4_1:-81846623 | None:intergenic |
| TGCTTCACCAGTGAAAAGCT+TGG | 0.546928 | 4_1:+81846085 | Msa0577480:CDS |
| ACTACTGAGTTCATACATGA+AGG | 0.549148 | 4_1:-81845370 | None:intergenic |
| TTTCAAGACTCGTGGAGTCA+TGG | 0.550445 | 4_1:+81843449 | None:intergenic |
| TGCTAGAGGTGGACAAGGAA+AGG | 0.550614 | 4_1:+81843995 | Msa0577480:CDS |
| GATAAGCTAAACACTACTGC+AGG | 0.551568 | 4_1:+81843828 | Msa0577480:CDS |
| TTGTTGTTGATAGCATAGAA+GGG | 0.551701 | 4_1:-81843533 | None:intergenic |
| TCAAACTTCTAACTTTCGAA+GGG | 0.553186 | 4_1:-81846659 | None:intergenic |
| GGCTAGTGGATTCTCAATCA+AGG | 0.555061 | 4_1:+81843560 | Msa0577480:CDS |
| AGCCCAAGGCAAGACACAGT+TGG | 0.555092 | 4_1:+81845445 | Msa0577480:CDS |
| CCTGCTGGAACAATCACTCC+AGG | 0.559268 | 4_1:-81846520 | None:intergenic |
| AGCTCACCAGTACCAACAGT+TGG | 0.559686 | 4_1:+81847019 | Msa0577480:three_prime_UTR |
| CCTGGAGTGATTGTTCCAGC+AGG | 0.563666 | 4_1:+81846520 | Msa0577480:CDS |
| GGAAGGCCACTTTGAGTGAG+TGG | 0.565034 | 4_1:+81843934 | Msa0577480:CDS |
| TTGATTGGTCTGAAAATCAA+CGG | 0.565999 | 4_1:+81846814 | Msa0577480:three_prime_UTR |
| TCAACAACAACCTTGGCTAG+TGG | 0.566924 | 4_1:+81843546 | Msa0577480:CDS |
| GATTCAACTTTCAAGACTCG+TGG | 0.569084 | 4_1:+81843441 | None:intergenic |
| CTAATGGAGCTCCTAGCGGT+TGG | 0.569270 | 4_1:+81843970 | Msa0577480:CDS |
| GTTGGTCTCACTAGTAGAGC+AGG | 0.569449 | 4_1:+81845409 | Msa0577480:CDS |
| CTGCAGGCTGAAAACACAAA+CGG | 0.569958 | 4_1:+81846352 | Msa0577480:CDS |
| ATCCAAAACCCGGTTCTCAA+AGG | 0.571970 | 4_1:+81843672 | Msa0577480:CDS |
| GATTGAGAATCCACTAGCCA+AGG | 0.574276 | 4_1:-81843556 | None:intergenic |
| TTTGCTTCGGAGGTTTGAAA+GGG | 0.576489 | 4_1:+81846569 | Msa0577480:CDS |
| GAAGAAGCAGTCGTATTCAT+GGG | 0.582811 | 4_1:-81846701 | None:intergenic |
| AAGAAATAAACTTGATGCTG+TGG | 0.585547 | 4_1:+81846450 | Msa0577480:CDS |
| CTACTGAGTTCATACATGAA+GGG | 0.587717 | 4_1:-81845369 | None:intergenic |
| GGTTCTCAAAGGAGTATTGG+AGG | 0.589717 | 4_1:+81843683 | Msa0577480:CDS |
| CCAAATTAAAATCCAAAACC+CGG | 0.591273 | 4_1:+81843662 | Msa0577480:CDS |
| CCTAGCGGTTGGAGTGCTAG+AGG | 0.596039 | 4_1:+81843981 | Msa0577480:CDS |
| TATGCTATCAACAACAACCT+TGG | 0.596156 | 4_1:+81843539 | Msa0577480:CDS |
| TTCAGACCAATCAACAACGT+TGG | 0.596436 | 4_1:-81846805 | None:intergenic |
| CCTCTAGCACTCCAACCGCT+AGG | 0.596959 | 4_1:-81843981 | None:intergenic |
| ATGTGACCACTCACTCAAAG+TGG | 0.600148 | 4_1:-81843940 | None:intergenic |
| TCGTATTCATGGGAATTGAA+GGG | 0.601400 | 4_1:-81846691 | None:intergenic |
| GAGAGAAGGACCAAAGCACC+TGG | 0.601549 | 4_1:+81843747 | Msa0577480:CDS |
| CACTCCAGGATAACCTCCAA+TGG | 0.611824 | 4_1:-81846506 | None:intergenic |
| TTCTTCAAAATCAGGCGAAG+AGG | 0.612164 | 4_1:+81845939 | Msa0577480:intron |
| ACTTCTAACTTTCGAAGGGG+AGG | 0.613064 | 4_1:-81846655 | None:intergenic |
| GTATTCATGGGAATTGAAGG+GGG | 0.613740 | 4_1:-81846689 | None:intergenic |
| GATCCTTGTGGATCAAGTAG+TGG | 0.622632 | 4_1:+81845274 | Msa0577480:CDS |
| TGGGGCTATTATATTAGGGA+AGG | 0.623176 | 4_1:+81843917 | Msa0577480:CDS |
| CGTATTCATGGGAATTGAAG+GGG | 0.624730 | 4_1:-81846690 | None:intergenic |
| AGGGCATAAAATGGAGCCAT+CGG | 0.628207 | 4_1:-81845350 | None:intergenic |
| TCAAAGTATATCCCAAAAGG+TGG | 0.630247 | 4_1:+81845698 | Msa0577480:CDS |
| TACACATTGGATGATCCTTG+TGG | 0.640179 | 4_1:+81845262 | Msa0577480:CDS |
| AGCGGTTGGAGTGCTAGAGG+TGG | 0.641094 | 4_1:+81843984 | Msa0577480:CDS |
| ATAAAGCTGACCAAGAGAGA+AGG | 0.642713 | 4_1:+81843733 | Msa0577480:CDS |
| CTACTAGTGAGACCAACCGT+TGG | 0.644995 | 4_1:-81845403 | None:intergenic |
| AATTTGGTGACTGTGTCACT+TGG | 0.645354 | 4_1:+81845319 | Msa0577480:CDS |
| GTAGGCATCAAACCAACGGT+TGG | 0.648249 | 4_1:+81845391 | Msa0577480:CDS |
| AAGAGAGCTAGCACATGCTG+AGG | 0.651382 | 4_1:-81843472 | None:intergenic |
| GTGTAGTTCCAATTAGCCCA+AGG | 0.651600 | 4_1:+81845431 | Msa0577480:CDS |
| TGGAGTGCTAGAGGTGGACA+AGG | 0.653815 | 4_1:+81843990 | Msa0577480:CDS |
| ATTCATGGGAATTGAAGGGG+GGG | 0.660747 | 4_1:-81846687 | None:intergenic |
| TAACAAGTTAAGGAAAGCTG+GGG | 0.661025 | 4_1:+81843899 | Msa0577480:CDS |
| TATTCATGGGAATTGAAGGG+GGG | 0.662700 | 4_1:-81846688 | None:intergenic |
| ATGTTACTAAAGGATGCCAA+AGG | 0.670433 | 4_1:-81846478 | None:intergenic |
| CAAACTTCTAACTTTCGAAG+GGG | 0.687115 | 4_1:-81846658 | None:intergenic |
| AGTAGTAGGCATCAAACCAA+CGG | 0.690720 | 4_1:+81845387 | Msa0577480:CDS |
| TGTGCAGAATCCATACACAT+TGG | 0.705508 | 4_1:+81845249 | Msa0577480:intron |
| AGGTCTAATGGAGCTCCTAG+CGG | 0.708611 | 4_1:+81843966 | Msa0577480:CDS |
| TCACTTGGTACTGAAACCGA+TGG | 0.716676 | 4_1:+81845334 | Msa0577480:CDS |
| GGTCCACTACTTGATCCACA+AGG | 0.733820 | 4_1:-81845277 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAATGTTCATAATATAT+AGG | - | chr4_1:81844522-81844541 | None:intergenic | 10.0% |
| !! | ATTATTCATATTACTTAAAT+AGG | + | chr4_1:81844792-81844811 | Msa0577480:intron | 10.0% |
| !!! | GTGACTATTTTTTTTTATTA+AGG | - | chr4_1:81844280-81844299 | None:intergenic | 15.0% |
| !!! | TTAAGCATATTTAACTTAAA+AGG | - | chr4_1:81844864-81844883 | None:intergenic | 15.0% |
| !!! | ATAAAGTTTTTCATCTTAAG+TGG | + | chr4_1:81844217-81844236 | Msa0577480:intron | 20.0% |
| !! | TCACTAATATAATATCCAAT+GGG | + | chr4_1:81844296-81844315 | Msa0577480:intron | 20.0% |
| !!! | TAATATATAGGCTTTTAAAC+AGG | - | chr4_1:81844510-81844529 | None:intergenic | 20.0% |
| !! | CAATTTGATCTAAGTTTAAA+TGG | + | chr4_1:81844548-81844567 | Msa0577480:intron | 20.0% |
| !!! | ATAATCAACTTGAGTTTTTA+GGG | + | chr4_1:81844610-81844629 | Msa0577480:intron | 20.0% |
| !!! | ACTTTTTTCTTAAATAGAGA+AGG | - | chr4_1:81844900-81844919 | None:intergenic | 20.0% |
| !!! | AAATATTCACTCACTTTTTT+TGG | - | chr4_1:81845133-81845152 | None:intergenic | 20.0% |
| !!! | AAAAAGTGAGTGAATATTTT+TGG | + | chr4_1:81845134-81845153 | Msa0577480:intron | 20.0% |
| !!! | CATAATGAAGTTATTACTTT+TGG | - | chr4_1:81845163-81845182 | None:intergenic | 20.0% |
| !! | ATTTAATAGCAAAATGTCTT+TGG | - | chr4_1:81845559-81845578 | None:intergenic | 20.0% |
| !!! | ATTATCAAATAATCGTTTTC+AGG | + | chr4_1:81846973-81846992 | Msa0577480:three_prime_UTR | 20.0% |
| !!! | TTTGGATTTTAATTTGGTTG+AGG | - | chr4_1:81843659-81843678 | None:intergenic | 25.0% |
| ! | ATGTTATCCTTAACCAAAAT+AGG | - | chr4_1:81843798-81843817 | None:intergenic | 25.0% |
| ! | GTCACTAATATAATATCCAA+TGG | + | chr4_1:81844295-81844314 | Msa0577480:intron | 25.0% |
| !!! | GCTTAGGCTTTAAAAAAATA+TGG | - | chr4_1:81844412-81844431 | None:intergenic | 25.0% |
| !! | CATAATCAACTTGAGTTTTT+AGG | + | chr4_1:81844609-81844628 | Msa0577480:intron | 25.0% |
| ! | TTCATATTACTTAAATAGGC+TGG | + | chr4_1:81844796-81844815 | Msa0577480:intron | 25.0% |
| ! | ATATGCTTAAAAAAAAGCCT+AGG | + | chr4_1:81844874-81844893 | Msa0577480:intron | 25.0% |
| ! | CTCTATTTAAGAAAAAAGTC+TGG | + | chr4_1:81844901-81844920 | Msa0577480:intron | 25.0% |
| !!! | TGTTGACTTAAAGAAAACAT+AGG | - | chr4_1:81845504-81845523 | None:intergenic | 25.0% |
| ! | CTTTATGTAACAAATAGGAA+TGG | - | chr4_1:81846247-81846266 | None:intergenic | 25.0% |
| ! | AATTGTTGTATAAACATCGT+AGG | + | chr4_1:81846300-81846319 | Msa0577480:intron | 25.0% |
| ! | TAAGCAATTTCAATCAACTT+TGG | - | chr4_1:81846601-81846620 | None:intergenic | 25.0% |
| !! | GTCAATATCTGTTACATTTT+GGG | - | chr4_1:81846895-81846914 | None:intergenic | 25.0% |
| !! | AGTCAATATCTGTTACATTT+TGG | - | chr4_1:81846896-81846915 | None:intergenic | 25.0% |
| !! | TTGTTGTTGATAGCATAGAA+GGG | - | chr4_1:81843536-81843555 | None:intergenic | 30.0% |
| TTGATGTTAACTGCTTTCTT+TGG | - | chr4_1:81843617-81843636 | None:intergenic | 30.0% | |
| CCAAATTAAAATCCAAAACC+CGG | + | chr4_1:81843662-81843681 | Msa0577480:CDS | 30.0% | |
| !!! | TGGAATACCTATTTTGGTTA+AGG | + | chr4_1:81843788-81843807 | Msa0577480:CDS | 30.0% |
| TTAACAAGTTAAGGAAAGCT+GGG | + | chr4_1:81843898-81843917 | Msa0577480:CDS | 30.0% | |
| ! | TACTTAATTTGACCATGATC+TGG | + | chr4_1:81844040-81844059 | Msa0577480:intron | 30.0% |
| !!! | TTTATCCCTCACTCTTTTTT+GGG | - | chr4_1:81844185-81844204 | None:intergenic | 30.0% |
| !!! | ATTTATCCCTCACTCTTTTT+TGG | - | chr4_1:81844186-81844205 | None:intergenic | 30.0% |
| ATCTTAAGTGGTAGAGTTAT+AGG | + | chr4_1:81844229-81844248 | Msa0577480:intron | 30.0% | |
| AATATAATATCCAATGGGTG+TGG | + | chr4_1:81844301-81844320 | Msa0577480:intron | 30.0% | |
| !! | AGGCTTTAAAAAAATATGGC+AGG | - | chr4_1:81844408-81844427 | None:intergenic | 30.0% |
| !!! | ATTTTTTTAAAGCCTAAGCC+TGG | + | chr4_1:81844413-81844432 | Msa0577480:intron | 30.0% |
| AAAAGCCTCTTAAGCTTATT+AGG | - | chr4_1:81844822-81844841 | None:intergenic | 30.0% | |
| ! | CATATTTAACTTAAAAGGCC+AGG | - | chr4_1:81844859-81844878 | None:intergenic | 30.0% |
| ! | AATCTCTTCTTAGGTGTTTT+AGG | - | chr4_1:81845054-81845073 | None:intergenic | 30.0% |
| !!! | ATTCACTCACTTTTTTTGGT+TGG | - | chr4_1:81845129-81845148 | None:intergenic | 30.0% |
| !!! | AAGTGAGTGAATATTTTTGG+AGG | + | chr4_1:81845137-81845156 | Msa0577480:intron | 30.0% |
| ATACTTAAGTTCCTATGAGA+AGG | - | chr4_1:81845186-81845205 | None:intergenic | 30.0% | |
| CATAGGAACTTAAGTATGAA+TGG | + | chr4_1:81845189-81845208 | Msa0577480:intron | 30.0% | |
| !! | ATGAATGGTTCTAGAAAATG+AGG | + | chr4_1:81845204-81845223 | Msa0577480:intron | 30.0% |
| AATATCAGTAGCAGCAAATT+TGG | + | chr4_1:81845303-81845322 | Msa0577480:CDS | 30.0% | |
| CCAATTTGCCACATATATAT+AGG | - | chr4_1:81845476-81845495 | None:intergenic | 30.0% | |
| CCTATATATATGTGGCAAAT+TGG | + | chr4_1:81845473-81845492 | Msa0577480:intron | 30.0% | |
| ! | ATGTGTAAACATTGATTGTG+TGG | + | chr4_1:81845577-81845596 | Msa0577480:intron | 30.0% |
| !!! | TTGATTGTGTGGTTTTGTAT+AGG | + | chr4_1:81845588-81845607 | Msa0577480:intron | 30.0% |
| ! | GCTCAATTTCTAAAGAAAGA+TGG | + | chr4_1:81845725-81845744 | Msa0577480:CDS | 30.0% |
| GTAAGAATATACTACGAGTT+TGG | + | chr4_1:81845773-81845792 | Msa0577480:CDS | 30.0% | |
| TGTGTACTTTCTTCAAAATC+AGG | + | chr4_1:81845931-81845950 | Msa0577480:intron | 30.0% | |
| ! | TTCTTTCAGGTACTTATTCA+AGG | - | chr4_1:81846060-81846079 | None:intergenic | 30.0% |
| !!! | ACAATATACTCACCGATTTT+GGG | - | chr4_1:81846139-81846158 | None:intergenic | 30.0% |
| !!! | TACAATATACTCACCGATTT+TGG | - | chr4_1:81846140-81846159 | None:intergenic | 30.0% |
| CTGGACTTTATGTAACAAAT+AGG | - | chr4_1:81846252-81846271 | None:intergenic | 30.0% | |
| ATGACAAGATTGTCACATAA+TGG | + | chr4_1:81846409-81846428 | Msa0577480:CDS | 30.0% | |
| TGACAAGATTGTCACATAAT+GGG | + | chr4_1:81846410-81846429 | Msa0577480:CDS | 30.0% | |
| AAGAAATAAACTTGATGCTG+TGG | + | chr4_1:81846450-81846469 | Msa0577480:CDS | 30.0% | |
| AATGGCAAGTATGTTACTAA+AGG | - | chr4_1:81846491-81846510 | None:intergenic | 30.0% | |
| TTTAGTAACATACTTGCCAT+TGG | + | chr4_1:81846490-81846509 | Msa0577480:CDS | 30.0% | |
| TCAAACTTCTAACTTTCGAA+GGG | - | chr4_1:81846662-81846681 | None:intergenic | 30.0% | |
| ATCAAACTTCTAACTTTCGA+AGG | - | chr4_1:81846663-81846682 | None:intergenic | 30.0% | |
| !! | TTGATTGGTCTGAAAATCAA+CGG | + | chr4_1:81846814-81846833 | Msa0577480:three_prime_UTR | 30.0% |
| !!! | TCAAATAATCGTTTTCAGGT+TGG | + | chr4_1:81846977-81846996 | Msa0577480:three_prime_UTR | 30.0% |
| !!! | CAAATAATCGTTTTCAGGTT+GGG | + | chr4_1:81846978-81846997 | Msa0577480:three_prime_UTR | 30.0% |
| !! | GTTGTTGTTGATAGCATAGA+AGG | - | chr4_1:81843537-81843556 | None:intergenic | 35.0% |
| TATGCTATCAACAACAACCT+TGG | + | chr4_1:81843539-81843558 | Msa0577480:CDS | 35.0% | |
| TGTTAACTGCTTTCTTTGGA+AGG | - | chr4_1:81843613-81843632 | None:intergenic | 35.0% | |
| !!! | CCGGGTTTTGGATTTTAATT+TGG | - | chr4_1:81843665-81843684 | None:intergenic | 35.0% |
| ! | GTTGCATGGAATACCTATTT+TGG | + | chr4_1:81843782-81843801 | Msa0577480:CDS | 35.0% |
| CAGGTGTAGTTAACAAGTTA+AGG | + | chr4_1:81843889-81843908 | Msa0577480:CDS | 35.0% | |
| GTTAACAAGTTAAGGAAAGC+TGG | + | chr4_1:81843897-81843916 | Msa0577480:CDS | 35.0% | |
| TAACAAGTTAAGGAAAGCTG+GGG | + | chr4_1:81843899-81843918 | Msa0577480:CDS | 35.0% | |
| AAAGCTGGGGCTATTATATT+AGG | + | chr4_1:81843912-81843931 | Msa0577480:CDS | 35.0% | |
| AAGCTGGGGCTATTATATTA+GGG | + | chr4_1:81843913-81843932 | Msa0577480:CDS | 35.0% | |
| TGAATTGAAAAGCCAGATCA+TGG | - | chr4_1:81844055-81844074 | None:intergenic | 35.0% | |
| !! | GGACTTTTTGATAGCTTATG+AGG | + | chr4_1:81844254-81844273 | Msa0577480:intron | 35.0% |
| TTGTTAACCACTGAGCTTAT+CGG | + | chr4_1:81844330-81844349 | Msa0577480:intron | 35.0% | |
| TTCTTAAATAGAGAAGGCCT+AGG | - | chr4_1:81844894-81844913 | None:intergenic | 35.0% | |
| TTTAAGAAAAAAGTCTGGCC+TGG | + | chr4_1:81844906-81844925 | Msa0577480:intron | 35.0% | |
| ATCCAGACTAATCTCTTCTT+AGG | - | chr4_1:81845063-81845082 | None:intergenic | 35.0% | |
| !!! | ACTCACTTTTTTTGGTTGGA+AGG | - | chr4_1:81845125-81845144 | None:intergenic | 35.0% |
| ACTTCATTATGCCTTCTCAT+AGG | + | chr4_1:81845172-81845191 | Msa0577480:intron | 35.0% | |
| ! | CATACATGAAGGGCATAAAA+TGG | - | chr4_1:81845362-81845381 | None:intergenic | 35.0% |
| CTACTGAGTTCATACATGAA+GGG | - | chr4_1:81845372-81845391 | None:intergenic | 35.0% | |
| ACTACTGAGTTCATACATGA+AGG | - | chr4_1:81845373-81845392 | None:intergenic | 35.0% | |
| TCATGTATGAACTCAGTAGT+AGG | + | chr4_1:81845373-81845392 | Msa0577480:CDS | 35.0% | |
| TGGGTAAGCCTATATATATG+TGG | + | chr4_1:81845465-81845484 | Msa0577480:intron | 35.0% | |
| ! | ATAGCAAAATGTCTTTGGAG+AGG | - | chr4_1:81845554-81845573 | None:intergenic | 35.0% |
| ! | TTTTGTATAGGCCTATTTGC+AGG | + | chr4_1:81845600-81845619 | Msa0577480:intron | 35.0% |
| !!! | AGGCATCGACAATTTTGATA+AGG | + | chr4_1:81845661-81845680 | Msa0577480:CDS | 35.0% |
| GCATCAAAGTATATCCCAAA+AGG | + | chr4_1:81845695-81845714 | Msa0577480:CDS | 35.0% | |
| TCAAAGTATATCCCAAAAGG+TGG | + | chr4_1:81845698-81845717 | Msa0577480:CDS | 35.0% | |
| !! | CTAAAGAAAGATGGATTGAG+AGG | + | chr4_1:81845734-81845753 | Msa0577480:CDS | 35.0% |
| GTTTGGAAATGACACATTAC+TGG | + | chr4_1:81845790-81845809 | Msa0577480:CDS | 35.0% | |
| AGACTTACCTTAACGTGTTT+AGG | - | chr4_1:81845835-81845854 | None:intergenic | 35.0% | |
| GTGAAGCAACTAATTCTTTC+AGG | - | chr4_1:81846073-81846092 | None:intergenic | 35.0% | |
| CTGAAAACACAAACGGAATT+GGG | + | chr4_1:81846359-81846378 | Msa0577480:CDS | 35.0% | |
| ATGTTACTAAAGGATGCCAA+AGG | - | chr4_1:81846481-81846500 | None:intergenic | 35.0% | |
| TATGAAAAGGATCAGCCATT+TGG | + | chr4_1:81846544-81846563 | Msa0577480:CDS | 35.0% | |
| CAAACTTCTAACTTTCGAAG+GGG | - | chr4_1:81846661-81846680 | None:intergenic | 35.0% | |
| TCGTATTCATGGGAATTGAA+GGG | - | chr4_1:81846694-81846713 | None:intergenic | 35.0% | |
| TTATCACCAACGTTGTTGAT+TGG | + | chr4_1:81846799-81846818 | Msa0577480:three_prime_UTR | 35.0% | |
| !! | TGATTGGTCTGAAAATCAAC+GGG | + | chr4_1:81846815-81846834 | Msa0577480:three_prime_UTR | 35.0% |
| TGAAAATCAACGGGACAATT+AGG | + | chr4_1:81846824-81846843 | Msa0577480:three_prime_UTR | 35.0% | |
| GATAAGTTCGCCAAATAAGA+TGG | + | chr4_1:81846863-81846882 | Msa0577480:three_prime_UTR | 35.0% | |
| TGGGTTAAAGCCATCTTATT+TGG | - | chr4_1:81846876-81846895 | None:intergenic | 35.0% | |
| ! | AAGGGAGTGTAACTAGTAGA+AGG | - | chr4_1:81843518-81843537 | None:intergenic | 40.0% |
| ! | TCCAATACTCCTTTGAGAAC+CGG | - | chr4_1:81843684-81843703 | None:intergenic | 40.0% |
| ATAAAGCTGACCAAGAGAGA+AGG | + | chr4_1:81843733-81843752 | Msa0577480:CDS | 40.0% | |
| GATAAGCTAAACACTACTGC+AGG | + | chr4_1:81843828-81843847 | Msa0577480:CDS | 40.0% | |
| TTAACTACACCTGCATCTCT+TGG | - | chr4_1:81843882-81843901 | None:intergenic | 40.0% | |
| TGGGGCTATTATATTAGGGA+AGG | + | chr4_1:81843917-81843936 | Msa0577480:CDS | 40.0% | |
| TGGTCACATTACAGGTCTAA+TGG | + | chr4_1:81843954-81843973 | Msa0577480:CDS | 40.0% | |
| TAAGTGGTAGAGTTATAGGC+TGG | + | chr4_1:81844233-81844252 | Msa0577480:intron | 40.0% | |
| !! | AGCTTAAGAGGCTTTTTGAG+AGG | + | chr4_1:81844826-81844845 | Msa0577480:intron | 40.0% |
| ATCTCCGCTGAACACATTAA+TGG | + | chr4_1:81845008-81845027 | Msa0577480:intron | 40.0% | |
| CTCACCATTAATGTGTTCAG+CGG | - | chr4_1:81845015-81845034 | None:intergenic | 40.0% | |
| GCTGAACACATTAATGGTGA+GGG | + | chr4_1:81845014-81845033 | Msa0577480:intron | 40.0% | |
| CTGAACACATTAATGGTGAG+GGG | + | chr4_1:81845015-81845034 | Msa0577480:intron | 40.0% | |
| ! | CACCTAAGAAGAGATTAGTC+TGG | + | chr4_1:81845058-81845077 | Msa0577480:intron | 40.0% |
| TAGTCTGGATATCAGTCCAA+TGG | + | chr4_1:81845073-81845092 | Msa0577480:intron | 40.0% | |
| TGTGCAGAATCCATACACAT+TGG | + | chr4_1:81845249-81845268 | Msa0577480:intron | 40.0% | |
| CAAGGATCATCCAATGTGTA+TGG | - | chr4_1:81845262-81845281 | None:intergenic | 40.0% | |
| TACACATTGGATGATCCTTG+TGG | + | chr4_1:81845262-81845281 | Msa0577480:CDS | 40.0% | |
| TTTGCTGCTACTGATATTGC+TGG | - | chr4_1:81845301-81845320 | None:intergenic | 40.0% | |
| ! | AATTTGGTGACTGTGTCACT+TGG | + | chr4_1:81845319-81845338 | Msa0577480:CDS | 40.0% |
| AGTAGTAGGCATCAAACCAA+CGG | + | chr4_1:81845387-81845406 | Msa0577480:CDS | 40.0% | |
| TCAGATACAGTCCTGCAAAT+AGG | - | chr4_1:81845614-81845633 | None:intergenic | 40.0% | |
| TACGTTCTTGAAACCATAGC+AGG | + | chr4_1:81845641-81845660 | Msa0577480:CDS | 40.0% | |
| AAAATTGTCGATGCCTGCTA+TGG | - | chr4_1:81845657-81845676 | None:intergenic | 40.0% | |
| ! | ATTGAGCATAGCCACCTTTT+GGG | - | chr4_1:81845712-81845731 | None:intergenic | 40.0% |
| ! | AATTGAGCATAGCCACCTTT+TGG | - | chr4_1:81845713-81845732 | None:intergenic | 40.0% |
| TGGATTGAGAGGAAAGAGAT+TGG | + | chr4_1:81845745-81845764 | Msa0577480:CDS | 40.0% | |
| GGATTGAGAGGAAAGAGATT+GGG | + | chr4_1:81845746-81845765 | Msa0577480:CDS | 40.0% | |
| AGCTACACCTAAACACGTTA+AGG | + | chr4_1:81845825-81845844 | Msa0577480:CDS | 40.0% | |
| TTCTTCAAAATCAGGCGAAG+AGG | + | chr4_1:81845939-81845958 | Msa0577480:intron | 40.0% | |
| ! | TTTTGGGCGTTTCTTGTTGA+AGG | - | chr4_1:81846123-81846142 | None:intergenic | 40.0% |
| CAACAAGAAACGCCCAAAAT+CGG | + | chr4_1:81846124-81846143 | Msa0577480:CDS | 40.0% | |
| TCGTGATCAATGTTCATAGC+TGG | - | chr4_1:81846271-81846290 | None:intergenic | 40.0% | |
| TCGTAGGAGAAACTTGAGTA+TGG | + | chr4_1:81846316-81846335 | Msa0577480:intron | 40.0% | |
| GCTGAAAACACAAACGGAAT+TGG | + | chr4_1:81846358-81846377 | Msa0577480:CDS | 40.0% | |
| TGATGCTGTGGTAATACCTT+TGG | + | chr4_1:81846462-81846481 | Msa0577480:CDS | 40.0% | |
| AGTAACATACTTGCCATTGG+AGG | + | chr4_1:81846493-81846512 | Msa0577480:CDS | 40.0% | |
| TGTTCCAGCAGGATATGAAA+AGG | + | chr4_1:81846531-81846550 | Msa0577480:CDS | 40.0% | |
| ! | TGATCCTTTTCATATCCTGC+TGG | - | chr4_1:81846538-81846557 | None:intergenic | 40.0% |
| ! | CAGCCATTTGGAATTTGCTT+CGG | + | chr4_1:81846556-81846575 | Msa0577480:CDS | 40.0% |
| ATTTGCTTCGGAGGTTTGAA+AGG | + | chr4_1:81846568-81846587 | Msa0577480:CDS | 40.0% | |
| TTTGCTTCGGAGGTTTGAAA+GGG | + | chr4_1:81846569-81846588 | Msa0577480:CDS | 40.0% | |
| GATCAAAGTTGCTTGCTCAA+AGG | - | chr4_1:81846626-81846645 | None:intergenic | 40.0% | |
| TATTCATGGGAATTGAAGGG+GGG | - | chr4_1:81846691-81846710 | None:intergenic | 40.0% | |
| GTATTCATGGGAATTGAAGG+GGG | - | chr4_1:81846692-81846711 | None:intergenic | 40.0% | |
| CGTATTCATGGGAATTGAAG+GGG | - | chr4_1:81846693-81846712 | None:intergenic | 40.0% | |
| GTCGTATTCATGGGAATTGA+AGG | - | chr4_1:81846695-81846714 | None:intergenic | 40.0% | |
| GAAGAAGCAGTCGTATTCAT+GGG | - | chr4_1:81846704-81846723 | None:intergenic | 40.0% | |
| AGAAGAAGCAGTCGTATTCA+TGG | - | chr4_1:81846705-81846724 | None:intergenic | 40.0% | |
| TTCAGACCAATCAACAACGT+TGG | - | chr4_1:81846808-81846827 | None:intergenic | 40.0% | |
| !!! | ATAATCGTTTTCAGGTTGGG+CGG | + | chr4_1:81846981-81847000 | Msa0577480:three_prime_UTR | 40.0% |
| TCAACAACAACCTTGGCTAG+TGG | + | chr4_1:81843546-81843565 | Msa0577480:CDS | 45.0% | |
| GATTGAGAATCCACTAGCCA+AGG | - | chr4_1:81843559-81843578 | None:intergenic | 45.0% | |
| !! | GGCTAGTGGATTCTCAATCA+AGG | + | chr4_1:81843560-81843579 | Msa0577480:CDS | 45.0% |
| ! | GCTTTCTTTGGAAGGCAAGT+TGG | - | chr4_1:81843605-81843624 | None:intergenic | 45.0% |
| ATCCAAAACCCGGTTCTCAA+AGG | + | chr4_1:81843672-81843691 | Msa0577480:CDS | 45.0% | |
| ! | CCAATACTCCTTTGAGAACC+GGG | - | chr4_1:81843683-81843702 | None:intergenic | 45.0% |
| !! | GGTTCTCAAAGGAGTATTGG+AGG | + | chr4_1:81843683-81843702 | Msa0577480:CDS | 45.0% |
| TCTGCTTGTGCTAATGCATC+TGG | - | chr4_1:81843714-81843733 | None:intergenic | 45.0% | |
| TGAAAGAGAACCAGGTGCTT+TGG | - | chr4_1:81843760-81843779 | None:intergenic | 45.0% | |
| ! | AAGCACCTGGTTCTCTTTCA+AGG | + | chr4_1:81843760-81843779 | Msa0577480:CDS | 45.0% |
| TGCAACCTTGAAAGAGAACC+AGG | - | chr4_1:81843768-81843787 | None:intergenic | 45.0% | |
| GGTTCTCTTTCAAGGTTGCA+TGG | + | chr4_1:81843768-81843787 | Msa0577480:CDS | 45.0% | |
| ! | GCAGGTTCTTTTGCATTGCT+TGG | + | chr4_1:81843846-81843865 | Msa0577480:CDS | 45.0% |
| ATGTGACCACTCACTCAAAG+TGG | - | chr4_1:81843943-81843962 | None:intergenic | 45.0% | |
| TGAGTGAGTGGTCACATTAC+AGG | + | chr4_1:81843946-81843965 | Msa0577480:CDS | 45.0% | |
| !!! | ACTCTTTTTTGGGACAGCTC+TGG | - | chr4_1:81844175-81844194 | None:intergenic | 45.0% |
| AGCTGTCCCAAAAAAGAGTG+AGG | + | chr4_1:81844176-81844195 | Msa0577480:intron | 45.0% | |
| GCTGTCCCAAAAAAGAGTGA+GGG | + | chr4_1:81844177-81844196 | Msa0577480:intron | 45.0% | |
| ACAAACTGAACCACACCCAT+TGG | - | chr4_1:81844314-81844333 | None:intergenic | 45.0% | |
| TAACCACTGAGCTTATCGGT+AGG | + | chr4_1:81844334-81844353 | Msa0577480:intron | 45.0% | |
| AACCACTGAGCTTATCGGTA+GGG | + | chr4_1:81844335-81844354 | Msa0577480:intron | 45.0% | |
| TTATCGGTAGGGATGGGAAT+AGG | + | chr4_1:81844346-81844365 | Msa0577480:intron | 45.0% | |
| AAATATGGCAGGCCAGACTT+AGG | - | chr4_1:81844397-81844416 | None:intergenic | 45.0% | |
| CTAAAAAGTAGGCCTGTGAC+AGG | - | chr4_1:81844446-81844465 | None:intergenic | 45.0% | |
| !!! | CTGTCACAGGCCTACTTTTT+AGG | + | chr4_1:81844444-81844463 | Msa0577480:intron | 45.0% |
| CAGACTCAGGCCTAAAAAGT+AGG | - | chr4_1:81844457-81844476 | None:intergenic | 45.0% | |
| !!! | CTACTTTTTAGGCCTGAGTC+TGG | + | chr4_1:81844455-81844474 | Msa0577480:intron | 45.0% |
| ! | GGCCTTCTGAAAGTCTGATA+CGG | + | chr4_1:81844476-81844495 | Msa0577480:intron | 45.0% |
| GACCGTATCAGACTTTCAGA+AGG | - | chr4_1:81844481-81844500 | None:intergenic | 45.0% | |
| ! | GCTGGCCTAATAAGCTTAAG+AGG | + | chr4_1:81844814-81844833 | Msa0577480:intron | 45.0% |
| CGCTGAACACATTAATGGTG+AGG | + | chr4_1:81845013-81845032 | Msa0577480:intron | 45.0% | |
| ! | TTCCACTAGCTTCAGTCCAT+TGG | - | chr4_1:81845092-81845111 | None:intergenic | 45.0% |
| GATCCTTGTGGATCAAGTAG+TGG | + | chr4_1:81845274-81845293 | Msa0577480:CDS | 45.0% | |
| ! | TCACTTGGTACTGAAACCGA+TGG | + | chr4_1:81845334-81845353 | Msa0577480:CDS | 45.0% |
| AGGGCATAAAATGGAGCCAT+CGG | - | chr4_1:81845353-81845372 | None:intergenic | 45.0% | |
| GTGTAGTTCCAATTAGCCCA+AGG | + | chr4_1:81845431-81845450 | Msa0577480:CDS | 45.0% | |
| TGCTTCACCAGTGAAAAGCT+TGG | + | chr4_1:81846085-81846104 | Msa0577480:CDS | 45.0% | |
| ! | ACATCTGCCAAGCTTTTCAC+TGG | - | chr4_1:81846095-81846114 | None:intergenic | 45.0% |
| CTTACAGTCGTGAAGCAAAC+TGG | - | chr4_1:81846189-81846208 | None:intergenic | 45.0% | |
| CTGCAGGCTGAAAACACAAA+CGG | + | chr4_1:81846352-81846371 | Msa0577480:CDS | 45.0% | |
| CCTCCGAAGCAAATTCCAAA+TGG | - | chr4_1:81846562-81846581 | None:intergenic | 45.0% | |
| ! | CCATTTGGAATTTGCTTCGG+AGG | + | chr4_1:81846559-81846578 | Msa0577480:CDS | 45.0% |
| ACTTCTAACTTTCGAAGGGG+AGG | - | chr4_1:81846658-81846677 | None:intergenic | 45.0% | |
| ATTCATGGGAATTGAAGGGG+GGG | - | chr4_1:81846690-81846709 | None:intergenic | 45.0% | |
| AAGAGAGCTAGCACATGCTG+AGG | - | chr4_1:81843475-81843494 | None:intergenic | 50.0% | |
| !! | CTCCTTTGAGAACCGGGTTT+TGG | - | chr4_1:81843677-81843696 | None:intergenic | 50.0% |
| ! | CCCGGTTCTCAAAGGAGTAT+TGG | + | chr4_1:81843680-81843699 | Msa0577480:CDS | 50.0% |
| GTGCTTTGGTCCTTCTCTCT+TGG | - | chr4_1:81843746-81843765 | None:intergenic | 50.0% | |
| TCAGTAGTGCCAAGAGATGC+AGG | + | chr4_1:81843870-81843889 | Msa0577480:CDS | 50.0% | |
| AGGTCTAATGGAGCTCCTAG+CGG | + | chr4_1:81843966-81843985 | Msa0577480:CDS | 50.0% | |
| TGCTAGAGGTGGACAAGGAA+AGG | + | chr4_1:81843995-81844014 | Msa0577480:CDS | 50.0% | |
| ATCCCTACCGATAAGCTCAG+TGG | - | chr4_1:81844340-81844359 | None:intergenic | 50.0% | |
| ACTGAGCTTATCGGTAGGGA+TGG | + | chr4_1:81844339-81844358 | Msa0577480:intron | 50.0% | |
| CTGAGCTTATCGGTAGGGAT+GGG | + | chr4_1:81844340-81844359 | Msa0577480:intron | 50.0% | |
| ACTTTCAGAAGGCCAGACTC+AGG | - | chr4_1:81844470-81844489 | None:intergenic | 50.0% | |
| AACTTAAAAGGCCAGGCCAC+AGG | - | chr4_1:81844852-81844871 | None:intergenic | 50.0% | |
| !! | GTCCAATGGACTGAAGCTAG+TGG | + | chr4_1:81845087-81845106 | Msa0577480:intron | 50.0% |
| GGTCCACTACTTGATCCACA+AGG | - | chr4_1:81845280-81845299 | None:intergenic | 50.0% | |
| GTAGGCATCAAACCAACGGT+TGG | + | chr4_1:81845391-81845410 | Msa0577480:CDS | 50.0% | |
| CTACTAGTGAGACCAACCGT+TGG | - | chr4_1:81845406-81845425 | None:intergenic | 50.0% | |
| ! | GTTGGTCTCACTAGTAGAGC+AGG | + | chr4_1:81845409-81845428 | Msa0577480:CDS | 50.0% |
| GTGTCTTGCCTTGGGCTAAT+TGG | - | chr4_1:81845442-81845461 | None:intergenic | 50.0% | |
| ACCCAACTGTGTCTTGCCTT+GGG | - | chr4_1:81845450-81845469 | None:intergenic | 50.0% | |
| TACCCAACTGTGTCTTGCCT+TGG | - | chr4_1:81845451-81845470 | None:intergenic | 50.0% | |
| GAGAGGAAAGAGATTGGGAG+TGG | + | chr4_1:81845751-81845770 | Msa0577480:CDS | 50.0% | |
| CTTGCCATTGGAGGTTATCC+TGG | + | chr4_1:81846502-81846521 | Msa0577480:CDS | 50.0% | |
| CACTCCAGGATAACCTCCAA+TGG | - | chr4_1:81846509-81846528 | None:intergenic | 50.0% | |
| TCTAACTTTCGAAGGGGAGG+TGG | - | chr4_1:81846655-81846674 | None:intergenic | 50.0% | |
| AGCTCACCAGTACCAACAGT+TGG | + | chr4_1:81847019-81847038 | Msa0577480:three_prime_UTR | 50.0% | |
| ! | GAGAGAAGGACCAAAGCACC+TGG | + | chr4_1:81843747-81843766 | Msa0577480:CDS | 55.0% |
| ! | GGAAGGCCACTTTGAGTGAG+TGG | + | chr4_1:81843934-81843953 | Msa0577480:CDS | 55.0% |
| CTAATGGAGCTCCTAGCGGT+TGG | + | chr4_1:81843970-81843989 | Msa0577480:CDS | 55.0% | |
| ! | TGGAGTGCTAGAGGTGGACA+AGG | + | chr4_1:81843990-81844009 | Msa0577480:CDS | 55.0% |
| GGTAGGGATGGGAATAGGCT+AGG | + | chr4_1:81844351-81844370 | Msa0577480:intron | 55.0% | |
| GACTTAGGCCTTGCAAAGCC+TGG | - | chr4_1:81844382-81844401 | None:intergenic | 55.0% | |
| GGCTTTGCAAGGCCTAAGTC+TGG | + | chr4_1:81844382-81844401 | Msa0577480:intron | 55.0% | |
| TAAAGCCTAAGCCTGGCCTG+CGG | + | chr4_1:81844420-81844439 | Msa0577480:intron | 55.0% | |
| !! | GAGGCTTTTTGAGAGGCCTG+TGG | + | chr4_1:81844833-81844852 | Msa0577480:intron | 55.0% |
| !! | TTTTTGAGAGGCCTGTGGCC+TGG | + | chr4_1:81844838-81844857 | Msa0577480:intron | 55.0% |
| ACAAGGGATGGGAATAGGCC+AGG | - | chr4_1:81844969-81844988 | None:intergenic | 55.0% | |
| GGCCTATTCCCATCCCTTGT+CGG | + | chr4_1:81844969-81844988 | Msa0577480:intron | 55.0% | |
| GCCTATTCCCATCCCTTGTC+GGG | + | chr4_1:81844970-81844989 | Msa0577480:intron | 55.0% | |
| CCTATTCCCATCCCTTGTCG+GGG | + | chr4_1:81844971-81844990 | Msa0577480:intron | 55.0% | |
| GAAGTTCCCCGACAAGGGAT+GGG | - | chr4_1:81844980-81844999 | None:intergenic | 55.0% | |
| ACTGCGAAGTTCCCCGACAA+GGG | - | chr4_1:81844985-81845004 | None:intergenic | 55.0% | |
| AACTGCGAAGTTCCCCGACA+AGG | - | chr4_1:81844986-81845005 | None:intergenic | 55.0% | |
| AGCCCAAGGCAAGACACAGT+TGG | + | chr4_1:81845445-81845464 | Msa0577480:CDS | 55.0% | |
| GCCCAAGGCAAGACACAGTT+GGG | + | chr4_1:81845446-81845465 | Msa0577480:CDS | 55.0% | |
| TGGCCAAGATCTCATGCTGC+AGG | + | chr4_1:81846336-81846355 | Msa0577480:CDS | 55.0% | |
| CAGCCTGCAGCATGAGATCT+TGG | - | chr4_1:81846342-81846361 | None:intergenic | 55.0% | |
| CCTGCTGGAACAATCACTCC+AGG | - | chr4_1:81846523-81846542 | None:intergenic | 55.0% | |
| CCTGGAGTGATTGTTCCAGC+AGG | + | chr4_1:81846520-81846539 | Msa0577480:CDS | 55.0% | |
| CCTCTAGCACTCCAACCGCT+AGG | - | chr4_1:81843984-81844003 | None:intergenic | 60.0% | |
| ! | CCTAGCGGTTGGAGTGCTAG+AGG | + | chr4_1:81843981-81844000 | Msa0577480:CDS | 60.0% |
| ! | AGCGGTTGGAGTGCTAGAGG+TGG | + | chr4_1:81843984-81844003 | Msa0577480:CDS | 60.0% |
| GGAATAGGCTAGGCCAAGCC+AGG | + | chr4_1:81844361-81844380 | Msa0577480:intron | 60.0% | |
| AGGCCAAGCCAGGCTTTGCA+AGG | + | chr4_1:81844371-81844390 | Msa0577480:intron | 60.0% | |
| AGGCCTTGCAAAGCCTGGCT+TGG | - | chr4_1:81844377-81844396 | None:intergenic | 60.0% | |
| CCCCGACAAGGGATGGGAAT+AGG | - | chr4_1:81844974-81844993 | None:intergenic | 60.0% | |
| CGAAGTTCCCCGACAAGGGA+TGG | - | chr4_1:81844981-81845000 | None:intergenic | 60.0% | |
| AGTCTGGCCTGGCCTGTCGT+AGG | + | chr4_1:81844917-81844936 | Msa0577480:intron | 65.0% | |
| CCTACGGCCTAGCCTACGAC+AGG | - | chr4_1:81844932-81844951 | None:intergenic | 65.0% | |
| CCTGTCGTAGGCTAGGCCGT+AGG | + | chr4_1:81844929-81844948 | Msa0577480:intron | 65.0% | |
| ATAGGCCAGGCCGGCCTACA+GGG | - | chr4_1:81844956-81844975 | None:intergenic | 65.0% | |
| AATAGGCCAGGCCGGCCTAC+AGG | - | chr4_1:81844957-81844976 | None:intergenic | 65.0% | |
| GGGATGGGAATAGGCCAGGC+CGG | - | chr4_1:81844965-81844984 | None:intergenic | 65.0% | |
| ACAGGCCGCAGGCCAGGCTT+AGG | - | chr4_1:81844428-81844447 | None:intergenic | 70.0% | |
| GTAGGCCTGTGACAGGCCGC+AGG | - | chr4_1:81844439-81844458 | None:intergenic | 70.0% | |
| GGCCTGGCCTGTCGTAGGCT+AGG | + | chr4_1:81844922-81844941 | Msa0577480:intron | 70.0% | |
| GGCCTAGCCTACGACAGGCC+AGG | - | chr4_1:81844927-81844946 | None:intergenic | 70.0% | |
| GCTAGGCCGTAGGCCCCTGT+AGG | + | chr4_1:81844939-81844958 | Msa0577480:intron | 70.0% | |
| TAGGCCAGGCCGGCCTACAG+GGG | - | chr4_1:81844955-81844974 | None:intergenic | 70.0% | |
| CCTGTGACAGGCCGCAGGCC+AGG | - | chr4_1:81844434-81844453 | None:intergenic | 75.0% | |
| CCTGGCCTGCGGCCTGTCAC+AGG | + | chr4_1:81844431-81844450 | Msa0577480:intron | 75.0% | |
| GGCCGTAGGCCCCTGTAGGC+CGG | + | chr4_1:81844943-81844962 | Msa0577480:intron | 75.0% | |
| GGCCGGCCTACAGGGGCCTA+CGG | - | chr4_1:81844948-81844967 | None:intergenic | 75.0% | |
| TAGGCCCCTGTAGGCCGGCC+TGG | + | chr4_1:81844948-81844967 | Msa0577480:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 81843455 | 81847042 | 81843455 | ID=Msa0577480;Name=Msa0577480 |
| chr4_1 | mRNA | 81843455 | 81847042 | 81843455 | ID=Msa0577480-mRNA-1;Parent=Msa0577480;Name=Msa0577480-mRNA-1;_AED=0.43;_eAED=0.43;_QI=13|1|1|1|1|1|5|361|516 |
| chr4_1 | exon | 81843455 | 81844016 | 81843455 | ID=Msa0577480-mRNA-1:exon:29500;Parent=Msa0577480-mRNA-1 |
| chr4_1 | exon | 81845256 | 81845467 | 81845256 | ID=Msa0577480-mRNA-1:exon:29501;Parent=Msa0577480-mRNA-1 |
| chr4_1 | exon | 81845610 | 81845846 | 81845610 | ID=Msa0577480-mRNA-1:exon:29502;Parent=Msa0577480-mRNA-1 |
| chr4_1 | exon | 81845953 | 81846145 | 81845953 | ID=Msa0577480-mRNA-1:exon:29503;Parent=Msa0577480-mRNA-1 |
| chr4_1 | exon | 81846322 | 81847042 | 81846322 | ID=Msa0577480-mRNA-1:exon:29504;Parent=Msa0577480-mRNA-1 |
| chr4_1 | five_prime_UTR | 81843455 | 81843467 | 81843455 | ID=Msa0577480-mRNA-1:five_prime_utr;Parent=Msa0577480-mRNA-1 |
| chr4_1 | CDS | 81843468 | 81844016 | 81843468 | ID=Msa0577480-mRNA-1:cds;Parent=Msa0577480-mRNA-1 |
| chr4_1 | CDS | 81845256 | 81845467 | 81845256 | ID=Msa0577480-mRNA-1:cds;Parent=Msa0577480-mRNA-1 |
| chr4_1 | CDS | 81845610 | 81845846 | 81845610 | ID=Msa0577480-mRNA-1:cds;Parent=Msa0577480-mRNA-1 |
| chr4_1 | CDS | 81845953 | 81846145 | 81845953 | ID=Msa0577480-mRNA-1:cds;Parent=Msa0577480-mRNA-1 |
| chr4_1 | CDS | 81846322 | 81846681 | 81846322 | ID=Msa0577480-mRNA-1:cds;Parent=Msa0577480-mRNA-1 |
| chr4_1 | three_prime_UTR | 81846682 | 81847042 | 81846682 | ID=Msa0577480-mRNA-1:three_prime_utr;Parent=Msa0577480-mRNA-1 |
| Gene Sequence |
| Protein sequence |
