Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1306820 | sp|A0A1P8B760|AMI4G_ARATH | 62.705 | 488 | 168 | 6 | 27 | 509 | 30 | 508 | 0.0 | 573 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1306820 | A0A072U458 | 94.961 | 516 | 25 | 1 | 1 | 516 | 1 | 515 | 0.0 | 991 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000370 | Msa1306820 | 0.811853 | 5.687147e-51 | -8.615850e-47 |
| Msa0036730 | Msa1306820 | 0.812886 | 3.382246e-51 | -8.615850e-47 |
| Msa0038530 | Msa1306820 | 0.810223 | 1.282863e-50 | -8.615850e-47 |
| Msa0045810 | Msa1306820 | 0.811214 | 7.829887e-51 | -8.615850e-47 |
| Msa0046200 | Msa1306820 | 0.804352 | 2.251689e-49 | -8.615850e-47 |
| Msa0062190 | Msa1306820 | 0.800653 | 1.302671e-48 | -8.615850e-47 |
| Msa0646430 | Msa1306820 | 0.807480 | 4.952313e-50 | -8.615850e-47 |
| Msa0722890 | Msa1306820 | 0.833913 | 4.056987e-56 | -8.615850e-47 |
| Msa0723090 | Msa1306820 | 0.823399 | 1.414371e-53 | -8.615850e-47 |
| Msa0139500 | Msa1306820 | 0.815252 | 1.016819e-51 | -8.615850e-47 |
| Msa0183710 | Msa1306820 | 0.812802 | 3.529049e-51 | -8.615850e-47 |
| Msa1253520 | Msa1306820 | 0.809256 | 2.069636e-50 | -8.615850e-47 |
| Msa1257200 | Msa1306820 | 0.811967 | 5.371996e-51 | -8.615850e-47 |
| Msa1261160 | Msa1306820 | 0.832213 | 1.074581e-55 | -8.615850e-47 |
| Msa1290380 | Msa1306820 | 0.806964 | 6.369698e-50 | -8.615850e-47 |
| Msa1290440 | Msa1306820 | 0.808767 | 2.633819e-50 | -8.615850e-47 |
| Msa1300420 | Msa1306820 | 0.807803 | 4.229179e-50 | -8.615850e-47 |
| Msa1306820 | Msa1323070 | 0.820537 | 6.510447e-53 | -8.615850e-47 |
| Msa1306820 | Msa1381030 | 0.816003 | 6.919409e-52 | -8.615850e-47 |
| Msa1306820 | Msa1407840 | 0.801382 | 9.246245e-49 | -8.615850e-47 |
| Msa1306820 | Msa1433360 | 0.810771 | 9.768153e-51 | -8.615850e-47 |
| Msa1306820 | Msa1437810 | 0.804644 | 1.957124e-49 | -8.615850e-47 |
| Msa1306820 | Msa1437980 | 0.812489 | 4.131739e-51 | -8.615850e-47 |
| Msa1306820 | Msa1439250 | 0.803584 | 3.251874e-49 | -8.615850e-47 |
| Msa1306820 | Msa1440430 | 0.815337 | 9.733028e-52 | -8.615850e-47 |
| Msa1306820 | Msa1447100 | 0.805500 | 1.295256e-49 | -8.615850e-47 |
| Msa0386540 | Msa1306820 | 0.806208 | 9.195928e-50 | -8.615850e-47 |
| Msa0387930 | Msa1306820 | 0.807769 | 4.299536e-50 | -8.615850e-47 |
| Msa0437480 | Msa1306820 | 0.819659 | 1.034281e-52 | -8.615850e-47 |
| Msa0440350 | Msa1306820 | 0.828509 | 8.644392e-55 | -8.615850e-47 |
| Msa1022420 | Msa1306820 | 0.812834 | 3.472150e-51 | -8.615850e-47 |
| Msa1041060 | Msa1306820 | 0.806922 | 6.499927e-50 | -8.615850e-47 |
| Msa1044250 | Msa1306820 | 0.812613 | 3.881099e-51 | -8.615850e-47 |
| Msa1082410 | Msa1306820 | 0.830703 | 2.529961e-55 | -8.615850e-47 |
| Msa1088320 | Msa1306820 | 0.809949 | 1.469679e-50 | -8.615850e-47 |
| Msa1090280 | Msa1306820 | 0.820012 | 8.587225e-53 | -8.615850e-47 |
| Msa0354840 | Msa1306820 | 0.822269 | 2.592962e-53 | -8.615850e-47 |
| Msa1156720 | Msa1306820 | 0.813041 | 3.127772e-51 | -8.615850e-47 |
| Msa1165460 | Msa1306820 | 0.811457 | 6.934484e-51 | -8.615850e-47 |
| Msa1206920 | Msa1306820 | 0.808410 | 3.139488e-50 | -8.615850e-47 |
| Msa0563870 | Msa1306820 | 0.974036 | 1.873079e-137 | -8.615850e-47 |
| Msa0577480 | Msa1306820 | 0.986880 | 2.733066e-168 | -8.615850e-47 |
| Msa0577790 | Msa1306820 | 0.985006 | 3.034777e-162 | -8.615850e-47 |
| Msa0931020 | Msa1306820 | 0.817012 | 4.112357e-52 | -8.615850e-47 |
| Msa0956350 | Msa1306820 | 0.817179 | 3.771205e-52 | -8.615850e-47 |
| Msa0967780 | Msa1306820 | 0.808422 | 3.120962e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1306820 | MtrunA17_Chr8g0377691 | 94.961 | 516 | 25 | 1 | 1 | 516 | 1 | 515 | 0.0 | 991 |
| Msa1306820 | MtrunA17_Chr8g0377701 | 91.245 | 514 | 45 | 0 | 1 | 514 | 1 | 514 | 0.0 | 949 |
| Msa1306820 | MtrunA17_Chr8g0377651 | 84.913 | 517 | 73 | 2 | 1 | 516 | 3 | 515 | 0.0 | 882 |
| Msa1306820 | MtrunA17_Chr8g0377681 | 83.789 | 512 | 81 | 2 | 6 | 516 | 3 | 513 | 0.0 | 868 |
| Msa1306820 | MtrunA17_Chr8g0377641 | 83.398 | 518 | 79 | 3 | 1 | 516 | 1 | 513 | 0.0 | 867 |
| Msa1306820 | MtrunA17_Chr4g0037521 | 59.524 | 504 | 189 | 9 | 16 | 509 | 9 | 507 | 0.0 | 565 |
| Msa1306820 | MtrunA17_Chr4g0037491 | 57.049 | 305 | 117 | 7 | 206 | 500 | 1 | 301 | 1.50e-112 | 335 |
| Msa1306820 | MtrunA17_Chr8g0377661 | 87.179 | 78 | 10 | 0 | 439 | 516 | 1 | 78 | 8.08e-40 | 139 |
| Msa1306820 | MtrunA17_Chr8g0385461 | 33.600 | 250 | 149 | 7 | 41 | 288 | 162 | 396 | 1.92e-30 | 125 |
| Msa1306820 | MtrunA17_Chr4g0037501 | 64.894 | 94 | 31 | 2 | 106 | 197 | 2 | 95 | 4.50e-30 | 113 |
| Msa1306820 | MtrunA17_Chr3g0097801 | 33.457 | 269 | 168 | 5 | 54 | 318 | 55 | 316 | 2.92e-26 | 112 |
| Msa1306820 | MtrunA17_Chr2g0279961 | 25.761 | 493 | 317 | 16 | 33 | 501 | 121 | 588 | 1.04e-21 | 99.0 |
| Msa1306820 | MtrunA17_Chr3g0130801 | 25.904 | 498 | 314 | 21 | 41 | 516 | 200 | 664 | 1.10e-17 | 86.3 |
| Msa1306820 | MtrunA17_Chr8g0384851 | 23.047 | 512 | 330 | 17 | 22 | 504 | 117 | 593 | 2.63e-13 | 72.4 |
| Msa1306820 | MtrunA17_Chr1g0191741 | 39.496 | 119 | 66 | 3 | 141 | 258 | 63 | 176 | 3.30e-13 | 71.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1306820 | AT4G34880.2 | 62.705 | 488 | 168 | 6 | 27 | 509 | 30 | 508 | 0.0 | 573 |
| Msa1306820 | AT4G34880.1 | 55.852 | 487 | 157 | 7 | 27 | 509 | 30 | 462 | 7.71e-178 | 508 |
| Msa1306820 | AT5G07360.1 | 33.469 | 245 | 148 | 7 | 41 | 282 | 204 | 436 | 2.76e-28 | 119 |
| Msa1306820 | AT5G07360.3 | 33.469 | 245 | 148 | 7 | 41 | 282 | 204 | 436 | 2.76e-28 | 119 |
| Msa1306820 | AT3G25660.1 | 33.673 | 294 | 176 | 8 | 53 | 339 | 57 | 338 | 2.92e-25 | 109 |
| Msa1306820 | AT5G07360.2 | 33.061 | 245 | 142 | 8 | 41 | 282 | 204 | 429 | 3.57e-25 | 110 |
| Msa1306820 | AT5G64440.1 | 27.734 | 256 | 169 | 5 | 36 | 284 | 125 | 371 | 2.34e-17 | 85.5 |
| Msa1306820 | AT1G08980.1 | 40.336 | 119 | 65 | 3 | 141 | 258 | 64 | 177 | 7.24e-14 | 73.9 |
Find 146 sgRNAs with CRISPR-Local
Find 281 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACAATATACTCACCGATTT+TGG | 0.052247 | 8_4:-1781496 | None:intergenic |
| AGTCAATATCTGTTACATTT+TGG | 0.120231 | 8_4:-1782252 | None:intergenic |
| GTTGCATGGAATACCTATTT+TGG | 0.183488 | 8_4:+1779141 | Msa1306820:CDS |
| AAAGCTGGGGCTATTATATT+AGG | 0.207407 | 8_4:+1779271 | Msa1306820:CDS |
| GTGAAGCAACTAATTCTTTC+AGG | 0.216627 | 8_4:-1781429 | None:intergenic |
| CTCCTTTGAGAACCGGGTTT+TGG | 0.235272 | 8_4:-1779033 | None:intergenic |
| TGGGTTAAAGCCATCTTATT+TGG | 0.251946 | 8_4:-1782232 | None:intergenic |
| AATATCAGTAGCAGCAAATT+TGG | 0.254182 | 8_4:+1780662 | Msa1306820:CDS |
| GTGTCTTGCCTTGGGCTAAT+TGG | 0.289799 | 8_4:-1780798 | None:intergenic |
| TGAAAATCAACGGGACAATT+AGG | 0.295722 | 8_4:+1782183 | Msa1306820:three_prime_UTR |
| TGAGTGAGTGGTCACATTAC+AGG | 0.307159 | 8_4:+1779305 | Msa1306820:CDS |
| AATTGAGCATAGCCACCTTT+TGG | 0.307622 | 8_4:-1781069 | None:intergenic |
| ATGACAAGATTGTCACATAA+TGG | 0.309835 | 8_4:+1781768 | Msa1306820:CDS |
| TTGATGTTAACTGCTTTCTT+TGG | 0.312414 | 8_4:-1778973 | None:intergenic |
| TCTGCTTGTGCTAATGCATC+TGG | 0.313056 | 8_4:-1779070 | None:intergenic |
| ATGTTATCCTTAACCAAAAT+AGG | 0.317243 | 8_4:-1779154 | None:intergenic |
| CAGCCTGCAGCATGAGATCT+TGG | 0.321727 | 8_4:-1781698 | None:intergenic |
| GTTTGGAAATGACACATTAC+TGG | 0.325517 | 8_4:+1781149 | Msa1306820:CDS |
| TACCCAACTGTGTCTTGCCT+TGG | 0.328875 | 8_4:-1780807 | None:intergenic |
| CATACATGAAGGGCATAAAA+TGG | 0.329473 | 8_4:-1780718 | None:intergenic |
| GCTGAAAACACAAACGGAAT+TGG | 0.344147 | 8_4:+1781717 | Msa1306820:CDS |
| TGGATTGAGAGGAAAGAGAT+TGG | 0.350640 | 8_4:+1781104 | Msa1306820:CDS |
| GTGCTTTGGTCCTTCTCTCT+TGG | 0.365774 | 8_4:-1779102 | None:intergenic |
| AGACTTACCTTAACGTGTTT+AGG | 0.366426 | 8_4:-1781191 | None:intergenic |
| TCCAATACTCCTTTGAGAAC+CGG | 0.372772 | 8_4:-1779040 | None:intergenic |
| AAGCACCTGGTTCTCTTTCA+AGG | 0.377380 | 8_4:+1779119 | Msa1306820:CDS |
| ACCCAACTGTGTCTTGCCTT+GGG | 0.380722 | 8_4:-1780806 | None:intergenic |
| GTAAGAATATACTACGAGTT+TGG | 0.386299 | 8_4:+1781132 | Msa1306820:CDS |
| TGACAAGATTGTCACATAAT+GGG | 0.387697 | 8_4:+1781769 | Msa1306820:CDS |
| CTTGCCATTGGAGGTTATCC+TGG | 0.389584 | 8_4:+1781861 | Msa1306820:CDS |
| TCAGATACAGTCCTGCAAAT+AGG | 0.391218 | 8_4:-1780970 | None:intergenic |
| TGAAAGAGAACCAGGTGCTT+TGG | 0.397701 | 8_4:-1779116 | None:intergenic |
| TTTGCTGCTACTGATATTGC+TGG | 0.399338 | 8_4:-1780657 | None:intergenic |
| GTTGTTGTTGATAGCATAGA+AGG | 0.400557 | 8_4:-1778893 | None:intergenic |
| TTCTTTCAGGTACTTATTCA+AGG | 0.401325 | 8_4:-1781416 | None:intergenic |
| CAGCCATTTGGAATTTGCTT+CGG | 0.404070 | 8_4:+1781915 | Msa1306820:CDS |
| AAGGGAGTGTAACTAGTAGA+AGG | 0.404094 | 8_4:-1778874 | None:intergenic |
| TAAGCAATTTCAATCAACTT+TGG | 0.417086 | 8_4:-1781957 | None:intergenic |
| AGCTACACCTAAACACGTTA+AGG | 0.417453 | 8_4:+1781184 | Msa1306820:CDS |
| CTGAAAACACAAACGGAATT+GGG | 0.420174 | 8_4:+1781718 | Msa1306820:CDS |
| TGGTCACATTACAGGTCTAA+TGG | 0.420524 | 8_4:+1779313 | Msa1306820:CDS |
| GCTCAATTTCTAAAGAAAGA+TGG | 0.421932 | 8_4:+1781084 | Msa1306820:CDS |
| TATGAAAAGGATCAGCCATT+TGG | 0.422331 | 8_4:+1781903 | Msa1306820:CDS |
| CCCGGTTCTCAAAGGAGTAT+TGG | 0.431167 | 8_4:+1779039 | Msa1306820:CDS |
| GTTAACAAGTTAAGGAAAGC+TGG | 0.436209 | 8_4:+1779256 | Msa1306820:CDS |
| CAAGGATCATCCAATGTGTA+TGG | 0.439013 | 8_4:-1780618 | None:intergenic |
| CAACAAGAAACGCCCAAAAT+CGG | 0.439524 | 8_4:+1781483 | Msa1306820:CDS |
| AAGCTGGGGCTATTATATTA+GGG | 0.441388 | 8_4:+1779272 | Msa1306820:CDS |
| GCTTTCTTTGGAAGGCAAGT+TGG | 0.441871 | 8_4:-1778961 | None:intergenic |
| CAGGTGTAGTTAACAAGTTA+AGG | 0.444024 | 8_4:+1779248 | Msa1306820:CDS |
| TGATGCTGTGGTAATACCTT+TGG | 0.445327 | 8_4:+1781821 | Msa1306820:CDS |
| TCGTAGGAGAAACTTGAGTA+TGG | 0.447769 | 8_4:+1781675 | Msa1306820:intron |
| TTATCACCAACGTTGTTGAT+TGG | 0.450202 | 8_4:+1782158 | Msa1306820:three_prime_UTR |
| AGAAGAAGCAGTCGTATTCA+TGG | 0.453916 | 8_4:-1782061 | None:intergenic |
| TTTAGTAACATACTTGCCAT+TGG | 0.461482 | 8_4:+1781849 | Msa1306820:CDS |
| CCAATACTCCTTTGAGAACC+GGG | 0.467786 | 8_4:-1779039 | None:intergenic |
| TTTAAGCCAACTGTTGGTAC+TGG | 0.469071 | 8_4:-1782384 | None:intergenic |
| GCCCAAGGCAAGACACAGTT+GGG | 0.473558 | 8_4:+1780805 | Msa1306820:CDS |
| TTAACTACACCTGCATCTCT+TGG | 0.477941 | 8_4:-1779238 | None:intergenic |
| GTCGTATTCATGGGAATTGA+AGG | 0.479685 | 8_4:-1782051 | None:intergenic |
| GAGAGGAAAGAGATTGGGAG+TGG | 0.480046 | 8_4:+1781110 | Msa1306820:CDS |
| TCATGTATGAACTCAGTAGT+AGG | 0.484329 | 8_4:+1780732 | Msa1306820:CDS |
| GGTTCTCTTTCAAGGTTGCA+TGG | 0.486306 | 8_4:+1779127 | Msa1306820:CDS |
| ATCAAACTTCTAACTTTCGA+AGG | 0.491265 | 8_4:-1782019 | None:intergenic |
| TGATTGGTCTGAAAATCAAC+GGG | 0.491915 | 8_4:+1782174 | Msa1306820:three_prime_UTR |
| GGATTGAGAGGAAAGAGATT+GGG | 0.491920 | 8_4:+1781105 | Msa1306820:CDS |
| AATGGCAAGTATGTTACTAA+AGG | 0.492484 | 8_4:-1781847 | None:intergenic |
| CCATTTGGAATTTGCTTCGG+AGG | 0.497867 | 8_4:+1781918 | Msa1306820:CDS |
| TTAACAAGTTAAGGAAAGCT+GGG | 0.500893 | 8_4:+1779257 | Msa1306820:CDS |
| GATAAGTTCGCCAAATAAGA+TGG | 0.505472 | 8_4:+1782222 | Msa1306820:three_prime_UTR |
| ATTTGCTTCGGAGGTTTGAA+AGG | 0.508083 | 8_4:+1781927 | Msa1306820:CDS |
| AAAATTGTCGATGCCTGCTA+TGG | 0.508490 | 8_4:-1781013 | None:intergenic |
| TCAGTAGTGCCAAGAGATGC+AGG | 0.509284 | 8_4:+1779229 | Msa1306820:CDS |
| GCATCAAAGTATATCCCAAA+AGG | 0.517964 | 8_4:+1781054 | Msa1306820:CDS |
| TGTTAACTGCTTTCTTTGGA+AGG | 0.518372 | 8_4:-1778969 | None:intergenic |
| TGCAACCTTGAAAGAGAACC+AGG | 0.523206 | 8_4:-1779124 | None:intergenic |
| TCTAACTTTCGAAGGGGAGG+TGG | 0.524924 | 8_4:-1782011 | None:intergenic |
| CTAAAGAAAGATGGATTGAG+AGG | 0.525250 | 8_4:+1781093 | Msa1306820:CDS |
| AGTAACATACTTGCCATTGG+AGG | 0.525648 | 8_4:+1781852 | Msa1306820:CDS |
| TGGCCAAGATCTCATGCTGC+AGG | 0.534153 | 8_4:+1781695 | Msa1306820:CDS |
| TACGTTCTTGAAACCATAGC+AGG | 0.539094 | 8_4:+1781000 | Msa1306820:CDS |
| TGTTCCAGCAGGATATGAAA+AGG | 0.539625 | 8_4:+1781890 | Msa1306820:CDS |
| CCTCCGAAGCAAATTCCAAA+TGG | 0.542753 | 8_4:-1781918 | None:intergenic |
| GATCAAAGTTGCTTGCTCAA+AGG | 0.544559 | 8_4:-1781982 | None:intergenic |
| TGCTTCACCAGTGAAAAGCT+TGG | 0.546928 | 8_4:+1781444 | Msa1306820:CDS |
| ACTACTGAGTTCATACATGA+AGG | 0.549148 | 8_4:-1780729 | None:intergenic |
| TTTCAAGACTCGTGGAGTCA+TGG | 0.550445 | 8_4:+1778808 | None:intergenic |
| TGCTAGAGGTGGACAAGGAA+AGG | 0.550614 | 8_4:+1779354 | Msa1306820:CDS |
| GATAAGCTAAACACTACTGC+AGG | 0.551568 | 8_4:+1779187 | Msa1306820:CDS |
| TTGTTGTTGATAGCATAGAA+GGG | 0.551701 | 8_4:-1778892 | None:intergenic |
| TCAAACTTCTAACTTTCGAA+GGG | 0.553186 | 8_4:-1782018 | None:intergenic |
| GGCTAGTGGATTCTCAATCA+AGG | 0.555061 | 8_4:+1778919 | Msa1306820:CDS |
| AGCCCAAGGCAAGACACAGT+TGG | 0.555092 | 8_4:+1780804 | Msa1306820:CDS |
| CCTGCTGGAACAATCACTCC+AGG | 0.559268 | 8_4:-1781879 | None:intergenic |
| AGCTCACCAGTACCAACAGT+TGG | 0.559686 | 8_4:+1782378 | Msa1306820:three_prime_UTR |
| CCTGGAGTGATTGTTCCAGC+AGG | 0.563666 | 8_4:+1781879 | Msa1306820:CDS |
| GGAAGGCCACTTTGAGTGAG+TGG | 0.565034 | 8_4:+1779293 | Msa1306820:CDS |
| TTGATTGGTCTGAAAATCAA+CGG | 0.565999 | 8_4:+1782173 | Msa1306820:three_prime_UTR |
| TCAACAACAACCTTGGCTAG+TGG | 0.566924 | 8_4:+1778905 | Msa1306820:CDS |
| GATTCAACTTTCAAGACTCG+TGG | 0.569084 | 8_4:+1778800 | None:intergenic |
| CTAATGGAGCTCCTAGCGGT+TGG | 0.569270 | 8_4:+1779329 | Msa1306820:CDS |
| GTTGGTCTCACTAGTAGAGC+AGG | 0.569449 | 8_4:+1780768 | Msa1306820:CDS |
| CTGCAGGCTGAAAACACAAA+CGG | 0.569958 | 8_4:+1781711 | Msa1306820:CDS |
| ATCCAAAACCCGGTTCTCAA+AGG | 0.571970 | 8_4:+1779031 | Msa1306820:CDS |
| GATTGAGAATCCACTAGCCA+AGG | 0.574276 | 8_4:-1778915 | None:intergenic |
| TTTGCTTCGGAGGTTTGAAA+GGG | 0.576489 | 8_4:+1781928 | Msa1306820:CDS |
| GAAGAAGCAGTCGTATTCAT+GGG | 0.582811 | 8_4:-1782060 | None:intergenic |
| AAGAAATAAACTTGATGCTG+TGG | 0.585547 | 8_4:+1781809 | Msa1306820:CDS |
| CTACTGAGTTCATACATGAA+GGG | 0.587717 | 8_4:-1780728 | None:intergenic |
| GGTTCTCAAAGGAGTATTGG+AGG | 0.589717 | 8_4:+1779042 | Msa1306820:CDS |
| CCAAATTAAAATCCAAAACC+CGG | 0.591273 | 8_4:+1779021 | Msa1306820:CDS |
| CCTAGCGGTTGGAGTGCTAG+AGG | 0.596039 | 8_4:+1779340 | Msa1306820:CDS |
| TATGCTATCAACAACAACCT+TGG | 0.596156 | 8_4:+1778898 | Msa1306820:CDS |
| TTCAGACCAATCAACAACGT+TGG | 0.596436 | 8_4:-1782164 | None:intergenic |
| CCTCTAGCACTCCAACCGCT+AGG | 0.596959 | 8_4:-1779340 | None:intergenic |
| ATGTGACCACTCACTCAAAG+TGG | 0.600148 | 8_4:-1779299 | None:intergenic |
| TCGTATTCATGGGAATTGAA+GGG | 0.601400 | 8_4:-1782050 | None:intergenic |
| GAGAGAAGGACCAAAGCACC+TGG | 0.601549 | 8_4:+1779106 | Msa1306820:CDS |
| CACTCCAGGATAACCTCCAA+TGG | 0.611824 | 8_4:-1781865 | None:intergenic |
| TTCTTCAAAATCAGGCGAAG+AGG | 0.612164 | 8_4:+1781298 | Msa1306820:intron |
| ACTTCTAACTTTCGAAGGGG+AGG | 0.613064 | 8_4:-1782014 | None:intergenic |
| GTATTCATGGGAATTGAAGG+GGG | 0.613740 | 8_4:-1782048 | None:intergenic |
| GATCCTTGTGGATCAAGTAG+TGG | 0.622632 | 8_4:+1780633 | Msa1306820:CDS |
| TGGGGCTATTATATTAGGGA+AGG | 0.623176 | 8_4:+1779276 | Msa1306820:CDS |
| CGTATTCATGGGAATTGAAG+GGG | 0.624730 | 8_4:-1782049 | None:intergenic |
| AGGGCATAAAATGGAGCCAT+CGG | 0.628207 | 8_4:-1780709 | None:intergenic |
| TCAAAGTATATCCCAAAAGG+TGG | 0.630247 | 8_4:+1781057 | Msa1306820:CDS |
| TACACATTGGATGATCCTTG+TGG | 0.640179 | 8_4:+1780621 | Msa1306820:CDS |
| AGCGGTTGGAGTGCTAGAGG+TGG | 0.641094 | 8_4:+1779343 | Msa1306820:CDS |
| ATAAAGCTGACCAAGAGAGA+AGG | 0.642713 | 8_4:+1779092 | Msa1306820:CDS |
| CTACTAGTGAGACCAACCGT+TGG | 0.644995 | 8_4:-1780762 | None:intergenic |
| AATTTGGTGACTGTGTCACT+TGG | 0.645354 | 8_4:+1780678 | Msa1306820:CDS |
| GTAGGCATCAAACCAACGGT+TGG | 0.648249 | 8_4:+1780750 | Msa1306820:CDS |
| AAGAGAGCTAGCACATGCTG+AGG | 0.651382 | 8_4:-1778831 | None:intergenic |
| GTGTAGTTCCAATTAGCCCA+AGG | 0.651600 | 8_4:+1780790 | Msa1306820:CDS |
| TGGAGTGCTAGAGGTGGACA+AGG | 0.653815 | 8_4:+1779349 | Msa1306820:CDS |
| ATTCATGGGAATTGAAGGGG+GGG | 0.660747 | 8_4:-1782046 | None:intergenic |
| TAACAAGTTAAGGAAAGCTG+GGG | 0.661025 | 8_4:+1779258 | Msa1306820:CDS |
| TATTCATGGGAATTGAAGGG+GGG | 0.662700 | 8_4:-1782047 | None:intergenic |
| ATGTTACTAAAGGATGCCAA+AGG | 0.670433 | 8_4:-1781837 | None:intergenic |
| CAAACTTCTAACTTTCGAAG+GGG | 0.687115 | 8_4:-1782017 | None:intergenic |
| AGTAGTAGGCATCAAACCAA+CGG | 0.690720 | 8_4:+1780746 | Msa1306820:CDS |
| TGTGCAGAATCCATACACAT+TGG | 0.705508 | 8_4:+1780608 | Msa1306820:intron |
| AGGTCTAATGGAGCTCCTAG+CGG | 0.708611 | 8_4:+1779325 | Msa1306820:CDS |
| TCACTTGGTACTGAAACCGA+TGG | 0.716676 | 8_4:+1780693 | Msa1306820:CDS |
| GGTCCACTACTTGATCCACA+AGG | 0.733820 | 8_4:-1780636 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAATGTTCATAATATAT+AGG | - | chr8_4:1779881-1779900 | None:intergenic | 10.0% |
| !! | ATTATTCATATTACTTAAAT+AGG | + | chr8_4:1780151-1780170 | Msa1306820:intron | 10.0% |
| !!! | GTGACTATTTTTTTTTATTA+AGG | - | chr8_4:1779639-1779658 | None:intergenic | 15.0% |
| !!! | TTAAGCATATTTAACTTAAA+AGG | - | chr8_4:1780223-1780242 | None:intergenic | 15.0% |
| !!! | ATAAAGTTTTTCATCTTAAG+TGG | + | chr8_4:1779576-1779595 | Msa1306820:intron | 20.0% |
| !! | TCACTAATATAATATCCAAT+GGG | + | chr8_4:1779655-1779674 | Msa1306820:intron | 20.0% |
| !!! | TAATATATAGGCTTTTAAAC+AGG | - | chr8_4:1779869-1779888 | None:intergenic | 20.0% |
| !! | CAATTTGATCTAAGTTTAAA+TGG | + | chr8_4:1779907-1779926 | Msa1306820:intron | 20.0% |
| !!! | ATAATCAACTTGAGTTTTTA+GGG | + | chr8_4:1779969-1779988 | Msa1306820:intron | 20.0% |
| !!! | ACTTTTTTCTTAAATAGAGA+AGG | - | chr8_4:1780259-1780278 | None:intergenic | 20.0% |
| !!! | AAATATTCACTCACTTTTTT+TGG | - | chr8_4:1780492-1780511 | None:intergenic | 20.0% |
| !!! | AAAAAGTGAGTGAATATTTT+TGG | + | chr8_4:1780493-1780512 | Msa1306820:intron | 20.0% |
| !!! | CATAATGAAGTTATTACTTT+TGG | - | chr8_4:1780522-1780541 | None:intergenic | 20.0% |
| !! | ATTTAATAGCAAAATGTCTT+TGG | - | chr8_4:1780918-1780937 | None:intergenic | 20.0% |
| !!! | ATTATCAAATAATCGTTTTC+AGG | + | chr8_4:1782332-1782351 | Msa1306820:three_prime_UTR | 20.0% |
| !!! | TTTGGATTTTAATTTGGTTG+AGG | - | chr8_4:1779018-1779037 | None:intergenic | 25.0% |
| ! | ATGTTATCCTTAACCAAAAT+AGG | - | chr8_4:1779157-1779176 | None:intergenic | 25.0% |
| ! | GTCACTAATATAATATCCAA+TGG | + | chr8_4:1779654-1779673 | Msa1306820:intron | 25.0% |
| !!! | GCTTAGGCTTTAAAAAAATA+TGG | - | chr8_4:1779771-1779790 | None:intergenic | 25.0% |
| !! | CATAATCAACTTGAGTTTTT+AGG | + | chr8_4:1779968-1779987 | Msa1306820:intron | 25.0% |
| ! | TTCATATTACTTAAATAGGC+TGG | + | chr8_4:1780155-1780174 | Msa1306820:intron | 25.0% |
| ! | ATATGCTTAAAAAAAAGCCT+AGG | + | chr8_4:1780233-1780252 | Msa1306820:intron | 25.0% |
| ! | CTCTATTTAAGAAAAAAGTC+TGG | + | chr8_4:1780260-1780279 | Msa1306820:intron | 25.0% |
| !!! | TGTTGACTTAAAGAAAACAT+AGG | - | chr8_4:1780863-1780882 | None:intergenic | 25.0% |
| ! | CTTTATGTAACAAATAGGAA+TGG | - | chr8_4:1781606-1781625 | None:intergenic | 25.0% |
| ! | AATTGTTGTATAAACATCGT+AGG | + | chr8_4:1781659-1781678 | Msa1306820:intron | 25.0% |
| ! | TAAGCAATTTCAATCAACTT+TGG | - | chr8_4:1781960-1781979 | None:intergenic | 25.0% |
| !! | GTCAATATCTGTTACATTTT+GGG | - | chr8_4:1782254-1782273 | None:intergenic | 25.0% |
| !! | AGTCAATATCTGTTACATTT+TGG | - | chr8_4:1782255-1782274 | None:intergenic | 25.0% |
| !! | TTGTTGTTGATAGCATAGAA+GGG | - | chr8_4:1778895-1778914 | None:intergenic | 30.0% |
| TTGATGTTAACTGCTTTCTT+TGG | - | chr8_4:1778976-1778995 | None:intergenic | 30.0% | |
| CCAAATTAAAATCCAAAACC+CGG | + | chr8_4:1779021-1779040 | Msa1306820:CDS | 30.0% | |
| !!! | TGGAATACCTATTTTGGTTA+AGG | + | chr8_4:1779147-1779166 | Msa1306820:CDS | 30.0% |
| TTAACAAGTTAAGGAAAGCT+GGG | + | chr8_4:1779257-1779276 | Msa1306820:CDS | 30.0% | |
| ! | TACTTAATTTGACCATGATC+TGG | + | chr8_4:1779399-1779418 | Msa1306820:intron | 30.0% |
| !!! | TTTATCCCTCACTCTTTTTT+GGG | - | chr8_4:1779544-1779563 | None:intergenic | 30.0% |
| !!! | ATTTATCCCTCACTCTTTTT+TGG | - | chr8_4:1779545-1779564 | None:intergenic | 30.0% |
| ATCTTAAGTGGTAGAGTTAT+AGG | + | chr8_4:1779588-1779607 | Msa1306820:intron | 30.0% | |
| AATATAATATCCAATGGGTG+TGG | + | chr8_4:1779660-1779679 | Msa1306820:intron | 30.0% | |
| !! | AGGCTTTAAAAAAATATGGC+AGG | - | chr8_4:1779767-1779786 | None:intergenic | 30.0% |
| !!! | ATTTTTTTAAAGCCTAAGCC+TGG | + | chr8_4:1779772-1779791 | Msa1306820:intron | 30.0% |
| AAAAGCCTCTTAAGCTTATT+AGG | - | chr8_4:1780181-1780200 | None:intergenic | 30.0% | |
| ! | CATATTTAACTTAAAAGGCC+AGG | - | chr8_4:1780218-1780237 | None:intergenic | 30.0% |
| ! | AATCTCTTCTTAGGTGTTTT+AGG | - | chr8_4:1780413-1780432 | None:intergenic | 30.0% |
| !!! | ATTCACTCACTTTTTTTGGT+TGG | - | chr8_4:1780488-1780507 | None:intergenic | 30.0% |
| !!! | AAGTGAGTGAATATTTTTGG+AGG | + | chr8_4:1780496-1780515 | Msa1306820:intron | 30.0% |
| ATACTTAAGTTCCTATGAGA+AGG | - | chr8_4:1780545-1780564 | None:intergenic | 30.0% | |
| CATAGGAACTTAAGTATGAA+TGG | + | chr8_4:1780548-1780567 | Msa1306820:intron | 30.0% | |
| !! | ATGAATGGTTCTAGAAAATG+AGG | + | chr8_4:1780563-1780582 | Msa1306820:intron | 30.0% |
| AATATCAGTAGCAGCAAATT+TGG | + | chr8_4:1780662-1780681 | Msa1306820:CDS | 30.0% | |
| CCAATTTGCCACATATATAT+AGG | - | chr8_4:1780835-1780854 | None:intergenic | 30.0% | |
| CCTATATATATGTGGCAAAT+TGG | + | chr8_4:1780832-1780851 | Msa1306820:intron | 30.0% | |
| ! | ATGTGTAAACATTGATTGTG+TGG | + | chr8_4:1780936-1780955 | Msa1306820:intron | 30.0% |
| !!! | TTGATTGTGTGGTTTTGTAT+AGG | + | chr8_4:1780947-1780966 | Msa1306820:intron | 30.0% |
| ! | GCTCAATTTCTAAAGAAAGA+TGG | + | chr8_4:1781084-1781103 | Msa1306820:CDS | 30.0% |
| GTAAGAATATACTACGAGTT+TGG | + | chr8_4:1781132-1781151 | Msa1306820:CDS | 30.0% | |
| TGTGTACTTTCTTCAAAATC+AGG | + | chr8_4:1781290-1781309 | Msa1306820:intron | 30.0% | |
| ! | TTCTTTCAGGTACTTATTCA+AGG | - | chr8_4:1781419-1781438 | None:intergenic | 30.0% |
| !!! | ACAATATACTCACCGATTTT+GGG | - | chr8_4:1781498-1781517 | None:intergenic | 30.0% |
| !!! | TACAATATACTCACCGATTT+TGG | - | chr8_4:1781499-1781518 | None:intergenic | 30.0% |
| CTGGACTTTATGTAACAAAT+AGG | - | chr8_4:1781611-1781630 | None:intergenic | 30.0% | |
| ATGACAAGATTGTCACATAA+TGG | + | chr8_4:1781768-1781787 | Msa1306820:CDS | 30.0% | |
| TGACAAGATTGTCACATAAT+GGG | + | chr8_4:1781769-1781788 | Msa1306820:CDS | 30.0% | |
| AAGAAATAAACTTGATGCTG+TGG | + | chr8_4:1781809-1781828 | Msa1306820:CDS | 30.0% | |
| AATGGCAAGTATGTTACTAA+AGG | - | chr8_4:1781850-1781869 | None:intergenic | 30.0% | |
| TTTAGTAACATACTTGCCAT+TGG | + | chr8_4:1781849-1781868 | Msa1306820:CDS | 30.0% | |
| TCAAACTTCTAACTTTCGAA+GGG | - | chr8_4:1782021-1782040 | None:intergenic | 30.0% | |
| ATCAAACTTCTAACTTTCGA+AGG | - | chr8_4:1782022-1782041 | None:intergenic | 30.0% | |
| !! | TTGATTGGTCTGAAAATCAA+CGG | + | chr8_4:1782173-1782192 | Msa1306820:three_prime_UTR | 30.0% |
| !!! | TCAAATAATCGTTTTCAGGT+TGG | + | chr8_4:1782336-1782355 | Msa1306820:three_prime_UTR | 30.0% |
| !!! | CAAATAATCGTTTTCAGGTT+GGG | + | chr8_4:1782337-1782356 | Msa1306820:three_prime_UTR | 30.0% |
| !! | GTTGTTGTTGATAGCATAGA+AGG | - | chr8_4:1778896-1778915 | None:intergenic | 35.0% |
| TATGCTATCAACAACAACCT+TGG | + | chr8_4:1778898-1778917 | Msa1306820:CDS | 35.0% | |
| TGTTAACTGCTTTCTTTGGA+AGG | - | chr8_4:1778972-1778991 | None:intergenic | 35.0% | |
| !!! | CCGGGTTTTGGATTTTAATT+TGG | - | chr8_4:1779024-1779043 | None:intergenic | 35.0% |
| ! | GTTGCATGGAATACCTATTT+TGG | + | chr8_4:1779141-1779160 | Msa1306820:CDS | 35.0% |
| CAGGTGTAGTTAACAAGTTA+AGG | + | chr8_4:1779248-1779267 | Msa1306820:CDS | 35.0% | |
| GTTAACAAGTTAAGGAAAGC+TGG | + | chr8_4:1779256-1779275 | Msa1306820:CDS | 35.0% | |
| TAACAAGTTAAGGAAAGCTG+GGG | + | chr8_4:1779258-1779277 | Msa1306820:CDS | 35.0% | |
| AAAGCTGGGGCTATTATATT+AGG | + | chr8_4:1779271-1779290 | Msa1306820:CDS | 35.0% | |
| AAGCTGGGGCTATTATATTA+GGG | + | chr8_4:1779272-1779291 | Msa1306820:CDS | 35.0% | |
| TGAATTGAAAAGCCAGATCA+TGG | - | chr8_4:1779414-1779433 | None:intergenic | 35.0% | |
| !! | GGACTTTTTGATAGCTTATG+AGG | + | chr8_4:1779613-1779632 | Msa1306820:intron | 35.0% |
| TTGTTAACCACTGAGCTTAT+CGG | + | chr8_4:1779689-1779708 | Msa1306820:intron | 35.0% | |
| TTCTTAAATAGAGAAGGCCT+AGG | - | chr8_4:1780253-1780272 | None:intergenic | 35.0% | |
| TTTAAGAAAAAAGTCTGGCC+TGG | + | chr8_4:1780265-1780284 | Msa1306820:intron | 35.0% | |
| ATCCAGACTAATCTCTTCTT+AGG | - | chr8_4:1780422-1780441 | None:intergenic | 35.0% | |
| !!! | ACTCACTTTTTTTGGTTGGA+AGG | - | chr8_4:1780484-1780503 | None:intergenic | 35.0% |
| ACTTCATTATGCCTTCTCAT+AGG | + | chr8_4:1780531-1780550 | Msa1306820:intron | 35.0% | |
| ! | CATACATGAAGGGCATAAAA+TGG | - | chr8_4:1780721-1780740 | None:intergenic | 35.0% |
| CTACTGAGTTCATACATGAA+GGG | - | chr8_4:1780731-1780750 | None:intergenic | 35.0% | |
| ACTACTGAGTTCATACATGA+AGG | - | chr8_4:1780732-1780751 | None:intergenic | 35.0% | |
| TCATGTATGAACTCAGTAGT+AGG | + | chr8_4:1780732-1780751 | Msa1306820:CDS | 35.0% | |
| TGGGTAAGCCTATATATATG+TGG | + | chr8_4:1780824-1780843 | Msa1306820:intron | 35.0% | |
| ! | ATAGCAAAATGTCTTTGGAG+AGG | - | chr8_4:1780913-1780932 | None:intergenic | 35.0% |
| ! | TTTTGTATAGGCCTATTTGC+AGG | + | chr8_4:1780959-1780978 | Msa1306820:intron | 35.0% |
| !!! | AGGCATCGACAATTTTGATA+AGG | + | chr8_4:1781020-1781039 | Msa1306820:CDS | 35.0% |
| GCATCAAAGTATATCCCAAA+AGG | + | chr8_4:1781054-1781073 | Msa1306820:CDS | 35.0% | |
| TCAAAGTATATCCCAAAAGG+TGG | + | chr8_4:1781057-1781076 | Msa1306820:CDS | 35.0% | |
| !! | CTAAAGAAAGATGGATTGAG+AGG | + | chr8_4:1781093-1781112 | Msa1306820:CDS | 35.0% |
| GTTTGGAAATGACACATTAC+TGG | + | chr8_4:1781149-1781168 | Msa1306820:CDS | 35.0% | |
| AGACTTACCTTAACGTGTTT+AGG | - | chr8_4:1781194-1781213 | None:intergenic | 35.0% | |
| GTGAAGCAACTAATTCTTTC+AGG | - | chr8_4:1781432-1781451 | None:intergenic | 35.0% | |
| CTGAAAACACAAACGGAATT+GGG | + | chr8_4:1781718-1781737 | Msa1306820:CDS | 35.0% | |
| ATGTTACTAAAGGATGCCAA+AGG | - | chr8_4:1781840-1781859 | None:intergenic | 35.0% | |
| TATGAAAAGGATCAGCCATT+TGG | + | chr8_4:1781903-1781922 | Msa1306820:CDS | 35.0% | |
| CAAACTTCTAACTTTCGAAG+GGG | - | chr8_4:1782020-1782039 | None:intergenic | 35.0% | |
| TCGTATTCATGGGAATTGAA+GGG | - | chr8_4:1782053-1782072 | None:intergenic | 35.0% | |
| TTATCACCAACGTTGTTGAT+TGG | + | chr8_4:1782158-1782177 | Msa1306820:three_prime_UTR | 35.0% | |
| !! | TGATTGGTCTGAAAATCAAC+GGG | + | chr8_4:1782174-1782193 | Msa1306820:three_prime_UTR | 35.0% |
| TGAAAATCAACGGGACAATT+AGG | + | chr8_4:1782183-1782202 | Msa1306820:three_prime_UTR | 35.0% | |
| GATAAGTTCGCCAAATAAGA+TGG | + | chr8_4:1782222-1782241 | Msa1306820:three_prime_UTR | 35.0% | |
| TGGGTTAAAGCCATCTTATT+TGG | - | chr8_4:1782235-1782254 | None:intergenic | 35.0% | |
| ! | AAGGGAGTGTAACTAGTAGA+AGG | - | chr8_4:1778877-1778896 | None:intergenic | 40.0% |
| ! | TCCAATACTCCTTTGAGAAC+CGG | - | chr8_4:1779043-1779062 | None:intergenic | 40.0% |
| ATAAAGCTGACCAAGAGAGA+AGG | + | chr8_4:1779092-1779111 | Msa1306820:CDS | 40.0% | |
| GATAAGCTAAACACTACTGC+AGG | + | chr8_4:1779187-1779206 | Msa1306820:CDS | 40.0% | |
| TTAACTACACCTGCATCTCT+TGG | - | chr8_4:1779241-1779260 | None:intergenic | 40.0% | |
| TGGGGCTATTATATTAGGGA+AGG | + | chr8_4:1779276-1779295 | Msa1306820:CDS | 40.0% | |
| TGGTCACATTACAGGTCTAA+TGG | + | chr8_4:1779313-1779332 | Msa1306820:CDS | 40.0% | |
| TAAGTGGTAGAGTTATAGGC+TGG | + | chr8_4:1779592-1779611 | Msa1306820:intron | 40.0% | |
| !! | AGCTTAAGAGGCTTTTTGAG+AGG | + | chr8_4:1780185-1780204 | Msa1306820:intron | 40.0% |
| ATCTCCGCTGAACACATTAA+TGG | + | chr8_4:1780367-1780386 | Msa1306820:intron | 40.0% | |
| CTCACCATTAATGTGTTCAG+CGG | - | chr8_4:1780374-1780393 | None:intergenic | 40.0% | |
| GCTGAACACATTAATGGTGA+GGG | + | chr8_4:1780373-1780392 | Msa1306820:intron | 40.0% | |
| CTGAACACATTAATGGTGAG+GGG | + | chr8_4:1780374-1780393 | Msa1306820:intron | 40.0% | |
| ! | CACCTAAGAAGAGATTAGTC+TGG | + | chr8_4:1780417-1780436 | Msa1306820:intron | 40.0% |
| TAGTCTGGATATCAGTCCAA+TGG | + | chr8_4:1780432-1780451 | Msa1306820:intron | 40.0% | |
| TGTGCAGAATCCATACACAT+TGG | + | chr8_4:1780608-1780627 | Msa1306820:intron | 40.0% | |
| CAAGGATCATCCAATGTGTA+TGG | - | chr8_4:1780621-1780640 | None:intergenic | 40.0% | |
| TACACATTGGATGATCCTTG+TGG | + | chr8_4:1780621-1780640 | Msa1306820:CDS | 40.0% | |
| TTTGCTGCTACTGATATTGC+TGG | - | chr8_4:1780660-1780679 | None:intergenic | 40.0% | |
| ! | AATTTGGTGACTGTGTCACT+TGG | + | chr8_4:1780678-1780697 | Msa1306820:CDS | 40.0% |
| AGTAGTAGGCATCAAACCAA+CGG | + | chr8_4:1780746-1780765 | Msa1306820:CDS | 40.0% | |
| TCAGATACAGTCCTGCAAAT+AGG | - | chr8_4:1780973-1780992 | None:intergenic | 40.0% | |
| TACGTTCTTGAAACCATAGC+AGG | + | chr8_4:1781000-1781019 | Msa1306820:CDS | 40.0% | |
| AAAATTGTCGATGCCTGCTA+TGG | - | chr8_4:1781016-1781035 | None:intergenic | 40.0% | |
| ! | ATTGAGCATAGCCACCTTTT+GGG | - | chr8_4:1781071-1781090 | None:intergenic | 40.0% |
| ! | AATTGAGCATAGCCACCTTT+TGG | - | chr8_4:1781072-1781091 | None:intergenic | 40.0% |
| TGGATTGAGAGGAAAGAGAT+TGG | + | chr8_4:1781104-1781123 | Msa1306820:CDS | 40.0% | |
| GGATTGAGAGGAAAGAGATT+GGG | + | chr8_4:1781105-1781124 | Msa1306820:CDS | 40.0% | |
| AGCTACACCTAAACACGTTA+AGG | + | chr8_4:1781184-1781203 | Msa1306820:CDS | 40.0% | |
| TTCTTCAAAATCAGGCGAAG+AGG | + | chr8_4:1781298-1781317 | Msa1306820:intron | 40.0% | |
| ! | TTTTGGGCGTTTCTTGTTGA+AGG | - | chr8_4:1781482-1781501 | None:intergenic | 40.0% |
| CAACAAGAAACGCCCAAAAT+CGG | + | chr8_4:1781483-1781502 | Msa1306820:CDS | 40.0% | |
| TCGTGATCAATGTTCATAGC+TGG | - | chr8_4:1781630-1781649 | None:intergenic | 40.0% | |
| TCGTAGGAGAAACTTGAGTA+TGG | + | chr8_4:1781675-1781694 | Msa1306820:intron | 40.0% | |
| GCTGAAAACACAAACGGAAT+TGG | + | chr8_4:1781717-1781736 | Msa1306820:CDS | 40.0% | |
| TGATGCTGTGGTAATACCTT+TGG | + | chr8_4:1781821-1781840 | Msa1306820:CDS | 40.0% | |
| AGTAACATACTTGCCATTGG+AGG | + | chr8_4:1781852-1781871 | Msa1306820:CDS | 40.0% | |
| TGTTCCAGCAGGATATGAAA+AGG | + | chr8_4:1781890-1781909 | Msa1306820:CDS | 40.0% | |
| ! | TGATCCTTTTCATATCCTGC+TGG | - | chr8_4:1781897-1781916 | None:intergenic | 40.0% |
| ! | CAGCCATTTGGAATTTGCTT+CGG | + | chr8_4:1781915-1781934 | Msa1306820:CDS | 40.0% |
| ATTTGCTTCGGAGGTTTGAA+AGG | + | chr8_4:1781927-1781946 | Msa1306820:CDS | 40.0% | |
| TTTGCTTCGGAGGTTTGAAA+GGG | + | chr8_4:1781928-1781947 | Msa1306820:CDS | 40.0% | |
| GATCAAAGTTGCTTGCTCAA+AGG | - | chr8_4:1781985-1782004 | None:intergenic | 40.0% | |
| TATTCATGGGAATTGAAGGG+GGG | - | chr8_4:1782050-1782069 | None:intergenic | 40.0% | |
| GTATTCATGGGAATTGAAGG+GGG | - | chr8_4:1782051-1782070 | None:intergenic | 40.0% | |
| CGTATTCATGGGAATTGAAG+GGG | - | chr8_4:1782052-1782071 | None:intergenic | 40.0% | |
| GTCGTATTCATGGGAATTGA+AGG | - | chr8_4:1782054-1782073 | None:intergenic | 40.0% | |
| GAAGAAGCAGTCGTATTCAT+GGG | - | chr8_4:1782063-1782082 | None:intergenic | 40.0% | |
| AGAAGAAGCAGTCGTATTCA+TGG | - | chr8_4:1782064-1782083 | None:intergenic | 40.0% | |
| TTCAGACCAATCAACAACGT+TGG | - | chr8_4:1782167-1782186 | None:intergenic | 40.0% | |
| !!! | ATAATCGTTTTCAGGTTGGG+CGG | + | chr8_4:1782340-1782359 | Msa1306820:three_prime_UTR | 40.0% |
| TCAACAACAACCTTGGCTAG+TGG | + | chr8_4:1778905-1778924 | Msa1306820:CDS | 45.0% | |
| GATTGAGAATCCACTAGCCA+AGG | - | chr8_4:1778918-1778937 | None:intergenic | 45.0% | |
| !! | GGCTAGTGGATTCTCAATCA+AGG | + | chr8_4:1778919-1778938 | Msa1306820:CDS | 45.0% |
| ! | GCTTTCTTTGGAAGGCAAGT+TGG | - | chr8_4:1778964-1778983 | None:intergenic | 45.0% |
| ATCCAAAACCCGGTTCTCAA+AGG | + | chr8_4:1779031-1779050 | Msa1306820:CDS | 45.0% | |
| ! | CCAATACTCCTTTGAGAACC+GGG | - | chr8_4:1779042-1779061 | None:intergenic | 45.0% |
| !! | GGTTCTCAAAGGAGTATTGG+AGG | + | chr8_4:1779042-1779061 | Msa1306820:CDS | 45.0% |
| TCTGCTTGTGCTAATGCATC+TGG | - | chr8_4:1779073-1779092 | None:intergenic | 45.0% | |
| TGAAAGAGAACCAGGTGCTT+TGG | - | chr8_4:1779119-1779138 | None:intergenic | 45.0% | |
| ! | AAGCACCTGGTTCTCTTTCA+AGG | + | chr8_4:1779119-1779138 | Msa1306820:CDS | 45.0% |
| TGCAACCTTGAAAGAGAACC+AGG | - | chr8_4:1779127-1779146 | None:intergenic | 45.0% | |
| GGTTCTCTTTCAAGGTTGCA+TGG | + | chr8_4:1779127-1779146 | Msa1306820:CDS | 45.0% | |
| ! | GCAGGTTCTTTTGCATTGCT+TGG | + | chr8_4:1779205-1779224 | Msa1306820:CDS | 45.0% |
| ATGTGACCACTCACTCAAAG+TGG | - | chr8_4:1779302-1779321 | None:intergenic | 45.0% | |
| TGAGTGAGTGGTCACATTAC+AGG | + | chr8_4:1779305-1779324 | Msa1306820:CDS | 45.0% | |
| !!! | ACTCTTTTTTGGGACAGCTC+TGG | - | chr8_4:1779534-1779553 | None:intergenic | 45.0% |
| AGCTGTCCCAAAAAAGAGTG+AGG | + | chr8_4:1779535-1779554 | Msa1306820:intron | 45.0% | |
| GCTGTCCCAAAAAAGAGTGA+GGG | + | chr8_4:1779536-1779555 | Msa1306820:intron | 45.0% | |
| ACAAACTGAACCACACCCAT+TGG | - | chr8_4:1779673-1779692 | None:intergenic | 45.0% | |
| TAACCACTGAGCTTATCGGT+AGG | + | chr8_4:1779693-1779712 | Msa1306820:intron | 45.0% | |
| AACCACTGAGCTTATCGGTA+GGG | + | chr8_4:1779694-1779713 | Msa1306820:intron | 45.0% | |
| TTATCGGTAGGGATGGGAAT+AGG | + | chr8_4:1779705-1779724 | Msa1306820:intron | 45.0% | |
| AAATATGGCAGGCCAGACTT+AGG | - | chr8_4:1779756-1779775 | None:intergenic | 45.0% | |
| CTAAAAAGTAGGCCTGTGAC+AGG | - | chr8_4:1779805-1779824 | None:intergenic | 45.0% | |
| !!! | CTGTCACAGGCCTACTTTTT+AGG | + | chr8_4:1779803-1779822 | Msa1306820:intron | 45.0% |
| CAGACTCAGGCCTAAAAAGT+AGG | - | chr8_4:1779816-1779835 | None:intergenic | 45.0% | |
| !!! | CTACTTTTTAGGCCTGAGTC+TGG | + | chr8_4:1779814-1779833 | Msa1306820:intron | 45.0% |
| ! | GGCCTTCTGAAAGTCTGATA+CGG | + | chr8_4:1779835-1779854 | Msa1306820:intron | 45.0% |
| GACCGTATCAGACTTTCAGA+AGG | - | chr8_4:1779840-1779859 | None:intergenic | 45.0% | |
| ! | GCTGGCCTAATAAGCTTAAG+AGG | + | chr8_4:1780173-1780192 | Msa1306820:intron | 45.0% |
| CGCTGAACACATTAATGGTG+AGG | + | chr8_4:1780372-1780391 | Msa1306820:intron | 45.0% | |
| ! | TTCCACTAGCTTCAGTCCAT+TGG | - | chr8_4:1780451-1780470 | None:intergenic | 45.0% |
| GATCCTTGTGGATCAAGTAG+TGG | + | chr8_4:1780633-1780652 | Msa1306820:CDS | 45.0% | |
| ! | TCACTTGGTACTGAAACCGA+TGG | + | chr8_4:1780693-1780712 | Msa1306820:CDS | 45.0% |
| AGGGCATAAAATGGAGCCAT+CGG | - | chr8_4:1780712-1780731 | None:intergenic | 45.0% | |
| GTGTAGTTCCAATTAGCCCA+AGG | + | chr8_4:1780790-1780809 | Msa1306820:CDS | 45.0% | |
| TGCTTCACCAGTGAAAAGCT+TGG | + | chr8_4:1781444-1781463 | Msa1306820:CDS | 45.0% | |
| ! | ACATCTGCCAAGCTTTTCAC+TGG | - | chr8_4:1781454-1781473 | None:intergenic | 45.0% |
| CTTACAGTCGTGAAGCAAAC+TGG | - | chr8_4:1781548-1781567 | None:intergenic | 45.0% | |
| CTGCAGGCTGAAAACACAAA+CGG | + | chr8_4:1781711-1781730 | Msa1306820:CDS | 45.0% | |
| CCTCCGAAGCAAATTCCAAA+TGG | - | chr8_4:1781921-1781940 | None:intergenic | 45.0% | |
| ! | CCATTTGGAATTTGCTTCGG+AGG | + | chr8_4:1781918-1781937 | Msa1306820:CDS | 45.0% |
| ACTTCTAACTTTCGAAGGGG+AGG | - | chr8_4:1782017-1782036 | None:intergenic | 45.0% | |
| ATTCATGGGAATTGAAGGGG+GGG | - | chr8_4:1782049-1782068 | None:intergenic | 45.0% | |
| AAGAGAGCTAGCACATGCTG+AGG | - | chr8_4:1778834-1778853 | None:intergenic | 50.0% | |
| !! | CTCCTTTGAGAACCGGGTTT+TGG | - | chr8_4:1779036-1779055 | None:intergenic | 50.0% |
| ! | CCCGGTTCTCAAAGGAGTAT+TGG | + | chr8_4:1779039-1779058 | Msa1306820:CDS | 50.0% |
| GTGCTTTGGTCCTTCTCTCT+TGG | - | chr8_4:1779105-1779124 | None:intergenic | 50.0% | |
| TCAGTAGTGCCAAGAGATGC+AGG | + | chr8_4:1779229-1779248 | Msa1306820:CDS | 50.0% | |
| AGGTCTAATGGAGCTCCTAG+CGG | + | chr8_4:1779325-1779344 | Msa1306820:CDS | 50.0% | |
| TGCTAGAGGTGGACAAGGAA+AGG | + | chr8_4:1779354-1779373 | Msa1306820:CDS | 50.0% | |
| ATCCCTACCGATAAGCTCAG+TGG | - | chr8_4:1779699-1779718 | None:intergenic | 50.0% | |
| ACTGAGCTTATCGGTAGGGA+TGG | + | chr8_4:1779698-1779717 | Msa1306820:intron | 50.0% | |
| CTGAGCTTATCGGTAGGGAT+GGG | + | chr8_4:1779699-1779718 | Msa1306820:intron | 50.0% | |
| ACTTTCAGAAGGCCAGACTC+AGG | - | chr8_4:1779829-1779848 | None:intergenic | 50.0% | |
| AACTTAAAAGGCCAGGCCAC+AGG | - | chr8_4:1780211-1780230 | None:intergenic | 50.0% | |
| !! | GTCCAATGGACTGAAGCTAG+TGG | + | chr8_4:1780446-1780465 | Msa1306820:intron | 50.0% |
| GGTCCACTACTTGATCCACA+AGG | - | chr8_4:1780639-1780658 | None:intergenic | 50.0% | |
| GTAGGCATCAAACCAACGGT+TGG | + | chr8_4:1780750-1780769 | Msa1306820:CDS | 50.0% | |
| CTACTAGTGAGACCAACCGT+TGG | - | chr8_4:1780765-1780784 | None:intergenic | 50.0% | |
| ! | GTTGGTCTCACTAGTAGAGC+AGG | + | chr8_4:1780768-1780787 | Msa1306820:CDS | 50.0% |
| GTGTCTTGCCTTGGGCTAAT+TGG | - | chr8_4:1780801-1780820 | None:intergenic | 50.0% | |
| ACCCAACTGTGTCTTGCCTT+GGG | - | chr8_4:1780809-1780828 | None:intergenic | 50.0% | |
| TACCCAACTGTGTCTTGCCT+TGG | - | chr8_4:1780810-1780829 | None:intergenic | 50.0% | |
| GAGAGGAAAGAGATTGGGAG+TGG | + | chr8_4:1781110-1781129 | Msa1306820:CDS | 50.0% | |
| CTTGCCATTGGAGGTTATCC+TGG | + | chr8_4:1781861-1781880 | Msa1306820:CDS | 50.0% | |
| CACTCCAGGATAACCTCCAA+TGG | - | chr8_4:1781868-1781887 | None:intergenic | 50.0% | |
| TCTAACTTTCGAAGGGGAGG+TGG | - | chr8_4:1782014-1782033 | None:intergenic | 50.0% | |
| AGCTCACCAGTACCAACAGT+TGG | + | chr8_4:1782378-1782397 | Msa1306820:three_prime_UTR | 50.0% | |
| ! | GAGAGAAGGACCAAAGCACC+TGG | + | chr8_4:1779106-1779125 | Msa1306820:CDS | 55.0% |
| ! | GGAAGGCCACTTTGAGTGAG+TGG | + | chr8_4:1779293-1779312 | Msa1306820:CDS | 55.0% |
| CTAATGGAGCTCCTAGCGGT+TGG | + | chr8_4:1779329-1779348 | Msa1306820:CDS | 55.0% | |
| ! | TGGAGTGCTAGAGGTGGACA+AGG | + | chr8_4:1779349-1779368 | Msa1306820:CDS | 55.0% |
| GGTAGGGATGGGAATAGGCT+AGG | + | chr8_4:1779710-1779729 | Msa1306820:intron | 55.0% | |
| GACTTAGGCCTTGCAAAGCC+TGG | - | chr8_4:1779741-1779760 | None:intergenic | 55.0% | |
| GGCTTTGCAAGGCCTAAGTC+TGG | + | chr8_4:1779741-1779760 | Msa1306820:intron | 55.0% | |
| TAAAGCCTAAGCCTGGCCTG+CGG | + | chr8_4:1779779-1779798 | Msa1306820:intron | 55.0% | |
| !! | GAGGCTTTTTGAGAGGCCTG+TGG | + | chr8_4:1780192-1780211 | Msa1306820:intron | 55.0% |
| !! | TTTTTGAGAGGCCTGTGGCC+TGG | + | chr8_4:1780197-1780216 | Msa1306820:intron | 55.0% |
| ACAAGGGATGGGAATAGGCC+AGG | - | chr8_4:1780328-1780347 | None:intergenic | 55.0% | |
| GGCCTATTCCCATCCCTTGT+CGG | + | chr8_4:1780328-1780347 | Msa1306820:intron | 55.0% | |
| GCCTATTCCCATCCCTTGTC+GGG | + | chr8_4:1780329-1780348 | Msa1306820:intron | 55.0% | |
| CCTATTCCCATCCCTTGTCG+GGG | + | chr8_4:1780330-1780349 | Msa1306820:intron | 55.0% | |
| GAAGTTCCCCGACAAGGGAT+GGG | - | chr8_4:1780339-1780358 | None:intergenic | 55.0% | |
| ACTGCGAAGTTCCCCGACAA+GGG | - | chr8_4:1780344-1780363 | None:intergenic | 55.0% | |
| AACTGCGAAGTTCCCCGACA+AGG | - | chr8_4:1780345-1780364 | None:intergenic | 55.0% | |
| AGCCCAAGGCAAGACACAGT+TGG | + | chr8_4:1780804-1780823 | Msa1306820:CDS | 55.0% | |
| GCCCAAGGCAAGACACAGTT+GGG | + | chr8_4:1780805-1780824 | Msa1306820:CDS | 55.0% | |
| TGGCCAAGATCTCATGCTGC+AGG | + | chr8_4:1781695-1781714 | Msa1306820:CDS | 55.0% | |
| CAGCCTGCAGCATGAGATCT+TGG | - | chr8_4:1781701-1781720 | None:intergenic | 55.0% | |
| CCTGCTGGAACAATCACTCC+AGG | - | chr8_4:1781882-1781901 | None:intergenic | 55.0% | |
| CCTGGAGTGATTGTTCCAGC+AGG | + | chr8_4:1781879-1781898 | Msa1306820:CDS | 55.0% | |
| CCTCTAGCACTCCAACCGCT+AGG | - | chr8_4:1779343-1779362 | None:intergenic | 60.0% | |
| ! | CCTAGCGGTTGGAGTGCTAG+AGG | + | chr8_4:1779340-1779359 | Msa1306820:CDS | 60.0% |
| ! | AGCGGTTGGAGTGCTAGAGG+TGG | + | chr8_4:1779343-1779362 | Msa1306820:CDS | 60.0% |
| GGAATAGGCTAGGCCAAGCC+AGG | + | chr8_4:1779720-1779739 | Msa1306820:intron | 60.0% | |
| AGGCCAAGCCAGGCTTTGCA+AGG | + | chr8_4:1779730-1779749 | Msa1306820:intron | 60.0% | |
| AGGCCTTGCAAAGCCTGGCT+TGG | - | chr8_4:1779736-1779755 | None:intergenic | 60.0% | |
| CCCCGACAAGGGATGGGAAT+AGG | - | chr8_4:1780333-1780352 | None:intergenic | 60.0% | |
| CGAAGTTCCCCGACAAGGGA+TGG | - | chr8_4:1780340-1780359 | None:intergenic | 60.0% | |
| AGTCTGGCCTGGCCTGTCGT+AGG | + | chr8_4:1780276-1780295 | Msa1306820:intron | 65.0% | |
| CCTACGGCCTAGCCTACGAC+AGG | - | chr8_4:1780291-1780310 | None:intergenic | 65.0% | |
| CCTGTCGTAGGCTAGGCCGT+AGG | + | chr8_4:1780288-1780307 | Msa1306820:intron | 65.0% | |
| ATAGGCCAGGCCGGCCTACA+GGG | - | chr8_4:1780315-1780334 | None:intergenic | 65.0% | |
| AATAGGCCAGGCCGGCCTAC+AGG | - | chr8_4:1780316-1780335 | None:intergenic | 65.0% | |
| GGGATGGGAATAGGCCAGGC+CGG | - | chr8_4:1780324-1780343 | None:intergenic | 65.0% | |
| ACAGGCCGCAGGCCAGGCTT+AGG | - | chr8_4:1779787-1779806 | None:intergenic | 70.0% | |
| GTAGGCCTGTGACAGGCCGC+AGG | - | chr8_4:1779798-1779817 | None:intergenic | 70.0% | |
| GGCCTGGCCTGTCGTAGGCT+AGG | + | chr8_4:1780281-1780300 | Msa1306820:intron | 70.0% | |
| GGCCTAGCCTACGACAGGCC+AGG | - | chr8_4:1780286-1780305 | None:intergenic | 70.0% | |
| GCTAGGCCGTAGGCCCCTGT+AGG | + | chr8_4:1780298-1780317 | Msa1306820:intron | 70.0% | |
| TAGGCCAGGCCGGCCTACAG+GGG | - | chr8_4:1780314-1780333 | None:intergenic | 70.0% | |
| CCTGTGACAGGCCGCAGGCC+AGG | - | chr8_4:1779793-1779812 | None:intergenic | 75.0% | |
| CCTGGCCTGCGGCCTGTCAC+AGG | + | chr8_4:1779790-1779809 | Msa1306820:intron | 75.0% | |
| GGCCGTAGGCCCCTGTAGGC+CGG | + | chr8_4:1780302-1780321 | Msa1306820:intron | 75.0% | |
| GGCCGGCCTACAGGGGCCTA+CGG | - | chr8_4:1780307-1780326 | None:intergenic | 75.0% | |
| TAGGCCCCTGTAGGCCGGCC+TGG | + | chr8_4:1780307-1780326 | Msa1306820:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 1778814 | 1782401 | 1778814 | ID=Msa1306820;Name=Msa1306820 |
| chr8_4 | mRNA | 1778814 | 1782401 | 1778814 | ID=Msa1306820-mRNA-1;Parent=Msa1306820;Name=Msa1306820-mRNA-1;_AED=0.42;_eAED=0.42;_QI=13|1|1|1|1|1|5|361|516 |
| chr8_4 | exon | 1778814 | 1779375 | 1778814 | ID=Msa1306820-mRNA-1:exon:620;Parent=Msa1306820-mRNA-1 |
| chr8_4 | exon | 1780615 | 1780826 | 1780615 | ID=Msa1306820-mRNA-1:exon:621;Parent=Msa1306820-mRNA-1 |
| chr8_4 | exon | 1780969 | 1781205 | 1780969 | ID=Msa1306820-mRNA-1:exon:622;Parent=Msa1306820-mRNA-1 |
| chr8_4 | exon | 1781312 | 1781504 | 1781312 | ID=Msa1306820-mRNA-1:exon:623;Parent=Msa1306820-mRNA-1 |
| chr8_4 | exon | 1781681 | 1782401 | 1781681 | ID=Msa1306820-mRNA-1:exon:624;Parent=Msa1306820-mRNA-1 |
| chr8_4 | five_prime_UTR | 1778814 | 1778826 | 1778814 | ID=Msa1306820-mRNA-1:five_prime_utr;Parent=Msa1306820-mRNA-1 |
| chr8_4 | CDS | 1778827 | 1779375 | 1778827 | ID=Msa1306820-mRNA-1:cds;Parent=Msa1306820-mRNA-1 |
| chr8_4 | CDS | 1780615 | 1780826 | 1780615 | ID=Msa1306820-mRNA-1:cds;Parent=Msa1306820-mRNA-1 |
| chr8_4 | CDS | 1780969 | 1781205 | 1780969 | ID=Msa1306820-mRNA-1:cds;Parent=Msa1306820-mRNA-1 |
| chr8_4 | CDS | 1781312 | 1781504 | 1781312 | ID=Msa1306820-mRNA-1:cds;Parent=Msa1306820-mRNA-1 |
| chr8_4 | CDS | 1781681 | 1782040 | 1781681 | ID=Msa1306820-mRNA-1:cds;Parent=Msa1306820-mRNA-1 |
| chr8_4 | three_prime_UTR | 1782041 | 1782401 | 1782041 | ID=Msa1306820-mRNA-1:three_prime_utr;Parent=Msa1306820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
