Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0577790 | XP_013446598.1 | 95.349 | 516 | 23 | 1 | 1 | 516 | 1 | 515 | 0.0 | 996 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0577790 | sp|A0A1P8B760|AMI4G_ARATH | 62.705 | 488 | 168 | 6 | 27 | 509 | 30 | 508 | 0.0 | 573 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0577790 | A0A072U458 | 95.349 | 516 | 23 | 1 | 1 | 516 | 1 | 515 | 0.0 | 996 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000370 | Msa0577790 | 0.810433 | 1.155559e-50 | -8.615850e-47 |
| Msa0036730 | Msa0577790 | 0.801513 | 8.691500e-49 | -8.615850e-47 |
| Msa0183710 | Msa0577790 | 0.809845 | 1.547274e-50 | -8.615850e-47 |
| Msa0387930 | Msa0577790 | 0.802987 | 4.321846e-49 | -8.615850e-47 |
| Msa0440350 | Msa0577790 | 0.812963 | 3.254215e-51 | -8.615850e-47 |
| Msa0354840 | Msa0577790 | 0.800922 | 1.148040e-48 | -8.615850e-47 |
| Msa0563870 | Msa0577790 | 0.987541 | 1.244619e-170 | -8.615850e-47 |
| Msa0577480 | Msa0577790 | 0.976958 | 7.848941e-143 | -8.615850e-47 |
| Msa0577790 | Msa0722890 | 0.815903 | 7.280980e-52 | -8.615850e-47 |
| Msa0577790 | Msa0723090 | 0.806205 | 9.209450e-50 | -8.615850e-47 |
| Msa0577790 | Msa0931020 | 0.801909 | 7.207966e-49 | -8.615850e-47 |
| Msa0577790 | Msa0956350 | 0.800269 | 1.560175e-48 | -8.615850e-47 |
| Msa0577790 | Msa1022420 | 0.800390 | 1.474274e-48 | -8.615850e-47 |
| Msa0577790 | Msa1082410 | 0.823393 | 1.419206e-53 | -8.615850e-47 |
| Msa0577790 | Msa1088320 | 0.804346 | 2.257813e-49 | -8.615850e-47 |
| Msa0577790 | Msa1090280 | 0.806554 | 7.776463e-50 | -8.615850e-47 |
| Msa0577790 | Msa1165460 | 0.803641 | 3.163514e-49 | -8.615850e-47 |
| Msa0577790 | Msa1257200 | 0.800759 | 1.239686e-48 | -8.615850e-47 |
| Msa0577790 | Msa1261160 | 0.804401 | 2.198752e-49 | -8.615850e-47 |
| Msa0577790 | Msa1306820 | 0.985006 | 3.034777e-162 | -8.615850e-47 |
| Msa0577790 | Msa1323070 | 0.811657 | 6.274365e-51 | -8.615850e-47 |
| Msa0577790 | Msa1447100 | 0.801066 | 1.072924e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0577790 | MtrunA17_Chr8g0377691 | 95.349 | 516 | 23 | 1 | 1 | 516 | 1 | 515 | 0.0 | 996 |
| Msa0577790 | MtrunA17_Chr8g0377701 | 91.245 | 514 | 45 | 0 | 1 | 514 | 1 | 514 | 0.0 | 951 |
| Msa0577790 | MtrunA17_Chr8g0377651 | 85.106 | 517 | 72 | 2 | 1 | 516 | 3 | 515 | 0.0 | 885 |
| Msa0577790 | MtrunA17_Chr8g0377641 | 83.591 | 518 | 78 | 3 | 1 | 516 | 1 | 513 | 0.0 | 871 |
| Msa0577790 | MtrunA17_Chr8g0377681 | 83.789 | 512 | 81 | 2 | 6 | 516 | 3 | 513 | 0.0 | 869 |
| Msa0577790 | MtrunA17_Chr4g0037521 | 59.524 | 504 | 189 | 9 | 16 | 509 | 9 | 507 | 0.0 | 565 |
| Msa0577790 | MtrunA17_Chr4g0037491 | 57.049 | 305 | 117 | 7 | 206 | 500 | 1 | 301 | 8.42e-113 | 336 |
| Msa0577790 | MtrunA17_Chr8g0377661 | 87.179 | 78 | 10 | 0 | 439 | 516 | 1 | 78 | 8.33e-40 | 139 |
| Msa0577790 | MtrunA17_Chr8g0385461 | 33.600 | 250 | 149 | 7 | 41 | 288 | 162 | 396 | 1.90e-30 | 125 |
| Msa0577790 | MtrunA17_Chr4g0037501 | 64.894 | 94 | 31 | 2 | 106 | 197 | 2 | 95 | 4.50e-30 | 113 |
| Msa0577790 | MtrunA17_Chr3g0097801 | 33.457 | 269 | 168 | 5 | 54 | 318 | 55 | 316 | 3.32e-26 | 112 |
| Msa0577790 | MtrunA17_Chr2g0279961 | 24.950 | 501 | 311 | 13 | 33 | 501 | 121 | 588 | 1.98e-21 | 97.8 |
| Msa0577790 | MtrunA17_Chr3g0130801 | 25.703 | 498 | 315 | 21 | 41 | 516 | 200 | 664 | 6.11e-17 | 84.0 |
| Msa0577790 | MtrunA17_Chr8g0384851 | 23.242 | 512 | 329 | 17 | 22 | 504 | 117 | 593 | 2.32e-13 | 72.8 |
| Msa0577790 | MtrunA17_Chr1g0191741 | 39.496 | 119 | 66 | 3 | 141 | 258 | 63 | 176 | 3.27e-13 | 71.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0577790 | AT4G34880.2 | 62.705 | 488 | 168 | 6 | 27 | 509 | 30 | 508 | 0.0 | 573 |
| Msa0577790 | AT4G34880.1 | 55.852 | 487 | 157 | 7 | 27 | 509 | 30 | 462 | 2.95e-178 | 509 |
| Msa0577790 | AT5G07360.1 | 33.469 | 245 | 148 | 7 | 41 | 282 | 204 | 436 | 2.52e-28 | 119 |
| Msa0577790 | AT5G07360.3 | 33.469 | 245 | 148 | 7 | 41 | 282 | 204 | 436 | 2.52e-28 | 119 |
| Msa0577790 | AT3G25660.1 | 33.673 | 294 | 176 | 8 | 53 | 339 | 57 | 338 | 3.47e-25 | 109 |
| Msa0577790 | AT5G07360.2 | 33.061 | 245 | 142 | 8 | 41 | 282 | 204 | 429 | 3.48e-25 | 110 |
| Msa0577790 | AT5G64440.1 | 27.734 | 256 | 169 | 5 | 36 | 284 | 125 | 371 | 2.26e-17 | 85.9 |
| Msa0577790 | AT1G08980.1 | 40.336 | 119 | 65 | 3 | 141 | 258 | 64 | 177 | 6.62e-14 | 74.3 |
Find 146 sgRNAs with CRISPR-Local
Find 274 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACAATATACTCACCGATTT+TGG | 0.052657 | 4_1:+82096140 | None:intergenic |
| AGTCAATATCTGTTACATTT+TGG | 0.120231 | 4_1:+82095384 | None:intergenic |
| GTTGCATGGAATACCTATTT+TGG | 0.183488 | 4_1:-82098460 | Msa0577790:CDS |
| AAAGCTGGGGCTATTATATT+AGG | 0.207407 | 4_1:-82098330 | Msa0577790:CDS |
| GTGAAGCAACTAATTCTTTC+AGG | 0.216627 | 4_1:+82096207 | None:intergenic |
| CTCCTTTGAGAACCGGGTTT+TGG | 0.235272 | 4_1:+82098568 | None:intergenic |
| TGGGTTAAAGCCATCTTATT+TGG | 0.251946 | 4_1:+82095404 | None:intergenic |
| AATATCAGTAGCAGCAAATT+TGG | 0.254182 | 4_1:-82096979 | Msa0577790:CDS |
| GTGTCTTGCCTTGGGCTAAT+TGG | 0.289799 | 4_1:+82096843 | None:intergenic |
| TGAAAATCAACGGGACAATT+AGG | 0.295722 | 4_1:-82095453 | Msa0577790:three_prime_UTR |
| TGAGTGAGTGGTCACATTAC+AGG | 0.307159 | 4_1:-82098296 | Msa0577790:CDS |
| AATTGAGCATAGCCACCTTT+TGG | 0.307622 | 4_1:+82096572 | None:intergenic |
| ATGACAAGATTGTCACATAA+TGG | 0.309835 | 4_1:-82095868 | Msa0577790:CDS |
| TTGATGTTAACTGCTTTCTT+TGG | 0.312414 | 4_1:+82098628 | None:intergenic |
| TCTGCTTGTGCTAATGCATC+TGG | 0.313056 | 4_1:+82098531 | None:intergenic |
| ATGTTATCCTTAACCAAAAT+AGG | 0.317243 | 4_1:+82098447 | None:intergenic |
| CAGCCTGCAGCATGAGATCT+TGG | 0.321727 | 4_1:+82095938 | None:intergenic |
| GTTTGGAAATGACACATTAC+TGG | 0.325517 | 4_1:-82096492 | Msa0577790:CDS |
| TACCCAACTGTGTCTTGCCT+TGG | 0.328875 | 4_1:+82096834 | None:intergenic |
| CATACATGAAGGGCATAAAA+TGG | 0.329473 | 4_1:+82096923 | None:intergenic |
| GCTGAAAACACAAACGGAAT+TGG | 0.344147 | 4_1:-82095919 | Msa0577790:CDS |
| TGGATTGAGAGGAAAGAGAT+TGG | 0.350640 | 4_1:-82096537 | Msa0577790:CDS |
| GTGCTTTGGTCCTTCTCTCT+TGG | 0.365774 | 4_1:+82098499 | None:intergenic |
| AGACTTACCTTAACGTGTTT+AGG | 0.366426 | 4_1:+82096450 | None:intergenic |
| TCCAATACTCCTTTGAGAAC+CGG | 0.372772 | 4_1:+82098561 | None:intergenic |
| AAGCACCTGGTTCTCTTTCA+AGG | 0.377380 | 4_1:-82098482 | Msa0577790:CDS |
| ACCCAACTGTGTCTTGCCTT+GGG | 0.380722 | 4_1:+82096835 | None:intergenic |
| GTAAGAATATACTACGAGTT+TGG | 0.386299 | 4_1:-82096509 | Msa0577790:CDS |
| TGACAAGATTGTCACATAAT+GGG | 0.387697 | 4_1:-82095867 | Msa0577790:CDS |
| CTTGCCATTGGAGGTTATCC+TGG | 0.389584 | 4_1:-82095775 | Msa0577790:CDS |
| TCAGATACAGTCCTGCAAAT+AGG | 0.391218 | 4_1:+82096671 | None:intergenic |
| TGAAAGAGAACCAGGTGCTT+TGG | 0.397701 | 4_1:+82098485 | None:intergenic |
| TTTGCTGCTACTGATATTGC+TGG | 0.399338 | 4_1:+82096984 | None:intergenic |
| GTTGTTGTTGATAGCATAGA+AGG | 0.400557 | 4_1:+82098708 | None:intergenic |
| TTCTTTCAGGTACTTATTCA+AGG | 0.401325 | 4_1:+82096220 | None:intergenic |
| CAGCCATTTGGAATTTGCTT+CGG | 0.404070 | 4_1:-82095721 | Msa0577790:CDS |
| AAGGGAGTGTAACTAGTAGA+AGG | 0.404094 | 4_1:+82098727 | None:intergenic |
| TAAGCAATTTCAATCAACTT+TGG | 0.417086 | 4_1:+82095679 | None:intergenic |
| AGCTACACCTAAACACGTTA+AGG | 0.417453 | 4_1:-82096457 | Msa0577790:intron |
| CTGAAAACACAAACGGAATT+GGG | 0.420174 | 4_1:-82095918 | Msa0577790:CDS |
| TGGTCACATTACAGGTCTAA+TGG | 0.420524 | 4_1:-82098288 | Msa0577790:CDS |
| GCTCAATTTCTAAAGAAAGA+TGG | 0.421932 | 4_1:-82096557 | Msa0577790:CDS |
| TATGAAAAGGATCAGCCATT+TGG | 0.422331 | 4_1:-82095733 | Msa0577790:CDS |
| CCCGGTTCTCAAAGGAGTAT+TGG | 0.431167 | 4_1:-82098562 | Msa0577790:CDS |
| GTTAACAAGTTAAGGAAAGC+TGG | 0.436209 | 4_1:-82098345 | Msa0577790:CDS |
| CAAGGATCATCCAATGTGTA+TGG | 0.439013 | 4_1:+82097023 | None:intergenic |
| AAGCTGGGGCTATTATATTA+GGG | 0.441388 | 4_1:-82098329 | Msa0577790:CDS |
| GCTTTCTTTGGAAGGCAAGT+TGG | 0.441871 | 4_1:+82098640 | None:intergenic |
| CAGGTGTAGTTAACAAGTTA+AGG | 0.444024 | 4_1:-82098353 | Msa0577790:CDS |
| TGATGCTGTGGTAATACCTT+TGG | 0.445327 | 4_1:-82095815 | Msa0577790:CDS |
| TCGTAGGAGAAACTTGAGTA+TGG | 0.447769 | 4_1:-82095961 | Msa0577790:intron |
| TTATCACCAACGTTGTTGAT+TGG | 0.450202 | 4_1:-82095478 | Msa0577790:three_prime_UTR |
| AGAAGAAGCAGTCGTATTCA+TGG | 0.453916 | 4_1:+82095575 | None:intergenic |
| TTTAGTAACATACTTGCCAT+TGG | 0.461482 | 4_1:-82095787 | Msa0577790:CDS |
| CCAATACTCCTTTGAGAACC+GGG | 0.467786 | 4_1:+82098562 | None:intergenic |
| TTTAAGCCAACTGTTGGTAC+TGG | 0.469071 | 4_1:+82095252 | None:intergenic |
| GCCCAAGGCAAGACACAGTT+GGG | 0.473558 | 4_1:-82096836 | Msa0577790:intron |
| CAACAAGAAACACCCAAAAT+CGG | 0.477192 | 4_1:-82096153 | Msa0577790:intron |
| TTAACTACACCTGCATCTCT+TGG | 0.477941 | 4_1:+82098363 | None:intergenic |
| GTCGTATTCATGGGAATTGA+AGG | 0.479685 | 4_1:+82095585 | None:intergenic |
| GAGAGGAAAGAGATTGGGAG+TGG | 0.480046 | 4_1:-82096531 | Msa0577790:CDS |
| TCATGTATGAACTCAGTAGT+AGG | 0.484329 | 4_1:-82096909 | Msa0577790:CDS |
| GGTTCTCTTTCAAGGTTGCA+TGG | 0.486306 | 4_1:-82098474 | Msa0577790:CDS |
| ATCAAACTTCTAACTTTCGA+AGG | 0.491265 | 4_1:+82095617 | None:intergenic |
| TGATTGGTCTGAAAATCAAC+GGG | 0.491915 | 4_1:-82095462 | Msa0577790:three_prime_UTR |
| GGATTGAGAGGAAAGAGATT+GGG | 0.491920 | 4_1:-82096536 | Msa0577790:CDS |
| AATGGCAAGTATGTTACTAA+AGG | 0.492484 | 4_1:+82095789 | None:intergenic |
| CCATTTGGAATTTGCTTCGG+AGG | 0.497867 | 4_1:-82095718 | Msa0577790:CDS |
| TTAACAAGTTAAGGAAAGCT+GGG | 0.500893 | 4_1:-82098344 | Msa0577790:CDS |
| GATAAGTTCGCCAAATAAGA+TGG | 0.505472 | 4_1:-82095414 | Msa0577790:three_prime_UTR |
| ATTTGCTTCGGAGGTTTGAA+AGG | 0.508083 | 4_1:-82095709 | Msa0577790:CDS |
| AAAATTGTCGATGCCTGCTA+TGG | 0.508490 | 4_1:+82096628 | None:intergenic |
| TCAGTAGTGCCAAGAGATGC+AGG | 0.509284 | 4_1:-82098372 | Msa0577790:CDS |
| GCATCAAAGTATATCCCAAA+AGG | 0.517964 | 4_1:-82096587 | Msa0577790:CDS |
| TGTTAACTGCTTTCTTTGGA+AGG | 0.518372 | 4_1:+82098632 | None:intergenic |
| TGCAACCTTGAAAGAGAACC+AGG | 0.523206 | 4_1:+82098477 | None:intergenic |
| TCTAACTTTCGAAGGGGAGG+TGG | 0.524924 | 4_1:+82095625 | None:intergenic |
| CTAAAGAAAGATGGATTGAG+AGG | 0.525250 | 4_1:-82096548 | Msa0577790:CDS |
| AGTAACATACTTGCCATTGG+AGG | 0.525648 | 4_1:-82095784 | Msa0577790:CDS |
| TGGCCAAGATCTCATGCTGC+AGG | 0.534153 | 4_1:-82095941 | Msa0577790:CDS |
| TACGTTCTTGAAACCATAGC+AGG | 0.539094 | 4_1:-82096641 | Msa0577790:CDS |
| TGTTCCAGCAGGATATGAAA+AGG | 0.539625 | 4_1:-82095746 | Msa0577790:CDS |
| CCTCCGAAGCAAATTCCAAA+TGG | 0.542753 | 4_1:+82095718 | None:intergenic |
| GATCAAAGTTGCTTGCTCAA+AGG | 0.544559 | 4_1:+82095654 | None:intergenic |
| TGCTTCACCAGTGAAAAGCT+TGG | 0.546928 | 4_1:-82096192 | Msa0577790:CDS |
| ACTACTGAGTTCATACATGA+AGG | 0.549148 | 4_1:+82096912 | None:intergenic |
| TTTCAAGACTCGTGGAGTCA+TGG | 0.550445 | 4_1:-82098793 | None:intergenic |
| TGCTAGAGGTGGACAAGGAA+AGG | 0.550614 | 4_1:-82098247 | Msa0577790:intron |
| GATAAGCTAAACACTACTGC+AGG | 0.551568 | 4_1:-82098414 | Msa0577790:CDS |
| TTGTTGTTGATAGCATAGAA+GGG | 0.551701 | 4_1:+82098709 | None:intergenic |
| TCAAACTTCTAACTTTCGAA+GGG | 0.553186 | 4_1:+82095618 | None:intergenic |
| GGCTAGTGGATTCTCAATCA+AGG | 0.555061 | 4_1:-82098682 | Msa0577790:CDS |
| AGCCCAAGGCAAGACACAGT+TGG | 0.555092 | 4_1:-82096837 | Msa0577790:CDS |
| CCTGCTGGAACAATCACTCC+AGG | 0.559268 | 4_1:+82095757 | None:intergenic |
| AGCTCACCAGTACCAACAGT+TGG | 0.559686 | 4_1:-82095258 | Msa0577790:three_prime_UTR |
| CCTGGAGTGATTGTTCCAGC+AGG | 0.563666 | 4_1:-82095757 | Msa0577790:CDS |
| GGAAGGCCACTTTGAGTGAG+TGG | 0.565034 | 4_1:-82098308 | Msa0577790:CDS |
| TTGATTGGTCTGAAAATCAA+CGG | 0.565999 | 4_1:-82095463 | Msa0577790:three_prime_UTR |
| TCAACAACAACCTTGGCTAG+TGG | 0.566924 | 4_1:-82098696 | Msa0577790:CDS |
| GATTCAACTTTCAAGACTCG+TGG | 0.569084 | 4_1:-82098801 | None:intergenic |
| CTAATGGAGCTCCTAGCGGT+TGG | 0.569270 | 4_1:-82098272 | Msa0577790:CDS |
| GTTGGTCTCACTAGTAGAGC+AGG | 0.569449 | 4_1:-82096873 | Msa0577790:CDS |
| CTGCAGGCTGAAAACACAAA+CGG | 0.569958 | 4_1:-82095925 | Msa0577790:CDS |
| ATCCAAAACCCGGTTCTCAA+AGG | 0.571970 | 4_1:-82098570 | Msa0577790:CDS |
| GATTGAGAATCCACTAGCCA+AGG | 0.574276 | 4_1:+82098686 | None:intergenic |
| TTTGCTTCGGAGGTTTGAAA+GGG | 0.576489 | 4_1:-82095708 | Msa0577790:CDS |
| GAAGAAGCAGTCGTATTCAT+GGG | 0.582811 | 4_1:+82095576 | None:intergenic |
| AAGAAATAAACTTGATGCTG+TGG | 0.585547 | 4_1:-82095827 | Msa0577790:CDS |
| CTACTGAGTTCATACATGAA+GGG | 0.587717 | 4_1:+82096913 | None:intergenic |
| GGTTCTCAAAGGAGTATTGG+AGG | 0.589717 | 4_1:-82098559 | Msa0577790:CDS |
| CCAAATTAAAATCCAAAACC+CGG | 0.591273 | 4_1:-82098580 | Msa0577790:CDS |
| CCTAGCGGTTGGAGTGCTAG+AGG | 0.596039 | 4_1:-82098261 | Msa0577790:CDS |
| TATGCTATCAACAACAACCT+TGG | 0.596156 | 4_1:-82098703 | Msa0577790:CDS |
| TTCAGACCAATCAACAACGT+TGG | 0.596436 | 4_1:+82095472 | None:intergenic |
| CCTCTAGCACTCCAACCGCT+AGG | 0.596959 | 4_1:+82098261 | None:intergenic |
| ATGTGACCACTCACTCAAAG+TGG | 0.600148 | 4_1:+82098302 | None:intergenic |
| TCGTATTCATGGGAATTGAA+GGG | 0.601400 | 4_1:+82095586 | None:intergenic |
| GAGAGAAGGACCAAAGCACC+TGG | 0.601549 | 4_1:-82098495 | Msa0577790:CDS |
| CACTCCAGGATAACCTCCAA+TGG | 0.611824 | 4_1:+82095771 | None:intergenic |
| TTCTTCAAAATCAGGCGAAG+AGG | 0.612164 | 4_1:-82096338 | Msa0577790:intron |
| ACTTCTAACTTTCGAAGGGG+AGG | 0.613064 | 4_1:+82095622 | None:intergenic |
| GTATTCATGGGAATTGAAGG+GGG | 0.613740 | 4_1:+82095588 | None:intergenic |
| GATCCTTGTGGATCAAGTAG+TGG | 0.622632 | 4_1:-82097008 | Msa0577790:CDS |
| TGGGGCTATTATATTAGGGA+AGG | 0.623176 | 4_1:-82098325 | Msa0577790:CDS |
| CGTATTCATGGGAATTGAAG+GGG | 0.624730 | 4_1:+82095587 | None:intergenic |
| AGGGCATAAAATGGAGCCAT+CGG | 0.628207 | 4_1:+82096932 | None:intergenic |
| TCAAAGTATATCCCAAAAGG+TGG | 0.630247 | 4_1:-82096584 | Msa0577790:CDS |
| TACACATTGGATGATCCTTG+TGG | 0.640179 | 4_1:-82097020 | Msa0577790:CDS |
| AGCGGTTGGAGTGCTAGAGG+TGG | 0.641094 | 4_1:-82098258 | Msa0577790:CDS |
| ATAAAGCTGACCAAGAGAGA+AGG | 0.642713 | 4_1:-82098509 | Msa0577790:CDS |
| CTACTAGTGAGACCAACCGT+TGG | 0.644995 | 4_1:+82096879 | None:intergenic |
| AATTTGGTGACTGTGTCACT+TGG | 0.645354 | 4_1:-82096963 | Msa0577790:CDS |
| GTAGGCATCAAACCAACGGT+TGG | 0.648249 | 4_1:-82096891 | Msa0577790:CDS |
| AAGAGAGCTAGCACATGCTG+AGG | 0.651382 | 4_1:+82098770 | None:intergenic |
| GTGTAGTTCCAATTAGCCCA+AGG | 0.651600 | 4_1:-82096851 | Msa0577790:CDS |
| TGGAGTGCTAGAGGTGGACA+AGG | 0.653815 | 4_1:-82098252 | Msa0577790:CDS |
| ATTCATGGGAATTGAAGGGG+GGG | 0.660747 | 4_1:+82095590 | None:intergenic |
| TAACAAGTTAAGGAAAGCTG+GGG | 0.661025 | 4_1:-82098343 | Msa0577790:CDS |
| TATTCATGGGAATTGAAGGG+GGG | 0.662700 | 4_1:+82095589 | None:intergenic |
| ATGTTACTAAAGGATGCCAA+AGG | 0.670433 | 4_1:+82095799 | None:intergenic |
| CAAACTTCTAACTTTCGAAG+GGG | 0.687115 | 4_1:+82095619 | None:intergenic |
| AGTAGTAGGCATCAAACCAA+CGG | 0.690720 | 4_1:-82096895 | Msa0577790:CDS |
| TGTGCAGAATCCATACACAT+TGG | 0.705508 | 4_1:-82097033 | Msa0577790:intron |
| AGGTCTAATGGAGCTCCTAG+CGG | 0.708611 | 4_1:-82098276 | Msa0577790:CDS |
| TCACTTGGTACTGAAACCGA+TGG | 0.716676 | 4_1:-82096948 | Msa0577790:CDS |
| GGTCCACTACTTGATCCACA+AGG | 0.733820 | 4_1:+82097005 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAATGTTCATAATATAT+AGG | + | chr4_1:82096279-82096298 | None:intergenic | 10.0% |
| !! | ATTATTCATATTACTTAAAT+AGG | - | chr4_1:82096549-82096568 | Msa0577790:CDS | 10.0% |
| !!! | TGACTAGTTTTTTTTTATTA+AGG | + | chr4_1:82096082-82096101 | None:intergenic | 15.0% |
| !!! | ATAAAGTTTTTCATCTTAAG+TGG | - | chr4_1:82096019-82096038 | Msa0577790:intron | 20.0% |
| !! | TCACTAATATAATATCCAAT+GGG | - | chr4_1:82096099-82096118 | Msa0577790:intron | 20.0% |
| !!! | TAATATATAGGCTTTTAAAC+AGG | + | chr4_1:82096267-82096286 | None:intergenic | 20.0% |
| !! | CAATTTGATCTAAGTTTAAA+TGG | - | chr4_1:82096305-82096324 | Msa0577790:CDS | 20.0% |
| !!! | ATAATCAACTTGAGTTTTTA+GGG | - | chr4_1:82096367-82096386 | Msa0577790:intron | 20.0% |
| !!! | TTAAGCCTATTTAACTTAAA+AGG | + | chr4_1:82096621-82096640 | None:intergenic | 20.0% |
| !!! | ACTTTTTTCTTAAATAGAGA+AGG | + | chr4_1:82096657-82096676 | None:intergenic | 20.0% |
| !!! | AAATATTCACTCACTTTTTT+TGG | + | chr4_1:82096895-82096914 | None:intergenic | 20.0% |
| !!! | AAAAAGTGAGTGAATATTTT+TGG | - | chr4_1:82096896-82096915 | Msa0577790:CDS | 20.0% |
| !!! | CATAATGAAGTTATTACTTT+TGG | + | chr4_1:82096925-82096944 | None:intergenic | 20.0% |
| !! | ATTTAATAGCAAAATGTCTT+TGG | + | chr4_1:82097321-82097340 | None:intergenic | 20.0% |
| !!! | ATTATCAAATAATCGTTTTC+AGG | - | chr4_1:82098740-82098759 | Msa0577790:CDS | 20.0% |
| !!! | TTTGGATTTTAATTTGGTTG+AGG | + | chr4_1:82095461-82095480 | None:intergenic | 25.0% |
| ! | ATGTTATCCTTAACCAAAAT+AGG | + | chr4_1:82095600-82095619 | None:intergenic | 25.0% |
| ! | GTCACTAATATAATATCCAA+TGG | - | chr4_1:82096098-82096117 | Msa0577790:intron | 25.0% |
| !!! | GCTTAGGCTTTAAAAAAATA+TGG | + | chr4_1:82096211-82096230 | None:intergenic | 25.0% |
| !! | CATAATCAACTTGAGTTTTT+AGG | - | chr4_1:82096366-82096385 | Msa0577790:intron | 25.0% |
| ! | TTCATATTACTTAAATAGGC+CGG | - | chr4_1:82096553-82096572 | Msa0577790:CDS | 25.0% |
| ! | CTCTATTTAAGAAAAAAGTC+TGG | - | chr4_1:82096658-82096677 | Msa0577790:CDS | 25.0% |
| !!! | TGTTGACTTAAAGAAAACAT+AGG | + | chr4_1:82097266-82097285 | None:intergenic | 25.0% |
| ! | CTTTATGTAACAAATAGGAA+TGG | + | chr4_1:82098014-82098033 | None:intergenic | 25.0% |
| ! | AATTGTTGTATAAACATCGT+AGG | - | chr4_1:82098067-82098086 | Msa0577790:intron | 25.0% |
| ! | TAAGCAATTTCAATCAACTT+TGG | + | chr4_1:82098368-82098387 | None:intergenic | 25.0% |
| !! | GTCAATATCTGTTACATTTT+GGG | + | chr4_1:82098662-82098681 | None:intergenic | 25.0% |
| !! | AGTCAATATCTGTTACATTT+TGG | + | chr4_1:82098663-82098682 | None:intergenic | 25.0% |
| !! | TTGTTGTTGATAGCATAGAA+GGG | + | chr4_1:82095338-82095357 | None:intergenic | 30.0% |
| TTGATGTTAACTGCTTTCTT+TGG | + | chr4_1:82095419-82095438 | None:intergenic | 30.0% | |
| CCAAATTAAAATCCAAAACC+CGG | - | chr4_1:82095464-82095483 | Msa0577790:three_prime_UTR | 30.0% | |
| !!! | TGGAATACCTATTTTGGTTA+AGG | - | chr4_1:82095590-82095609 | Msa0577790:three_prime_UTR | 30.0% |
| TTAACAAGTTAAGGAAAGCT+GGG | - | chr4_1:82095700-82095719 | Msa0577790:CDS | 30.0% | |
| ! | TACTTAATTTGACCATGATC+TGG | - | chr4_1:82095842-82095861 | Msa0577790:CDS | 30.0% |
| !!! | TTTATCCCTCACTCTTTTTT+GGG | + | chr4_1:82095987-82096006 | None:intergenic | 30.0% |
| !!! | ATTTATCCCTCACTCTTTTT+TGG | + | chr4_1:82095988-82096007 | None:intergenic | 30.0% |
| ATCTTAAGTGGTAGAGTTAT+AGG | - | chr4_1:82096031-82096050 | Msa0577790:intron | 30.0% | |
| AATATAATATCCAATGGGTG+TGG | - | chr4_1:82096104-82096123 | Msa0577790:intron | 30.0% | |
| !! | AGGCTTTAAAAAAATATGGC+AGG | + | chr4_1:82096207-82096226 | None:intergenic | 30.0% |
| !!! | ATTTTTTTAAAGCCTAAGCC+TGG | - | chr4_1:82096212-82096231 | Msa0577790:CDS | 30.0% |
| AAAAGCCTCTTAAGCTTATT+AGG | + | chr4_1:82096579-82096598 | None:intergenic | 30.0% | |
| ATAGGCTTAAAAAAAAGCCT+AGG | - | chr4_1:82096631-82096650 | Msa0577790:CDS | 30.0% | |
| ! | AATCTCTTCTTAGGTGTTTT+AGG | + | chr4_1:82096816-82096835 | None:intergenic | 30.0% |
| !!! | ATTCACTCACTTTTTTTGGT+TGG | + | chr4_1:82096891-82096910 | None:intergenic | 30.0% |
| !!! | AAGTGAGTGAATATTTTTGG+AGG | - | chr4_1:82096899-82096918 | Msa0577790:CDS | 30.0% |
| ATACTTAAGTTCCTATGAGA+AGG | + | chr4_1:82096948-82096967 | None:intergenic | 30.0% | |
| CATAGGAACTTAAGTATGAA+TGG | - | chr4_1:82096951-82096970 | Msa0577790:CDS | 30.0% | |
| !! | ATGAATGGTTCTAGAAAATG+AGG | - | chr4_1:82096966-82096985 | Msa0577790:CDS | 30.0% |
| AATATCAGTAGCAGCAAATT+TGG | - | chr4_1:82097065-82097084 | Msa0577790:intron | 30.0% | |
| CCAATTTGCCACATATATAT+AGG | + | chr4_1:82097238-82097257 | None:intergenic | 30.0% | |
| CCTATATATATGTGGCAAAT+TGG | - | chr4_1:82097235-82097254 | Msa0577790:intron | 30.0% | |
| ! | ATGTGTAAACATTGATTGTG+TGG | - | chr4_1:82097339-82097358 | Msa0577790:intron | 30.0% |
| !!! | TTGATTGTGTGGTTTTGTAT+AGG | - | chr4_1:82097350-82097369 | Msa0577790:intron | 30.0% |
| ! | GCTCAATTTCTAAAGAAAGA+TGG | - | chr4_1:82097487-82097506 | Msa0577790:intron | 30.0% |
| GTAAGAATATACTACGAGTT+TGG | - | chr4_1:82097535-82097554 | Msa0577790:intron | 30.0% | |
| TGTGTACTTTCTTCAAAATC+AGG | - | chr4_1:82097698-82097717 | Msa0577790:intron | 30.0% | |
| ! | TTCTTTCAGGTACTTATTCA+AGG | + | chr4_1:82097827-82097846 | None:intergenic | 30.0% |
| !!! | ACAATATACTCACCGATTTT+GGG | + | chr4_1:82097906-82097925 | None:intergenic | 30.0% |
| !!! | TACAATATACTCACCGATTT+TGG | + | chr4_1:82097907-82097926 | None:intergenic | 30.0% |
| CTGGACTTTATGTAACAAAT+AGG | + | chr4_1:82098019-82098038 | None:intergenic | 30.0% | |
| ATGACAAGATTGTCACATAA+TGG | - | chr4_1:82098176-82098195 | Msa0577790:intron | 30.0% | |
| TGACAAGATTGTCACATAAT+GGG | - | chr4_1:82098177-82098196 | Msa0577790:intron | 30.0% | |
| AAGAAATAAACTTGATGCTG+TGG | - | chr4_1:82098217-82098236 | Msa0577790:intron | 30.0% | |
| AATGGCAAGTATGTTACTAA+AGG | + | chr4_1:82098258-82098277 | None:intergenic | 30.0% | |
| TTTAGTAACATACTTGCCAT+TGG | - | chr4_1:82098257-82098276 | Msa0577790:CDS | 30.0% | |
| TCAAACTTCTAACTTTCGAA+GGG | + | chr4_1:82098429-82098448 | None:intergenic | 30.0% | |
| ATCAAACTTCTAACTTTCGA+AGG | + | chr4_1:82098430-82098449 | None:intergenic | 30.0% | |
| !! | TTGATTGGTCTGAAAATCAA+CGG | - | chr4_1:82098581-82098600 | Msa0577790:CDS | 30.0% |
| !!! | TCAAATAATCGTTTTCAGGT+TGG | - | chr4_1:82098744-82098763 | Msa0577790:CDS | 30.0% |
| !!! | CAAATAATCGTTTTCAGGTT+GGG | - | chr4_1:82098745-82098764 | Msa0577790:CDS | 30.0% |
| !! | GTTGTTGTTGATAGCATAGA+AGG | + | chr4_1:82095339-82095358 | None:intergenic | 35.0% |
| TATGCTATCAACAACAACCT+TGG | - | chr4_1:82095341-82095360 | Msa0577790:three_prime_UTR | 35.0% | |
| TGTTAACTGCTTTCTTTGGA+AGG | + | chr4_1:82095415-82095434 | None:intergenic | 35.0% | |
| !!! | CCGGGTTTTGGATTTTAATT+TGG | + | chr4_1:82095467-82095486 | None:intergenic | 35.0% |
| ! | GTTGCATGGAATACCTATTT+TGG | - | chr4_1:82095584-82095603 | Msa0577790:three_prime_UTR | 35.0% |
| CAGGTGTAGTTAACAAGTTA+AGG | - | chr4_1:82095691-82095710 | Msa0577790:CDS | 35.0% | |
| GTTAACAAGTTAAGGAAAGC+TGG | - | chr4_1:82095699-82095718 | Msa0577790:CDS | 35.0% | |
| TAACAAGTTAAGGAAAGCTG+GGG | - | chr4_1:82095701-82095720 | Msa0577790:CDS | 35.0% | |
| AAAGCTGGGGCTATTATATT+AGG | - | chr4_1:82095714-82095733 | Msa0577790:CDS | 35.0% | |
| AAGCTGGGGCTATTATATTA+GGG | - | chr4_1:82095715-82095734 | Msa0577790:CDS | 35.0% | |
| TGAATTGAAAAGCCAGATCA+TGG | + | chr4_1:82095857-82095876 | None:intergenic | 35.0% | |
| TTGTTAACCACTGAGCTTAT+AGG | - | chr4_1:82096133-82096152 | Msa0577790:intron | 35.0% | |
| TGTTAACCACTGAGCTTATA+GGG | - | chr4_1:82096134-82096153 | Msa0577790:intron | 35.0% | |
| ! | GACAGTATCAGACTTTTAGA+AGG | + | chr4_1:82096238-82096257 | None:intergenic | 35.0% |
| ! | CCTATTTAACTTAAAAGGCC+AGG | + | chr4_1:82096616-82096635 | None:intergenic | 35.0% |
| !!! | CCTGGCCTTTTAAGTTAAAT+AGG | - | chr4_1:82096613-82096632 | Msa0577790:CDS | 35.0% |
| TTCTTAAATAGAGAAGGCCT+AGG | + | chr4_1:82096651-82096670 | None:intergenic | 35.0% | |
| TTTAAGAAAAAAGTCTGGCC+TGG | - | chr4_1:82096663-82096682 | Msa0577790:CDS | 35.0% | |
| ATCCAGACTAATCTCTTCTT+AGG | + | chr4_1:82096825-82096844 | None:intergenic | 35.0% | |
| !!! | ACTCACTTTTTTTGGTTGGA+AGG | + | chr4_1:82096887-82096906 | None:intergenic | 35.0% |
| ACTTCATTATGCCTTCTCAT+AGG | - | chr4_1:82096934-82096953 | Msa0577790:CDS | 35.0% | |
| ! | CATACATGAAGGGCATAAAA+TGG | + | chr4_1:82097124-82097143 | None:intergenic | 35.0% |
| CTACTGAGTTCATACATGAA+GGG | + | chr4_1:82097134-82097153 | None:intergenic | 35.0% | |
| ACTACTGAGTTCATACATGA+AGG | + | chr4_1:82097135-82097154 | None:intergenic | 35.0% | |
| TCATGTATGAACTCAGTAGT+AGG | - | chr4_1:82097135-82097154 | Msa0577790:intron | 35.0% | |
| TGGGTAAGCCTATATATATG+TGG | - | chr4_1:82097227-82097246 | Msa0577790:intron | 35.0% | |
| ! | ATAGCAAAATGTCTTTGGAG+AGG | + | chr4_1:82097316-82097335 | None:intergenic | 35.0% |
| ! | TTTTGTATAGGCCTATTTGC+AGG | - | chr4_1:82097362-82097381 | Msa0577790:intron | 35.0% |
| !!! | AGGCATCGACAATTTTGATA+AGG | - | chr4_1:82097423-82097442 | Msa0577790:intron | 35.0% |
| GCATCAAAGTATATCCCAAA+AGG | - | chr4_1:82097457-82097476 | Msa0577790:intron | 35.0% | |
| TCAAAGTATATCCCAAAAGG+TGG | - | chr4_1:82097460-82097479 | Msa0577790:intron | 35.0% | |
| !! | CTAAAGAAAGATGGATTGAG+AGG | - | chr4_1:82097496-82097515 | Msa0577790:intron | 35.0% |
| GTTTGGAAATGACACATTAC+TGG | - | chr4_1:82097552-82097571 | Msa0577790:intron | 35.0% | |
| AGACTTACCTTAACGTGTTT+AGG | + | chr4_1:82097597-82097616 | None:intergenic | 35.0% | |
| GTGAAGCAACTAATTCTTTC+AGG | + | chr4_1:82097840-82097859 | None:intergenic | 35.0% | |
| !! | TTTTGGGTGTTTCTTGTTGA+AGG | + | chr4_1:82097890-82097909 | None:intergenic | 35.0% |
| CAACAAGAAACACCCAAAAT+CGG | - | chr4_1:82097891-82097910 | Msa0577790:intron | 35.0% | |
| CTGAAAACACAAACGGAATT+GGG | - | chr4_1:82098126-82098145 | Msa0577790:intron | 35.0% | |
| ATGTTACTAAAGGATGCCAA+AGG | + | chr4_1:82098248-82098267 | None:intergenic | 35.0% | |
| TATGAAAAGGATCAGCCATT+TGG | - | chr4_1:82098311-82098330 | Msa0577790:CDS | 35.0% | |
| CAAACTTCTAACTTTCGAAG+GGG | + | chr4_1:82098428-82098447 | None:intergenic | 35.0% | |
| TCGTATTCATGGGAATTGAA+GGG | + | chr4_1:82098461-82098480 | None:intergenic | 35.0% | |
| TTATCACCAACGTTGTTGAT+TGG | - | chr4_1:82098566-82098585 | Msa0577790:CDS | 35.0% | |
| !! | TGATTGGTCTGAAAATCAAC+GGG | - | chr4_1:82098582-82098601 | Msa0577790:CDS | 35.0% |
| TGAAAATCAACGGGACAATT+AGG | - | chr4_1:82098591-82098610 | Msa0577790:CDS | 35.0% | |
| GATAAGTTCGCCAAATAAGA+TGG | - | chr4_1:82098630-82098649 | Msa0577790:CDS | 35.0% | |
| TGGGTTAAAGCCATCTTATT+TGG | + | chr4_1:82098643-82098662 | None:intergenic | 35.0% | |
| ! | AAGGGAGTGTAACTAGTAGA+AGG | + | chr4_1:82095320-82095339 | None:intergenic | 40.0% |
| ! | TCCAATACTCCTTTGAGAAC+CGG | + | chr4_1:82095486-82095505 | None:intergenic | 40.0% |
| ATAAAGCTGACCAAGAGAGA+AGG | - | chr4_1:82095535-82095554 | Msa0577790:three_prime_UTR | 40.0% | |
| GATAAGCTAAACACTACTGC+AGG | - | chr4_1:82095630-82095649 | Msa0577790:CDS | 40.0% | |
| TTAACTACACCTGCATCTCT+TGG | + | chr4_1:82095684-82095703 | None:intergenic | 40.0% | |
| TGGGGCTATTATATTAGGGA+AGG | - | chr4_1:82095719-82095738 | Msa0577790:CDS | 40.0% | |
| TGGTCACATTACAGGTCTAA+TGG | - | chr4_1:82095756-82095775 | Msa0577790:CDS | 40.0% | |
| TAAGTGGTAGAGTTATAGGC+TGG | - | chr4_1:82096035-82096054 | Msa0577790:intron | 40.0% | |
| ! | GGACTTTTCGATAGCTTATG+AGG | - | chr4_1:82096056-82096075 | Msa0577790:intron | 40.0% |
| !! | TATCAGACTTTTAGAAGGCC+AGG | + | chr4_1:82096233-82096252 | None:intergenic | 40.0% |
| !! | AGCTTAAGAGGCTTTTTGAG+AGG | - | chr4_1:82096583-82096602 | Msa0577790:CDS | 40.0% |
| ATCTCCGCTGAACACATTAA+TGG | - | chr4_1:82096770-82096789 | Msa0577790:intron | 40.0% | |
| CTCACCATTAATGTGTTCAG+CGG | + | chr4_1:82096777-82096796 | None:intergenic | 40.0% | |
| GCTGAACACATTAATGGTGA+GGG | - | chr4_1:82096776-82096795 | Msa0577790:intron | 40.0% | |
| CTGAACACATTAATGGTGAG+GGG | - | chr4_1:82096777-82096796 | Msa0577790:intron | 40.0% | |
| ! | CACCTAAGAAGAGATTAGTC+TGG | - | chr4_1:82096820-82096839 | Msa0577790:intron | 40.0% |
| TAGTCTGGATATCAGTCCAA+TGG | - | chr4_1:82096835-82096854 | Msa0577790:intron | 40.0% | |
| TGTGCAGAATCCATACACAT+TGG | - | chr4_1:82097011-82097030 | Msa0577790:CDS | 40.0% | |
| CAAGGATCATCCAATGTGTA+TGG | + | chr4_1:82097024-82097043 | None:intergenic | 40.0% | |
| TACACATTGGATGATCCTTG+TGG | - | chr4_1:82097024-82097043 | Msa0577790:CDS | 40.0% | |
| TTTGCTGCTACTGATATTGC+TGG | + | chr4_1:82097063-82097082 | None:intergenic | 40.0% | |
| ! | AATTTGGTGACTGTGTCACT+TGG | - | chr4_1:82097081-82097100 | Msa0577790:intron | 40.0% |
| AGTAGTAGGCATCAAACCAA+CGG | - | chr4_1:82097149-82097168 | Msa0577790:intron | 40.0% | |
| TCAGATACAGTCCTGCAAAT+AGG | + | chr4_1:82097376-82097395 | None:intergenic | 40.0% | |
| TACGTTCTTGAAACCATAGC+AGG | - | chr4_1:82097403-82097422 | Msa0577790:intron | 40.0% | |
| AAAATTGTCGATGCCTGCTA+TGG | + | chr4_1:82097419-82097438 | None:intergenic | 40.0% | |
| ! | ATTGAGCATAGCCACCTTTT+GGG | + | chr4_1:82097474-82097493 | None:intergenic | 40.0% |
| ! | AATTGAGCATAGCCACCTTT+TGG | + | chr4_1:82097475-82097494 | None:intergenic | 40.0% |
| TGGATTGAGAGGAAAGAGAT+TGG | - | chr4_1:82097507-82097526 | Msa0577790:intron | 40.0% | |
| GGATTGAGAGGAAAGAGATT+GGG | - | chr4_1:82097508-82097527 | Msa0577790:intron | 40.0% | |
| AGCTACACCTAAACACGTTA+AGG | - | chr4_1:82097587-82097606 | Msa0577790:intron | 40.0% | |
| TTCTTCAAAATCAGGCGAAG+AGG | - | chr4_1:82097706-82097725 | Msa0577790:intron | 40.0% | |
| TCGTGATCAATGTTCATAGC+TGG | + | chr4_1:82098038-82098057 | None:intergenic | 40.0% | |
| TCGTAGGAGAAACTTGAGTA+TGG | - | chr4_1:82098083-82098102 | Msa0577790:intron | 40.0% | |
| GCTGAAAACACAAACGGAAT+TGG | - | chr4_1:82098125-82098144 | Msa0577790:intron | 40.0% | |
| TGATGCTGTGGTAATACCTT+TGG | - | chr4_1:82098229-82098248 | Msa0577790:intron | 40.0% | |
| AGTAACATACTTGCCATTGG+AGG | - | chr4_1:82098260-82098279 | Msa0577790:CDS | 40.0% | |
| TGTTCCAGCAGGATATGAAA+AGG | - | chr4_1:82098298-82098317 | Msa0577790:CDS | 40.0% | |
| ! | TGATCCTTTTCATATCCTGC+TGG | + | chr4_1:82098305-82098324 | None:intergenic | 40.0% |
| ! | CAGCCATTTGGAATTTGCTT+CGG | - | chr4_1:82098323-82098342 | Msa0577790:CDS | 40.0% |
| ATTTGCTTCGGAGGTTTGAA+AGG | - | chr4_1:82098335-82098354 | Msa0577790:CDS | 40.0% | |
| TTTGCTTCGGAGGTTTGAAA+GGG | - | chr4_1:82098336-82098355 | Msa0577790:CDS | 40.0% | |
| GATCAAAGTTGCTTGCTCAA+AGG | + | chr4_1:82098393-82098412 | None:intergenic | 40.0% | |
| TATTCATGGGAATTGAAGGG+GGG | + | chr4_1:82098458-82098477 | None:intergenic | 40.0% | |
| GTATTCATGGGAATTGAAGG+GGG | + | chr4_1:82098459-82098478 | None:intergenic | 40.0% | |
| CGTATTCATGGGAATTGAAG+GGG | + | chr4_1:82098460-82098479 | None:intergenic | 40.0% | |
| GTCGTATTCATGGGAATTGA+AGG | + | chr4_1:82098462-82098481 | None:intergenic | 40.0% | |
| GAAGAAGCAGTCGTATTCAT+GGG | + | chr4_1:82098471-82098490 | None:intergenic | 40.0% | |
| AGAAGAAGCAGTCGTATTCA+TGG | + | chr4_1:82098472-82098491 | None:intergenic | 40.0% | |
| TTCAGACCAATCAACAACGT+TGG | + | chr4_1:82098575-82098594 | None:intergenic | 40.0% | |
| !!! | ATAATCGTTTTCAGGTTGGG+CGG | - | chr4_1:82098748-82098767 | Msa0577790:CDS | 40.0% |
| TCAACAACAACCTTGGCTAG+TGG | - | chr4_1:82095348-82095367 | Msa0577790:three_prime_UTR | 45.0% | |
| GATTGAGAATCCACTAGCCA+AGG | + | chr4_1:82095361-82095380 | None:intergenic | 45.0% | |
| !! | GGCTAGTGGATTCTCAATCA+AGG | - | chr4_1:82095362-82095381 | Msa0577790:three_prime_UTR | 45.0% |
| ! | GCTTTCTTTGGAAGGCAAGT+TGG | + | chr4_1:82095407-82095426 | None:intergenic | 45.0% |
| ATCCAAAACCCGGTTCTCAA+AGG | - | chr4_1:82095474-82095493 | Msa0577790:three_prime_UTR | 45.0% | |
| ! | CCAATACTCCTTTGAGAACC+GGG | + | chr4_1:82095485-82095504 | None:intergenic | 45.0% |
| !! | GGTTCTCAAAGGAGTATTGG+AGG | - | chr4_1:82095485-82095504 | Msa0577790:three_prime_UTR | 45.0% |
| TCTGCTTGTGCTAATGCATC+TGG | + | chr4_1:82095516-82095535 | None:intergenic | 45.0% | |
| TGAAAGAGAACCAGGTGCTT+TGG | + | chr4_1:82095562-82095581 | None:intergenic | 45.0% | |
| ! | AAGCACCTGGTTCTCTTTCA+AGG | - | chr4_1:82095562-82095581 | Msa0577790:three_prime_UTR | 45.0% |
| TGCAACCTTGAAAGAGAACC+AGG | + | chr4_1:82095570-82095589 | None:intergenic | 45.0% | |
| GGTTCTCTTTCAAGGTTGCA+TGG | - | chr4_1:82095570-82095589 | Msa0577790:three_prime_UTR | 45.0% | |
| ! | GCAGGTTCTTTTGCATTGCT+TGG | - | chr4_1:82095648-82095667 | Msa0577790:CDS | 45.0% |
| ATGTGACCACTCACTCAAAG+TGG | + | chr4_1:82095745-82095764 | None:intergenic | 45.0% | |
| TGAGTGAGTGGTCACATTAC+AGG | - | chr4_1:82095748-82095767 | Msa0577790:CDS | 45.0% | |
| !!! | ACTCTTTTTTGGGACAGCTC+TGG | + | chr4_1:82095977-82095996 | None:intergenic | 45.0% |
| AGCTGTCCCAAAAAAGAGTG+AGG | - | chr4_1:82095978-82095997 | Msa0577790:intron | 45.0% | |
| GCTGTCCCAAAAAAGAGTGA+GGG | - | chr4_1:82095979-82095998 | Msa0577790:intron | 45.0% | |
| ACAAACTGAACCACACCCAT+TGG | + | chr4_1:82096117-82096136 | None:intergenic | 45.0% | |
| AACCACTGAGCTTATAGGGA+TGG | - | chr4_1:82096138-82096157 | Msa0577790:intron | 45.0% | |
| ACCACTGAGCTTATAGGGAT+GGG | - | chr4_1:82096139-82096158 | Msa0577790:intron | 45.0% | |
| GAGCTTATAGGGATGGGAAT+AGG | - | chr4_1:82096145-82096164 | Msa0577790:intron | 45.0% | |
| TATAGGGATGGGAATAGGCT+AGG | - | chr4_1:82096150-82096169 | Msa0577790:intron | 45.0% | |
| AAATATGGCAGGCCAGACTT+AGG | + | chr4_1:82096196-82096215 | None:intergenic | 45.0% | |
| !! | ACTTTTAGAAGGCCAGGCTT+AGG | + | chr4_1:82096227-82096246 | None:intergenic | 45.0% |
| GCCTCTTAAGCTTATTAGGC+CGG | + | chr4_1:82096575-82096594 | None:intergenic | 45.0% | |
| CGCTGAACACATTAATGGTG+AGG | - | chr4_1:82096775-82096794 | Msa0577790:intron | 45.0% | |
| ! | TTCCACTAGCTTCAGTCCAT+TGG | + | chr4_1:82096854-82096873 | None:intergenic | 45.0% |
| GATCCTTGTGGATCAAGTAG+TGG | - | chr4_1:82097036-82097055 | Msa0577790:intron | 45.0% | |
| ! | TCACTTGGTACTGAAACCGA+TGG | - | chr4_1:82097096-82097115 | Msa0577790:intron | 45.0% |
| AGGGCATAAAATGGAGCCAT+CGG | + | chr4_1:82097115-82097134 | None:intergenic | 45.0% | |
| GTGTAGTTCCAATTAGCCCA+AGG | - | chr4_1:82097193-82097212 | Msa0577790:intron | 45.0% | |
| TGCTTCACCAGTGAAAAGCT+TGG | - | chr4_1:82097852-82097871 | Msa0577790:intron | 45.0% | |
| ! | ACATCTGCCAAGCTTTTCAC+TGG | + | chr4_1:82097862-82097881 | None:intergenic | 45.0% |
| CTTACAGTCGTGAAGCAAAC+TGG | + | chr4_1:82097956-82097975 | None:intergenic | 45.0% | |
| CTGCAGGCTGAAAACACAAA+CGG | - | chr4_1:82098119-82098138 | Msa0577790:intron | 45.0% | |
| CCTCCGAAGCAAATTCCAAA+TGG | + | chr4_1:82098329-82098348 | None:intergenic | 45.0% | |
| ! | CCATTTGGAATTTGCTTCGG+AGG | - | chr4_1:82098326-82098345 | Msa0577790:CDS | 45.0% |
| ACTTCTAACTTTCGAAGGGG+AGG | + | chr4_1:82098425-82098444 | None:intergenic | 45.0% | |
| ATTCATGGGAATTGAAGGGG+GGG | + | chr4_1:82098457-82098476 | None:intergenic | 45.0% | |
| AAGAGAGCTAGCACATGCTG+AGG | + | chr4_1:82095277-82095296 | None:intergenic | 50.0% | |
| !! | CTCCTTTGAGAACCGGGTTT+TGG | + | chr4_1:82095479-82095498 | None:intergenic | 50.0% |
| ! | CCCGGTTCTCAAAGGAGTAT+TGG | - | chr4_1:82095482-82095501 | Msa0577790:three_prime_UTR | 50.0% |
| GTGCTTTGGTCCTTCTCTCT+TGG | + | chr4_1:82095548-82095567 | None:intergenic | 50.0% | |
| TCAGTAGTGCCAAGAGATGC+AGG | - | chr4_1:82095672-82095691 | Msa0577790:CDS | 50.0% | |
| AGGTCTAATGGAGCTCCTAG+CGG | - | chr4_1:82095768-82095787 | Msa0577790:CDS | 50.0% | |
| TGCTAGAGGTGGACAAGGAA+AGG | - | chr4_1:82095797-82095816 | Msa0577790:CDS | 50.0% | |
| TCCCATCCCTATAAGCTCAG+TGG | + | chr4_1:82096143-82096162 | None:intergenic | 50.0% | |
| GCCGGCCTAATAAGCTTAAG+AGG | - | chr4_1:82096571-82096590 | Msa0577790:CDS | 50.0% | |
| AACTTAAAAGGCCAGGCCAC+AGG | + | chr4_1:82096609-82096628 | None:intergenic | 50.0% | |
| !! | GTCCAATGGACTGAAGCTAG+TGG | - | chr4_1:82096849-82096868 | Msa0577790:CDS | 50.0% |
| GGTCCACTACTTGATCCACA+AGG | + | chr4_1:82097042-82097061 | None:intergenic | 50.0% | |
| GTAGGCATCAAACCAACGGT+TGG | - | chr4_1:82097153-82097172 | Msa0577790:intron | 50.0% | |
| CTACTAGTGAGACCAACCGT+TGG | + | chr4_1:82097168-82097187 | None:intergenic | 50.0% | |
| ! | GTTGGTCTCACTAGTAGAGC+AGG | - | chr4_1:82097171-82097190 | Msa0577790:intron | 50.0% |
| GTGTCTTGCCTTGGGCTAAT+TGG | + | chr4_1:82097204-82097223 | None:intergenic | 50.0% | |
| ACCCAACTGTGTCTTGCCTT+GGG | + | chr4_1:82097212-82097231 | None:intergenic | 50.0% | |
| TACCCAACTGTGTCTTGCCT+TGG | + | chr4_1:82097213-82097232 | None:intergenic | 50.0% | |
| GAGAGGAAAGAGATTGGGAG+TGG | - | chr4_1:82097513-82097532 | Msa0577790:intron | 50.0% | |
| CTTGCCATTGGAGGTTATCC+TGG | - | chr4_1:82098269-82098288 | Msa0577790:CDS | 50.0% | |
| CACTCCAGGATAACCTCCAA+TGG | + | chr4_1:82098276-82098295 | None:intergenic | 50.0% | |
| TCTAACTTTCGAAGGGGAGG+TGG | + | chr4_1:82098422-82098441 | None:intergenic | 50.0% | |
| AGCTCACCAGTACCAACAGT+TGG | - | chr4_1:82098786-82098805 | Msa0577790:exon | 50.0% | |
| ! | GAGAGAAGGACCAAAGCACC+TGG | - | chr4_1:82095549-82095568 | Msa0577790:three_prime_UTR | 55.0% |
| ! | GGAAGGCCACTTTGAGTGAG+TGG | - | chr4_1:82095736-82095755 | Msa0577790:CDS | 55.0% |
| CTAATGGAGCTCCTAGCGGT+TGG | - | chr4_1:82095772-82095791 | Msa0577790:CDS | 55.0% | |
| ! | TGGAGTGCTAGAGGTGGACA+AGG | - | chr4_1:82095792-82095811 | Msa0577790:CDS | 55.0% |
| GGAATAGGCTAGGCCAAGCT+AGG | - | chr4_1:82096160-82096179 | Msa0577790:CDS | 55.0% | |
| AGGCCAAGCTAGGCTTTGCA+AGG | - | chr4_1:82096170-82096189 | Msa0577790:CDS | 55.0% | |
| AGGCCTTGCAAAGCCTAGCT+TGG | + | chr4_1:82096176-82096195 | None:intergenic | 55.0% | |
| GGCTTTGCAAGGCCTAAGTC+TGG | - | chr4_1:82096181-82096200 | Msa0577790:CDS | 55.0% | |
| !! | GAGGCTTTTTGAGAGGCCTG+TGG | - | chr4_1:82096590-82096609 | Msa0577790:CDS | 55.0% |
| !! | TTTTTGAGAGGCCTGTGGCC+TGG | - | chr4_1:82096595-82096614 | Msa0577790:CDS | 55.0% |
| GAAAAAAGTCTGGCCTGGCC+TGG | - | chr4_1:82096668-82096687 | Msa0577790:CDS | 55.0% | |
| ACAAGGGATGGGAATAGGCC+AGG | + | chr4_1:82096731-82096750 | None:intergenic | 55.0% | |
| GGCCTATTCCCATCCCTTGT+CGG | - | chr4_1:82096731-82096750 | Msa0577790:intron | 55.0% | |
| GCCTATTCCCATCCCTTGTC+GGG | - | chr4_1:82096732-82096751 | Msa0577790:intron | 55.0% | |
| CCTATTCCCATCCCTTGTCG+GGG | - | chr4_1:82096733-82096752 | Msa0577790:intron | 55.0% | |
| GAAGTTCCCCGACAAGGGAT+GGG | + | chr4_1:82096742-82096761 | None:intergenic | 55.0% | |
| ACTGCGAAGTTCCCCGACAA+GGG | + | chr4_1:82096747-82096766 | None:intergenic | 55.0% | |
| AACTGCGAAGTTCCCCGACA+AGG | + | chr4_1:82096748-82096767 | None:intergenic | 55.0% | |
| AGCCCAAGGCAAGACACAGT+TGG | - | chr4_1:82097207-82097226 | Msa0577790:intron | 55.0% | |
| GCCCAAGGCAAGACACAGTT+GGG | - | chr4_1:82097208-82097227 | Msa0577790:intron | 55.0% | |
| TGGCCAAGATCTCATGCTGC+AGG | - | chr4_1:82098103-82098122 | Msa0577790:intron | 55.0% | |
| CAGCCTGCAGCATGAGATCT+TGG | + | chr4_1:82098109-82098128 | None:intergenic | 55.0% | |
| CCTGCTGGAACAATCACTCC+AGG | + | chr4_1:82098290-82098309 | None:intergenic | 55.0% | |
| CCTGGAGTGATTGTTCCAGC+AGG | - | chr4_1:82098287-82098306 | Msa0577790:CDS | 55.0% | |
| CCTCTAGCACTCCAACCGCT+AGG | + | chr4_1:82095786-82095805 | None:intergenic | 60.0% | |
| ! | CCTAGCGGTTGGAGTGCTAG+AGG | - | chr4_1:82095783-82095802 | Msa0577790:CDS | 60.0% |
| ! | AGCGGTTGGAGTGCTAGAGG+TGG | - | chr4_1:82095786-82095805 | Msa0577790:CDS | 60.0% |
| CCCCGACAAGGGATGGGAAT+AGG | + | chr4_1:82096736-82096755 | None:intergenic | 60.0% | |
| CGAAGTTCCCCGACAAGGGA+TGG | + | chr4_1:82096743-82096762 | None:intergenic | 60.0% | |
| CCTACGGCCTAGCCTACGAC+AGG | + | chr4_1:82096694-82096713 | None:intergenic | 65.0% | |
| CCTGTCGTAGGCTAGGCCGT+AGG | - | chr4_1:82096691-82096710 | Msa0577790:intron | 65.0% | |
| ATAGGCCAGGCCGGCCTACA+GGG | + | chr4_1:82096718-82096737 | None:intergenic | 65.0% | |
| AATAGGCCAGGCCGGCCTAC+AGG | + | chr4_1:82096719-82096738 | None:intergenic | 65.0% | |
| GGGATGGGAATAGGCCAGGC+CGG | + | chr4_1:82096727-82096746 | None:intergenic | 65.0% | |
| AGCCTACGACAGGCCAGGCC+AGG | + | chr4_1:82096684-82096703 | None:intergenic | 70.0% | |
| GGCCTGGCCTGTCGTAGGCT+AGG | - | chr4_1:82096684-82096703 | Msa0577790:intron | 70.0% | |
| GGCCTAGCCTACGACAGGCC+AGG | + | chr4_1:82096689-82096708 | None:intergenic | 70.0% | |
| GCTAGGCCGTAGGCCCCTGT+AGG | - | chr4_1:82096701-82096720 | Msa0577790:intron | 70.0% | |
| TAGGCCAGGCCGGCCTACAG+GGG | + | chr4_1:82096717-82096736 | None:intergenic | 70.0% | |
| GGCCTGGCCTGGCCTGTCGT+AGG | - | chr4_1:82096679-82096698 | Msa0577790:intron | 75.0% | |
| GGCCGTAGGCCCCTGTAGGC+CGG | - | chr4_1:82096705-82096724 | Msa0577790:intron | 75.0% | |
| GGCCGGCCTACAGGGGCCTA+CGG | + | chr4_1:82096710-82096729 | None:intergenic | 75.0% | |
| TAGGCCCCTGTAGGCCGGCC+TGG | - | chr4_1:82096710-82096729 | Msa0577790:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 82095257 | 82098809 | 82095257 | ID=Msa0577790;Name=Msa0577790 |
| chr4_1 | mRNA | 82095257 | 82098809 | 82095257 | ID=Msa0577790-mRNA-1;Parent=Msa0577790;Name=Msa0577790-mRNA-1;_AED=0.39;_eAED=0.39;_QI=13|1|1|1|1|1|5|361|516 |
| chr4_1 | exon | 82095257 | 82095977 | 82095257 | ID=Msa0577790-mRNA-1:exon:29723;Parent=Msa0577790-mRNA-1 |
| chr4_1 | exon | 82096154 | 82096346 | 82096154 | ID=Msa0577790-mRNA-1:exon:29722;Parent=Msa0577790-mRNA-1 |
| chr4_1 | exon | 82096458 | 82096694 | 82096458 | ID=Msa0577790-mRNA-1:exon:29721;Parent=Msa0577790-mRNA-1 |
| chr4_1 | exon | 82096837 | 82097048 | 82096837 | ID=Msa0577790-mRNA-1:exon:29720;Parent=Msa0577790-mRNA-1 |
| chr4_1 | exon | 82098248 | 82098809 | 82098248 | ID=Msa0577790-mRNA-1:exon:29719;Parent=Msa0577790-mRNA-1 |
| chr4_1 | five_prime_UTR | 82098797 | 82098809 | 82098797 | ID=Msa0577790-mRNA-1:five_prime_utr;Parent=Msa0577790-mRNA-1 |
| chr4_1 | CDS | 82098248 | 82098796 | 82098248 | ID=Msa0577790-mRNA-1:cds;Parent=Msa0577790-mRNA-1 |
| chr4_1 | CDS | 82096837 | 82097048 | 82096837 | ID=Msa0577790-mRNA-1:cds;Parent=Msa0577790-mRNA-1 |
| chr4_1 | CDS | 82096458 | 82096694 | 82096458 | ID=Msa0577790-mRNA-1:cds;Parent=Msa0577790-mRNA-1 |
| chr4_1 | CDS | 82096154 | 82096346 | 82096154 | ID=Msa0577790-mRNA-1:cds;Parent=Msa0577790-mRNA-1 |
| chr4_1 | CDS | 82095618 | 82095977 | 82095618 | ID=Msa0577790-mRNA-1:cds;Parent=Msa0577790-mRNA-1 |
| chr4_1 | three_prime_UTR | 82095257 | 82095617 | 82095257 | ID=Msa0577790-mRNA-1:three_prime_utr;Parent=Msa0577790-mRNA-1 |
| Gene Sequence |
| Protein sequence |
