AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0576410

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0576410 MtrunA17_Chr8g0390691 97.917 144 3 0 1 144 1 144 3.62e-101 295
Msa0576410 MtrunA17_Chr6g0485111 60.135 148 55 2 1 144 1 148 3.65e-55 177
Msa0576410 MtrunA17_Chr1g0169271 52.679 112 52 1 34 144 51 162 6.10e-36 128
Msa0576410 MtrunA17_Chr2g0287641 30.631 111 76 1 34 143 28 138 3.94e-14 68.2
Msa0576410 MtrunA17_Chr7g0237091 30.631 111 75 1 34 142 31 141 9.61e-12 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0576410 AT3G24460.2 62.252 151 49 2 1 144 1 150 3.11e-63 199
Msa0576410 AT3G24460.1 62.252 151 49 2 1 144 1 150 3.11e-63 199
Msa0576410 AT4G13345.3 63.699 146 48 2 1 144 1 143 1.15e-53 171
Msa0576410 AT4G13345.7 63.699 146 48 2 1 144 1 143 1.15e-53 171
Msa0576410 AT4G13345.5 63.699 146 48 2 1 144 1 143 2.44e-53 172
Msa0576410 AT4G13345.4 63.699 146 48 2 1 144 1 143 8.15e-53 172
Msa0576410 AT4G13345.1 63.699 146 48 2 1 144 1 143 1.16e-52 171
Msa0576410 AT4G13345.2 63.699 146 48 2 1 144 1 143 1.22e-52 171
Msa0576410 AT4G13345.6 63.699 146 48 2 1 144 1 143 1.22e-52 171
Msa0576410 AT2G33205.3 45.802 131 68 2 15 144 32 160 1.02e-31 115
Msa0576410 AT2G33205.4 45.802 131 68 2 15 144 32 160 1.02e-31 115
Msa0576410 AT2G33205.6 45.802 131 68 2 15 144 32 160 1.96e-31 115
Msa0576410 AT2G33205.9 45.802 131 68 2 15 144 32 160 4.46e-31 115
Msa0576410 AT2G33205.8 45.802 131 68 2 15 144 32 160 5.61e-31 115
Msa0576410 AT2G33205.5 45.802 131 68 2 15 144 32 160 5.61e-31 115
Msa0576410 AT2G33205.1 45.802 131 68 2 15 144 32 160 5.65e-31 115
Msa0576410 AT3G06170.1 30.631 111 76 1 34 143 29 139 2.01e-12 63.5
Msa0576410 AT1G16180.2 30.631 111 75 1 34 142 31 141 1.01e-11 61.6
Msa0576410 AT1G16180.1 30.631 111 75 1 34 142 31 141 1.01e-11 61.6
Msa0576410 AT2G33205.2 45.902 61 33 0 84 144 5 65 1.99e-11 60.5

Find 123 sgRNAs with CRISPR-Local

Find 400 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCGGCTTTATTCAAATTTA+TGG 0.115224 4_1:-80493373 Msa0576410:CDS
CCAGGGGAGGTGGCGCATTT+TGG 0.174364 4_1:-80493240 Msa0576410:three_prime_UTR
AAACGCTTTGTTTGTGCTTT+CGG 0.261674 4_1:+80496844 None:intergenic
GATGCTTAGCCAGTCTGTTT+TGG 0.263287 4_1:+80492021 None:intergenic
ATTCAACCTACAGGATTAAA+AGG 0.275412 4_1:-80493785 Msa0576410:intron
TTTATATTGTCTTCCTTTGT+TGG 0.276198 4_1:-80492223 Msa0576410:three_prime_UTR
CTGGACAGAATCAATGTTTC+TGG 0.284057 4_1:-80490051 Msa0576410:three_prime_UTR
TATATGTACATCTGAGATTT+GGG 0.294443 4_1:+80490168 None:intergenic
CTATATGTACATCTGAGATT+TGG 0.304588 4_1:+80490167 None:intergenic
TGCACGCATACTGGTTGAAT+TGG 0.334492 4_1:-80490022 Msa0576410:three_prime_UTR
TCCAAGGATTGGATGCATTT+CGG 0.359677 4_1:+80494099 None:intergenic
CAAACAACATCACATGAATA+TGG 0.364727 4_1:+80492525 None:intergenic
TTTCTGTGTTGAAGAAGATA+TGG 0.365734 4_1:-80494192 Msa0576410:exon
GACCGCATATGTCGTCTGTT+TGG 0.370819 4_1:-80492498 Msa0576410:three_prime_UTR
TCATATCCAATGATTCTTCA+TGG 0.371838 4_1:-80494133 Msa0576410:CDS
CATAGATTCCAAATGCTTCC+AGG 0.376091 4_1:-80491606 Msa0576410:intron
TGCTGATAGCTCCAATGATA+TGG 0.380094 4_1:-80490281 Msa0576410:three_prime_UTR
TTATGCTAATTAGTTGGATT+AGG 0.382452 4_1:+80493088 None:intergenic
GTTGAAGAAGATATGGAAAC+TGG 0.390734 4_1:-80494185 Msa0576410:exon
ATGTGGGGTGGACCAGCACC+TGG 0.391123 4_1:-80490953 Msa0576410:three_prime_UTR
CAAGGGTGGAAAAGACTGTT+TGG 0.394075 4_1:-80493759 Msa0576410:CDS
TATGCTAACCTGGAAGCATT+TGG 0.394190 4_1:+80491598 None:intergenic
GATGATGTACCATATGGTTA+TGG 0.398590 4_1:-80491483 Msa0576410:three_prime_UTR
AGCTGATTATGCTAATTAGT+TGG 0.402425 4_1:+80493082 None:intergenic
TGCTGGCTAATCTGTTGGCA+TGG 0.404877 4_1:-80494046 Msa0576410:CDS
GGAAACAGAGAGAAATTGTT+GGG 0.407075 4_1:+80496820 None:intergenic
GCATGGGCTGCTCGTGACTA+TGG 0.408101 4_1:-80494029 Msa0576410:CDS
TGTCTGCACTTCCATATCAT+TGG 0.413613 4_1:+80490270 None:intergenic
ATTCTAACTCCAGGGCTGAT+GGG 0.414558 4_1:-80492248 Msa0576410:three_prime_UTR
CTGCTGGTGTATCATCCTTC+CGG 0.415225 4_1:+80491508 None:intergenic
TCGTAGTGCTTTAACAGAAA+TGG 0.420048 4_1:-80494006 Msa0576410:CDS
TGGCACAAATGCACGCATAC+TGG 0.421483 4_1:-80490031 Msa0576410:three_prime_UTR
TCATCTTCTTCGTCTTTCTC+AGG 0.423423 4_1:-80496685 Msa0576410:intron
TACTATTCTGACCCAGGTGC+TGG 0.425466 4_1:+80490941 None:intergenic
TATTCTAACTCCAGGGCTGA+TGG 0.432842 4_1:-80492249 Msa0576410:three_prime_UTR
TTGGCAAACCTGCCTTCTAA+TGG 0.434037 4_1:+80492196 None:intergenic
TCCGAAATGCATCCAATCCT+TGG 0.436210 4_1:-80494100 Msa0576410:CDS
AATCTCAGATGTACATATAG+TGG 0.439695 4_1:-80490164 Msa0576410:three_prime_UTR
ACTGAACCATGAAGAATCAT+TGG 0.442403 4_1:+80494127 None:intergenic
CCAAAATGCGCCACCTCCCC+TGG 0.443467 4_1:+80493240 None:intergenic
CTGCTGGAGAAAACTGCATC+AGG 0.444077 4_1:-80492060 Msa0576410:three_prime_UTR
AAGGGTGGAAAAGACTGTTT+GGG 0.455796 4_1:-80493758 Msa0576410:CDS
TTTGTTGGTGCGCCATTAGA+AGG 0.456775 4_1:-80492208 Msa0576410:intron
GTGACACATGTACAGGTAAG+AGG 0.462256 4_1:+80489930 None:intergenic
TGCTAATTAGTTGGATTAGG+AGG 0.469122 4_1:+80493091 None:intergenic
ACAGTCCTTTCACTTTATGA+AGG 0.472907 4_1:-80489972 Msa0576410:three_prime_UTR
TTCTAACTCCAGGGCTGATG+GGG 0.479038 4_1:-80492247 Msa0576410:three_prime_UTR
GCATATGTCGTCTGTTTGGT+GGG 0.483780 4_1:-80492494 Msa0576410:three_prime_UTR
ACCATAAATTTGAATAAAGC+CGG 0.484335 4_1:+80493372 None:intergenic
CGCATATGTCGTCTGTTTGG+TGG 0.485949 4_1:-80492495 Msa0576410:three_prime_UTR
ACTCCTCCAGCTCTGAAGAT+AGG 0.488452 4_1:-80490141 Msa0576410:three_prime_UTR
GATTGTTCTTTAGTGTGCAC+TGG 0.494008 4_1:-80490070 Msa0576410:three_prime_UTR
CAGTCCTTTCACTTTATGAA+GGG 0.503149 4_1:-80489971 Msa0576410:three_prime_UTR
TATCTGCAATAGGTTAATGC+TGG 0.506107 4_1:-80492272 Msa0576410:intron
GCTGGCTAATCTGTTGGCAT+GGG 0.507922 4_1:-80494045 Msa0576410:CDS
CAGAATAGTAAATGAATGGC+TGG 0.508449 4_1:-80490928 Msa0576410:three_prime_UTR
TTGCTATGCTATTGGTTGGA+TGG 0.512496 4_1:-80491422 Msa0576410:three_prime_UTR
TTATCTTTCAACAAGCCTCC+AGG 0.513952 4_1:-80493340 Msa0576410:three_prime_UTR
ATATAAAGCCCCATCAGCCC+TGG 0.514306 4_1:+80492239 None:intergenic
CGAGTGAACACTGGAGCGGC+TGG 0.514328 4_1:+80496740 None:intergenic
TTGAGAAGGCAAGAAGGCTC+TGG 0.515041 4_1:+80492443 None:intergenic
TTCTAATGGCGCACCAACAA+AGG 0.520794 4_1:+80492210 None:intergenic
TGGAAACAGAGAGAAATTGT+TGG 0.521277 4_1:+80496819 None:intergenic
TTTCCTATCTTCAGAGCTGG+AGG 0.523292 4_1:+80490138 None:intergenic
ACAAAATTTCATAACTAGCA+TGG 0.526664 4_1:+80490215 None:intergenic
GCAGAGGATGATGTACCATA+TGG 0.526809 4_1:-80491489 Msa0576410:three_prime_UTR
GGTTAGTCAAGATTGCTTTG+TGG 0.532718 4_1:-80493429 Msa0576410:CDS
AATGCTGGTATTCTAACTCC+AGG 0.540072 4_1:-80492257 Msa0576410:three_prime_UTR
AAGAGAAACACATGGCACTC+TGG 0.544859 4_1:-80493457 Msa0576410:CDS
GGGTCAGAATAGTAAATGAA+TGG 0.544936 4_1:-80490932 Msa0576410:three_prime_UTR
CTACGCAGTACATGAATGAA+TGG 0.545736 4_1:+80494217 None:intergenic
ATATCTTGCCATCCAAGGAT+TGG 0.547635 4_1:+80494088 None:intergenic
TTCATTTACTATTCTGACCC+AGG 0.547987 4_1:+80490935 None:intergenic
ATTGTATCAAAGGAATTACT+AGG 0.550438 4_1:+80493270 None:intergenic
TAATCCCTTCATAAAGTGAA+AGG 0.551009 4_1:+80489967 None:intergenic
TTTGTATGCAGTGAACCTGC+TGG 0.553034 4_1:-80492076 Msa0576410:intron
TACAGGATTAAAAGGATGCA+AGG 0.553690 4_1:-80493777 Msa0576410:intron
GAGACACGCTGGTCATGAGT+TGG 0.556515 4_1:+80492387 None:intergenic
TATGGTACATCATCCTCTGC+TGG 0.564240 4_1:+80491492 None:intergenic
TGGTAAAAGAATTGTATCAA+AGG 0.567821 4_1:+80493260 None:intergenic
ATCTATTAACGAGTGAACAC+TGG 0.570516 4_1:+80496731 None:intergenic
GAGAAAGACGAAGAAGATGA+AGG 0.572170 4_1:+80496688 None:intergenic
TTTCTCAGTGACACATGTAC+AGG 0.572489 4_1:+80489923 None:intergenic
TAAGCATATCTTGCCATCCA+AGG 0.572921 4_1:+80494083 None:intergenic
TAATGAAGAAAATGTTGAGA+AGG 0.573025 4_1:+80492429 None:intergenic
GAAGAAGATGAAGGCAATGG+TGG 0.578051 4_1:+80496697 None:intergenic
AAATGCATCCAATCCTTGGA+TGG 0.580170 4_1:-80494096 Msa0576410:CDS
ACAGATTATGCATTTATACC+TGG 0.583877 4_1:+80493322 None:intergenic
TGCAGATGGACAATCGATGT+GGG 0.585081 4_1:-80490969 Msa0576410:intron
ATATGGAAGTGCAGACAAGT+TGG 0.587366 4_1:-80490264 Msa0576410:three_prime_UTR
ACTCTGCACCCAAAACAGAC+TGG 0.587891 4_1:-80492030 Msa0576410:three_prime_UTR
GAAACACATGGCACTCTGGA+TGG 0.590908 4_1:-80493453 Msa0576410:CDS
AGCAAAATACATTGCTCCCG+TGG 0.597392 4_1:+80491440 None:intergenic
TTGAAGAAGATATGGAAACT+GGG 0.607550 4_1:-80494184 Msa0576410:exon
AAAATGTTGAGAAGGCAAGA+AGG 0.607677 4_1:+80492437 None:intergenic
GCATAATCAGCTTCATCACA+TGG 0.608507 4_1:-80493071 Msa0576410:three_prime_UTR
CATATGTCGTCTGTTTGGTG+GGG 0.610341 4_1:-80492493 Msa0576410:three_prime_UTR
CTGCAGATGGACAATCGATG+TGG 0.615803 4_1:-80490970 Msa0576410:intron
CATATCCCTGCAGTTCCGGA+AGG 0.616238 4_1:-80491523 Msa0576410:intron
GGATTAAAAGGATGCAAGGG+TGG 0.618040 4_1:-80493773 Msa0576410:CDS
GAAACTGGGGAAAGCAACAA+TGG 0.619670 4_1:-80494170 Msa0576410:CDS
GATTATGCATTTATACCTGG+AGG 0.629309 4_1:+80493325 None:intergenic
TAAATTTGAATAAAGCCGGA+AGG 0.631409 4_1:+80493376 None:intergenic
TGACACATGTACAGGTAAGA+GGG 0.634087 4_1:+80489931 None:intergenic
TGTGGGGTGGACCAGCACCT+GGG 0.634750 4_1:-80490952 Msa0576410:three_prime_UTR
GACGAAGAAGATGAAGGCAA+TGG 0.635154 4_1:+80496694 None:intergenic
TTTCGGGTGCAGAGACACGC+TGG 0.640882 4_1:+80492376 None:intergenic
ACAGGATTAAAAGGATGCAA+GGG 0.645616 4_1:-80493776 Msa0576410:intron
TGAAGAAGATATGGAAACTG+GGG 0.648363 4_1:-80494183 Msa0576410:exon
GAAGGATGATACACCAGCAG+AGG 0.655362 4_1:-80491505 Msa0576410:three_prime_UTR
ATGCTGGTATTCTAACTCCA+GGG 0.658480 4_1:-80492256 Msa0576410:three_prime_UTR
ACACATGGCACTCTGGATGG+TGG 0.661486 4_1:-80493450 Msa0576410:CDS
GAAACAGAGAGAAATTGTTG+GGG 0.664760 4_1:+80496821 None:intergenic
ATATGTACATCTGAGATTTG+GGG 0.667159 4_1:+80490169 None:intergenic
GATGGACAATCGATGTGGGG+TGG 0.670497 4_1:-80490965 Msa0576410:three_prime_UTR
AAAGCAACAATGGTAATGAG+AGG 0.674245 4_1:-80494160 Msa0576410:CDS
TTAACGAGTGAACACTGGAG+CGG 0.677562 4_1:+80496736 None:intergenic
AAGGACTGTATATCTTCATG+CGG 0.679521 4_1:+80489986 None:intergenic
CACCAAACAGACGACATATG+CGG 0.707786 4_1:+80492496 None:intergenic
AGGGTGGAAAAGACTGTTTG+GGG 0.732005 4_1:-80493757 Msa0576410:CDS
GCAGATGGACAATCGATGTG+GGG 0.732619 4_1:-80490968 Msa0576410:intron
GGGTGGAAAAGACTGTTTGG+GGG 0.746165 4_1:-80493756 Msa0576410:CDS
TAAAGCAAAAGAGAAACACA+TGG 0.747169 4_1:-80493465 Msa0576410:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTCAAATAATATATATTGAT+CGG + chr4_1:80491245-80491264 None:intergenic 10.0%
!!! AATTTATTTAGGATAATATA+AGG - chr4_1:80494103-80494122 Msa0576410:CDS 10.0%
!! AATCGATAATTAAAAAATAA+TGG + chr4_1:80495837-80495856 None:intergenic 10.0%
!!! ATGTTTTTTTCACATTTTTT+TGG - chr4_1:80490203-80490222 Msa0576410:three_prime_UTR 15.0%
!!! TTATTCTTTTCTAATTTTCT+CGG + chr4_1:80490349-80490368 None:intergenic 15.0%
!! GAAAATTAGAAAAGAATAAA+AGG - chr4_1:80490350-80490369 Msa0576410:intron 15.0%
!!! CTCTTTTTTCAAATAATATA+CGG + chr4_1:80491277-80491296 None:intergenic 15.0%
!!! TATTTAGAGTAATATGAATT+AGG - chr4_1:80491378-80491397 Msa0576410:intron 15.0%
!!! CTTATAATCTTATTTATTTG+TGG - chr4_1:80491762-80491781 Msa0576410:intron 15.0%
!! TAGTTATTCATATTCATTTA+TGG - chr4_1:80493089-80493108 Msa0576410:three_prime_UTR 15.0%
!! TTTATATAATATAAGCACAA+TGG + chr4_1:80493852-80493871 None:intergenic 15.0%
!! TGTGCTTATATTATATAAAA+AGG - chr4_1:80493853-80493872 Msa0576410:intron 15.0%
!!! AAAATGTTTTAAACAAGTAA+AGG + chr4_1:80494375-80494394 None:intergenic 15.0%
!! AAGTAATAAGATAGATATAA+AGG + chr4_1:80494912-80494931 None:intergenic 15.0%
!!! TATATCTATCTTATTACTTT+TGG - chr4_1:80494913-80494932 Msa0576410:intron 15.0%
!!! TTAGCTTGAATTTTATTATT+AGG - chr4_1:80495138-80495157 Msa0576410:intron 15.0%
!!! TTTCAATAAAAATGTTTTTG+TGG + chr4_1:80495605-80495624 None:intergenic 15.0%
!! TAATTTAAATCTTTGTCAAA+GGG + chr4_1:80496152-80496171 None:intergenic 15.0%
!! ATAATTTAAATCTTTGTCAA+AGG + chr4_1:80496153-80496172 None:intergenic 15.0%
!!! AAATTGTTTTAAGAGTAAAA+AGG + chr4_1:80496386-80496405 None:intergenic 15.0%
!!! AAGAGTATAAAGATGAAAAA+TGG + chr4_1:80489907-80489926 None:intergenic 20.0%
!! AAAATTAAAAGAGGAATGAA+AGG + chr4_1:80490122-80490141 None:intergenic 20.0%
!! AAGTTTAAATATAGAAAGGA+GGG + chr4_1:80490695-80490714 None:intergenic 20.0%
!! TAAGTTTAAATATAGAAAGG+AGG + chr4_1:80490696-80490715 None:intergenic 20.0%
!! GAGTAAGTTTAAATATAGAA+AGG + chr4_1:80490699-80490718 None:intergenic 20.0%
!! ATACACAAAATATTATTGAG+AGG + chr4_1:80490793-80490812 None:intergenic 20.0%
!! AATTAATTGCAAAAGTAACT+CGG - chr4_1:80490892-80490911 Msa0576410:intron 20.0%
!! ATTTACCATTGAAAATCATT+GGG + chr4_1:80490960-80490979 None:intergenic 20.0%
!!! ATTGAATTTTACAAGCAAAA+AGG + chr4_1:80491015-80491034 None:intergenic 20.0%
!!! ACTCTTATTTTTATCTTCTA+TGG - chr4_1:80491075-80491094 Msa0576410:intron 20.0%
!! TTATGAAATATTTGCTTTAG+CGG + chr4_1:80491566-80491585 None:intergenic 20.0%
!!! ATTTTTGTCAATCATATTGA+TGG + chr4_1:80491653-80491672 None:intergenic 20.0%
!!! AGAATCTTTCAAAAAAGTAT+TGG - chr4_1:80492069-80492088 Msa0576410:intron 20.0%
!! ACTGAAAAACAATCAAAAAA+TGG - chr4_1:80492210-80492229 Msa0576410:three_prime_UTR 20.0%
!!! TTAGATTTGATTTAAACCAA+TGG + chr4_1:80492892-80492911 None:intergenic 20.0%
!! TAATAATAAATTCAACCTAC+AGG - chr4_1:80492909-80492928 Msa0576410:intron 20.0%
!! TTTCATGTATATAACTGAAA+AGG + chr4_1:80493012-80493031 None:intergenic 20.0%
!!! AGTACTTTTGACAATAAATT+TGG + chr4_1:80493904-80493923 None:intergenic 20.0%
!!! ACAAGTTGATCAATTTATTT+AGG - chr4_1:80494092-80494111 Msa0576410:CDS 20.0%
!! TAAAAAATGGAAATTAAGAG+AGG + chr4_1:80494578-80494597 None:intergenic 20.0%
!!! AACATTAGGCTATAATTTTT+GGG + chr4_1:80494871-80494890 None:intergenic 20.0%
!!! AAACATTAGGCTATAATTTT+TGG + chr4_1:80494872-80494891 None:intergenic 20.0%
!!! AATACATTTCTTTTCATTGT+TGG - chr4_1:80494994-80495013 Msa0576410:intron 20.0%
!! CGATAATTAAAAAATAATGG+AGG + chr4_1:80495834-80495853 None:intergenic 20.0%
!!! CGATTTAAAAGAATGTTTTT+TGG - chr4_1:80495852-80495871 Msa0576410:intron 20.0%
!!! ATTGCTTTATTTAAGCAATT+TGG + chr4_1:80496271-80496290 None:intergenic 20.0%
!!! TTTTATTAACTCAGATTAAC+AGG - chr4_1:80496344-80496363 Msa0576410:intron 20.0%
!! TTTATTAACTCAGATTAACA+GGG - chr4_1:80496345-80496364 Msa0576410:intron 20.0%
!!! AACAATTTTTGTTGATAGTA+TGG - chr4_1:80496398-80496417 Msa0576410:intron 20.0%
!! GAATGAAAGGCATATAAAAA+TGG + chr4_1:80490109-80490128 None:intergenic 25.0%
! CAAATGTGGAAAATTAAAAG+AGG + chr4_1:80490131-80490150 None:intergenic 25.0%
! GAACAAATTATAGACAAATG+TGG + chr4_1:80490145-80490164 None:intergenic 25.0%
! AATAAAAGGAAAAGTTGAGA+TGG - chr4_1:80490364-80490383 Msa0576410:intron 25.0%
! ATTATCATATGCTTTAATCG+AGG - chr4_1:80490594-80490613 Msa0576410:intron 25.0%
! AAATAGAATTGTGATTGCAT+CGG + chr4_1:80490629-80490648 None:intergenic 25.0%
!! TGTATAATGAGTTTTCCTAT+CGG - chr4_1:80490808-80490827 Msa0576410:intron 25.0%
! CATTTACCATTGAAAATCAT+TGG + chr4_1:80490961-80490980 None:intergenic 25.0%
! GGCAGAATTATAGTATTAAA+AGG - chr4_1:80491096-80491115 Msa0576410:intron 25.0%
! TTAGAATTTCACAATAAACG+AGG - chr4_1:80491202-80491221 Msa0576410:intron 25.0%
!!! ATATAGTTTACTTTTGCCAA+AGG - chr4_1:80491348-80491367 Msa0576410:intron 25.0%
! CTCTAAATATAAGTTTCCTT+TGG + chr4_1:80491367-80491386 None:intergenic 25.0%
! AAAGAGATTAAGCATATGTT+TGG - chr4_1:80491428-80491447 Msa0576410:three_prime_UTR 25.0%
!!! TAGTTTTTTAGCTTCTCTTA+CGG + chr4_1:80491497-80491516 None:intergenic 25.0%
!!! CTCTTATTTATTTTCCACAA+TGG + chr4_1:80491742-80491761 None:intergenic 25.0%
! GACAATGCAATATATATGAA+AGG - chr4_1:80491868-80491887 Msa0576410:intron 25.0%
! TGCAATATATATGAAAGGTA+CGG - chr4_1:80491873-80491892 Msa0576410:intron 25.0%
! GTTACATATACTATTGATGA+TGG + chr4_1:80491916-80491935 None:intergenic 25.0%
! GTTACATATACTATTGATGA+TGG + chr4_1:80491916-80491935 None:intergenic 25.0%
! ATCTTAGTACTACATAGTAT+TGG - chr4_1:80492045-80492064 Msa0576410:three_prime_UTR 25.0%
! ATCAAAAGTAACGACATTAT+TGG - chr4_1:80492107-80492126 Msa0576410:intron 25.0%
! CAATGAAAGCAACAATATAT+TGG + chr4_1:80492841-80492860 None:intergenic 25.0%
!!! ATATATTGTTGCTTTCATTG+AGG - chr4_1:80492841-80492860 Msa0576410:intron 25.0%
! TACATGAAATTAGTCACTAA+AGG - chr4_1:80493023-80493042 Msa0576410:intron 25.0%
!!! ATAATGTTTTTGTCAACTAC+TGG - chr4_1:80493204-80493223 Msa0576410:intron 25.0%
! ACCATAAATTTGAATAAAGC+CGG + chr4_1:80493334-80493353 None:intergenic 25.0%
! ATTGTATCAAAGGAATTACT+AGG + chr4_1:80493436-80493455 None:intergenic 25.0%
! TGGTAAAAGAATTGTATCAA+AGG + chr4_1:80493446-80493465 None:intergenic 25.0%
!! TTTGATACAATTCTTTTACC+AGG - chr4_1:80493445-80493464 Msa0576410:CDS 25.0%
!! TTGATACAATTCTTTTACCA+GGG - chr4_1:80493446-80493465 Msa0576410:CDS 25.0%
! CCATCATATATAAGATTAAG+AGG + chr4_1:80493512-80493531 None:intergenic 25.0%
! CCTCTTAATCTTATATATGA+TGG - chr4_1:80493509-80493528 Msa0576410:CDS 25.0%
! TTATGCTAATTAGTTGGATT+AGG + chr4_1:80493618-80493637 None:intergenic 25.0%
! AATCTCAAGCATATTATTCA+TGG + chr4_1:80493738-80493757 None:intergenic 25.0%
! ATAGAAAAAAACCACTAATC+TGG - chr4_1:80493998-80494017 Msa0576410:intron 25.0%
! TAATGAAGAAAATGTTGAGA+AGG + chr4_1:80494277-80494296 None:intergenic 25.0%
!! TCAACATTTTCTTCATTACT+TGG - chr4_1:80494279-80494298 Msa0576410:five_prime_UTR 25.0%
!!! GTTTTAAACAAGTAAAGGTA+TGG + chr4_1:80494370-80494389 None:intergenic 25.0%
! TAACCTATTGCAGATAAAAT+TGG + chr4_1:80494427-80494446 None:intergenic 25.0%
! TTTATATTGTCTTCCTTTGT+TGG - chr4_1:80494480-80494499 Msa0576410:intron 25.0%
!!! CTTATTTTATATTTGAGCGT+CGG - chr4_1:80494598-80494617 Msa0576410:intron 25.0%
!!! TTATTTTATATTTGAGCGTC+GGG - chr4_1:80494599-80494618 Msa0576410:intron 25.0%
!! TTTTCATGGCATTTATTTGA+TGG + chr4_1:80494836-80494855 None:intergenic 25.0%
! AACAATAGACTAGAAACATT+AGG + chr4_1:80494885-80494904 None:intergenic 25.0%
!!! AATGTATTTTGCTATGCTAT+TGG - chr4_1:80495273-80495292 Msa0576410:intron 25.0%
! AACAAGAAACCATATGATAT+GGG + chr4_1:80495358-80495377 None:intergenic 25.0%
! AAACAAGAAACCATATGATA+TGG + chr4_1:80495359-80495378 None:intergenic 25.0%
! TCAATGTAGAAATAAGAAAC+AGG - chr4_1:80495390-80495409 Msa0576410:intron 25.0%
! CAATGTAGAAATAAGAAACA+GGG - chr4_1:80495391-80495410 Msa0576410:intron 25.0%
! AATGTAGAAATAAGAAACAG+GGG - chr4_1:80495392-80495411 Msa0576410:intron 25.0%
! TGATCATTGATGAATAACAA+TGG + chr4_1:80495438-80495457 None:intergenic 25.0%
! AAGACAGCTATAAAACTTTA+CGG + chr4_1:80495502-80495521 None:intergenic 25.0%
!! TAAATGTTATAGCAAGTTGA+TGG - chr4_1:80495695-80495714 Msa0576410:intron 25.0%
!!! TGTTTTTTGGAAAGTTAGAA+AGG - chr4_1:80495865-80495884 Msa0576410:intron 25.0%
!!! GTTTTTTGGAAAGTTAGAAA+GGG - chr4_1:80495866-80495885 Msa0576410:intron 25.0%
! TTATATGGAAATGAGTAGTT+AGG - chr4_1:80495898-80495917 Msa0576410:intron 25.0%
! TATATGGAAATGAGTAGTTA+GGG - chr4_1:80495899-80495918 Msa0576410:intron 25.0%
! GCATGCAAATAAATAATTTG+AGG + chr4_1:80496079-80496098 None:intergenic 25.0%
!!! TATGACTTAGTTTTGTTATG+TGG - chr4_1:80496204-80496223 Msa0576410:intron 25.0%
!!! ATGACTTAGTTTTGTTATGT+GGG - chr4_1:80496205-80496224 Msa0576410:intron 25.0%
! TTAAGCAATTTGGTTAAATC+AGG + chr4_1:80496261-80496280 None:intergenic 25.0%
! ACAAAATTTCATAACTAGCA+TGG + chr4_1:80496491-80496510 None:intergenic 25.0%
!! TATATGTACATCTGAGATTT+GGG + chr4_1:80496538-80496557 None:intergenic 25.0%
!!! GTTTTTCAGTTTGAATTTCA+TGG + chr4_1:80496612-80496631 None:intergenic 25.0%
GCATTTCTTTCTTCAATTGT+TGG - chr4_1:80490050-80490069 Msa0576410:three_prime_UTR 30.0%
CATTCAATACTCTTCTTATC+TGG + chr4_1:80490292-80490311 None:intergenic 30.0%
! GTATAATGAGTTTTCCTATC+GGG - chr4_1:80490809-80490828 Msa0576410:intron 30.0%
! TATAATGAGTTTTCCTATCG+GGG - chr4_1:80490810-80490829 Msa0576410:intron 30.0%
AAAAGTAACTCGGATGTTAA+AGG - chr4_1:80490902-80490921 Msa0576410:intron 30.0%
AAAGTAACTCGGATGTTAAA+GGG - chr4_1:80490903-80490922 Msa0576410:intron 30.0%
AGATTAAGCATATGTTTGGT+TGG - chr4_1:80491432-80491451 Msa0576410:three_prime_UTR 30.0%
GATTAAGCATATGTTTGGTT+GGG - chr4_1:80491433-80491452 Msa0576410:three_prime_UTR 30.0%
TATATTAGTGTGATCCATTG+TGG - chr4_1:80491725-80491744 Msa0576410:intron 30.0%
! GCAATATATATGAAAGGTAC+GGG - chr4_1:80491874-80491893 Msa0576410:intron 30.0%
! CAATATATATGAAAGGTACG+GGG - chr4_1:80491875-80491894 Msa0576410:intron 30.0%
TATACTCTCTTATGAAGGTT+TGG + chr4_1:80492255-80492274 None:intergenic 30.0%
CAACATATACTCTCTTATGA+AGG + chr4_1:80492260-80492279 None:intergenic 30.0%
CAGTCACATGATTACTTATA+CGG - chr4_1:80492343-80492362 Msa0576410:intron 30.0%
! TTTTCTGCATTACAGTATAG+AGG - chr4_1:80492409-80492428 Msa0576410:three_prime_UTR 30.0%
TTTCTGTGTTGAAGAAGATA+TGG - chr4_1:80492511-80492530 Msa0576410:three_prime_UTR 30.0%
TTGAAGAAGATATGGAAACT+GGG - chr4_1:80492519-80492538 Msa0576410:three_prime_UTR 30.0%
TCATATCCAATGATTCTTCA+TGG - chr4_1:80492570-80492589 Msa0576410:intron 30.0%
GGCTAAATGATATATGACAA+TGG + chr4_1:80492748-80492767 None:intergenic 30.0%
!! CACACAATTTGTTGGTTAAA+TGG + chr4_1:80492806-80492825 None:intergenic 30.0%
AAGTAGAACACACAATTTGT+TGG + chr4_1:80492814-80492833 None:intergenic 30.0%
GAAAGCAACAATATATTGGA+TGG + chr4_1:80492837-80492856 None:intergenic 30.0%
TCATATGAATATGATGCCAT+TGG - chr4_1:80492873-80492892 Msa0576410:intron 30.0%
ATTCAACCTACAGGATTAAA+AGG - chr4_1:80492918-80492937 Msa0576410:intron 30.0%
! TCACTAAAGGCTTTGTATAA+AGG - chr4_1:80493036-80493055 Msa0576410:three_prime_UTR 30.0%
TCATATTCATTTATGGTGAG+TGG - chr4_1:80493096-80493115 Msa0576410:three_prime_UTR 30.0%
TGATATAGAATGTCTGAACT+TGG + chr4_1:80493185-80493204 None:intergenic 30.0%
TAAAGCAAAAGAGAAACACA+TGG - chr4_1:80493238-80493257 Msa0576410:three_prime_UTR 30.0%
TAAATTTGAATAAAGCCGGA+AGG + chr4_1:80493330-80493349 None:intergenic 30.0%
!! TCCGGCTTTATTCAAATTTA+TGG - chr4_1:80493330-80493349 Msa0576410:three_prime_UTR 30.0%
ACAGATTATGCATTTATACC+TGG + chr4_1:80493384-80493403 None:intergenic 30.0%
! TGATACAATTCTTTTACCAG+GGG - chr4_1:80493447-80493466 Msa0576410:CDS 30.0%
AGCTGATTATGCTAATTAGT+TGG + chr4_1:80493624-80493643 None:intergenic 30.0%
!! TCAACGTTTTAACAATAGCA+AGG - chr4_1:80493791-80493810 Msa0576410:intron 30.0%
!! CAACGTTTTAACAATAGCAA+GGG - chr4_1:80493792-80493811 Msa0576410:intron 30.0%
! AAATGCAAAAGCACAGTATT+AGG + chr4_1:80494030-80494049 None:intergenic 30.0%
CAAACAACATCACATGAATA+TGG + chr4_1:80494181-80494200 None:intergenic 30.0%
!! GGATCATTTTGATGTACATT+TGG - chr4_1:80494231-80494250 Msa0576410:five_prime_UTR 30.0%
TCGTACAACATAACTTGATT+TGG - chr4_1:80494396-80494415 Msa0576410:intron 30.0%
! TCTCCAATTTTATCTGCAAT+AGG - chr4_1:80494421-80494440 Msa0576410:intron 30.0%
! TGTTGGTTGACAAATGATAA+TGG - chr4_1:80495011-80495030 Msa0576410:intron 30.0%
GGGATATGTAAGAAAGTTAT+TGG + chr4_1:80495168-80495187 None:intergenic 30.0%
TGGAAAAAACCATAACCATA+TGG + chr4_1:80495232-80495251 None:intergenic 30.0%
!!! TTTCCATTTTGTTTTTGCCA+CGG - chr4_1:80495246-80495265 Msa0576410:intron 30.0%
!! TATTTTGCTATGCTATTGGT+TGG - chr4_1:80495277-80495296 Msa0576410:intron 30.0%
!! TTATTGAGTTTTGTGGTTTC+TGG + chr4_1:80495470-80495489 None:intergenic 30.0%
! ACAACAGTTATTGAGTTTTG+TGG + chr4_1:80495477-80495496 None:intergenic 30.0%
AGACAGCTATAAAACTTTAC+GGG + chr4_1:80495501-80495520 None:intergenic 30.0%
TATCAGCTCATTGAATTACT+TGG + chr4_1:80495560-80495579 None:intergenic 30.0%
AAAGGGATGAATGACTTATA+TGG - chr4_1:80495883-80495902 Msa0576410:intron 30.0%
CAAACAATCATCACTTAATG+CGG + chr4_1:80496114-80496133 None:intergenic 30.0%
AAGTGATGATTGTTTGAATG+TGG - chr4_1:80496118-80496137 Msa0576410:intron 30.0%
! ATATGTACATCTGAGATTTG+GGG + chr4_1:80496537-80496556 None:intergenic 30.0%
! CTATATGTACATCTGAGATT+TGG + chr4_1:80496539-80496558 None:intergenic 30.0%
AATCTCAGATGTACATATAG+TGG - chr4_1:80496539-80496558 Msa0576410:intron 30.0%
TAATCCCTTCATAAAGTGAA+AGG + chr4_1:80496739-80496758 None:intergenic 30.0%
!! AAACGCTTTGTTTGTGCTTT+CGG + chr4_1:80489862-80489881 None:intergenic 35.0%
GAAACAGAGAGAAATTGTTG+GGG + chr4_1:80489885-80489904 None:intergenic 35.0%
GGAAACAGAGAGAAATTGTT+GGG + chr4_1:80489886-80489905 None:intergenic 35.0%
TGGAAACAGAGAGAAATTGT+TGG + chr4_1:80489887-80489906 None:intergenic 35.0%
TGAGAGATCGAAAAAGAGAA+TGG - chr4_1:80489938-80489957 Msa0576410:three_prime_UTR 35.0%
ATCTATTAACGAGTGAACAC+TGG + chr4_1:80489975-80489994 None:intergenic 35.0%
GAATGCAATTGCATAATCGA+CGG - chr4_1:80490307-80490326 Msa0576410:intron 35.0%
AAAAGGAAAAGTTGAGATGG+TGG - chr4_1:80490367-80490386 Msa0576410:intron 35.0%
TACTTCATGTGAGAGAAAGA+GGG + chr4_1:80490481-80490500 None:intergenic 35.0%
!!! TCTCTACTAGCTTTTTCTGA+GGG + chr4_1:80490519-80490538 None:intergenic 35.0%
!!! ATCTCTACTAGCTTTTTCTG+AGG + chr4_1:80490520-80490539 None:intergenic 35.0%
TTCAATGGTAAATGAGACCT+TGG - chr4_1:80490967-80490986 Msa0576410:three_prime_UTR 35.0%
TGCAGAAAGAAAAAAAGCCA+AGG + chr4_1:80490987-80491006 None:intergenic 35.0%
ATATACAAGCGCATGTTTGA+TGG + chr4_1:80491467-80491486 None:intergenic 35.0%
!!! TTTTTAGCTTCTCTTACGGT+GGG + chr4_1:80491493-80491512 None:intergenic 35.0%
!!! TTTTTTAGCTTCTCTTACGG+TGG + chr4_1:80491494-80491513 None:intergenic 35.0%
GAAATATTTGCTTTAGCGGT+GGG + chr4_1:80491562-80491581 None:intergenic 35.0%
TGAAATATTTGCTTTAGCGG+TGG + chr4_1:80491563-80491582 None:intergenic 35.0%
!! ATACTATTGATGATGGTGTC+CGG + chr4_1:80491909-80491928 None:intergenic 35.0%
ATAGAGAAAAATTCGAACCC+CGG - chr4_1:80491948-80491967 Msa0576410:intron 35.0%
!! ATACTATTGATGATGGTGTC+CGG + chr4_1:80491909-80491928 None:intergenic 35.0%
TCTTATGAAGGTTTGGCAAT+CGG + chr4_1:80492248-80492267 None:intergenic 35.0%
GTTGAAGAAGATATGGAAAC+TGG - chr4_1:80492518-80492537 Msa0576410:three_prime_UTR 35.0%
TGAAGAAGATATGGAAACTG+GGG - chr4_1:80492520-80492539 Msa0576410:three_prime_UTR 35.0%
! AAAGCAACAATGGTAATGAG+AGG - chr4_1:80492543-80492562 Msa0576410:intron 35.0%
ACTGAACCATGAAGAATCAT+TGG + chr4_1:80492579-80492598 None:intergenic 35.0%
! TTATGCCTTGATTTTTCTGC+TGG - chr4_1:80492640-80492659 Msa0576410:intron 35.0%
ATTAGCCAGCAGAAAAATCA+AGG + chr4_1:80492648-80492667 None:intergenic 35.0%
TCGTAGTGCTTTAACAGAAA+TGG - chr4_1:80492697-80492716 Msa0576410:intron 35.0%
! TGATTTGCCATAATAAGCGT+GGG + chr4_1:80492781-80492800 None:intergenic 35.0%
! ATGATTTGCCATAATAAGCG+TGG + chr4_1:80492782-80492801 None:intergenic 35.0%
! TTGCATCCTTTTAATCCTGT+AGG + chr4_1:80492927-80492946 None:intergenic 35.0%
TACAGGATTAAAAGGATGCA+AGG - chr4_1:80492926-80492945 Msa0576410:intron 35.0%
ACAGGATTAAAAGGATGCAA+GGG - chr4_1:80492927-80492946 Msa0576410:intron 35.0%
GAATGTCTGAACTTGGATTA+AGG + chr4_1:80493178-80493197 None:intergenic 35.0%
!!! ATCCCATTTTTTCTACCTTC+CGG - chr4_1:80493312-80493331 Msa0576410:three_prime_UTR 35.0%
GATTATGCATTTATACCTGG+AGG + chr4_1:80493381-80493400 None:intergenic 35.0%
GGTAAAAGTAAGACTATACC+CGG + chr4_1:80493491-80493510 None:intergenic 35.0%
! TGCTAATTAGTTGGATTAGG+AGG + chr4_1:80493615-80493634 None:intergenic 35.0%
!! CACGTTGGTAAGATTTTCTT+CGG - chr4_1:80493689-80493708 Msa0576410:intron 35.0%
TTCTTCGGTTAGAGAAAAAC+AGG - chr4_1:80493704-80493723 Msa0576410:intron 35.0%
!! AAAAGTACTCTAGAGTGTAG+AGG - chr4_1:80493915-80493934 Msa0576410:intron 35.0%
!! AAAGTACTCTAGAGTGTAGA+GGG - chr4_1:80493916-80493935 Msa0576410:intron 35.0%
AACACTGATCAGACAACAAT+TGG + chr4_1:80493948-80493967 None:intergenic 35.0%
!! TTAGGTTGATACCAGATTAG+TGG + chr4_1:80494012-80494031 None:intergenic 35.0%
CAAAGCTTTACAGGTAGAAT+AGG + chr4_1:80494056-80494075 None:intergenic 35.0%
! TCTACCTGTAAAGCTTTGAT+AGG - chr4_1:80494058-80494077 Msa0576410:CDS 35.0%
TATGCCTATCAAAGCTTTAC+AGG + chr4_1:80494065-80494084 None:intergenic 35.0%
ATCACATGAATATGGCTGTA+TGG + chr4_1:80494173-80494192 None:intergenic 35.0%
AAAATGTTGAGAAGGCAAGA+AGG + chr4_1:80494269-80494288 None:intergenic 35.0%
CACAGATAGAACATACTTTC+GGG + chr4_1:80494346-80494365 None:intergenic 35.0%
CCACAGATAGAACATACTTT+CGG + chr4_1:80494347-80494366 None:intergenic 35.0%
TATCTGCAATAGGTTAATGC+TGG - chr4_1:80494431-80494450 Msa0576410:intron 35.0%
CAAAACTGTTCAGCAAAAGT+TGG + chr4_1:80494529-80494548 None:intergenic 35.0%
TTTGTGAGCTCATAACTATC+AGG + chr4_1:80494761-80494780 None:intergenic 35.0%
! GGAATAAGTAGCAGTTTTCA+TGG + chr4_1:80494850-80494869 None:intergenic 35.0%
!! CAAATGATAATGGCTGTTGT+TGG - chr4_1:80495021-80495040 Msa0576410:intron 35.0%
! GTTATTGCGACATTTTCAAC+AGG - chr4_1:80495074-80495093 Msa0576410:intron 35.0%
ATTCAGAGTTTATGCTAACC+TGG + chr4_1:80495118-80495137 None:intergenic 35.0%
GATGATGTACCATATGGTTA+TGG - chr4_1:80495220-80495239 Msa0576410:intron 35.0%
!!! TTCCATTTTGTTTTTGCCAC+GGG - chr4_1:80495247-80495266 Msa0576410:intron 35.0%
ATATCCTACTCTCCTGTATT+TGG - chr4_1:80495332-80495351 Msa0576410:intron 35.0%
ATATGATATGGGCCAAATAC+AGG + chr4_1:80495347-80495366 None:intergenic 35.0%
TGTATTTGGCCCATATCATA+TGG - chr4_1:80495346-80495365 Msa0576410:intron 35.0%
TTCATTTACTATTCTGACCC+AGG + chr4_1:80495771-80495790 None:intergenic 35.0%
GGGTCAGAATAGTAAATGAA+TGG - chr4_1:80495771-80495790 Msa0576410:intron 35.0%
CAGAATAGTAAATGAATGGC+TGG - chr4_1:80495775-80495794 Msa0576410:intron 35.0%
ACATCAAACTCAAGCAAGTA+AGG + chr4_1:80496015-80496034 None:intergenic 35.0%
TTGATGTTATGCACTTCCAT+AGG - chr4_1:80496028-80496047 Msa0576410:intron 35.0%
TGATGTTATGCACTTCCATA+GGG - chr4_1:80496029-80496048 Msa0576410:intron 35.0%
AAATCATCATCACTACCCTA+TGG + chr4_1:80496047-80496066 None:intergenic 35.0%
! AGGGTAGTGATGATGATTTA+TGG - chr4_1:80496048-80496067 Msa0576410:intron 35.0%
GTAGTGAATGTCAGAATTAG+TGG - chr4_1:80496227-80496246 Msa0576410:intron 35.0%
!!! TTTTTTCCTATCTTCAGAGC+TGG + chr4_1:80496571-80496590 None:intergenic 35.0%
AAGGACTGTATATCTTCATG+CGG + chr4_1:80496720-80496739 None:intergenic 35.0%
ACAGTCCTTTCACTTTATGA+AGG - chr4_1:80496731-80496750 Msa0576410:five_prime_UTR 35.0%
CAGTCCTTTCACTTTATGAA+GGG - chr4_1:80496732-80496751 Msa0576410:five_prime_UTR 35.0%
GAGAAAGACGAAGAAGATGA+AGG + chr4_1:80490018-80490037 None:intergenic 40.0%
TCATCTTCTTCGTCTTTCTC+AGG - chr4_1:80490018-80490037 Msa0576410:three_prime_UTR 40.0%
!! GGTTGGTTACTTTGGAGTAA+AGG - chr4_1:80490388-80490407 Msa0576410:intron 40.0%
CTACTTCATGTGAGAGAAAG+AGG + chr4_1:80490482-80490501 None:intergenic 40.0%
!! TTTTCTGAGGGGAAATTTGC+AGG + chr4_1:80490507-80490526 None:intergenic 40.0%
!!! CTCTACTAGCTTTTTCTGAG+GGG + chr4_1:80490518-80490537 None:intergenic 40.0%
TAAGCAAGCATTCATCGTTG+AGG - chr4_1:80490548-80490567 Msa0576410:intron 40.0%
CTAGCAGCAAATTGTGTTGT+TGG - chr4_1:80490649-80490668 Msa0576410:intron 40.0%
TATGCAAATTTGTCCCCGAT+AGG + chr4_1:80490826-80490845 None:intergenic 40.0%
! GTGGACCCAATGATTTTCAA+TGG - chr4_1:80490952-80490971 Msa0576410:three_prime_UTR 40.0%
!! TACTATTGATGATGGTGTCC+GGG + chr4_1:80491908-80491927 None:intergenic 40.0%
!! TACTATTGATGATGGTGTCC+GGG + chr4_1:80491908-80491927 None:intergenic 40.0%
TTATGAAGGTTTGGCAATCG+GGG + chr4_1:80492246-80492265 None:intergenic 40.0%
CTTATGAAGGTTTGGCAATC+GGG + chr4_1:80492247-80492266 None:intergenic 40.0%
AAGAGTCTGTCATCTGTCAT+GGG + chr4_1:80492391-80492410 None:intergenic 40.0%
AAAGAGTCTGTCATCTGTCA+TGG + chr4_1:80492392-80492411 None:intergenic 40.0%
CTACGCAGTACATGAATGAA+TGG + chr4_1:80492489-80492508 None:intergenic 40.0%
TCCAAGGATTGGATGCATTT+CGG + chr4_1:80492607-80492626 None:intergenic 40.0%
AAATGCATCCAATCCTTGGA+TGG - chr4_1:80492607-80492626 Msa0576410:intron 40.0%
ATATCTTGCCATCCAAGGAT+TGG + chr4_1:80492618-80492637 None:intergenic 40.0%
TAAGCATATCTTGCCATCCA+AGG + chr4_1:80492623-80492642 None:intergenic 40.0%
!! TTTTCTGCTGGCTAATCTGT+TGG - chr4_1:80492652-80492671 Msa0576410:intron 40.0%
AAGGGTGGAAAAGACTGTTT+GGG - chr4_1:80492945-80492964 Msa0576410:intron 40.0%
! GGTTAGTCAAGATTGCTTTG+TGG - chr4_1:80493274-80493293 Msa0576410:three_prime_UTR 40.0%
AGCCGGAAGGTAGAAAAAAT+GGG + chr4_1:80493317-80493336 None:intergenic 40.0%
AAGCCGGAAGGTAGAAAAAA+TGG + chr4_1:80493318-80493337 None:intergenic 40.0%
TTATCTTTCAACAAGCCTCC+AGG - chr4_1:80493363-80493382 Msa0576410:exon 40.0%
! TACAATTCTTTTACCAGGGG+AGG - chr4_1:80493450-80493469 Msa0576410:CDS 40.0%
! TGTTCCTGTCATTCCTTTTC+AGG - chr4_1:80493584-80493603 Msa0576410:intron 40.0%
! GTTCCTGTCATTCCTTTTCA+GGG - chr4_1:80493585-80493604 Msa0576410:intron 40.0%
AAACCCTGAAAAGGAATGAC+AGG + chr4_1:80493591-80493610 None:intergenic 40.0%
TTAGGAGGAAAACCCTGAAA+AGG + chr4_1:80493600-80493619 None:intergenic 40.0%
GCATAATCAGCTTCATCACA+TGG - chr4_1:80493632-80493651 Msa0576410:intron 40.0%
CTGAAAAATATGCAGCACGT+TGG - chr4_1:80493674-80493693 Msa0576410:intron 40.0%
!! AAGTACTCTAGAGTGTAGAG+GGG - chr4_1:80493917-80493936 Msa0576410:intron 40.0%
! CCGAAAGTATGTTCTATCTG+TGG - chr4_1:80494344-80494363 Msa0576410:intron 40.0%
AATGCTGGTATTCTAACTCC+AGG - chr4_1:80494446-80494465 Msa0576410:intron 40.0%
ATGCTGGTATTCTAACTCCA+GGG - chr4_1:80494447-80494466 Msa0576410:intron 40.0%
! ATGCTTAGCCAGTCTGTTTT+GGG + chr4_1:80494684-80494703 None:intergenic 40.0%
TGGATACACGTATGTGACAA+TGG + chr4_1:80494816-80494835 None:intergenic 40.0%
CATAGATTCCAAATGCTTCC+AGG - chr4_1:80495097-80495116 Msa0576410:intron 40.0%
!! TATGCTAACCTGGAAGCATT+TGG + chr4_1:80495108-80495127 None:intergenic 40.0%
! TTGCTATGCTATTGGTTGGA+TGG - chr4_1:80495281-80495300 Msa0576410:intron 40.0%
TTGCATGACAGAATATCAGC+TGG - chr4_1:80495524-80495543 Msa0576410:intron 40.0%
CATTGAATTACTTGGCGTCA+GGG + chr4_1:80495552-80495571 None:intergenic 40.0%
TCATTGAATTACTTGGCGTC+AGG + chr4_1:80495553-80495572 None:intergenic 40.0%
TTCTCACTTGTAGTGTTCGT+TGG - chr4_1:80495640-80495659 Msa0576410:intron 40.0%
AGGGATTTGATGAACGTGAT+TGG - chr4_1:80495918-80495937 Msa0576410:intron 40.0%
ATATCGCCATTGACCATTGT+AGG - chr4_1:80495976-80495995 Msa0576410:intron 40.0%
TTTAACCATCGCTCCTACAA+TGG + chr4_1:80495992-80496011 None:intergenic 40.0%
TGCTGATAGCTCCAATGATA+TGG - chr4_1:80496422-80496441 Msa0576410:intron 40.0%
TGTCTGCACTTCCATATCAT+TGG + chr4_1:80496436-80496455 None:intergenic 40.0%
! ATATGGAAGTGCAGACAAGT+TGG - chr4_1:80496439-80496458 Msa0576410:intron 40.0%
GATTGTTCTTTAGTGTGCAC+TGG - chr4_1:80496633-80496652 Msa0576410:intron 40.0%
CTGGACAGAATCAATGTTTC+TGG - chr4_1:80496652-80496671 Msa0576410:intron 40.0%
TGACACATGTACAGGTAAGA+GGG + chr4_1:80496775-80496794 None:intergenic 40.0%
TTTCTCAGTGACACATGTAC+AGG + chr4_1:80496783-80496802 None:intergenic 40.0%
TTAACGAGTGAACACTGGAG+CGG + chr4_1:80489970-80489989 None:intergenic 45.0%
GAAGAAGATGAAGGCAATGG+TGG + chr4_1:80490009-80490028 None:intergenic 45.0%
GACGAAGAAGATGAAGGCAA+TGG + chr4_1:80490012-80490031 None:intergenic 45.0%
! GGAAAAGTTGAGATGGTGGT+TGG - chr4_1:80490371-80490390 Msa0576410:intron 45.0%
! GAGATGGTGGTTGGTTACTT+TGG - chr4_1:80490380-80490399 Msa0576410:intron 45.0%
CACAATAAACGAGGAATCCG+TGG - chr4_1:80491211-80491230 Msa0576410:intron 45.0%
ATTGATCGGAGTTCGAACCA+CGG + chr4_1:80491231-80491250 None:intergenic 45.0%
ACTAAGCTTCTTCTCCAACG+TGG - chr4_1:80491513-80491532 Msa0576410:three_prime_UTR 45.0%
CTAAGCTTCTTCTCCAACGT+GGG - chr4_1:80491514-80491533 Msa0576410:intron 45.0%
ACTGTCGAGCTTAGCTAAGT+TGG - chr4_1:80491841-80491860 Msa0576410:intron 45.0%
!! ACTATTGATGATGGTGTCCG+GGG + chr4_1:80491907-80491926 None:intergenic 45.0%
!! ACTATTGATGATGGTGTCCG+GGG + chr4_1:80491907-80491926 None:intergenic 45.0%
GAAACTGGGGAAAGCAACAA+TGG - chr4_1:80492533-80492552 Msa0576410:intron 45.0%
TCCGAAATGCATCCAATCCT+TGG - chr4_1:80492603-80492622 Msa0576410:intron 45.0%
TTGCAGTCCCACGCTTATTA+TGG - chr4_1:80492771-80492790 Msa0576410:intron 45.0%
GGATTAAAAGGATGCAAGGG+TGG - chr4_1:80492930-80492949 Msa0576410:intron 45.0%
CAAGGGTGGAAAAGACTGTT+TGG - chr4_1:80492944-80492963 Msa0576410:intron 45.0%
AGGGTGGAAAAGACTGTTTG+GGG - chr4_1:80492946-80492965 Msa0576410:intron 45.0%
AAGAGAAACACATGGCACTC+TGG - chr4_1:80493246-80493265 Msa0576410:three_prime_UTR 45.0%
! AATTCTTTTACCAGGGGAGG+TGG - chr4_1:80493453-80493472 Msa0576410:CDS 45.0%
CACCAAACAGACGACATATG+CGG + chr4_1:80494210-80494229 None:intergenic 45.0%
GCATATGTCGTCTGTTTGGT+GGG - chr4_1:80494209-80494228 Msa0576410:five_prime_UTR 45.0%
! CATATGTCGTCTGTTTGGTG+GGG - chr4_1:80494210-80494229 Msa0576410:five_prime_UTR 45.0%
TATTCTAACTCCAGGGCTGA+TGG - chr4_1:80494454-80494473 Msa0576410:intron 45.0%
ATTCTAACTCCAGGGCTGAT+GGG - chr4_1:80494455-80494474 Msa0576410:intron 45.0%
TTCTAATGGCGCACCAACAA+AGG + chr4_1:80494496-80494515 None:intergenic 45.0%
TTTGTTGGTGCGCCATTAGA+AGG - chr4_1:80494495-80494514 Msa0576410:intron 45.0%
TTGGCAAACCTGCCTTCTAA+TGG + chr4_1:80494510-80494529 None:intergenic 45.0%
TTTGTATGCAGTGAACCTGC+TGG - chr4_1:80494627-80494646 Msa0576410:intron 45.0%
! GATGCTTAGCCAGTCTGTTT+TGG + chr4_1:80494685-80494704 None:intergenic 45.0%
CTTACATATCCCTGCAGTTC+CGG - chr4_1:80495176-80495195 Msa0576410:intron 45.0%
TATGGTACATCATCCTCTGC+TGG + chr4_1:80495214-80495233 None:intergenic 45.0%
GCAGAGGATGATGTACCATA+TGG - chr4_1:80495214-80495233 Msa0576410:intron 45.0%
CTCCCGTGGCAAAAACAAAA+TGG + chr4_1:80495252-80495271 None:intergenic 45.0%
AGCAAAATACATTGCTCCCG+TGG + chr4_1:80495266-80495285 None:intergenic 45.0%
TGCCTTCATTCTTCTGCAGA+TGG - chr4_1:80495720-80495739 Msa0576410:intron 45.0%
GTCCATCTGCAGAAGAATGA+AGG + chr4_1:80495725-80495744 None:intergenic 45.0%
TGCAGATGGACAATCGATGT+GGG - chr4_1:80495734-80495753 Msa0576410:intron 45.0%
ACGCGAGACATATGAGACAT+GGG + chr4_1:80495949-80495968 None:intergenic 45.0%
ATCGCTCCTACAATGGTCAA+TGG + chr4_1:80495985-80496004 None:intergenic 45.0%
ATTGACCATTGTAGGAGCGA+TGG - chr4_1:80495984-80496003 Msa0576410:intron 45.0%
TTTCCTATCTTCAGAGCTGG+AGG + chr4_1:80496568-80496587 None:intergenic 45.0%
! TGCACGCATACTGGTTGAAT+TGG - chr4_1:80496681-80496700 Msa0576410:intron 45.0%
GTGACACATGTACAGGTAAG+AGG + chr4_1:80496776-80496795 None:intergenic 45.0%
!!! TTTATTTTTAATACTAATAT+AGG + chr4_1:80490721-80490740 None:intergenic 5.0%
!! ATATTTATTAAGTAATTTAA+TGG - chr4_1:80491179-80491198 Msa0576410:intron 5.0%
!! AATATAAAATAAGTAAAAAA+TGG + chr4_1:80494591-80494610 None:intergenic 5.0%
TGAAGCTCGAGGGTCATTGA+TGG + chr4_1:80490930-80490949 None:intergenic 50.0%
TCAATGACCCTCGAGCTTCA+AGG - chr4_1:80490930-80490949 Msa0576410:three_prime_UTR 50.0%
TCTGCGACAAAAACCCACGT+TGG + chr4_1:80491530-80491549 None:intergenic 50.0%
! CGAGCTTAGCTAAGTTGGCA+AGG - chr4_1:80491846-80491865 Msa0576410:intron 50.0%
! TGCTGGCTAATCTGTTGGCA+TGG - chr4_1:80492657-80492676 Msa0576410:intron 50.0%
GCTGGCTAATCTGTTGGCAT+GGG - chr4_1:80492658-80492677 Msa0576410:intron 50.0%
ATAAGCGTGGGACTGCAAGA+AGG + chr4_1:80492769-80492788 None:intergenic 50.0%
GGGTGGAAAAGACTGTTTGG+GGG - chr4_1:80492947-80492966 Msa0576410:intron 50.0%
AAAGACTGTTTGGGGGCTGA+AGG - chr4_1:80492954-80492973 Msa0576410:intron 50.0%
GAAACACATGGCACTCTGGA+TGG - chr4_1:80493250-80493269 Msa0576410:three_prime_UTR 50.0%
GACCGCATATGTCGTCTGTT+TGG - chr4_1:80494205-80494224 Msa0576410:five_prime_UTR 50.0%
CGCATATGTCGTCTGTTTGG+TGG - chr4_1:80494208-80494227 Msa0576410:five_prime_UTR 50.0%
TTGAGAAGGCAAGAAGGCTC+TGG + chr4_1:80494263-80494282 None:intergenic 50.0%
TTCTAACTCCAGGGCTGATG+GGG - chr4_1:80494456-80494475 Msa0576410:intron 50.0%
ATATAAAGCCCCATCAGCCC+TGG + chr4_1:80494467-80494486 None:intergenic 50.0%
! CTGATGCAGTTTTCTCCAGC+AGG + chr4_1:80494645-80494664 None:intergenic 50.0%
CTGCTGGAGAAAACTGCATC+AGG - chr4_1:80494643-80494662 Msa0576410:intron 50.0%
ACTCTGCACCCAAAACAGAC+TGG - chr4_1:80494673-80494692 Msa0576410:intron 50.0%
ATCATCCTTCCGGAACTGCA+GGG + chr4_1:80495188-80495207 None:intergenic 50.0%
TATCATCCTTCCGGAACTGC+AGG + chr4_1:80495189-80495208 None:intergenic 50.0%
CTGCTGGTGTATCATCCTTC+CGG + chr4_1:80495198-80495217 None:intergenic 50.0%
GAAGGATGATACACCAGCAG+AGG - chr4_1:80495198-80495217 Msa0576410:intron 50.0%
TGGGCCAAATACAGGAGAGT+AGG + chr4_1:80495339-80495358 None:intergenic 50.0%
TTTGTGGCACTGCTGAGTGA+TGG + chr4_1:80495589-80495608 None:intergenic 50.0%
CTGCAGATGGACAATCGATG+TGG - chr4_1:80495733-80495752 Msa0576410:intron 50.0%
GCAGATGGACAATCGATGTG+GGG - chr4_1:80495735-80495754 Msa0576410:intron 50.0%
TACTATTCTGACCCAGGTGC+TGG + chr4_1:80495765-80495784 None:intergenic 50.0%
CACGCGAGACATATGAGACA+TGG + chr4_1:80495950-80495969 None:intergenic 50.0%
!! ACTCCTCCAGCTCTGAAGAT+AGG - chr4_1:80496562-80496581 Msa0576410:intron 50.0%
TGGCACAAATGCACGCATAC+TGG - chr4_1:80496672-80496691 Msa0576410:intron 50.0%
ATGACCCTCGAGCTTCAAGG+TGG - chr4_1:80490933-80490952 Msa0576410:three_prime_UTR 55.0%
! AGGCGTTTTGCGTGTGAGCT+TGG - chr4_1:80492974-80492993 Msa0576410:intron 55.0%
! GGCGTTTTGCGTGTGAGCTT+GGG - chr4_1:80492975-80492994 Msa0576410:intron 55.0%
ACACATGGCACTCTGGATGG+TGG - chr4_1:80493253-80493272 Msa0576410:three_prime_UTR 55.0%
GAGACACGCTGGTCATGAGT+TGG + chr4_1:80494319-80494338 None:intergenic 55.0%
TTGGTGCGCCATTAGAAGGC+AGG - chr4_1:80494499-80494518 Msa0576410:intron 55.0%
CATATCCCTGCAGTTCCGGA+AGG - chr4_1:80495180-80495199 Msa0576410:intron 55.0%
GATGGACAATCGATGTGGGG+TGG - chr4_1:80495738-80495757 Msa0576410:intron 55.0%
GGGTCCACCTTGAAGCTCGA+GGG + chr4_1:80490940-80490959 None:intergenic 60.0%
TGGGTCCACCTTGAAGCTCG+AGG + chr4_1:80490941-80490960 None:intergenic 60.0%
AAGGTACGGGGTTCGAACCC+CGG - chr4_1:80491887-80491906 Msa0576410:intron 60.0%
! GCATGGGCTGCTCGTGACTA+TGG - chr4_1:80492674-80492693 Msa0576410:intron 60.0%
!! GAGGTGGCGCATTTTGGTGC+CGG - chr4_1:80493469-80493488 Msa0576410:CDS 60.0%
!!! AGGTGGCGCATTTTGGTGCC+GGG - chr4_1:80493470-80493489 Msa0576410:CDS 60.0%
! TTTCGGGTGCAGAGACACGC+TGG + chr4_1:80494330-80494349 None:intergenic 60.0%
CGAGTGAACACTGGAGCGGC+TGG + chr4_1:80489966-80489985 None:intergenic 65.0%
CCAAAATGCGCCACCTCCCC+TGG + chr4_1:80493466-80493485 None:intergenic 65.0%
! CCAGGGGAGGTGGCGCATTT+TGG - chr4_1:80493463-80493482 Msa0576410:CDS 65.0%
ATGTGGGGTGGACCAGCACC+TGG - chr4_1:80495750-80495769 Msa0576410:intron 65.0%
TGTGGGGTGGACCAGCACCT+GGG - chr4_1:80495751-80495770 Msa0576410:intron 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 80489827 80496898 80489827 ID=Msa0576410;Name=Msa0576410
chr4_1 mRNA 80489827 80496898 80489827 ID=Msa0576410-mRNA-1;Parent=Msa0576410;Name=Msa0576410-mRNA-1;_AED=0.10;_eAED=0.10;_QI=345|1|1|1|0.27|0.25|12|1301|144
chr4_1 exon 80489827 80490309 80489827 ID=Msa0576410-mRNA-1:exon:28863;Parent=Msa0576410-mRNA-1
chr4_1 exon 80490913 80490986 80490913 ID=Msa0576410-mRNA-1:exon:28862;Parent=Msa0576410-mRNA-1
chr4_1 exon 80491399 80491532 80491399 ID=Msa0576410-mRNA-1:exon:28861;Parent=Msa0576410-mRNA-1
chr4_1 exon 80491607 80491678 80491607 ID=Msa0576410-mRNA-1:exon:28860;Parent=Msa0576410-mRNA-1
chr4_1 exon 80492018 80492087 80492018 ID=Msa0576410-mRNA-1:exon:28859;Parent=Msa0576410-mRNA-1
chr4_1 exon 80492209 80492282 80492209 ID=Msa0576410-mRNA-1:exon:28858;Parent=Msa0576410-mRNA-1
chr4_1 exon 80492376 80492547 80492376 ID=Msa0576410-mRNA-1:exon:28857;Parent=Msa0576410-mRNA-1
chr4_1 exon 80493030 80493119 80493030 ID=Msa0576410-mRNA-1:exon:28856;Parent=Msa0576410-mRNA-1
chr4_1 exon 80493234 80493533 80493234 ID=Msa0576410-mRNA-1:exon:28855;Parent=Msa0576410-mRNA-1
chr4_1 exon 80493721 80493794 80493721 ID=Msa0576410-mRNA-1:exon:28854;Parent=Msa0576410-mRNA-1
chr4_1 exon 80494003 80494327 80494003 ID=Msa0576410-mRNA-1:exon:28853;Parent=Msa0576410-mRNA-1
chr4_1 exon 80496686 80496898 80496686 ID=Msa0576410-mRNA-1:exon:28852;Parent=Msa0576410-mRNA-1
chr4_1 five_prime_UTR 80496686 80496898 80496686 ID=Msa0576410-mRNA-1:five_prime_utr;Parent=Msa0576410-mRNA-1
chr4_1 five_prime_UTR 80494196 80494327 80494196 ID=Msa0576410-mRNA-1:five_prime_utr;Parent=Msa0576410-mRNA-1
chr4_1 CDS 80494003 80494195 80494003 ID=Msa0576410-mRNA-1:cds;Parent=Msa0576410-mRNA-1
chr4_1 CDS 80493721 80493794 80493721 ID=Msa0576410-mRNA-1:cds;Parent=Msa0576410-mRNA-1
chr4_1 CDS 80493366 80493533 80493366 ID=Msa0576410-mRNA-1:cds;Parent=Msa0576410-mRNA-1
chr4_1 three_prime_UTR 80493234 80493365 80493234 ID=Msa0576410-mRNA-1:three_prime_utr;Parent=Msa0576410-mRNA-1
chr4_1 three_prime_UTR 80493030 80493119 80493030 ID=Msa0576410-mRNA-1:three_prime_utr;Parent=Msa0576410-mRNA-1
chr4_1 three_prime_UTR 80492376 80492547 80492376 ID=Msa0576410-mRNA-1:three_prime_utr;Parent=Msa0576410-mRNA-1
chr4_1 three_prime_UTR 80492209 80492282 80492209 ID=Msa0576410-mRNA-1:three_prime_utr;Parent=Msa0576410-mRNA-1
chr4_1 three_prime_UTR 80492018 80492087 80492018 ID=Msa0576410-mRNA-1:three_prime_utr;Parent=Msa0576410-mRNA-1
chr4_1 three_prime_UTR 80491607 80491678 80491607 ID=Msa0576410-mRNA-1:three_prime_utr;Parent=Msa0576410-mRNA-1
chr4_1 three_prime_UTR 80491399 80491532 80491399 ID=Msa0576410-mRNA-1:three_prime_utr;Parent=Msa0576410-mRNA-1
chr4_1 three_prime_UTR 80490913 80490986 80490913 ID=Msa0576410-mRNA-1:three_prime_utr;Parent=Msa0576410-mRNA-1
chr4_1 three_prime_UTR 80489827 80490309 80489827 ID=Msa0576410-mRNA-1:three_prime_utr;Parent=Msa0576410-mRNA-1
Gene Sequence

>Msa0576410

ATGGAAACTGGGGAAAGCAACAATGGTAATGAGAGGTGTATCATATCCAATGATTCTTCATGGTTCAGTCAATTCCGAAATGCATCCAATCCTTGGATGGCAAGATATGCTTATGCCTTGATTTTTCTGCTGGCTAATCTGTTGGCATGGGCTGCTCGTGACTATGGTCGTAGTGCTTTAACAGAAATGGAGAGATTAAAAGGATGCAAGGGTGGAAAAGACTGTTTGGGGGCTGAAGGCGTTTTGCGTGTGAGCTTGGGTTGCTTTACATTCTATATCATAATGTTTTTGTCAACTACTGGCACTTCTAAACTAAAGCAAAAGAGAAACACATGGCACTCTGGATGGTGGTTAGTCAAGATTGCTTTGTGGATCGTCATGACTGTCATCCCATTTTTTCTACCTTCCGGCTTTATTCAAATTTATGGTCAGTAA
Protein sequence

>Msa0576410

METGESNNGNERCIISNDSSWFSQFRNASNPWMARYAYALIFLLANLLAWAARDYGRSALTEMERLKGCKGGKDCLGAEGVLRVSLGCFTFYIIMFLSTTGTSKLKQKRNTWHSGWWLVKIALWIVMTVIPFFLPSGFIQIYGQ*