Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1362620 | AET05293.2 | 96.992 | 399 | 3 | 1 | 1 | 399 | 1 | 390 | 0.0 | 788 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1362620 | sp|Q54UF8|SERIC_DICDI | 27.714 | 350 | 211 | 11 | 35 | 356 | 23 | 358 | 8.42e-30 | 122 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1362620 | G7L8Z3 | 96.992 | 399 | 3 | 1 | 1 | 399 | 1 | 390 | 0.0 | 788 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0025160 | Msa1362620 | 0.806710 | 7.205904e-50 | -8.615850e-47 |
| Msa0025580 | Msa1362620 | 0.810179 | 1.311213e-50 | -8.615850e-47 |
| Msa0034210 | Msa1362620 | 0.801619 | 8.266727e-49 | -8.615850e-47 |
| Msa0050660 | Msa1362620 | 0.835193 | 1.934575e-56 | -8.615850e-47 |
| Msa0050700 | Msa1362620 | 0.836409 | 9.518035e-57 | -8.615850e-47 |
| Msa0050790 | Msa1362620 | 0.832936 | 7.111005e-56 | -8.615850e-47 |
| Msa0072520 | Msa1362620 | 0.803997 | 2.668488e-49 | -8.615850e-47 |
| Msa1362620 | Msa1417370 | 0.809886 | 1.515917e-50 | -8.615850e-47 |
| Msa1362620 | Msa1440630 | 0.833954 | 3.962460e-56 | -8.615850e-47 |
| Msa1362620 | Msa1452140 | 0.801076 | 1.067889e-48 | -8.615850e-47 |
| Msa0616210 | Msa1362620 | 0.807460 | 5.001628e-50 | -8.615850e-47 |
| Msa0675330 | Msa1362620 | 0.811535 | 6.670596e-51 | -8.615850e-47 |
| Msa0699540 | Msa1362620 | 0.807661 | 4.533457e-50 | -8.615850e-47 |
| Msa0121330 | Msa1362620 | 0.811888 | 5.588591e-51 | -8.615850e-47 |
| Msa0146650 | Msa1362620 | 0.801535 | 8.601921e-49 | -8.615850e-47 |
| Msa0161930 | Msa1362620 | 0.809509 | 1.827354e-50 | -8.615850e-47 |
| Msa1300460 | Msa1362620 | 0.803842 | 2.874147e-49 | -8.615850e-47 |
| Msa1315160 | Msa1362620 | 0.814111 | 1.819654e-51 | -8.615850e-47 |
| Msa0989500 | Msa1362620 | 0.843619 | 1.253870e-58 | -8.615850e-47 |
| Msa1042160 | Msa1362620 | 0.802890 | 4.526624e-49 | -8.615850e-47 |
| Msa1042190 | Msa1362620 | 0.808146 | 3.574073e-50 | -8.615850e-47 |
| Msa0284800 | Msa1362620 | 0.815486 | 9.020115e-52 | -8.615850e-47 |
| Msa1123970 | Msa1362620 | 0.810777 | 9.737555e-51 | -8.615850e-47 |
| Msa1167470 | Msa1362620 | 0.802466 | 5.536269e-49 | -8.615850e-47 |
| Msa1169650 | Msa1362620 | 0.805746 | 1.150232e-49 | -8.615850e-47 |
| Msa0541300 | Msa1362620 | 0.810913 | 9.097735e-51 | -8.615850e-47 |
| Msa0541310 | Msa1362620 | 0.808330 | 3.266434e-50 | -8.615850e-47 |
| Msa0573810 | Msa1362620 | 0.807715 | 4.414543e-50 | -8.615850e-47 |
| Msa0576410 | Msa1362620 | 0.808314 | 3.291122e-50 | -8.615850e-47 |
| Msa0585020 | Msa1362620 | 0.803190 | 3.923719e-49 | -8.615850e-47 |
| Msa0597270 | Msa1362620 | 0.805330 | 1.406024e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1362620 | MtrunA17_Chr8g0390691 | 97.423 | 388 | 1 | 1 | 1 | 388 | 1 | 379 | 0.0 | 771 |
| Msa1362620 | MtrunA17_Chr6g0485111 | 73.028 | 393 | 92 | 4 | 1 | 388 | 1 | 384 | 0.0 | 581 |
| Msa1362620 | MtrunA17_Chr1g0169271 | 51.261 | 357 | 162 | 4 | 34 | 388 | 51 | 397 | 1.73e-126 | 371 |
| Msa1362620 | MtrunA17_Chr2g0287641 | 29.630 | 378 | 231 | 7 | 34 | 388 | 28 | 393 | 3.63e-52 | 179 |
| Msa1362620 | MtrunA17_Chr7g0237091 | 31.135 | 379 | 223 | 10 | 34 | 388 | 31 | 395 | 1.77e-44 | 159 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1362620 | AT3G24460.2 | 69.424 | 399 | 101 | 4 | 1 | 388 | 1 | 389 | 0.0 | 581 |
| Msa1362620 | AT3G24460.1 | 69.424 | 399 | 101 | 4 | 1 | 388 | 1 | 389 | 0.0 | 581 |
| Msa1362620 | AT4G13345.4 | 71.939 | 392 | 96 | 3 | 1 | 390 | 1 | 380 | 0.0 | 568 |
| Msa1362620 | AT4G13345.2 | 72.051 | 390 | 95 | 3 | 1 | 388 | 1 | 378 | 0.0 | 566 |
| Msa1362620 | AT4G13345.6 | 72.051 | 390 | 95 | 3 | 1 | 388 | 1 | 378 | 0.0 | 566 |
| Msa1362620 | AT4G13345.1 | 72.051 | 390 | 95 | 3 | 1 | 388 | 1 | 378 | 0.0 | 565 |
| Msa1362620 | AT4G13345.5 | 70.492 | 366 | 94 | 3 | 1 | 364 | 1 | 354 | 0.0 | 520 |
| Msa1362620 | AT4G13345.3 | 65.273 | 311 | 94 | 3 | 1 | 309 | 1 | 299 | 3.53e-138 | 397 |
| Msa1362620 | AT4G13345.7 | 65.273 | 311 | 94 | 3 | 1 | 309 | 1 | 299 | 3.53e-138 | 397 |
| Msa1362620 | AT2G33205.1 | 48.947 | 380 | 180 | 5 | 15 | 392 | 32 | 399 | 9.66e-123 | 362 |
| Msa1362620 | AT2G33205.9 | 48.947 | 380 | 178 | 6 | 15 | 390 | 32 | 399 | 1.78e-121 | 358 |
| Msa1362620 | AT2G33205.8 | 48.691 | 382 | 180 | 6 | 15 | 392 | 32 | 401 | 7.14e-121 | 357 |
| Msa1362620 | AT2G33205.5 | 48.691 | 382 | 180 | 6 | 15 | 392 | 32 | 401 | 7.14e-121 | 357 |
| Msa1362620 | AT2G33205.6 | 47.175 | 354 | 171 | 6 | 15 | 364 | 32 | 373 | 6.23e-105 | 315 |
| Msa1362620 | AT2G33205.2 | 49.359 | 312 | 145 | 4 | 84 | 392 | 5 | 306 | 2.43e-101 | 304 |
| Msa1362620 | AT2G33205.7 | 49.834 | 301 | 138 | 4 | 95 | 392 | 1 | 291 | 9.21e-99 | 297 |
| Msa1362620 | AT2G33205.3 | 44.951 | 307 | 155 | 5 | 15 | 319 | 32 | 326 | 1.47e-80 | 251 |
| Msa1362620 | AT2G33205.4 | 44.951 | 307 | 155 | 5 | 15 | 319 | 32 | 326 | 1.47e-80 | 251 |
| Msa1362620 | AT3G06170.1 | 28.954 | 373 | 239 | 9 | 34 | 388 | 29 | 393 | 2.95e-44 | 159 |
| Msa1362620 | AT1G16180.2 | 30.343 | 379 | 216 | 10 | 34 | 382 | 31 | 391 | 3.40e-40 | 148 |
| Msa1362620 | AT1G16180.1 | 30.343 | 379 | 216 | 10 | 34 | 382 | 31 | 391 | 3.40e-40 | 148 |
Find 97 sgRNAs with CRISPR-Local
Find 332 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCGGCTTTATTCAAATTTA+TGG | 0.115224 | tig0017892:+77131 | Msa1362620:CDS |
| CCAGGGGAGGTGGCGCATTT+TGG | 0.174364 | tig0017892:+77264 | Msa1362620:intron |
| AAACGCTTTGTTTGTGCTTT+CGG | 0.261674 | tig0017892:-73885 | None:intergenic |
| GATGCTTAGCCAGTCTGTTT+TGG | 0.263287 | tig0017892:-78482 | None:intergenic |
| ATTCAACCTACAGGATTAAA+AGG | 0.275412 | tig0017892:+76712 | Msa1362620:intron |
| TTTATATTGTCTTCCTTTGT+TGG | 0.276198 | tig0017892:+78280 | Msa1362620:CDS |
| ATTCTAACTCCGGGGCTGAT+GGG | 0.336113 | tig0017892:+78255 | Msa1362620:CDS |
| CAATGGTGGAAAAGACTGTT+TGG | 0.350902 | tig0017892:+76738 | Msa1362620:CDS |
| TCCAAGGATTGGATGCATTT+CGG | 0.359677 | tig0017892:-76393 | None:intergenic |
| CAAACAACATCACATGAATA+TGG | 0.364727 | tig0017892:-77978 | None:intergenic |
| TTTCTGTGTTGAAGAAGATA+TGG | 0.365734 | tig0017892:+76300 | Msa1362620:exon |
| ATGTGGGGTGGACCAGCACC+TGG | 0.368671 | tig0017892:+79546 | Msa1362620:CDS |
| GACCGCATATGTCGTCTGTT+TGG | 0.370819 | tig0017892:+78005 | Msa1362620:CDS |
| TCATATCCAATGATTCTTCA+TGG | 0.371838 | tig0017892:+76359 | Msa1362620:CDS |
| CATAGATTCCAAATGCTTCC+AGG | 0.376091 | tig0017892:+78895 | Msa1362620:CDS |
| TATTCTAACTCCGGGGCTGA+TGG | 0.381680 | tig0017892:+78254 | Msa1362620:CDS |
| TTATGCTAATTAGTTGGATT+AGG | 0.382452 | tig0017892:-77416 | None:intergenic |
| GTTGAAGAAGATATGGAAAC+TGG | 0.390734 | tig0017892:+76307 | Msa1362620:exon |
| TATGCTAACCTGGAAGCATT+TGG | 0.394190 | tig0017892:-78903 | None:intergenic |
| GATGATGTACCATATGGTTA+TGG | 0.398590 | tig0017892:+79018 | Msa1362620:CDS |
| AGCTGATTATGCTAATTAGT+TGG | 0.402425 | tig0017892:-77422 | None:intergenic |
| TGCTGGCTAATCTGTTGGCA+TGG | 0.404877 | tig0017892:+76446 | Msa1362620:CDS |
| GGAAACAGAGAGAAATTGTT+GGG | 0.407075 | tig0017892:-73909 | None:intergenic |
| GCATGGGCTGCTCGTGACTA+TGG | 0.408101 | tig0017892:+76463 | Msa1362620:CDS |
| CTGCTGGTGTATCATCCTTC+CGG | 0.415225 | tig0017892:-78993 | None:intergenic |
| TCGTAGTGCTTTAACAGAAA+TGG | 0.420048 | tig0017892:+76486 | Msa1362620:CDS |
| TCATCTTCTTCGTCTTTCTC+AGG | 0.423423 | tig0017892:+74045 | Msa1362620:five_prime_UTR |
| TACTATTCTGACCCAGGTGC+TGG | 0.425466 | tig0017892:-79558 | None:intergenic |
| AATGGTGGAAAAGACTGTTT+GGG | 0.428647 | tig0017892:+76739 | Msa1362620:CDS |
| TTGGCAAACCTGCCTTCTAA+TGG | 0.434037 | tig0017892:-78307 | None:intergenic |
| TCCGAAATGCATCCAATCCT+TGG | 0.436210 | tig0017892:+76392 | Msa1362620:CDS |
| ACTGAACCATGAAGAATCAT+TGG | 0.442403 | tig0017892:-76365 | None:intergenic |
| CTGCTGGAGAAAACTGCATC+AGG | 0.444077 | tig0017892:+78443 | Msa1362620:CDS |
| TTTGTTGGTGCGCCATTAGA+AGG | 0.456775 | tig0017892:+78295 | Msa1362620:CDS |
| TTCTAACTCCGGGGCTGATG+GGG | 0.463726 | tig0017892:+78256 | Msa1362620:CDS |
| TGCTAATTAGTTGGATTAGG+AGG | 0.469122 | tig0017892:-77413 | None:intergenic |
| GCATATGTCGTCTGTTTGGT+GGG | 0.483780 | tig0017892:+78009 | Msa1362620:CDS |
| ACCATAAATTTGAATAAAGC+CGG | 0.484335 | tig0017892:-77132 | None:intergenic |
| CGCATATGTCGTCTGTTTGG+TGG | 0.485949 | tig0017892:+78008 | Msa1362620:CDS |
| TTGGTGCGCCATTAGAAGGC+AGG | 0.495067 | tig0017892:+78299 | Msa1362620:CDS |
| TATCTGCAATAGGTTAATGC+TGG | 0.506107 | tig0017892:+78231 | Msa1362620:intron |
| TTTGTCTGCAGTGAACCTGC+TGG | 0.507601 | tig0017892:+78427 | Msa1362620:CDS |
| GCTGGCTAATCTGTTGGCAT+GGG | 0.507922 | tig0017892:+76447 | Msa1362620:CDS |
| CAGAATAGTAAATGAATGGC+TGG | 0.508449 | tig0017892:+79571 | Msa1362620:CDS |
| TTGCTATGCTATTGGTTGGA+TGG | 0.512496 | tig0017892:+79079 | Msa1362620:CDS |
| CGAGTGAACACTGGAGCGGC+TGG | 0.514328 | tig0017892:-73990 | None:intergenic |
| TTGAGAAGGCAAGAAGGCTC+TGG | 0.515041 | tig0017892:-78060 | None:intergenic |
| TTCTAATGGCGCACCAACAA+AGG | 0.520794 | tig0017892:-78293 | None:intergenic |
| AATGCTGGTATTCTAACTCC+GGG | 0.521184 | tig0017892:+78246 | Msa1362620:CDS |
| TGGAAACAGAGAGAAATTGT+TGG | 0.521277 | tig0017892:-73910 | None:intergenic |
| GCAGAGGATGATGTACCATA+TGG | 0.526809 | tig0017892:+79012 | Msa1362620:CDS |
| GGTTAGTCAAGATTGCTTTG+TGG | 0.532718 | tig0017892:+77075 | Msa1362620:CDS |
| TAATGCTGGTATTCTAACTC+CGG | 0.534438 | tig0017892:+78245 | Msa1362620:CDS |
| AAGAGAAACACATGGCACTC+TGG | 0.544859 | tig0017892:+77047 | Msa1362620:CDS |
| GGGTCAGAATAGTAAATGAA+TGG | 0.544936 | tig0017892:+79567 | Msa1362620:CDS |
| CTACGCAGTACATGAATGAA+TGG | 0.545736 | tig0017892:-76275 | None:intergenic |
| ATATCTTGCCATCCAAGGAT+TGG | 0.547635 | tig0017892:-76404 | None:intergenic |
| TTCATTTACTATTCTGACCC+AGG | 0.547987 | tig0017892:-79564 | None:intergenic |
| GAGACACGCTGGTCATGAGT+TGG | 0.556515 | tig0017892:-78116 | None:intergenic |
| TATGGTACATCATCCTCTGC+TGG | 0.564240 | tig0017892:-79009 | None:intergenic |
| ATCTATTAACGAGTGAACAC+TGG | 0.570516 | tig0017892:-73999 | None:intergenic |
| GAGAAAGACGAAGAAGATGA+AGG | 0.572170 | tig0017892:-74042 | None:intergenic |
| TAAGCATATCTTGCCATCCA+AGG | 0.572921 | tig0017892:-76409 | None:intergenic |
| TAATGAAGAAAATGTTGAGA+AGG | 0.573025 | tig0017892:-78074 | None:intergenic |
| GAAGAAGATGAAGGCAATGG+TGG | 0.578051 | tig0017892:-74033 | None:intergenic |
| ATATAAAGCCCCATCAGCCC+CGG | 0.578865 | tig0017892:-78264 | None:intergenic |
| AAATGCATCCAATCCTTGGA+TGG | 0.580170 | tig0017892:+76396 | Msa1362620:CDS |
| AGCAAAATACATTGCTCCTG+TGG | 0.586918 | tig0017892:-79061 | None:intergenic |
| ACTCTGCACCCAAAACAGAC+TGG | 0.587891 | tig0017892:+78473 | Msa1362620:CDS |
| GAAACACATGGCACTCTGGA+TGG | 0.590908 | tig0017892:+77051 | Msa1362620:CDS |
| TGCAGATGGACAATTGATGT+GGG | 0.592361 | tig0017892:+79530 | Msa1362620:intron |
| CTGCAGATGGACAATTGATG+TGG | 0.599876 | tig0017892:+79529 | Msa1362620:intron |
| TGTGGGGTGGACCAGCACCT+GGG | 0.602163 | tig0017892:+79547 | Msa1362620:CDS |
| GGATTAAAAGGATGCAATGG+TGG | 0.606728 | tig0017892:+76724 | Msa1362620:intron |
| TTGAAGAAGATATGGAAACT+GGG | 0.607550 | tig0017892:+76308 | Msa1362620:exon |
| AAAATGTTGAGAAGGCAAGA+AGG | 0.607677 | tig0017892:-78066 | None:intergenic |
| GCATAATCAGCTTCATCACA+TGG | 0.608507 | tig0017892:+77433 | Msa1362620:CDS |
| CATATGTCGTCTGTTTGGTG+GGG | 0.610341 | tig0017892:+78010 | Msa1362620:CDS |
| CATATCCCTGCAGTTCCGGA+AGG | 0.616238 | tig0017892:+78978 | Msa1362620:intron |
| GAAACTGGGGAAAGCAACAA+TGG | 0.619670 | tig0017892:+76322 | Msa1362620:CDS |
| TAAATTTGAATAAAGCCGGA+AGG | 0.631409 | tig0017892:-77128 | None:intergenic |
| ACAGGATTAAAAGGATGCAA+TGG | 0.633035 | tig0017892:+76721 | Msa1362620:intron |
| GACGAAGAAGATGAAGGCAA+TGG | 0.635154 | tig0017892:-74036 | None:intergenic |
| TTTCGGGTGCAGAGACACGC+TGG | 0.640882 | tig0017892:-78127 | None:intergenic |
| GATGGACAATTGATGTGGGG+TGG | 0.645928 | tig0017892:+79534 | Msa1362620:intron |
| TGAAGAAGATATGGAAACTG+GGG | 0.648363 | tig0017892:+76309 | Msa1362620:exon |
| GAAGGATGATACACCAGCAG+AGG | 0.655362 | tig0017892:+78996 | Msa1362620:CDS |
| ACACATGGCACTCTGGATGG+TGG | 0.661486 | tig0017892:+77054 | Msa1362620:CDS |
| GAAACAGAGAGAAATTGTTG+GGG | 0.664760 | tig0017892:-73908 | None:intergenic |
| AAAGCAACAATGGTAATGAG+AGG | 0.674245 | tig0017892:+76332 | Msa1362620:CDS |
| TTAACGAGTGAACACTGGAG+CGG | 0.677562 | tig0017892:-73994 | None:intergenic |
| CACCAAACAGACGACATATG+CGG | 0.707786 | tig0017892:-78007 | None:intergenic |
| GCAGATGGACAATTGATGTG+GGG | 0.727203 | tig0017892:+79531 | Msa1362620:intron |
| TGGTGGAAAAGACTGTTTGG+GGG | 0.727512 | tig0017892:+76741 | Msa1362620:CDS |
| ATGGTGGAAAAGACTGTTTG+GGG | 0.733016 | tig0017892:+76740 | Msa1362620:CDS |
| ATGCTGGTATTCTAACTCCG+GGG | 0.733087 | tig0017892:+78247 | Msa1362620:CDS |
| TAAAGCAAAAGAGAAACACA+TGG | 0.747169 | tig0017892:+77039 | Msa1362620:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATAAAATAATTAAAAAA+TGG | - | tig0017892:78391-78410 | None:intergenic | 0.0% |
| !! | TTCAAATAATATATATTGAT+CGG | - | tig0017892:75269-75288 | None:intergenic | 10.0% |
| !!! | AATTTATTTAGGATAATATA+AGG | + | tig0017892:77904-77923 | Msa1362620:intron | 10.0% |
| !! | AATCGATAATTAAAAAATAA+TGG | - | tig0017892:79633-79652 | None:intergenic | 10.0% |
| !!! | TATGTTTTTTTCACATTTTT+TGG | + | tig0017892:74229-74248 | Msa1362620:intron | 15.0% |
| !!! | TTATTCTTTTCTAATTTTCT+CGG | - | tig0017892:74375-74394 | None:intergenic | 15.0% |
| !! | GAAAATTAGAAAAGAATAAA+AGG | + | tig0017892:74376-74395 | Msa1362620:intron | 15.0% |
| !!! | CTCTTTTTTCAAATAATATA+CGG | - | tig0017892:75301-75320 | None:intergenic | 15.0% |
| !!! | CTTATAATCTTATTTATTTG+TGG | + | tig0017892:75774-75793 | Msa1362620:intron | 15.0% |
| !!! | TTAGATTTAATTTAAACCAA+TGG | - | tig0017892:76686-76705 | None:intergenic | 15.0% |
| !! | TTTATATAATATAAGCACAA+TGG | - | tig0017892:77653-77672 | None:intergenic | 15.0% |
| !! | TGTGCTTATATTATATAAAA+AGG | + | tig0017892:77654-77673 | Msa1362620:intron | 15.0% |
| !!! | AAAATGTTTTAAACAAGTAA+AGG | - | tig0017892:78175-78194 | None:intergenic | 15.0% |
| !! | AAAAGTAATAAGATAGATAA+AGG | - | tig0017892:78712-78731 | None:intergenic | 15.0% |
| !!! | TTTATCTATCTTATTACTTT+TGG | + | tig0017892:78711-78730 | Msa1362620:intron | 15.0% |
| !!! | TTAGCTTGAATTTTATTATT+AGG | + | tig0017892:78936-78955 | Msa1362620:intron | 15.0% |
| !!! | TTTCAATAAAAATGTTTTTG+TGG | - | tig0017892:79401-79420 | None:intergenic | 15.0% |
| !! | AGAGTATAAAAGATGAAAAA+TGG | - | tig0017892:73933-73952 | None:intergenic | 20.0% |
| !! | AAAATTAAAAGAGGAATGAA+AGG | - | tig0017892:74149-74168 | None:intergenic | 20.0% |
| !! | AAGTTTAAATATAGAAAGGA+GGG | - | tig0017892:74721-74740 | None:intergenic | 20.0% |
| !! | TAAGTTTAAATATAGAAAGG+AGG | - | tig0017892:74722-74741 | None:intergenic | 20.0% |
| !! | GAGTAAGTTTAAATATAGAA+AGG | - | tig0017892:74725-74744 | None:intergenic | 20.0% |
| !! | ATACACAAAATATTATTGAG+AGG | - | tig0017892:74819-74838 | None:intergenic | 20.0% |
| !! | AATTAATTGCAAAAGTAACT+CGG | + | tig0017892:74916-74935 | Msa1362620:intron | 20.0% |
| !! | ATTTACCATTGAAAATCATT+GGG | - | tig0017892:74984-75003 | None:intergenic | 20.0% |
| !!! | ATTGAATTTTACAAGCAAAA+AGG | - | tig0017892:75039-75058 | None:intergenic | 20.0% |
| !!! | ACTCTTATTTTTATCTTCTA+TGG | + | tig0017892:75099-75118 | Msa1362620:intron | 20.0% |
| !! | TTATGAAATATTTGCTTTAG+CGG | - | tig0017892:75578-75597 | None:intergenic | 20.0% |
| !!! | ATTTTTGTCAATCATATTGA+TGG | - | tig0017892:75665-75684 | None:intergenic | 20.0% |
| !! | ACTGAAAAACAATCAAAAAA+TGG | + | tig0017892:75999-76018 | Msa1362620:intron | 20.0% |
| !! | TAATAATAAATTCAACCTAC+AGG | + | tig0017892:76703-76722 | Msa1362620:intron | 20.0% |
| !! | TTTCATGTATATAACTGAAA+AGG | - | tig0017892:76806-76825 | None:intergenic | 20.0% |
| !! | TAGTTACTCATATTCATTTA+TGG | + | tig0017892:76890-76909 | Msa1362620:intron | 20.0% |
| !!! | AGTACTTTTGACAATAAATT+TGG | - | tig0017892:77705-77724 | None:intergenic | 20.0% |
| !!! | ACAAGTTGATCAATTTATTT+AGG | + | tig0017892:77893-77912 | Msa1362620:intron | 20.0% |
| !! | TAAAAAATGGAAATTAAGAG+AGG | - | tig0017892:78378-78397 | None:intergenic | 20.0% |
| !!! | ATTATTTTATATTTGAGCGT+CGG | + | tig0017892:78398-78417 | Msa1362620:intron | 20.0% |
| !!! | AACATTAGGCTATAATTTTT+GGG | - | tig0017892:78671-78690 | None:intergenic | 20.0% |
| !!! | AAACATTAGGCTATAATTTT+TGG | - | tig0017892:78672-78691 | None:intergenic | 20.0% |
| !!! | AATACATTTCTTTTCATTGT+TGG | + | tig0017892:78792-78811 | Msa1362620:intron | 20.0% |
| !! | CGATAATTAAAAAATAATGG+AGG | - | tig0017892:79630-79649 | None:intergenic | 20.0% |
| !!! | CGATTTAAAAGAATGTTTTT+TGG | + | tig0017892:79648-79667 | Msa1362620:three_prime_UTR | 20.0% |
| !! | GAATGAAAGGCATATAAAAA+TGG | - | tig0017892:74136-74155 | None:intergenic | 25.0% |
| ! | CAAATGTGGAAAATTAAAAG+AGG | - | tig0017892:74158-74177 | None:intergenic | 25.0% |
| ! | GAACAAATTATAGACAAATG+TGG | - | tig0017892:74172-74191 | None:intergenic | 25.0% |
| ! | AATAAAAGGAAAAGTTGAGA+TGG | + | tig0017892:74390-74409 | Msa1362620:intron | 25.0% |
| ! | ATTATCATATGCTTTAATCG+AGG | + | tig0017892:74617-74636 | Msa1362620:intron | 25.0% |
| !! | TGTATAATGAGTTTTCCTAT+CGG | + | tig0017892:74834-74853 | Msa1362620:intron | 25.0% |
| ! | CATTTACCATTGAAAATCAT+TGG | - | tig0017892:74985-75004 | None:intergenic | 25.0% |
| ! | GGCAGAATTATAGTATTAAA+AGG | + | tig0017892:75120-75139 | Msa1362620:intron | 25.0% |
| ! | TTAGAATTTCACAATAAACG+AGG | + | tig0017892:75226-75245 | Msa1362620:intron | 25.0% |
| !!! | ATATAGTTTACTTTTGCCAA+AGG | + | tig0017892:75374-75393 | Msa1362620:intron | 25.0% |
| ! | CTCTAAATATAAGTTTCCTT+TGG | - | tig0017892:75393-75412 | None:intergenic | 25.0% |
| ! | AAAGAGATTAAGCATATGTT+TGG | + | tig0017892:75440-75459 | Msa1362620:intron | 25.0% |
| !!! | CTCTTATTTATTTTCCACAA+TGG | - | tig0017892:75754-75773 | None:intergenic | 25.0% |
| ! | CAATGAAAGCAACAATATAT+TGG | - | tig0017892:76630-76649 | None:intergenic | 25.0% |
| !!! | ATATATTGTTGCTTTCATTG+AGG | + | tig0017892:76630-76649 | Msa1362620:intron | 25.0% |
| ! | TGAATATTATATGATGCCAT+TGG | + | tig0017892:76667-76686 | Msa1362620:intron | 25.0% |
| !!! | ATAATGTTTTTGTCAACTAC+TGG | + | tig0017892:77005-77024 | Msa1362620:CDS | 25.0% |
| ! | ACCATAAATTTGAATAAAGC+CGG | - | tig0017892:77135-77154 | None:intergenic | 25.0% |
| ! | ATTGTATCAAAGGAATTACT+AGG | - | tig0017892:77237-77256 | None:intergenic | 25.0% |
| ! | TGGTAAAAGAATTGTATCAA+AGG | - | tig0017892:77247-77266 | None:intergenic | 25.0% |
| !! | TTTGATACAATTCTTTTACC+AGG | + | tig0017892:77246-77265 | Msa1362620:intron | 25.0% |
| !! | TTGATACAATTCTTTTACCA+GGG | + | tig0017892:77247-77266 | Msa1362620:intron | 25.0% |
| ! | CCATCATATATAAGATTAAG+AGG | - | tig0017892:77313-77332 | None:intergenic | 25.0% |
| ! | CCTCTTAATCTTATATATGA+TGG | + | tig0017892:77310-77329 | Msa1362620:intron | 25.0% |
| ! | TTATGCTAATTAGTTGGATT+AGG | - | tig0017892:77419-77438 | None:intergenic | 25.0% |
| ! | AATCTCAAGCATATTATTCA+TGG | - | tig0017892:77539-77558 | None:intergenic | 25.0% |
| !!! | AGGGATATTCATTTTTCTTT+TGG | + | tig0017892:77612-77631 | Msa1362620:intron | 25.0% |
| ! | ATAGAAAAAAACCACTAATC+TGG | + | tig0017892:77799-77818 | Msa1362620:intron | 25.0% |
| ! | TAATGAAGAAAATGTTGAGA+AGG | - | tig0017892:78077-78096 | None:intergenic | 25.0% |
| !! | TCAACATTTTCTTCATTACT+TGG | + | tig0017892:78079-78098 | Msa1362620:CDS | 25.0% |
| !!! | GTTTTAAACAAGTAAAGGTA+TGG | - | tig0017892:78170-78189 | None:intergenic | 25.0% |
| ! | TCATACAACATAACTTGATT+TGG | + | tig0017892:78196-78215 | Msa1362620:intron | 25.0% |
| ! | TAACCTATTGCAGATAAAAT+TGG | - | tig0017892:78227-78246 | None:intergenic | 25.0% |
| ! | TTTATATTGTCTTCCTTTGT+TGG | + | tig0017892:78280-78299 | Msa1362620:CDS | 25.0% |
| !!! | TTATTTTATATTTGAGCGTC+GGG | + | tig0017892:78399-78418 | Msa1362620:intron | 25.0% |
| !! | TTTTCATGGCATTTATTTGA+TGG | - | tig0017892:78636-78655 | None:intergenic | 25.0% |
| ! | AACAATAGACTAGAAACATT+AGG | - | tig0017892:78685-78704 | None:intergenic | 25.0% |
| !!! | AATGTATTTTGCTATGCTAT+TGG | + | tig0017892:79071-79090 | Msa1362620:CDS | 25.0% |
| ! | AACAAGAAACCATATGATAT+GGG | - | tig0017892:79156-79175 | None:intergenic | 25.0% |
| ! | AAACAAGAAACCATATGATA+TGG | - | tig0017892:79157-79176 | None:intergenic | 25.0% |
| ! | GTCAATGTAGAAATAAGAAA+CGG | + | tig0017892:79187-79206 | Msa1362620:intron | 25.0% |
| ! | TCAATGTAGAAATAAGAAAC+GGG | + | tig0017892:79188-79207 | Msa1362620:intron | 25.0% |
| ! | AAGACAGCTATAAAACTTTA+CGG | - | tig0017892:79298-79317 | None:intergenic | 25.0% |
| !! | TAAATGTTATAGCAAGTTGA+TGG | + | tig0017892:79491-79510 | Msa1362620:intron | 25.0% |
| GCATTTCTTTCTTCAATTGT+TGG | + | tig0017892:74077-74096 | Msa1362620:intron | 30.0% | |
| CATTCAATACTCTTCTTATC+TGG | - | tig0017892:74318-74337 | None:intergenic | 30.0% | |
| ! | GTATAATGAGTTTTCCTATC+GGG | + | tig0017892:74835-74854 | Msa1362620:intron | 30.0% |
| ! | TATAATGAGTTTTCCTATCG+GGG | + | tig0017892:74836-74855 | Msa1362620:intron | 30.0% |
| AAAAGTAACTCGGATGTTAA+AGG | + | tig0017892:74926-74945 | Msa1362620:intron | 30.0% | |
| AAAGTAACTCGGATGTTAAA+GGG | + | tig0017892:74927-74946 | Msa1362620:intron | 30.0% | |
| AGATTAAGCATATGTTTGGT+TGG | + | tig0017892:75444-75463 | Msa1362620:intron | 30.0% | |
| GATTAAGCATATGTTTGGTT+GGG | + | tig0017892:75445-75464 | Msa1362620:intron | 30.0% | |
| !!! | TAGCTTTTTAGCTTCTCTTA+CGG | - | tig0017892:75509-75528 | None:intergenic | 30.0% |
| TATATTAGTGTGATCCATTG+TGG | + | tig0017892:75737-75756 | Msa1362620:intron | 30.0% | |
| TATACTCTCTTATGAAGGTT+TGG | - | tig0017892:76044-76063 | None:intergenic | 30.0% | |
| CAACATATACTCTCTTATGA+AGG | - | tig0017892:76049-76068 | None:intergenic | 30.0% | |
| CAGTCACATGATTACTTATA+CGG | + | tig0017892:76132-76151 | Msa1362620:intron | 30.0% | |
| ! | TTTTCTGCATTACAGTATAG+AGG | + | tig0017892:76198-76217 | Msa1362620:five_prime_UTR | 30.0% |
| TTTCTGTGTTGAAGAAGATA+TGG | + | tig0017892:76300-76319 | Msa1362620:exon | 30.0% | |
| TTGAAGAAGATATGGAAACT+GGG | + | tig0017892:76308-76327 | Msa1362620:exon | 30.0% | |
| TCATATCCAATGATTCTTCA+TGG | + | tig0017892:76359-76378 | Msa1362620:CDS | 30.0% | |
| GGCTAAATGATATATGACAA+TGG | - | tig0017892:76537-76556 | None:intergenic | 30.0% | |
| !! | CACACAATTTGTTGGTTAAA+TGG | - | tig0017892:76595-76614 | None:intergenic | 30.0% |
| AAGTAGAACACACAATTTGT+TGG | - | tig0017892:76603-76622 | None:intergenic | 30.0% | |
| GAAAGCAACAATATATTGGA+TGG | - | tig0017892:76626-76645 | None:intergenic | 30.0% | |
| ATTCAACCTACAGGATTAAA+AGG | + | tig0017892:76712-76731 | Msa1362620:intron | 30.0% | |
| TACATGAAATTAGTCACGAA+AGG | + | tig0017892:76817-76836 | Msa1362620:intron | 30.0% | |
| TCATATTCATTTATGGTGAG+TGG | + | tig0017892:76897-76916 | Msa1362620:intron | 30.0% | |
| TGATATAGAATGTCTGAACT+TGG | - | tig0017892:76986-77005 | None:intergenic | 30.0% | |
| TAAAGCAAAAGAGAAACACA+TGG | + | tig0017892:77039-77058 | Msa1362620:CDS | 30.0% | |
| TAAATTTGAATAAAGCCGGA+AGG | - | tig0017892:77131-77150 | None:intergenic | 30.0% | |
| !! | TCCGGCTTTATTCAAATTTA+TGG | + | tig0017892:77131-77150 | Msa1362620:CDS | 30.0% |
| ACAGATTATGCATTTATACC+TGG | - | tig0017892:77185-77204 | None:intergenic | 30.0% | |
| ! | TGATACAATTCTTTTACCAG+GGG | + | tig0017892:77248-77267 | Msa1362620:intron | 30.0% |
| AGCTGATTATGCTAATTAGT+TGG | - | tig0017892:77425-77444 | None:intergenic | 30.0% | |
| !! | TCAACGTTTTAACAATAGCA+AGG | + | tig0017892:77592-77611 | Msa1362620:intron | 30.0% |
| !! | CAACGTTTTAACAATAGCAA+GGG | + | tig0017892:77593-77612 | Msa1362620:intron | 30.0% |
| ! | AAATGCAAAAGCACAGTATT+AGG | - | tig0017892:77831-77850 | None:intergenic | 30.0% |
| CAAACAACATCACATGAATA+TGG | - | tig0017892:77981-78000 | None:intergenic | 30.0% | |
| !! | GGATCATTTTGATGTACATT+TGG | + | tig0017892:78031-78050 | Msa1362620:CDS | 30.0% |
| ! | TCTCCAATTTTATCTGCAAT+AGG | + | tig0017892:78221-78240 | Msa1362620:intron | 30.0% |
| ! | TGTTGGTTGACAAATGATAA+TGG | + | tig0017892:78809-78828 | Msa1362620:intron | 30.0% |
| GGGATATGTAAGAAAGTTAT+TGG | - | tig0017892:78966-78985 | None:intergenic | 30.0% | |
| TGGAAAAAACCATAACCATA+TGG | - | tig0017892:79030-79049 | None:intergenic | 30.0% | |
| !! | TATTTTGCTATGCTATTGGT+TGG | + | tig0017892:79075-79094 | Msa1362620:CDS | 30.0% |
| TGATCATTGATGAATGACAA+TGG | - | tig0017892:79234-79253 | None:intergenic | 30.0% | |
| !! | TTATTGAGTTTTGTGGTTTC+TGG | - | tig0017892:79266-79285 | None:intergenic | 30.0% |
| ! | ACAACAGTTATTGAGTTTTG+TGG | - | tig0017892:79273-79292 | None:intergenic | 30.0% |
| AGACAGCTATAAAACTTTAC+GGG | - | tig0017892:79297-79316 | None:intergenic | 30.0% | |
| TATCAGCTCATTGAATTACT+TGG | - | tig0017892:79356-79375 | None:intergenic | 30.0% | |
| !!! | TGTTTTTTGGAAAGTCAGAA+AGG | + | tig0017892:79661-79680 | Msa1362620:three_prime_UTR | 30.0% |
| !!! | GTTTTTTGGAAAGTCAGAAA+GGG | + | tig0017892:79662-79681 | Msa1362620:three_prime_UTR | 30.0% |
| !! | AAACGCTTTGTTTGTGCTTT+CGG | - | tig0017892:73888-73907 | None:intergenic | 35.0% |
| GAAACAGAGAGAAATTGTTG+GGG | - | tig0017892:73911-73930 | None:intergenic | 35.0% | |
| GGAAACAGAGAGAAATTGTT+GGG | - | tig0017892:73912-73931 | None:intergenic | 35.0% | |
| TGGAAACAGAGAGAAATTGT+TGG | - | tig0017892:73913-73932 | None:intergenic | 35.0% | |
| TGAGAGATCGAAAAAGAGAA+TGG | + | tig0017892:73965-73984 | Msa1362620:five_prime_UTR | 35.0% | |
| ATCTATTAACGAGTGAACAC+TGG | - | tig0017892:74002-74021 | None:intergenic | 35.0% | |
| GAATGCAATTGCATAATCGA+CGG | + | tig0017892:74333-74352 | Msa1362620:intron | 35.0% | |
| AAAAGGAAAAGTTGAGATGG+TGG | + | tig0017892:74393-74412 | Msa1362620:intron | 35.0% | |
| TACTTCATGTGAGAGAAAGA+GGG | - | tig0017892:74504-74523 | None:intergenic | 35.0% | |
| TAAGCAAGCATTCATTGTTG+AGG | + | tig0017892:74571-74590 | Msa1362620:intron | 35.0% | |
| CTAGCAGTAAATTGTGTTGT+TGG | + | tig0017892:74675-74694 | Msa1362620:intron | 35.0% | |
| TTCAATGGTAAATGAGACCT+TGG | + | tig0017892:74991-75010 | Msa1362620:intron | 35.0% | |
| TGCAGAAAGAAAAAAAGCCA+AGG | - | tig0017892:75011-75030 | None:intergenic | 35.0% | |
| ATATACAAGCGCATGTTTGA+TGG | - | tig0017892:75479-75498 | None:intergenic | 35.0% | |
| !!! | TTTTTAGCTTCTCTTACGGT+GGG | - | tig0017892:75505-75524 | None:intergenic | 35.0% |
| GAAATATTTGCTTTAGCGGT+GGG | - | tig0017892:75574-75593 | None:intergenic | 35.0% | |
| TGAAATATTTGCTTTAGCGG+TGG | - | tig0017892:75575-75594 | None:intergenic | 35.0% | |
| TCTTATGAAGGTTTGGCAAT+CGG | - | tig0017892:76037-76056 | None:intergenic | 35.0% | |
| GTTGAAGAAGATATGGAAAC+TGG | + | tig0017892:76307-76326 | Msa1362620:exon | 35.0% | |
| TGAAGAAGATATGGAAACTG+GGG | + | tig0017892:76309-76328 | Msa1362620:exon | 35.0% | |
| ! | AAAGCAACAATGGTAATGAG+AGG | + | tig0017892:76332-76351 | Msa1362620:CDS | 35.0% |
| ACTGAACCATGAAGAATCAT+TGG | - | tig0017892:76368-76387 | None:intergenic | 35.0% | |
| ! | TTATGCCTTGATTTTTCTGC+TGG | + | tig0017892:76429-76448 | Msa1362620:CDS | 35.0% |
| ATTAGCCAGCAGAAAAATCA+AGG | - | tig0017892:76437-76456 | None:intergenic | 35.0% | |
| TCGTAGTGCTTTAACAGAAA+TGG | + | tig0017892:76486-76505 | Msa1362620:CDS | 35.0% | |
| ! | TGATTTGCCATAATAAGCGT+GGG | - | tig0017892:76570-76589 | None:intergenic | 35.0% |
| ! | ATGATTTGCCATAATAAGCG+TGG | - | tig0017892:76571-76590 | None:intergenic | 35.0% |
| ! | TTGCATCCTTTTAATCCTGT+AGG | - | tig0017892:76721-76740 | None:intergenic | 35.0% |
| ACAGGATTAAAAGGATGCAA+TGG | + | tig0017892:76721-76740 | Msa1362620:intron | 35.0% | |
| ! | AATGGTGGAAAAGACTGTTT+GGG | + | tig0017892:76739-76758 | Msa1362620:CDS | 35.0% |
| ! | TCACGAAAGGCTTTGTATAA+AGG | + | tig0017892:76830-76849 | Msa1362620:intron | 35.0% |
| GAATGTCTGAACTTGGATTA+AGG | - | tig0017892:76979-76998 | None:intergenic | 35.0% | |
| !!! | ATCCCATTTTTTCTACCTTC+CGG | + | tig0017892:77113-77132 | Msa1362620:CDS | 35.0% |
| GATTATGCATTTATACCTGG+AGG | - | tig0017892:77182-77201 | None:intergenic | 35.0% | |
| GGTAAAAGTAAGACTATACC+CGG | - | tig0017892:77292-77311 | None:intergenic | 35.0% | |
| ! | TGCTAATTAGTTGGATTAGG+AGG | - | tig0017892:77416-77435 | None:intergenic | 35.0% |
| !! | CACGTTGGTAAGATTTTCTT+CGG | + | tig0017892:77490-77509 | Msa1362620:intron | 35.0% |
| TTCTTCGGTTAGAGAAAAAC+AGG | + | tig0017892:77505-77524 | Msa1362620:intron | 35.0% | |
| !! | AAAAGTACTCTAGAGTGTAG+AGG | + | tig0017892:77716-77735 | Msa1362620:intron | 35.0% |
| !! | AAAGTACTCTAGAGTGTAGA+GGG | + | tig0017892:77717-77736 | Msa1362620:intron | 35.0% |
| AACACAGATCAGACAACAAT+TGG | - | tig0017892:77749-77768 | None:intergenic | 35.0% | |
| CAAAGCTTTACAGGTAGAAT+AGG | - | tig0017892:77857-77876 | None:intergenic | 35.0% | |
| ! | TCTACCTGTAAAGCTTTGAT+AGG | + | tig0017892:77859-77878 | Msa1362620:intron | 35.0% |
| TATGCCTATCAAAGCTTTAC+AGG | - | tig0017892:77866-77885 | None:intergenic | 35.0% | |
| ATCACATGAATATGGCTGTA+TGG | - | tig0017892:77973-77992 | None:intergenic | 35.0% | |
| AAAATGTTGAGAAGGCAAGA+AGG | - | tig0017892:78069-78088 | None:intergenic | 35.0% | |
| CACAGATAGAACATACTTTC+GGG | - | tig0017892:78146-78165 | None:intergenic | 35.0% | |
| CCACAGATAGAACATACTTT+CGG | - | tig0017892:78147-78166 | None:intergenic | 35.0% | |
| TATCTGCAATAGGTTAATGC+TGG | + | tig0017892:78231-78250 | Msa1362620:intron | 35.0% | |
| TAATGCTGGTATTCTAACTC+CGG | + | tig0017892:78245-78264 | Msa1362620:CDS | 35.0% | |
| CAAAACTGTTCAGCAAAAGT+TGG | - | tig0017892:78329-78348 | None:intergenic | 35.0% | |
| TTTGTGAGCTCATAACTATC+AGG | - | tig0017892:78561-78580 | None:intergenic | 35.0% | |
| ! | GGAATAAGTAGCAGTTTTCA+TGG | - | tig0017892:78650-78669 | None:intergenic | 35.0% |
| !! | CAAATGATAATGGCTGTTGT+TGG | + | tig0017892:78819-78838 | Msa1362620:intron | 35.0% |
| ! | GTTATTGCGACATTTTCAAC+AGG | + | tig0017892:78872-78891 | Msa1362620:CDS | 35.0% |
| ATTCAGAGTTTATGCTAACC+TGG | - | tig0017892:78916-78935 | None:intergenic | 35.0% | |
| GATGATGTACCATATGGTTA+TGG | + | tig0017892:79018-79037 | Msa1362620:CDS | 35.0% | |
| !!! | TTCCATTTTGTTTTTGCCAC+AGG | + | tig0017892:79045-79064 | Msa1362620:CDS | 35.0% |
| ATATCCTACTCTCCTGTATT+TGG | + | tig0017892:79130-79149 | Msa1362620:intron | 35.0% | |
| ATATGATATGGGCCAAATAC+AGG | - | tig0017892:79145-79164 | None:intergenic | 35.0% | |
| TGTATTTGGCCCATATCATA+TGG | + | tig0017892:79144-79163 | Msa1362620:intron | 35.0% | |
| TTCATTTACTATTCTGACCC+AGG | - | tig0017892:79567-79586 | None:intergenic | 35.0% | |
| GGGTCAGAATAGTAAATGAA+TGG | + | tig0017892:79567-79586 | Msa1362620:CDS | 35.0% | |
| CAGAATAGTAAATGAATGGC+TGG | + | tig0017892:79571-79590 | Msa1362620:CDS | 35.0% | |
| GAGAAAGACGAAGAAGATGA+AGG | - | tig0017892:74045-74064 | None:intergenic | 40.0% | |
| TCATCTTCTTCGTCTTTCTC+AGG | + | tig0017892:74045-74064 | Msa1362620:five_prime_UTR | 40.0% | |
| !! | GGTTGGTTACTTTGGAGTAA+AGG | + | tig0017892:74414-74433 | Msa1362620:intron | 40.0% |
| CTACTTCATGTGAGAGAAAG+AGG | - | tig0017892:74505-74524 | None:intergenic | 40.0% | |
| !! | TTTTCTGAGGGGAAATTTGC+AGG | - | tig0017892:74530-74549 | None:intergenic | 40.0% |
| !!! | CTCTACTAGCTTTTTCTGAG+GGG | - | tig0017892:74541-74560 | None:intergenic | 40.0% |
| !!! | CCTCTACTAGCTTTTTCTGA+GGG | - | tig0017892:74542-74561 | None:intergenic | 40.0% |
| !!! | ACCTCTACTAGCTTTTTCTG+AGG | - | tig0017892:74543-74562 | None:intergenic | 40.0% |
| TGCTAGAATCGTGATTGCAT+CGG | - | tig0017892:74661-74680 | None:intergenic | 40.0% | |
| TATGCAAATTTGTCCCCGAT+AGG | - | tig0017892:74852-74871 | None:intergenic | 40.0% | |
| ! | GTGGACCCAATGATTTTCAA+TGG | + | tig0017892:74976-74995 | Msa1362620:intron | 40.0% |
| ATTGATCGGAGTTCAAACCA+CGG | - | tig0017892:75255-75274 | None:intergenic | 40.0% | |
| !!! | CTTTTTAGCTTCTCTTACGG+TGG | - | tig0017892:75506-75525 | None:intergenic | 40.0% |
| ACTGTCGAACTTAGCTAAGT+TGG | + | tig0017892:75853-75872 | Msa1362620:intron | 40.0% | |
| TTATGAAGGTTTGGCAATCG+GGG | - | tig0017892:76035-76054 | None:intergenic | 40.0% | |
| CTTATGAAGGTTTGGCAATC+GGG | - | tig0017892:76036-76055 | None:intergenic | 40.0% | |
| AAGAGTCTGTCATCTGTCAT+GGG | - | tig0017892:76180-76199 | None:intergenic | 40.0% | |
| AAAGAGTCTGTCATCTGTCA+TGG | - | tig0017892:76181-76200 | None:intergenic | 40.0% | |
| CTACGCAGTACATGAATGAA+TGG | - | tig0017892:76278-76297 | None:intergenic | 40.0% | |
| TCCAAGGATTGGATGCATTT+CGG | - | tig0017892:76396-76415 | None:intergenic | 40.0% | |
| AAATGCATCCAATCCTTGGA+TGG | + | tig0017892:76396-76415 | Msa1362620:CDS | 40.0% | |
| ATATCTTGCCATCCAAGGAT+TGG | - | tig0017892:76407-76426 | None:intergenic | 40.0% | |
| TAAGCATATCTTGCCATCCA+AGG | - | tig0017892:76412-76431 | None:intergenic | 40.0% | |
| !! | TTTTCTGCTGGCTAATCTGT+TGG | + | tig0017892:76441-76460 | Msa1362620:CDS | 40.0% |
| GGATTAAAAGGATGCAATGG+TGG | + | tig0017892:76724-76743 | Msa1362620:intron | 40.0% | |
| ! | CAATGGTGGAAAAGACTGTT+TGG | + | tig0017892:76738-76757 | Msa1362620:CDS | 40.0% |
| ! | ATGGTGGAAAAGACTGTTTG+GGG | + | tig0017892:76740-76759 | Msa1362620:CDS | 40.0% |
| ! | GGTTAGTCAAGATTGCTTTG+TGG | + | tig0017892:77075-77094 | Msa1362620:CDS | 40.0% |
| AGCCGGAAGGTAGAAAAAAT+GGG | - | tig0017892:77118-77137 | None:intergenic | 40.0% | |
| AAGCCGGAAGGTAGAAAAAA+TGG | - | tig0017892:77119-77138 | None:intergenic | 40.0% | |
| TTATCTTTCAACAAGCCTCC+AGG | + | tig0017892:77164-77183 | Msa1362620:intron | 40.0% | |
| ! | TACAATTCTTTTACCAGGGG+AGG | + | tig0017892:77251-77270 | Msa1362620:intron | 40.0% |
| ! | TGTTCCTGTCATTCCTTTTC+AGG | + | tig0017892:77385-77404 | Msa1362620:intron | 40.0% |
| ! | GTTCCTGTCATTCCTTTTCA+GGG | + | tig0017892:77386-77405 | Msa1362620:intron | 40.0% |
| AAACCCTGAAAAGGAATGAC+AGG | - | tig0017892:77392-77411 | None:intergenic | 40.0% | |
| TTAGGAGGAAAACCCTGAAA+AGG | - | tig0017892:77401-77420 | None:intergenic | 40.0% | |
| GCATAATCAGCTTCATCACA+TGG | + | tig0017892:77433-77452 | Msa1362620:CDS | 40.0% | |
| CTGAAAAATATGCAGCACGT+TGG | + | tig0017892:77475-77494 | Msa1362620:CDS | 40.0% | |
| !! | AAGTACTCTAGAGTGTAGAG+GGG | + | tig0017892:77718-77737 | Msa1362620:intron | 40.0% |
| !! | TTAGGTTGATGCCAGATTAG+TGG | - | tig0017892:77813-77832 | None:intergenic | 40.0% |
| ! | CCGAAAGTATGTTCTATCTG+TGG | + | tig0017892:78144-78163 | Msa1362620:intron | 40.0% |
| AATGCTGGTATTCTAACTCC+GGG | + | tig0017892:78246-78265 | Msa1362620:CDS | 40.0% | |
| ! | ATGCTTAGCCAGTCTGTTTT+GGG | - | tig0017892:78484-78503 | None:intergenic | 40.0% |
| TGGATACACGTATGTGACAA+TGG | - | tig0017892:78616-78635 | None:intergenic | 40.0% | |
| CATAGATTCCAAATGCTTCC+AGG | + | tig0017892:78895-78914 | Msa1362620:CDS | 40.0% | |
| !! | TATGCTAACCTGGAAGCATT+TGG | - | tig0017892:78906-78925 | None:intergenic | 40.0% |
| CTCCTGTGGCAAAAACAAAA+TGG | - | tig0017892:79050-79069 | None:intergenic | 40.0% | |
| AGCAAAATACATTGCTCCTG+TGG | - | tig0017892:79064-79083 | None:intergenic | 40.0% | |
| ! | TTGCTATGCTATTGGTTGGA+TGG | + | tig0017892:79079-79098 | Msa1362620:CDS | 40.0% |
| TTGCATGACAGAATATCAGC+TGG | + | tig0017892:79320-79339 | Msa1362620:intron | 40.0% | |
| CATTGAATTACTTGGCGTCA+GGG | - | tig0017892:79348-79367 | None:intergenic | 40.0% | |
| TCATTGAATTACTTGGCGTC+AGG | - | tig0017892:79349-79368 | None:intergenic | 40.0% | |
| TTCTCACTTGTAGTGTTCGT+TGG | + | tig0017892:79436-79455 | Msa1362620:intron | 40.0% | |
| TGCAGATGGACAATTGATGT+GGG | + | tig0017892:79530-79549 | Msa1362620:intron | 40.0% | |
| TTAACGAGTGAACACTGGAG+CGG | - | tig0017892:73997-74016 | None:intergenic | 45.0% | |
| GAAGAAGATGAAGGCAATGG+TGG | - | tig0017892:74036-74055 | None:intergenic | 45.0% | |
| GACGAAGAAGATGAAGGCAA+TGG | - | tig0017892:74039-74058 | None:intergenic | 45.0% | |
| ! | GGAAAAGTTGAGATGGTGGT+TGG | + | tig0017892:74397-74416 | Msa1362620:intron | 45.0% |
| ! | GAGATGGTGGTTGGTTACTT+TGG | + | tig0017892:74406-74425 | Msa1362620:intron | 45.0% |
| CCCTCAGAAAAAGCTAGTAG+AGG | + | tig0017892:74539-74558 | Msa1362620:intron | 45.0% | |
| CACAATAAACGAGGAATCCG+TGG | + | tig0017892:75235-75254 | Msa1362620:intron | 45.0% | |
| CTAAGCTTCTTCTCCAACGT+GGG | + | tig0017892:75526-75545 | Msa1362620:intron | 45.0% | |
| ! | CGAACTTAGCTAAGTTGGCA+AGG | + | tig0017892:75858-75877 | Msa1362620:intron | 45.0% |
| GAAACTGGGGAAAGCAACAA+TGG | + | tig0017892:76322-76341 | Msa1362620:CDS | 45.0% | |
| TCCGAAATGCATCCAATCCT+TGG | + | tig0017892:76392-76411 | Msa1362620:CDS | 45.0% | |
| TTGCAGTCCCACGCTTATTA+TGG | + | tig0017892:76560-76579 | Msa1362620:intron | 45.0% | |
| TGGTGGAAAAGACTGTTTGG+GGG | + | tig0017892:76741-76760 | Msa1362620:CDS | 45.0% | |
| AAGAGAAACACATGGCACTC+TGG | + | tig0017892:77047-77066 | Msa1362620:CDS | 45.0% | |
| ! | AATTCTTTTACCAGGGGAGG+TGG | + | tig0017892:77254-77273 | Msa1362620:intron | 45.0% |
| CACCAAACAGACGACATATG+CGG | - | tig0017892:78010-78029 | None:intergenic | 45.0% | |
| GCATATGTCGTCTGTTTGGT+GGG | + | tig0017892:78009-78028 | Msa1362620:CDS | 45.0% | |
| ! | CATATGTCGTCTGTTTGGTG+GGG | + | tig0017892:78010-78029 | Msa1362620:CDS | 45.0% |
| ATGCTGGTATTCTAACTCCG+GGG | + | tig0017892:78247-78266 | Msa1362620:CDS | 45.0% | |
| TTCTAATGGCGCACCAACAA+AGG | - | tig0017892:78296-78315 | None:intergenic | 45.0% | |
| TTTGTTGGTGCGCCATTAGA+AGG | + | tig0017892:78295-78314 | Msa1362620:CDS | 45.0% | |
| TTGGCAAACCTGCCTTCTAA+TGG | - | tig0017892:78310-78329 | None:intergenic | 45.0% | |
| ! | GATGCTTAGCCAGTCTGTTT+TGG | - | tig0017892:78485-78504 | None:intergenic | 45.0% |
| CTTACATATCCCTGCAGTTC+CGG | + | tig0017892:78974-78993 | Msa1362620:intron | 45.0% | |
| TATGGTACATCATCCTCTGC+TGG | - | tig0017892:79012-79031 | None:intergenic | 45.0% | |
| GCAGAGGATGATGTACCATA+TGG | + | tig0017892:79012-79031 | Msa1362620:CDS | 45.0% | |
| TGCCTTCATTCTTCTGCAGA+TGG | + | tig0017892:79516-79535 | Msa1362620:intron | 45.0% | |
| GTCCATCTGCAGAAGAATGA+AGG | - | tig0017892:79521-79540 | None:intergenic | 45.0% | |
| CTGCAGATGGACAATTGATG+TGG | + | tig0017892:79529-79548 | Msa1362620:intron | 45.0% | |
| GCAGATGGACAATTGATGTG+GGG | + | tig0017892:79531-79550 | Msa1362620:intron | 45.0% | |
| !!! | TTTATTTTTAATACTAATAT+AGG | - | tig0017892:74747-74766 | None:intergenic | 5.0% |
| !! | ATATTTATTAAGTAATTTAA+TGG | + | tig0017892:75203-75222 | Msa1362620:intron | 5.0% |
| !! | CGTGATTGCATCGGCTGTAT+CGG | - | tig0017892:74652-74671 | None:intergenic | 50.0% |
| TGAAGCTCGAGGGTCATTGA+TGG | - | tig0017892:74954-74973 | None:intergenic | 50.0% | |
| TCAATGACCCTCGAGCTTCA+AGG | + | tig0017892:74954-74973 | Msa1362620:intron | 50.0% | |
| GCTAAGCTTCTTCTCCAACG+TGG | + | tig0017892:75525-75544 | Msa1362620:intron | 50.0% | |
| ! | TCCAACGTGGGTTTTTGTCG+CGG | + | tig0017892:75538-75557 | Msa1362620:intron | 50.0% |
| ! | TGCTGGCTAATCTGTTGGCA+TGG | + | tig0017892:76446-76465 | Msa1362620:CDS | 50.0% |
| GCTGGCTAATCTGTTGGCAT+GGG | + | tig0017892:76447-76466 | Msa1362620:CDS | 50.0% | |
| ATAAGCGTGGGACTGCAAGA+AGG | - | tig0017892:76558-76577 | None:intergenic | 50.0% | |
| AAAGACTGTTTGGGGGCTGA+AGG | + | tig0017892:76748-76767 | Msa1362620:CDS | 50.0% | |
| GAAACACATGGCACTCTGGA+TGG | + | tig0017892:77051-77070 | Msa1362620:CDS | 50.0% | |
| GACCGCATATGTCGTCTGTT+TGG | + | tig0017892:78005-78024 | Msa1362620:CDS | 50.0% | |
| CGCATATGTCGTCTGTTTGG+TGG | + | tig0017892:78008-78027 | Msa1362620:CDS | 50.0% | |
| TTGAGAAGGCAAGAAGGCTC+TGG | - | tig0017892:78063-78082 | None:intergenic | 50.0% | |
| TATTCTAACTCCGGGGCTGA+TGG | + | tig0017892:78254-78273 | Msa1362620:CDS | 50.0% | |
| ATTCTAACTCCGGGGCTGAT+GGG | + | tig0017892:78255-78274 | Msa1362620:CDS | 50.0% | |
| ATATAAAGCCCCATCAGCCC+CGG | - | tig0017892:78267-78286 | None:intergenic | 50.0% | |
| TTTGTCTGCAGTGAACCTGC+TGG | + | tig0017892:78427-78446 | Msa1362620:CDS | 50.0% | |
| ! | CTGATGCAGTTTTCTCCAGC+AGG | - | tig0017892:78445-78464 | None:intergenic | 50.0% |
| CTGCTGGAGAAAACTGCATC+AGG | + | tig0017892:78443-78462 | Msa1362620:CDS | 50.0% | |
| ACTCTGCACCCAAAACAGAC+TGG | + | tig0017892:78473-78492 | Msa1362620:CDS | 50.0% | |
| ATCATCCTTCCGGAACTGCA+GGG | - | tig0017892:78986-79005 | None:intergenic | 50.0% | |
| TATCATCCTTCCGGAACTGC+AGG | - | tig0017892:78987-79006 | None:intergenic | 50.0% | |
| CTGCTGGTGTATCATCCTTC+CGG | - | tig0017892:78996-79015 | None:intergenic | 50.0% | |
| GAAGGATGATACACCAGCAG+AGG | + | tig0017892:78996-79015 | Msa1362620:CDS | 50.0% | |
| TGGGCCAAATACAGGAGAGT+AGG | - | tig0017892:79137-79156 | None:intergenic | 50.0% | |
| TTTGTGGCACTGCTGAGTGA+TGG | - | tig0017892:79385-79404 | None:intergenic | 50.0% | |
| GATGGACAATTGATGTGGGG+TGG | + | tig0017892:79534-79553 | Msa1362620:intron | 50.0% | |
| TACTATTCTGACCCAGGTGC+TGG | - | tig0017892:79561-79580 | None:intergenic | 50.0% | |
| ATGACCCTCGAGCTTCAAGG+TGG | + | tig0017892:74957-74976 | Msa1362620:intron | 55.0% | |
| TCCGCGACAAAAACCCACGT+TGG | - | tig0017892:75542-75561 | None:intergenic | 55.0% | |
| ! | AGGCGTTTTGCGTGTGAGCT+TGG | + | tig0017892:76768-76787 | Msa1362620:CDS | 55.0% |
| ! | GGCGTTTTGCGTGTGAGCTT+GGG | + | tig0017892:76769-76788 | Msa1362620:CDS | 55.0% |
| ACACATGGCACTCTGGATGG+TGG | + | tig0017892:77054-77073 | Msa1362620:CDS | 55.0% | |
| GAGACACGCTGGTCATGAGT+TGG | - | tig0017892:78119-78138 | None:intergenic | 55.0% | |
| TTCTAACTCCGGGGCTGATG+GGG | + | tig0017892:78256-78275 | Msa1362620:CDS | 55.0% | |
| TTGGTGCGCCATTAGAAGGC+AGG | + | tig0017892:78299-78318 | Msa1362620:CDS | 55.0% | |
| CATATCCCTGCAGTTCCGGA+AGG | + | tig0017892:78978-78997 | Msa1362620:intron | 55.0% | |
| GGGTCCACCTTGAAGCTCGA+GGG | - | tig0017892:74964-74983 | None:intergenic | 60.0% | |
| TGGGTCCACCTTGAAGCTCG+AGG | - | tig0017892:74965-74984 | None:intergenic | 60.0% | |
| ! | GCATGGGCTGCTCGTGACTA+TGG | + | tig0017892:76463-76482 | Msa1362620:CDS | 60.0% |
| !! | GAGGTGGCGCATTTTGGTGC+CGG | + | tig0017892:77270-77289 | Msa1362620:CDS | 60.0% |
| !!! | AGGTGGCGCATTTTGGTGCC+GGG | + | tig0017892:77271-77290 | Msa1362620:CDS | 60.0% |
| ! | TTTCGGGTGCAGAGACACGC+TGG | - | tig0017892:78130-78149 | None:intergenic | 60.0% |
| CGAGTGAACACTGGAGCGGC+TGG | - | tig0017892:73993-74012 | None:intergenic | 65.0% | |
| CCAAAATGCGCCACCTCCCC+TGG | - | tig0017892:77267-77286 | None:intergenic | 65.0% | |
| ! | CCAGGGGAGGTGGCGCATTT+TGG | + | tig0017892:77264-77283 | Msa1362620:intron | 65.0% |
| ATGTGGGGTGGACCAGCACC+TGG | + | tig0017892:79546-79565 | Msa1362620:CDS | 65.0% | |
| TGTGGGGTGGACCAGCACCT+GGG | + | tig0017892:79547-79566 | Msa1362620:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0017892 | gene | 73853 | 79708 | 73853 | ID=Msa1362620;Name=Msa1362620 |
| tig0017892 | mRNA | 73853 | 79708 | 73853 | ID=Msa1362620-mRNA-1;Parent=Msa1362620;Name=Msa1362620-mRNA-1;_AED=0.19;_eAED=0.19;_QI=346|0.90|0.83|1|0.27|0.33|12|65|399 |
| tig0017892 | exon | 73853 | 74066 | 73853 | ID=Msa1362620-mRNA-1:exon:13088;Parent=Msa1362620-mRNA-1 |
| tig0017892 | exon | 76187 | 76511 | 76187 | ID=Msa1362620-mRNA-1:exon:13089;Parent=Msa1362620-mRNA-1 |
| tig0017892 | exon | 76725 | 76798 | 76725 | ID=Msa1362620-mRNA-1:exon:13090;Parent=Msa1362620-mRNA-1 |
| tig0017892 | exon | 76993 | 77152 | 76993 | ID=Msa1362620-mRNA-1:exon:13091;Parent=Msa1362620-mRNA-1 |
| tig0017892 | exon | 77268 | 77292 | 77268 | ID=Msa1362620-mRNA-1:exon:13092;Parent=Msa1362620-mRNA-1 |
| tig0017892 | exon | 77407 | 77496 | 77407 | ID=Msa1362620-mRNA-1:exon:13093;Parent=Msa1362620-mRNA-1 |
| tig0017892 | exon | 77978 | 78149 | 77978 | ID=Msa1362620-mRNA-1:exon:13094;Parent=Msa1362620-mRNA-1 |
| tig0017892 | exon | 78243 | 78320 | 78243 | ID=Msa1362620-mRNA-1:exon:13095;Parent=Msa1362620-mRNA-1 |
| tig0017892 | exon | 78415 | 78507 | 78415 | ID=Msa1362620-mRNA-1:exon:13096;Parent=Msa1362620-mRNA-1 |
| tig0017892 | exon | 78845 | 78916 | 78845 | ID=Msa1362620-mRNA-1:exon:13097;Parent=Msa1362620-mRNA-1 |
| tig0017892 | exon | 78991 | 79124 | 78991 | ID=Msa1362620-mRNA-1:exon:13098;Parent=Msa1362620-mRNA-1 |
| tig0017892 | exon | 79535 | 79708 | 79535 | ID=Msa1362620-mRNA-1:exon:13099;Parent=Msa1362620-mRNA-1 |
| tig0017892 | five_prime_UTR | 73853 | 74066 | 73853 | ID=Msa1362620-mRNA-1:five_prime_utr;Parent=Msa1362620-mRNA-1 |
| tig0017892 | five_prime_UTR | 76187 | 76318 | 76187 | ID=Msa1362620-mRNA-1:five_prime_utr;Parent=Msa1362620-mRNA-1 |
| tig0017892 | CDS | 76319 | 76511 | 76319 | ID=Msa1362620-mRNA-1:cds;Parent=Msa1362620-mRNA-1 |
| tig0017892 | CDS | 76725 | 76798 | 76725 | ID=Msa1362620-mRNA-1:cds;Parent=Msa1362620-mRNA-1 |
| tig0017892 | CDS | 76993 | 77152 | 76993 | ID=Msa1362620-mRNA-1:cds;Parent=Msa1362620-mRNA-1 |
| tig0017892 | CDS | 77268 | 77292 | 77268 | ID=Msa1362620-mRNA-1:cds;Parent=Msa1362620-mRNA-1 |
| tig0017892 | CDS | 77407 | 77496 | 77407 | ID=Msa1362620-mRNA-1:cds;Parent=Msa1362620-mRNA-1 |
| tig0017892 | CDS | 77978 | 78149 | 77978 | ID=Msa1362620-mRNA-1:cds;Parent=Msa1362620-mRNA-1 |
| tig0017892 | CDS | 78243 | 78320 | 78243 | ID=Msa1362620-mRNA-1:cds;Parent=Msa1362620-mRNA-1 |
| tig0017892 | CDS | 78415 | 78507 | 78415 | ID=Msa1362620-mRNA-1:cds;Parent=Msa1362620-mRNA-1 |
| tig0017892 | CDS | 78845 | 78916 | 78845 | ID=Msa1362620-mRNA-1:cds;Parent=Msa1362620-mRNA-1 |
| tig0017892 | CDS | 78991 | 79124 | 78991 | ID=Msa1362620-mRNA-1:cds;Parent=Msa1362620-mRNA-1 |
| tig0017892 | CDS | 79535 | 79643 | 79535 | ID=Msa1362620-mRNA-1:cds;Parent=Msa1362620-mRNA-1 |
| tig0017892 | three_prime_UTR | 79644 | 79708 | 79644 | ID=Msa1362620-mRNA-1:three_prime_utr;Parent=Msa1362620-mRNA-1 |
| Gene Sequence |
| Protein sequence |
