AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0989500

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0989500 MtrunA17_Chr8g0390691 97.917 144 3 0 1 144 1 144 3.62e-101 295
Msa0989500 MtrunA17_Chr6g0485111 60.135 148 55 2 1 144 1 148 3.65e-55 177
Msa0989500 MtrunA17_Chr1g0169271 52.679 112 52 1 34 144 51 162 6.10e-36 128
Msa0989500 MtrunA17_Chr2g0287641 30.631 111 76 1 34 143 28 138 3.94e-14 68.2
Msa0989500 MtrunA17_Chr7g0237091 30.631 111 75 1 34 142 31 141 9.61e-12 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0989500 AT3G24460.2 62.252 151 49 2 1 144 1 150 3.11e-63 199
Msa0989500 AT3G24460.1 62.252 151 49 2 1 144 1 150 3.11e-63 199
Msa0989500 AT4G13345.3 63.699 146 48 2 1 144 1 143 1.15e-53 171
Msa0989500 AT4G13345.7 63.699 146 48 2 1 144 1 143 1.15e-53 171
Msa0989500 AT4G13345.5 63.699 146 48 2 1 144 1 143 2.44e-53 172
Msa0989500 AT4G13345.4 63.699 146 48 2 1 144 1 143 8.15e-53 172
Msa0989500 AT4G13345.1 63.699 146 48 2 1 144 1 143 1.16e-52 171
Msa0989500 AT4G13345.2 63.699 146 48 2 1 144 1 143 1.22e-52 171
Msa0989500 AT4G13345.6 63.699 146 48 2 1 144 1 143 1.22e-52 171
Msa0989500 AT2G33205.3 45.802 131 68 2 15 144 32 160 1.02e-31 115
Msa0989500 AT2G33205.4 45.802 131 68 2 15 144 32 160 1.02e-31 115
Msa0989500 AT2G33205.6 45.802 131 68 2 15 144 32 160 1.96e-31 115
Msa0989500 AT2G33205.9 45.802 131 68 2 15 144 32 160 4.46e-31 115
Msa0989500 AT2G33205.8 45.802 131 68 2 15 144 32 160 5.61e-31 115
Msa0989500 AT2G33205.5 45.802 131 68 2 15 144 32 160 5.61e-31 115
Msa0989500 AT2G33205.1 45.802 131 68 2 15 144 32 160 5.65e-31 115
Msa0989500 AT3G06170.1 30.631 111 76 1 34 143 29 139 2.01e-12 63.5
Msa0989500 AT1G16180.2 30.631 111 75 1 34 142 31 141 1.01e-11 61.6
Msa0989500 AT1G16180.1 30.631 111 75 1 34 142 31 141 1.01e-11 61.6
Msa0989500 AT2G33205.2 45.902 61 33 0 84 144 5 65 1.99e-11 60.5

Find 123 sgRNAs with CRISPR-Local

Find 402 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCGGCTTTATTCAAATTTA+TGG 0.115224 6_4:-46430837 Msa0989500:CDS
CCAGGGGAGGTGGCGCATTT+TGG 0.174364 6_4:-46430704 Msa0989500:three_prime_UTR
AAACGCTTTGTTTGTGCTTT+CGG 0.261674 6_4:+46434314 None:intergenic
GATGCTTAGCCAGTCTGTTT+TGG 0.263287 6_4:+46429485 None:intergenic
ATTCAACCTACAGGATTAAA+AGG 0.275412 6_4:-46431249 Msa0989500:intron
TTTATATTGTCTTCCTTTGT+TGG 0.276198 6_4:-46429687 Msa0989500:three_prime_UTR
CTGGACAGAATCAATGTTTC+TGG 0.284057 6_4:-46427514 Msa0989500:three_prime_UTR
TATATGTACATCTGAGATTT+GGG 0.294443 6_4:+46427631 None:intergenic
CTATATGTACATCTGAGATT+TGG 0.304588 6_4:+46427630 None:intergenic
TGCACGCATACTGGTTGAAT+TGG 0.334492 6_4:-46427485 Msa0989500:three_prime_UTR
TCCAAGGATTGGATGCATTT+CGG 0.359677 6_4:+46431563 None:intergenic
CAAACAACATCACATGAATA+TGG 0.364727 6_4:+46429989 None:intergenic
TTTCTGTGTTGAAGAAGATA+TGG 0.365734 6_4:-46431656 Msa0989500:exon
ATGTGGGGTGGACCAGCACC+TGG 0.368671 6_4:-46428414 Msa0989500:three_prime_UTR
GACCGCATATGTCGTCTGTT+TGG 0.370819 6_4:-46429962 Msa0989500:three_prime_UTR
TCATATCCAATGATTCTTCA+TGG 0.371838 6_4:-46431597 Msa0989500:CDS
CATAGATTCCAAATGCTTCC+AGG 0.376091 6_4:-46429072 Msa0989500:intron
TGCTGATAGCTCCAATGATA+TGG 0.380094 6_4:-46427743 Msa0989500:three_prime_UTR
TTATGCTAATTAGTTGGATT+AGG 0.382452 6_4:+46430552 None:intergenic
GTTGAAGAAGATATGGAAAC+TGG 0.390734 6_4:-46431649 Msa0989500:exon
CAAGGGTGGAAAAGACTGTT+TGG 0.394075 6_4:-46431223 Msa0989500:CDS
TATGCTAACCTGGAAGCATT+TGG 0.394190 6_4:+46429064 None:intergenic
GATGATGTACCATATGGTTA+TGG 0.398590 6_4:-46428949 Msa0989500:three_prime_UTR
AGCTGATTATGCTAATTAGT+TGG 0.402425 6_4:+46430546 None:intergenic
TGCTGGCTAATCTGTTGGCA+TGG 0.404877 6_4:-46431510 Msa0989500:CDS
GGAAACAGAGAGAAATTGTT+GGG 0.407075 6_4:+46434290 None:intergenic
GCATGGGCTGCTCGTGACTA+TGG 0.408101 6_4:-46431493 Msa0989500:CDS
TGTCTGCACTTCCATATCAT+TGG 0.413613 6_4:+46427732 None:intergenic
ATTCTAACTCCAGGGCTGAT+GGG 0.414558 6_4:-46429712 Msa0989500:three_prime_UTR
CTGCTGGTGTATCATCCTTC+CGG 0.415225 6_4:+46428974 None:intergenic
TCGTAGTGCTTTAACAGAAA+TGG 0.420048 6_4:-46431470 Msa0989500:CDS
TGGCACAAATGCACGCATAC+TGG 0.421483 6_4:-46427494 Msa0989500:three_prime_UTR
TCATCTTCTTCGTCTTTCTC+AGG 0.423423 6_4:-46434154 Msa0989500:intron
TACTATTCTGACCCAGGTGC+TGG 0.425466 6_4:+46428402 None:intergenic
TATTCTAACTCCAGGGCTGA+TGG 0.432842 6_4:-46429713 Msa0989500:three_prime_UTR
TTGGCAAACCTGCCTTCTAA+TGG 0.434037 6_4:+46429660 None:intergenic
TCCGAAATGCATCCAATCCT+TGG 0.436210 6_4:-46431564 Msa0989500:CDS
AATCTCAGATGTACATATAG+TGG 0.439695 6_4:-46427627 Msa0989500:three_prime_UTR
ACTGAACCATGAAGAATCAT+TGG 0.442403 6_4:+46431591 None:intergenic
CCAAAATGCGCCACCTCCCC+TGG 0.443467 6_4:+46430704 None:intergenic
CTGCTGGAGAAAACTGCATC+AGG 0.444077 6_4:-46429524 Msa0989500:three_prime_UTR
AAGGGTGGAAAAGACTGTTT+GGG 0.455796 6_4:-46431222 Msa0989500:CDS
TTTGTTGGTGCGCCATTAGA+AGG 0.456775 6_4:-46429672 Msa0989500:intron
GTGACACATGTACAGGTAAG+AGG 0.462256 6_4:+46427393 None:intergenic
TGCTAATTAGTTGGATTAGG+AGG 0.469122 6_4:+46430555 None:intergenic
ACAGTCCTTTCACTTTATGA+AGG 0.472907 6_4:-46427435 Msa0989500:three_prime_UTR
TTCTAACTCCAGGGCTGATG+GGG 0.479038 6_4:-46429711 Msa0989500:three_prime_UTR
GCATATGTCGTCTGTTTGGT+GGG 0.483780 6_4:-46429958 Msa0989500:three_prime_UTR
ACCATAAATTTGAATAAAGC+CGG 0.484335 6_4:+46430836 None:intergenic
CGCATATGTCGTCTGTTTGG+TGG 0.485949 6_4:-46429959 Msa0989500:three_prime_UTR
ACTCCTCCAGCTCTGAAGAT+AGG 0.488452 6_4:-46427604 Msa0989500:three_prime_UTR
GATTGTTCTTTAGTGTGCAC+TGG 0.494008 6_4:-46427533 Msa0989500:three_prime_UTR
ACAAAATTTCATAACTAGCA+TGG 0.497646 6_4:+46427678 None:intergenic
CAGTCCTTTCACTTTATGAA+GGG 0.503149 6_4:-46427434 Msa0989500:three_prime_UTR
TATCTGCAATAGGTTAATGC+TGG 0.506107 6_4:-46429736 Msa0989500:intron
GCTGGCTAATCTGTTGGCAT+GGG 0.507922 6_4:-46431509 Msa0989500:CDS
CAGAATAGTAAATGAATGGC+TGG 0.508449 6_4:-46428389 Msa0989500:three_prime_UTR
TTGCTATGCTATTGGTTGGA+TGG 0.512496 6_4:-46428888 Msa0989500:three_prime_UTR
TTATCTTTCAACAAGCCTCC+AGG 0.513952 6_4:-46430804 Msa0989500:three_prime_UTR
ATATAAAGCCCCATCAGCCC+TGG 0.514306 6_4:+46429703 None:intergenic
CGAGTGAACACTGGAGCGGC+TGG 0.514328 6_4:+46434209 None:intergenic
TTGAGAAGGCAAGAAGGCTC+TGG 0.515041 6_4:+46429907 None:intergenic
TTCTAATGGCGCACCAACAA+AGG 0.520794 6_4:+46429674 None:intergenic
TGGAAACAGAGAGAAATTGT+TGG 0.521277 6_4:+46434289 None:intergenic
TTTCCTATCTTCAGAGCTGG+AGG 0.523292 6_4:+46427601 None:intergenic
GCAGAGGATGATGTACCATA+TGG 0.526809 6_4:-46428955 Msa0989500:three_prime_UTR
GGTTAGTCAAGATTGCTTTG+TGG 0.532718 6_4:-46430893 Msa0989500:CDS
AATGCTGGTATTCTAACTCC+AGG 0.540072 6_4:-46429721 Msa0989500:three_prime_UTR
AAGAGAAACACATGGCACTC+TGG 0.544859 6_4:-46430921 Msa0989500:CDS
GGGTCAGAATAGTAAATGAA+TGG 0.544936 6_4:-46428393 Msa0989500:three_prime_UTR
CTACGCAGTACATGAATGAA+TGG 0.545736 6_4:+46431681 None:intergenic
ATATCTTGCCATCCAAGGAT+TGG 0.547635 6_4:+46431552 None:intergenic
TTCATTTACTATTCTGACCC+AGG 0.547987 6_4:+46428396 None:intergenic
ATTGTATCAAAGGAATTACT+AGG 0.550438 6_4:+46430734 None:intergenic
TAATCCCTTCATAAAGTGAA+AGG 0.551009 6_4:+46427430 None:intergenic
TTTGTATGCAGTGAACCTGC+TGG 0.553034 6_4:-46429540 Msa0989500:intron
TACAGGATTAAAAGGATGCA+AGG 0.553690 6_4:-46431241 Msa0989500:intron
GAGACACGCTGGTCATGAGT+TGG 0.556515 6_4:+46429851 None:intergenic
TATGGTACATCATCCTCTGC+TGG 0.564240 6_4:+46428958 None:intergenic
TGGTAAAAGAATTGTATCAA+AGG 0.567821 6_4:+46430724 None:intergenic
ATCTATTAACGAGTGAACAC+TGG 0.570516 6_4:+46434200 None:intergenic
GAGAAAGACGAAGAAGATGA+AGG 0.572170 6_4:+46434157 None:intergenic
TTTCTCAGTGACACATGTAC+AGG 0.572489 6_4:+46427386 None:intergenic
TAAGCATATCTTGCCATCCA+AGG 0.572921 6_4:+46431547 None:intergenic
TAATGAAGAAAATGTTGAGA+AGG 0.573025 6_4:+46429893 None:intergenic
GAAGAAGATGAAGGCAATGG+TGG 0.578051 6_4:+46434166 None:intergenic
AAATGCATCCAATCCTTGGA+TGG 0.580170 6_4:-46431560 Msa0989500:CDS
ACAGATTATGCATTTATACC+TGG 0.583877 6_4:+46430786 None:intergenic
ATATGGAAGTGCAGACAAGT+TGG 0.587366 6_4:-46427726 Msa0989500:three_prime_UTR
ACTCTGCACCCAAAACAGAC+TGG 0.587891 6_4:-46429494 Msa0989500:three_prime_UTR
GAAACACATGGCACTCTGGA+TGG 0.590908 6_4:-46430917 Msa0989500:CDS
TGCAGATGGACAATTGATGT+GGG 0.592361 6_4:-46428430 Msa0989500:intron
AGCAAAATACATTGCTCCCG+TGG 0.597392 6_4:+46428906 None:intergenic
CTGCAGATGGACAATTGATG+TGG 0.599876 6_4:-46428431 Msa0989500:intron
TGTGGGGTGGACCAGCACCT+GGG 0.602163 6_4:-46428413 Msa0989500:three_prime_UTR
TTGAAGAAGATATGGAAACT+GGG 0.607550 6_4:-46431648 Msa0989500:exon
AAAATGTTGAGAAGGCAAGA+AGG 0.607677 6_4:+46429901 None:intergenic
GCATAATCAGCTTCATCACA+TGG 0.608507 6_4:-46430535 Msa0989500:three_prime_UTR
CATATGTCGTCTGTTTGGTG+GGG 0.610341 6_4:-46429957 Msa0989500:three_prime_UTR
CATATCCCTGCAGTTCCGGA+AGG 0.616238 6_4:-46428989 Msa0989500:intron
GGATTAAAAGGATGCAAGGG+TGG 0.618040 6_4:-46431237 Msa0989500:CDS
GAAACTGGGGAAAGCAACAA+TGG 0.619670 6_4:-46431634 Msa0989500:CDS
GATTATGCATTTATACCTGG+AGG 0.629309 6_4:+46430789 None:intergenic
TAAATTTGAATAAAGCCGGA+AGG 0.631409 6_4:+46430840 None:intergenic
TGACACATGTACAGGTAAGA+GGG 0.634087 6_4:+46427394 None:intergenic
GACGAAGAAGATGAAGGCAA+TGG 0.635154 6_4:+46434163 None:intergenic
TTTCGGGTGCAGAGACACGC+TGG 0.640882 6_4:+46429840 None:intergenic
ACAGGATTAAAAGGATGCAA+GGG 0.645616 6_4:-46431240 Msa0989500:intron
GATGGACAATTGATGTGGGG+TGG 0.645928 6_4:-46428426 Msa0989500:three_prime_UTR
TGAAGAAGATATGGAAACTG+GGG 0.648363 6_4:-46431647 Msa0989500:exon
GAAGGATGATACACCAGCAG+AGG 0.655362 6_4:-46428971 Msa0989500:three_prime_UTR
ATGCTGGTATTCTAACTCCA+GGG 0.658480 6_4:-46429720 Msa0989500:three_prime_UTR
ACACATGGCACTCTGGATGG+TGG 0.661486 6_4:-46430914 Msa0989500:CDS
GAAACAGAGAGAAATTGTTG+GGG 0.664760 6_4:+46434291 None:intergenic
ATATGTACATCTGAGATTTG+GGG 0.667159 6_4:+46427632 None:intergenic
AAAGCAACAATGGTAATGAG+AGG 0.674245 6_4:-46431624 Msa0989500:CDS
TTAACGAGTGAACACTGGAG+CGG 0.677562 6_4:+46434205 None:intergenic
AAGGACTGTATATCTTCATG+CGG 0.679521 6_4:+46427449 None:intergenic
CACCAAACAGACGACATATG+CGG 0.707786 6_4:+46429960 None:intergenic
GCAGATGGACAATTGATGTG+GGG 0.727203 6_4:-46428429 Msa0989500:intron
AGGGTGGAAAAGACTGTTTG+GGG 0.732005 6_4:-46431221 Msa0989500:CDS
GGGTGGAAAAGACTGTTTGG+GGG 0.746165 6_4:-46431220 Msa0989500:CDS
TAAAGCAAAAGAGAAACACA+TGG 0.747169 6_4:-46430929 Msa0989500:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTCAAATAATATATATTGAT+CGG + chr6_4:46428709-46428728 None:intergenic 10.0%
!!! AATTTATTTAGGATAATATA+AGG - chr6_4:46431572-46431591 Msa0989500:CDS 10.0%
!! AATCGATAATTAAAAAATAA+TGG + chr6_4:46433309-46433328 None:intergenic 10.0%
!!! ATGTTTTTTTCACATTTTTT+TGG - chr6_4:46427667-46427686 Msa0989500:three_prime_UTR 15.0%
!!! TTATTCTTTTCTAATTTTCT+CGG + chr6_4:46427813-46427832 None:intergenic 15.0%
!! GAAAATTAGAAAAGAATAAA+AGG - chr6_4:46427814-46427833 Msa0989500:intron 15.0%
!!! CTCTTTTTTCAAATAATATA+CGG + chr6_4:46428741-46428760 None:intergenic 15.0%
!!! TATTTAGAGTAATATGAATT+AGG - chr6_4:46428844-46428863 Msa0989500:intron 15.0%
!!! CTTATAATCTTATTTATTTG+TGG - chr6_4:46429226-46429245 Msa0989500:intron 15.0%
!! TAGTTATTCATATTCATTTA+TGG - chr6_4:46430558-46430577 Msa0989500:three_prime_UTR 15.0%
!! TTTATATAATATAAGCACAA+TGG + chr6_4:46431321-46431340 None:intergenic 15.0%
!! TGTGCTTATATTATATAAAA+AGG - chr6_4:46431322-46431341 Msa0989500:intron 15.0%
!!! AAAATGTTTTAAACAAGTAA+AGG + chr6_4:46431844-46431863 None:intergenic 15.0%
!! AAAAGTAATAAGATAGATAA+AGG + chr6_4:46432381-46432400 None:intergenic 15.0%
!!! TTTATCTATCTTATTACTTT+TGG - chr6_4:46432380-46432399 Msa0989500:intron 15.0%
!!! TTAGCTTGAATTTTATTATT+AGG - chr6_4:46432605-46432624 Msa0989500:intron 15.0%
!!! TTTCAATAAAAATGTTTTTG+TGG + chr6_4:46433077-46433096 None:intergenic 15.0%
!! TAATTTAAATCTTTGTCAAA+GGG + chr6_4:46433624-46433643 None:intergenic 15.0%
!! ATAATTTAAATCTTTGTCAA+AGG + chr6_4:46433625-46433644 None:intergenic 15.0%
!!! AAATTGTTTTAAGAGTAAAA+AGG + chr6_4:46433857-46433876 None:intergenic 15.0%
!! AGAGTATAAAAGATGAAAAA+TGG + chr6_4:46427370-46427389 None:intergenic 20.0%
!! AAAATTAAAAGAGGAATGAA+AGG + chr6_4:46427586-46427605 None:intergenic 20.0%
!! AAGTTTAAATATAGAAAGGA+GGG + chr6_4:46428160-46428179 None:intergenic 20.0%
!! TAAGTTTAAATATAGAAAGG+AGG + chr6_4:46428161-46428180 None:intergenic 20.0%
!! GAGTAAGTTTAAATATAGAA+AGG + chr6_4:46428164-46428183 None:intergenic 20.0%
!! ATACACAAAATATTATTGAG+AGG + chr6_4:46428257-46428276 None:intergenic 20.0%
!! AATTAATTGCAAAAGTAACT+CGG - chr6_4:46428356-46428375 Msa0989500:intron 20.0%
!! ATTTACCATTGAAAATCATT+GGG + chr6_4:46428424-46428443 None:intergenic 20.0%
!!! ATTGAATTTTACAAGCAAAA+AGG + chr6_4:46428479-46428498 None:intergenic 20.0%
!!! ACTCTTATTTTTATCTTCTA+TGG - chr6_4:46428539-46428558 Msa0989500:intron 20.0%
!! TTATGAAATATTTGCTTTAG+CGG + chr6_4:46429030-46429049 None:intergenic 20.0%
!!! ATTTTTGTCAATCATATTGA+TGG + chr6_4:46429117-46429136 None:intergenic 20.0%
!!! CTTTTATTTATTTTCCACAA+TGG + chr6_4:46429206-46429225 None:intergenic 20.0%
!!! AGAATCTTTCAAAAAAGTAT+TGG - chr6_4:46429535-46429554 Msa0989500:intron 20.0%
!! ACTGAAAAACAATCAAAAAA+TGG - chr6_4:46429679-46429698 Msa0989500:three_prime_UTR 20.0%
!!! TTAGATTTGATTTAAACCAA+TGG + chr6_4:46430361-46430380 None:intergenic 20.0%
!! TAATAATAAATTCAACCTAC+AGG - chr6_4:46430378-46430397 Msa0989500:intron 20.0%
!! TTTCATGTATATAACTGAAA+AGG + chr6_4:46430481-46430500 None:intergenic 20.0%
!!! AGTACTTTTGACAATAAATT+TGG + chr6_4:46431373-46431392 None:intergenic 20.0%
!!! ACAAGTTGATCAATTTATTT+AGG - chr6_4:46431561-46431580 Msa0989500:CDS 20.0%
!! TAAAAAATGGAAATTAAGAG+AGG + chr6_4:46432047-46432066 None:intergenic 20.0%
!!! AACATTAGGCTATAATTTTT+GGG + chr6_4:46432340-46432359 None:intergenic 20.0%
!!! AAACATTAGGCTATAATTTT+TGG + chr6_4:46432341-46432360 None:intergenic 20.0%
!!! AATACATTTCTTTTCATTGT+TGG - chr6_4:46432461-46432480 Msa0989500:intron 20.0%
!! CGATAATTAAAAAATAATGG+AGG + chr6_4:46433306-46433325 None:intergenic 20.0%
!!! CGATTTAAAAGAATGTTTTT+TGG - chr6_4:46433324-46433343 Msa0989500:intron 20.0%
!!! ATTGCTTTATTTAAGCAATT+TGG + chr6_4:46433742-46433761 None:intergenic 20.0%
!!! TTTTATTAACTCAGATTAAC+AGG - chr6_4:46433815-46433834 Msa0989500:intron 20.0%
!! TTTATTAACTCAGATTAACA+GGG - chr6_4:46433816-46433835 Msa0989500:intron 20.0%
!!! AACAATTTTTGTTGATAGTA+TGG - chr6_4:46433869-46433888 Msa0989500:intron 20.0%
!! GAATGAAAGGCATATAAAAA+TGG + chr6_4:46427573-46427592 None:intergenic 25.0%
! CAAATGTGGAAAATTAAAAG+AGG + chr6_4:46427595-46427614 None:intergenic 25.0%
! GAACAAATTATAGACAAATG+TGG + chr6_4:46427609-46427628 None:intergenic 25.0%
! AATAAAAGGAAAAGTTGAGA+TGG - chr6_4:46427828-46427847 Msa0989500:intron 25.0%
! ATTATCATATGCTTTAATCG+AGG - chr6_4:46428059-46428078 Msa0989500:intron 25.0%
! AAATAGAATTGTGATTGCAT+CGG + chr6_4:46428094-46428113 None:intergenic 25.0%
!! TGTATAATGAGTTTTCCTAT+CGG - chr6_4:46428272-46428291 Msa0989500:intron 25.0%
! CATTTACCATTGAAAATCAT+TGG + chr6_4:46428425-46428444 None:intergenic 25.0%
! GGCAGAATTATAGTATTAAA+AGG - chr6_4:46428560-46428579 Msa0989500:intron 25.0%
! TTAGAATTTCACAATAAACG+AGG - chr6_4:46428666-46428685 Msa0989500:intron 25.0%
!!! ATATAGTTTACTTTTGCCAA+AGG - chr6_4:46428814-46428833 Msa0989500:intron 25.0%
! CTCTAAATATAAGTTTCCTT+TGG + chr6_4:46428833-46428852 None:intergenic 25.0%
! AAAGAGATTAAGCATATGTT+TGG - chr6_4:46428892-46428911 Msa0989500:three_prime_UTR 25.0%
!!! TAGTTTTTTAGCTTCTCTTA+CGG + chr6_4:46428961-46428980 None:intergenic 25.0%
! GACAATGCAATATATATGAA+AGG - chr6_4:46429332-46429351 Msa0989500:intron 25.0%
! TGCAATATATATGAAAGGTA+CGG - chr6_4:46429337-46429356 Msa0989500:intron 25.0%
! GTTACATATACTATTGATGA+TGG + chr6_4:46429380-46429399 None:intergenic 25.0%
! GTTACATATACTATTGATGA+TGG + chr6_4:46429380-46429399 None:intergenic 25.0%
! ATCTTAGTACTACATAGTAT+TGG - chr6_4:46429511-46429530 Msa0989500:three_prime_UTR 25.0%
! ATCAAAAGTAACGACATTAT+TGG - chr6_4:46429574-46429593 Msa0989500:intron 25.0%
! CAATGAAAGCAACAATATAT+TGG + chr6_4:46430310-46430329 None:intergenic 25.0%
!!! ATATATTGTTGCTTTCATTG+AGG - chr6_4:46430310-46430329 Msa0989500:intron 25.0%
! TACATGAAATTAGTCACTAA+AGG - chr6_4:46430492-46430511 Msa0989500:intron 25.0%
!!! ATAATGTTTTTGTCAACTAC+TGG - chr6_4:46430673-46430692 Msa0989500:intron 25.0%
! ACCATAAATTTGAATAAAGC+CGG + chr6_4:46430803-46430822 None:intergenic 25.0%
! ATTGTATCAAAGGAATTACT+AGG + chr6_4:46430905-46430924 None:intergenic 25.0%
! TGGTAAAAGAATTGTATCAA+AGG + chr6_4:46430915-46430934 None:intergenic 25.0%
!! TTTGATACAATTCTTTTACC+AGG - chr6_4:46430914-46430933 Msa0989500:CDS 25.0%
!! TTGATACAATTCTTTTACCA+GGG - chr6_4:46430915-46430934 Msa0989500:CDS 25.0%
! CCATCATATATAAGATTAAG+AGG + chr6_4:46430981-46431000 None:intergenic 25.0%
! CCTCTTAATCTTATATATGA+TGG - chr6_4:46430978-46430997 Msa0989500:CDS 25.0%
! TTATGCTAATTAGTTGGATT+AGG + chr6_4:46431087-46431106 None:intergenic 25.0%
! AATCTCAAGCATATTATTCA+TGG + chr6_4:46431207-46431226 None:intergenic 25.0%
! ATAGAAAAAAACCACTAATC+TGG - chr6_4:46431467-46431486 Msa0989500:CDS 25.0%
! TAATGAAGAAAATGTTGAGA+AGG + chr6_4:46431746-46431765 None:intergenic 25.0%
!! TCAACATTTTCTTCATTACT+TGG - chr6_4:46431748-46431767 Msa0989500:five_prime_UTR 25.0%
!!! GTTTTAAACAAGTAAAGGTA+TGG + chr6_4:46431839-46431858 None:intergenic 25.0%
! TAACCTATTGCAGATAAAAT+TGG + chr6_4:46431896-46431915 None:intergenic 25.0%
! TTTATATTGTCTTCCTTTGT+TGG - chr6_4:46431949-46431968 Msa0989500:intron 25.0%
!!! CTTATTTTATATTTGAGCGT+CGG - chr6_4:46432067-46432086 Msa0989500:intron 25.0%
!!! TTATTTTATATTTGAGCGTC+GGG - chr6_4:46432068-46432087 Msa0989500:intron 25.0%
!! TTTTCATGGCATTTATTTGA+TGG + chr6_4:46432305-46432324 None:intergenic 25.0%
! AACAATAGACTAGAAACATT+AGG + chr6_4:46432354-46432373 None:intergenic 25.0%
!!! AATGTATTTTGCTATGCTAT+TGG - chr6_4:46432740-46432759 Msa0989500:intron 25.0%
! AACAAGAAACCATATGATAT+GGG + chr6_4:46432825-46432844 None:intergenic 25.0%
! AAACAAGAAACCATATGATA+TGG + chr6_4:46432826-46432845 None:intergenic 25.0%
! TGATCATTGATGAATAACAA+TGG + chr6_4:46432910-46432929 None:intergenic 25.0%
! AAGACAGCTATAAAACTTTA+CGG + chr6_4:46432974-46432993 None:intergenic 25.0%
!! TAAATGTTATAGCAAGTTGA+TGG - chr6_4:46433167-46433186 Msa0989500:intron 25.0%
! TTATATGGAAATGAGTAGTT+AGG - chr6_4:46433370-46433389 Msa0989500:intron 25.0%
! TATATGGAAATGAGTAGTTA+GGG - chr6_4:46433371-46433390 Msa0989500:intron 25.0%
! GCATGCAAATAAATAATTTG+AGG + chr6_4:46433551-46433570 None:intergenic 25.0%
!!! ACTATGACTTAGTTTTGTTA+TGG - chr6_4:46433674-46433693 Msa0989500:intron 25.0%
!!! CTATGACTTAGTTTTGTTAT+GGG - chr6_4:46433675-46433694 Msa0989500:intron 25.0%
!!! TATGACTTAGTTTTGTTATG+GGG - chr6_4:46433676-46433695 Msa0989500:intron 25.0%
! TTAAGCAATTTGGTTAAATC+AGG + chr6_4:46433732-46433751 None:intergenic 25.0%
! ACAAAATTTCATAACTAGCA+TGG + chr6_4:46433961-46433980 None:intergenic 25.0%
!! TATATGTACATCTGAGATTT+GGG + chr6_4:46434008-46434027 None:intergenic 25.0%
!!! GTTTTTCAGTTTGAATTTCA+TGG + chr6_4:46434082-46434101 None:intergenic 25.0%
GCATTTCTTTCTTCAATTGT+TGG - chr6_4:46427514-46427533 Msa0989500:three_prime_UTR 30.0%
CATTCAATACTCTTCTTATC+TGG + chr6_4:46427756-46427775 None:intergenic 30.0%
! GTATAATGAGTTTTCCTATC+GGG - chr6_4:46428273-46428292 Msa0989500:intron 30.0%
! TATAATGAGTTTTCCTATCG+GGG - chr6_4:46428274-46428293 Msa0989500:intron 30.0%
AAAAGTAACTCGGATGTTAA+AGG - chr6_4:46428366-46428385 Msa0989500:intron 30.0%
AAAGTAACTCGGATGTTAAA+GGG - chr6_4:46428367-46428386 Msa0989500:intron 30.0%
AGATTAAGCATATGTTTGGT+TGG - chr6_4:46428896-46428915 Msa0989500:three_prime_UTR 30.0%
GATTAAGCATATGTTTGGTT+GGG - chr6_4:46428897-46428916 Msa0989500:three_prime_UTR 30.0%
TATATTAGTGTGATCCATTG+TGG - chr6_4:46429189-46429208 Msa0989500:intron 30.0%
! GCAATATATATGAAAGGTAC+GGG - chr6_4:46429338-46429357 Msa0989500:intron 30.0%
! CAATATATATGAAAGGTACG+GGG - chr6_4:46429339-46429358 Msa0989500:intron 30.0%
TATACTCTCTTATGAAGGTT+TGG + chr6_4:46429724-46429743 None:intergenic 30.0%
CAACATATACTCTCTTATGA+AGG + chr6_4:46429729-46429748 None:intergenic 30.0%
CAGTCACATGATTACTTATA+CGG - chr6_4:46429812-46429831 Msa0989500:intron 30.0%
! TTTTCTGCATTACAGTATAG+AGG - chr6_4:46429878-46429897 Msa0989500:three_prime_UTR 30.0%
TTTCTGTGTTGAAGAAGATA+TGG - chr6_4:46429980-46429999 Msa0989500:three_prime_UTR 30.0%
TTGAAGAAGATATGGAAACT+GGG - chr6_4:46429988-46430007 Msa0989500:three_prime_UTR 30.0%
TCATATCCAATGATTCTTCA+TGG - chr6_4:46430039-46430058 Msa0989500:intron 30.0%
GGCTAAATGATATATGACAA+TGG + chr6_4:46430217-46430236 None:intergenic 30.0%
!! CACACAATTTGTTGGTTAAA+TGG + chr6_4:46430275-46430294 None:intergenic 30.0%
AAGTAGAACACACAATTTGT+TGG + chr6_4:46430283-46430302 None:intergenic 30.0%
GAAAGCAACAATATATTGGA+TGG + chr6_4:46430306-46430325 None:intergenic 30.0%
TCATATGAATATGATGCCAT+TGG - chr6_4:46430342-46430361 Msa0989500:intron 30.0%
ATTCAACCTACAGGATTAAA+AGG - chr6_4:46430387-46430406 Msa0989500:intron 30.0%
! TCACTAAAGGCTTTGTATAA+AGG - chr6_4:46430505-46430524 Msa0989500:three_prime_UTR 30.0%
TCATATTCATTTATGGTGAG+TGG - chr6_4:46430565-46430584 Msa0989500:intron 30.0%
TGATATAGAATGTCTGAACT+TGG + chr6_4:46430654-46430673 None:intergenic 30.0%
TAAAGCAAAAGAGAAACACA+TGG - chr6_4:46430707-46430726 Msa0989500:three_prime_UTR 30.0%
TAAATTTGAATAAAGCCGGA+AGG + chr6_4:46430799-46430818 None:intergenic 30.0%
!! TCCGGCTTTATTCAAATTTA+TGG - chr6_4:46430799-46430818 Msa0989500:three_prime_UTR 30.0%
ACAGATTATGCATTTATACC+TGG + chr6_4:46430853-46430872 None:intergenic 30.0%
! TGATACAATTCTTTTACCAG+GGG - chr6_4:46430916-46430935 Msa0989500:CDS 30.0%
AGCTGATTATGCTAATTAGT+TGG + chr6_4:46431093-46431112 None:intergenic 30.0%
!! TCAACGTTTTAACAATAGCA+AGG - chr6_4:46431260-46431279 Msa0989500:intron 30.0%
!! CAACGTTTTAACAATAGCAA+GGG - chr6_4:46431261-46431280 Msa0989500:intron 30.0%
! AAATGCAAAAGCACAGTATT+AGG + chr6_4:46431499-46431518 None:intergenic 30.0%
CAAACAACATCACATGAATA+TGG + chr6_4:46431650-46431669 None:intergenic 30.0%
!! GGATCATTTTGATGTACATT+TGG - chr6_4:46431700-46431719 Msa0989500:five_prime_UTR 30.0%
TCGTACAACATAACTTGATT+TGG - chr6_4:46431865-46431884 Msa0989500:intron 30.0%
! TCTCCAATTTTATCTGCAAT+AGG - chr6_4:46431890-46431909 Msa0989500:intron 30.0%
! TGTTGGTTGACAAATGATAA+TGG - chr6_4:46432478-46432497 Msa0989500:intron 30.0%
GGGATATGTAAGAAAGTTAT+TGG + chr6_4:46432635-46432654 None:intergenic 30.0%
TGGAAAAAACCATAACCATA+TGG + chr6_4:46432699-46432718 None:intergenic 30.0%
!!! TTTCCATTTTGTTTTTGCCA+CGG - chr6_4:46432713-46432732 Msa0989500:intron 30.0%
!! TATTTTGCTATGCTATTGGT+TGG - chr6_4:46432744-46432763 Msa0989500:intron 30.0%
!! TTATTGAGTTTTGTGGTTTC+TGG + chr6_4:46432942-46432961 None:intergenic 30.0%
! ACAACAGTTATTGAGTTTTG+TGG + chr6_4:46432949-46432968 None:intergenic 30.0%
AGACAGCTATAAAACTTTAC+GGG + chr6_4:46432973-46432992 None:intergenic 30.0%
TATCAGCTCATTGAATTACT+TGG + chr6_4:46433032-46433051 None:intergenic 30.0%
!!! TGTTTTTTGGAAAGTCAGAA+AGG - chr6_4:46433337-46433356 Msa0989500:intron 30.0%
!!! GTTTTTTGGAAAGTCAGAAA+GGG - chr6_4:46433338-46433357 Msa0989500:intron 30.0%
AAAGGGATGAATGACTTATA+TGG - chr6_4:46433355-46433374 Msa0989500:intron 30.0%
CAAACAATCATCACTTAATG+CGG + chr6_4:46433586-46433605 None:intergenic 30.0%
AAGTGATGATTGTTTGAATG+TGG - chr6_4:46433590-46433609 Msa0989500:intron 30.0%
! ATATGTACATCTGAGATTTG+GGG + chr6_4:46434007-46434026 None:intergenic 30.0%
! CTATATGTACATCTGAGATT+TGG + chr6_4:46434009-46434028 None:intergenic 30.0%
AATCTCAGATGTACATATAG+TGG - chr6_4:46434009-46434028 Msa0989500:intron 30.0%
TAATCCCTTCATAAAGTGAA+AGG + chr6_4:46434209-46434228 None:intergenic 30.0%
!! AAACGCTTTGTTTGTGCTTT+CGG + chr6_4:46427325-46427344 None:intergenic 35.0%
GAAACAGAGAGAAATTGTTG+GGG + chr6_4:46427348-46427367 None:intergenic 35.0%
GGAAACAGAGAGAAATTGTT+GGG + chr6_4:46427349-46427368 None:intergenic 35.0%
TGGAAACAGAGAGAAATTGT+TGG + chr6_4:46427350-46427369 None:intergenic 35.0%
TGAGAGATCGAAAAAGAGAA+TGG - chr6_4:46427402-46427421 Msa0989500:three_prime_UTR 35.0%
ATCTATTAACGAGTGAACAC+TGG + chr6_4:46427439-46427458 None:intergenic 35.0%
GAATGCAATTGCATAATCGA+CGG - chr6_4:46427771-46427790 Msa0989500:intron 35.0%
AAAAGGAAAAGTTGAGATGG+TGG - chr6_4:46427831-46427850 Msa0989500:intron 35.0%
TACTTCATGTGAGAGAAAGA+GGG + chr6_4:46427946-46427965 None:intergenic 35.0%
!!! TCTCTACTAGCTTTTTCTGA+GGG + chr6_4:46427984-46428003 None:intergenic 35.0%
!!! ATCTCTACTAGCTTTTTCTG+AGG + chr6_4:46427985-46428004 None:intergenic 35.0%
TTCAATGGTAAATGAGACCT+TGG - chr6_4:46428431-46428450 Msa0989500:intron 35.0%
TGCAGAAAGAAAAAAAGCCA+AGG + chr6_4:46428451-46428470 None:intergenic 35.0%
ATATACAAGCGCATGTTTGA+TGG + chr6_4:46428931-46428950 None:intergenic 35.0%
!!! TTTTTAGCTTCTCTTACGGT+GGG + chr6_4:46428957-46428976 None:intergenic 35.0%
!!! TTTTTTAGCTTCTCTTACGG+TGG + chr6_4:46428958-46428977 None:intergenic 35.0%
GAAATATTTGCTTTAGCGGT+GGG + chr6_4:46429026-46429045 None:intergenic 35.0%
TGAAATATTTGCTTTAGCGG+TGG + chr6_4:46429027-46429046 None:intergenic 35.0%
!! ATACTATTGATGATGGTGTC+CGG + chr6_4:46429373-46429392 None:intergenic 35.0%
ATAGAGAAAAATTCGAACCC+CGG - chr6_4:46429412-46429431 Msa0989500:intron 35.0%
!! ATACTATTGATGATGGTGTC+CGG + chr6_4:46429373-46429392 None:intergenic 35.0%
TCTTATGAAGGTTTGGCAAT+CGG + chr6_4:46429717-46429736 None:intergenic 35.0%
GTTGAAGAAGATATGGAAAC+TGG - chr6_4:46429987-46430006 Msa0989500:three_prime_UTR 35.0%
TGAAGAAGATATGGAAACTG+GGG - chr6_4:46429989-46430008 Msa0989500:three_prime_UTR 35.0%
! AAAGCAACAATGGTAATGAG+AGG - chr6_4:46430012-46430031 Msa0989500:intron 35.0%
ACTGAACCATGAAGAATCAT+TGG + chr6_4:46430048-46430067 None:intergenic 35.0%
! TTATGCCTTGATTTTTCTGC+TGG - chr6_4:46430109-46430128 Msa0989500:intron 35.0%
ATTAGCCAGCAGAAAAATCA+AGG + chr6_4:46430117-46430136 None:intergenic 35.0%
TCGTAGTGCTTTAACAGAAA+TGG - chr6_4:46430166-46430185 Msa0989500:intron 35.0%
! TGATTTGCCATAATAAGCGT+GGG + chr6_4:46430250-46430269 None:intergenic 35.0%
! ATGATTTGCCATAATAAGCG+TGG + chr6_4:46430251-46430270 None:intergenic 35.0%
! TTGCATCCTTTTAATCCTGT+AGG + chr6_4:46430396-46430415 None:intergenic 35.0%
TACAGGATTAAAAGGATGCA+AGG - chr6_4:46430395-46430414 Msa0989500:intron 35.0%
ACAGGATTAAAAGGATGCAA+GGG - chr6_4:46430396-46430415 Msa0989500:intron 35.0%
GAATGTCTGAACTTGGATTA+AGG + chr6_4:46430647-46430666 None:intergenic 35.0%
!!! ATCCCATTTTTTCTACCTTC+CGG - chr6_4:46430781-46430800 Msa0989500:three_prime_UTR 35.0%
GATTATGCATTTATACCTGG+AGG + chr6_4:46430850-46430869 None:intergenic 35.0%
GGTAAAAGTAAGACTATACC+CGG + chr6_4:46430960-46430979 None:intergenic 35.0%
! TGCTAATTAGTTGGATTAGG+AGG + chr6_4:46431084-46431103 None:intergenic 35.0%
!! CACGTTGGTAAGATTTTCTT+CGG - chr6_4:46431158-46431177 Msa0989500:intron 35.0%
TTCTTCGGTTAGAGAAAAAC+AGG - chr6_4:46431173-46431192 Msa0989500:intron 35.0%
!! AAAAGTACTCTAGAGTGTAG+AGG - chr6_4:46431384-46431403 Msa0989500:intron 35.0%
!! AAAGTACTCTAGAGTGTAGA+GGG - chr6_4:46431385-46431404 Msa0989500:intron 35.0%
AACACTGATCAGACAACAAT+TGG + chr6_4:46431417-46431436 None:intergenic 35.0%
!! TTAGGTTGATACCAGATTAG+TGG + chr6_4:46431481-46431500 None:intergenic 35.0%
CAAAGCTTTACAGGTAGAAT+AGG + chr6_4:46431525-46431544 None:intergenic 35.0%
! TCTACCTGTAAAGCTTTGAT+AGG - chr6_4:46431527-46431546 Msa0989500:CDS 35.0%
TATGCCTATCAAAGCTTTAC+AGG + chr6_4:46431534-46431553 None:intergenic 35.0%
ATCACATGAATATGGCTGTA+TGG + chr6_4:46431642-46431661 None:intergenic 35.0%
AAAATGTTGAGAAGGCAAGA+AGG + chr6_4:46431738-46431757 None:intergenic 35.0%
CACAGATAGAACATACTTTC+GGG + chr6_4:46431815-46431834 None:intergenic 35.0%
CCACAGATAGAACATACTTT+CGG + chr6_4:46431816-46431835 None:intergenic 35.0%
TATCTGCAATAGGTTAATGC+TGG - chr6_4:46431900-46431919 Msa0989500:intron 35.0%
CAAAACTGTTCAGCAAAAGT+TGG + chr6_4:46431998-46432017 None:intergenic 35.0%
TTTGTGAGCTCATAACTATC+AGG + chr6_4:46432230-46432249 None:intergenic 35.0%
! GGAATAAGTAGCAGTTTTCA+TGG + chr6_4:46432319-46432338 None:intergenic 35.0%
!! CAAATGATAATGGCTGTTGT+TGG - chr6_4:46432488-46432507 Msa0989500:intron 35.0%
! GTTATTGCGACATTTTCAAC+AGG - chr6_4:46432541-46432560 Msa0989500:intron 35.0%
ATTCAGAGTTTATGCTAACC+TGG + chr6_4:46432585-46432604 None:intergenic 35.0%
GATGATGTACCATATGGTTA+TGG - chr6_4:46432687-46432706 Msa0989500:intron 35.0%
!!! TTCCATTTTGTTTTTGCCAC+GGG - chr6_4:46432714-46432733 Msa0989500:intron 35.0%
ATATCCTACTCTCCTGTATT+TGG - chr6_4:46432799-46432818 Msa0989500:intron 35.0%
ATATGATATGGGCCAAATAC+AGG + chr6_4:46432814-46432833 None:intergenic 35.0%
TGTATTTGGCCCATATCATA+TGG - chr6_4:46432813-46432832 Msa0989500:intron 35.0%
! AGAAGTACAGAGTAAGAAAC+AGG - chr6_4:46432864-46432883 Msa0989500:intron 35.0%
GAAGTACAGAGTAAGAAACA+GGG - chr6_4:46432865-46432884 Msa0989500:intron 35.0%
AAGTACAGAGTAAGAAACAG+GGG - chr6_4:46432866-46432885 Msa0989500:intron 35.0%
TTCATTTACTATTCTGACCC+AGG + chr6_4:46433243-46433262 None:intergenic 35.0%
GGGTCAGAATAGTAAATGAA+TGG - chr6_4:46433243-46433262 Msa0989500:intron 35.0%
CAGAATAGTAAATGAATGGC+TGG - chr6_4:46433247-46433266 Msa0989500:intron 35.0%
ACATCAAACTCAAGCAAGTA+AGG + chr6_4:46433487-46433506 None:intergenic 35.0%
TTGATGTTATGCACTTCCAT+AGG - chr6_4:46433500-46433519 Msa0989500:intron 35.0%
TGATGTTATGCACTTCCATA+GGG - chr6_4:46433501-46433520 Msa0989500:intron 35.0%
AAATCATCATCACTACCCTA+TGG + chr6_4:46433519-46433538 None:intergenic 35.0%
! AGGGTAGTGATGATGATTTA+TGG - chr6_4:46433520-46433539 Msa0989500:intron 35.0%
GTAGTGAATGTCAGAATTAG+TGG - chr6_4:46433698-46433717 Msa0989500:intron 35.0%
!!! TTTTTTCCTATCTTCAGAGC+TGG + chr6_4:46434041-46434060 None:intergenic 35.0%
AAGGACTGTATATCTTCATG+CGG + chr6_4:46434190-46434209 None:intergenic 35.0%
ACAGTCCTTTCACTTTATGA+AGG - chr6_4:46434201-46434220 Msa0989500:five_prime_UTR 35.0%
CAGTCCTTTCACTTTATGAA+GGG - chr6_4:46434202-46434221 Msa0989500:five_prime_UTR 35.0%
GAGAAAGACGAAGAAGATGA+AGG + chr6_4:46427482-46427501 None:intergenic 40.0%
TCATCTTCTTCGTCTTTCTC+AGG - chr6_4:46427482-46427501 Msa0989500:three_prime_UTR 40.0%
!! GGTTGGTTACTTTGGAGTAA+AGG - chr6_4:46427852-46427871 Msa0989500:intron 40.0%
CTACTTCATGTGAGAGAAAG+AGG + chr6_4:46427947-46427966 None:intergenic 40.0%
!! TTTTCTGAGGGGAAATTTGC+AGG + chr6_4:46427972-46427991 None:intergenic 40.0%
!!! CTCTACTAGCTTTTTCTGAG+GGG + chr6_4:46427983-46428002 None:intergenic 40.0%
TAAGCAAGCATTCATCGTTG+AGG - chr6_4:46428013-46428032 Msa0989500:intron 40.0%
CTAGCAGCAAATTGTGTTGT+TGG - chr6_4:46428114-46428133 Msa0989500:intron 40.0%
TATGCAAATTTGTCCCCGAT+AGG + chr6_4:46428290-46428309 None:intergenic 40.0%
! GTGGACCCAATGATTTTCAA+TGG - chr6_4:46428416-46428435 Msa0989500:three_prime_UTR 40.0%
!! TACTATTGATGATGGTGTCC+GGG + chr6_4:46429372-46429391 None:intergenic 40.0%
!! TACTATTGATGATGGTGTCC+GGG + chr6_4:46429372-46429391 None:intergenic 40.0%
TTATGAAGGTTTGGCAATCG+GGG + chr6_4:46429715-46429734 None:intergenic 40.0%
CTTATGAAGGTTTGGCAATC+GGG + chr6_4:46429716-46429735 None:intergenic 40.0%
AAGAGTCTGTCATCTGTCAT+GGG + chr6_4:46429860-46429879 None:intergenic 40.0%
AAAGAGTCTGTCATCTGTCA+TGG + chr6_4:46429861-46429880 None:intergenic 40.0%
CTACGCAGTACATGAATGAA+TGG + chr6_4:46429958-46429977 None:intergenic 40.0%
TCCAAGGATTGGATGCATTT+CGG + chr6_4:46430076-46430095 None:intergenic 40.0%
AAATGCATCCAATCCTTGGA+TGG - chr6_4:46430076-46430095 Msa0989500:intron 40.0%
ATATCTTGCCATCCAAGGAT+TGG + chr6_4:46430087-46430106 None:intergenic 40.0%
TAAGCATATCTTGCCATCCA+AGG + chr6_4:46430092-46430111 None:intergenic 40.0%
!! TTTTCTGCTGGCTAATCTGT+TGG - chr6_4:46430121-46430140 Msa0989500:intron 40.0%
AAGGGTGGAAAAGACTGTTT+GGG - chr6_4:46430414-46430433 Msa0989500:intron 40.0%
! GGTTAGTCAAGATTGCTTTG+TGG - chr6_4:46430743-46430762 Msa0989500:three_prime_UTR 40.0%
AGCCGGAAGGTAGAAAAAAT+GGG + chr6_4:46430786-46430805 None:intergenic 40.0%
AAGCCGGAAGGTAGAAAAAA+TGG + chr6_4:46430787-46430806 None:intergenic 40.0%
TTATCTTTCAACAAGCCTCC+AGG - chr6_4:46430832-46430851 Msa0989500:CDS 40.0%
! TACAATTCTTTTACCAGGGG+AGG - chr6_4:46430919-46430938 Msa0989500:CDS 40.0%
! TGTTCCTGTCATTCCTTTTC+AGG - chr6_4:46431053-46431072 Msa0989500:intron 40.0%
! GTTCCTGTCATTCCTTTTCA+GGG - chr6_4:46431054-46431073 Msa0989500:intron 40.0%
AAACCCTGAAAAGGAATGAC+AGG + chr6_4:46431060-46431079 None:intergenic 40.0%
TTAGGAGGAAAACCCTGAAA+AGG + chr6_4:46431069-46431088 None:intergenic 40.0%
GCATAATCAGCTTCATCACA+TGG - chr6_4:46431101-46431120 Msa0989500:intron 40.0%
CTGAAAAATATGCAGCACGT+TGG - chr6_4:46431143-46431162 Msa0989500:intron 40.0%
!! AAGTACTCTAGAGTGTAGAG+GGG - chr6_4:46431386-46431405 Msa0989500:intron 40.0%
! CCGAAAGTATGTTCTATCTG+TGG - chr6_4:46431813-46431832 Msa0989500:intron 40.0%
AATGCTGGTATTCTAACTCC+AGG - chr6_4:46431915-46431934 Msa0989500:intron 40.0%
ATGCTGGTATTCTAACTCCA+GGG - chr6_4:46431916-46431935 Msa0989500:intron 40.0%
! ATGCTTAGCCAGTCTGTTTT+GGG + chr6_4:46432153-46432172 None:intergenic 40.0%
TGGATACACGTATGTGACAA+TGG + chr6_4:46432285-46432304 None:intergenic 40.0%
CATAGATTCCAAATGCTTCC+AGG - chr6_4:46432564-46432583 Msa0989500:intron 40.0%
!! TATGCTAACCTGGAAGCATT+TGG + chr6_4:46432575-46432594 None:intergenic 40.0%
! TTGCTATGCTATTGGTTGGA+TGG - chr6_4:46432748-46432767 Msa0989500:intron 40.0%
TTGCATGACAGAATATCAGC+TGG - chr6_4:46432996-46433015 Msa0989500:intron 40.0%
CATTGAATTACTTGGCGTCA+GGG + chr6_4:46433024-46433043 None:intergenic 40.0%
TCATTGAATTACTTGGCGTC+AGG + chr6_4:46433025-46433044 None:intergenic 40.0%
TTCTCACTTGTAGTGTTCGT+TGG - chr6_4:46433112-46433131 Msa0989500:intron 40.0%
TGCAGATGGACAATTGATGT+GGG - chr6_4:46433206-46433225 Msa0989500:intron 40.0%
AGGGATTTGATGAACGTGAT+TGG - chr6_4:46433390-46433409 Msa0989500:intron 40.0%
ATATCGCCATTGACCATTGT+AGG - chr6_4:46433448-46433467 Msa0989500:intron 40.0%
TTTAACCATCGCTCCTACAA+TGG + chr6_4:46433464-46433483 None:intergenic 40.0%
TGCTGATAGCTCCAATGATA+TGG - chr6_4:46433893-46433912 Msa0989500:intron 40.0%
TGTCTGCACTTCCATATCAT+TGG + chr6_4:46433907-46433926 None:intergenic 40.0%
! ATATGGAAGTGCAGACAAGT+TGG - chr6_4:46433910-46433929 Msa0989500:intron 40.0%
GATTGTTCTTTAGTGTGCAC+TGG - chr6_4:46434103-46434122 Msa0989500:intron 40.0%
CTGGACAGAATCAATGTTTC+TGG - chr6_4:46434122-46434141 Msa0989500:intron 40.0%
TGACACATGTACAGGTAAGA+GGG + chr6_4:46434245-46434264 None:intergenic 40.0%
TTTCTCAGTGACACATGTAC+AGG + chr6_4:46434253-46434272 None:intergenic 40.0%
TTAACGAGTGAACACTGGAG+CGG + chr6_4:46427434-46427453 None:intergenic 45.0%
GAAGAAGATGAAGGCAATGG+TGG + chr6_4:46427473-46427492 None:intergenic 45.0%
GACGAAGAAGATGAAGGCAA+TGG + chr6_4:46427476-46427495 None:intergenic 45.0%
! GGAAAAGTTGAGATGGTGGT+TGG - chr6_4:46427835-46427854 Msa0989500:intron 45.0%
! GAGATGGTGGTTGGTTACTT+TGG - chr6_4:46427844-46427863 Msa0989500:intron 45.0%
CACAATAAACGAGGAATCCG+TGG - chr6_4:46428675-46428694 Msa0989500:intron 45.0%
ATTGATCGGAGTTCGAACCA+CGG + chr6_4:46428695-46428714 None:intergenic 45.0%
ACTAAGCTTCTTCTCCAACG+TGG - chr6_4:46428977-46428996 Msa0989500:three_prime_UTR 45.0%
CTAAGCTTCTTCTCCAACGT+GGG - chr6_4:46428978-46428997 Msa0989500:three_prime_UTR 45.0%
ACTGTCGAGCTTAGCTAAGT+TGG - chr6_4:46429305-46429324 Msa0989500:intron 45.0%
!! ACTATTGATGATGGTGTCCG+GGG + chr6_4:46429371-46429390 None:intergenic 45.0%
!! ACTATTGATGATGGTGTCCG+GGG + chr6_4:46429371-46429390 None:intergenic 45.0%
GAAACTGGGGAAAGCAACAA+TGG - chr6_4:46430002-46430021 Msa0989500:intron 45.0%
TCCGAAATGCATCCAATCCT+TGG - chr6_4:46430072-46430091 Msa0989500:intron 45.0%
TTGCAGTCCCACGCTTATTA+TGG - chr6_4:46430240-46430259 Msa0989500:intron 45.0%
GGATTAAAAGGATGCAAGGG+TGG - chr6_4:46430399-46430418 Msa0989500:intron 45.0%
CAAGGGTGGAAAAGACTGTT+TGG - chr6_4:46430413-46430432 Msa0989500:intron 45.0%
AGGGTGGAAAAGACTGTTTG+GGG - chr6_4:46430415-46430434 Msa0989500:intron 45.0%
AAGAGAAACACATGGCACTC+TGG - chr6_4:46430715-46430734 Msa0989500:three_prime_UTR 45.0%
! AATTCTTTTACCAGGGGAGG+TGG - chr6_4:46430922-46430941 Msa0989500:CDS 45.0%
CACCAAACAGACGACATATG+CGG + chr6_4:46431679-46431698 None:intergenic 45.0%
GCATATGTCGTCTGTTTGGT+GGG - chr6_4:46431678-46431697 Msa0989500:five_prime_UTR 45.0%
! CATATGTCGTCTGTTTGGTG+GGG - chr6_4:46431679-46431698 Msa0989500:five_prime_UTR 45.0%
TATTCTAACTCCAGGGCTGA+TGG - chr6_4:46431923-46431942 Msa0989500:intron 45.0%
ATTCTAACTCCAGGGCTGAT+GGG - chr6_4:46431924-46431943 Msa0989500:intron 45.0%
TTCTAATGGCGCACCAACAA+AGG + chr6_4:46431965-46431984 None:intergenic 45.0%
TTTGTTGGTGCGCCATTAGA+AGG - chr6_4:46431964-46431983 Msa0989500:intron 45.0%
TTGGCAAACCTGCCTTCTAA+TGG + chr6_4:46431979-46431998 None:intergenic 45.0%
TTTGTATGCAGTGAACCTGC+TGG - chr6_4:46432096-46432115 Msa0989500:intron 45.0%
! GATGCTTAGCCAGTCTGTTT+TGG + chr6_4:46432154-46432173 None:intergenic 45.0%
CTTACATATCCCTGCAGTTC+CGG - chr6_4:46432643-46432662 Msa0989500:intron 45.0%
TATGGTACATCATCCTCTGC+TGG + chr6_4:46432681-46432700 None:intergenic 45.0%
GCAGAGGATGATGTACCATA+TGG - chr6_4:46432681-46432700 Msa0989500:intron 45.0%
CTCCCGTGGCAAAAACAAAA+TGG + chr6_4:46432719-46432738 None:intergenic 45.0%
AGCAAAATACATTGCTCCCG+TGG + chr6_4:46432733-46432752 None:intergenic 45.0%
TGCCTTCATTCTTCTGCAGA+TGG - chr6_4:46433192-46433211 Msa0989500:intron 45.0%
GTCCATCTGCAGAAGAATGA+AGG + chr6_4:46433197-46433216 None:intergenic 45.0%
CTGCAGATGGACAATTGATG+TGG - chr6_4:46433205-46433224 Msa0989500:intron 45.0%
GCAGATGGACAATTGATGTG+GGG - chr6_4:46433207-46433226 Msa0989500:intron 45.0%
ACGCGAGACATATGAGACAT+GGG + chr6_4:46433421-46433440 None:intergenic 45.0%
ATCGCTCCTACAATGGTCAA+TGG + chr6_4:46433457-46433476 None:intergenic 45.0%
ATTGACCATTGTAGGAGCGA+TGG - chr6_4:46433456-46433475 Msa0989500:intron 45.0%
TTTCCTATCTTCAGAGCTGG+AGG + chr6_4:46434038-46434057 None:intergenic 45.0%
! TGCACGCATACTGGTTGAAT+TGG - chr6_4:46434151-46434170 Msa0989500:intron 45.0%
GTGACACATGTACAGGTAAG+AGG + chr6_4:46434246-46434265 None:intergenic 45.0%
!!! ATTTATTTTAATACTAATAT+AGG + chr6_4:46428186-46428205 None:intergenic 5.0%
!! ATATTTATTAAGTAATTTAA+TGG - chr6_4:46428643-46428662 Msa0989500:intron 5.0%
!! AATATAAAATAAGTAAAAAA+TGG + chr6_4:46432060-46432079 None:intergenic 5.0%
TGAAGCTCGAGGGTCATTGA+TGG + chr6_4:46428394-46428413 None:intergenic 50.0%
TCAATGACCCTCGAGCTTCA+AGG - chr6_4:46428394-46428413 Msa0989500:three_prime_UTR 50.0%
! TCCAACGTGGGTTTTTGTCG+CGG - chr6_4:46428990-46429009 Msa0989500:intron 50.0%
! CGAGCTTAGCTAAGTTGGCA+AGG - chr6_4:46429310-46429329 Msa0989500:intron 50.0%
! TGCTGGCTAATCTGTTGGCA+TGG - chr6_4:46430126-46430145 Msa0989500:intron 50.0%
GCTGGCTAATCTGTTGGCAT+GGG - chr6_4:46430127-46430146 Msa0989500:intron 50.0%
ATAAGCGTGGGACTGCAAGA+AGG + chr6_4:46430238-46430257 None:intergenic 50.0%
GGGTGGAAAAGACTGTTTGG+GGG - chr6_4:46430416-46430435 Msa0989500:intron 50.0%
AAAGACTGTTTGGGGGCTGA+AGG - chr6_4:46430423-46430442 Msa0989500:intron 50.0%
GAAACACATGGCACTCTGGA+TGG - chr6_4:46430719-46430738 Msa0989500:three_prime_UTR 50.0%
GACCGCATATGTCGTCTGTT+TGG - chr6_4:46431674-46431693 Msa0989500:five_prime_UTR 50.0%
CGCATATGTCGTCTGTTTGG+TGG - chr6_4:46431677-46431696 Msa0989500:five_prime_UTR 50.0%
TTGAGAAGGCAAGAAGGCTC+TGG + chr6_4:46431732-46431751 None:intergenic 50.0%
TTCTAACTCCAGGGCTGATG+GGG - chr6_4:46431925-46431944 Msa0989500:intron 50.0%
ATATAAAGCCCCATCAGCCC+TGG + chr6_4:46431936-46431955 None:intergenic 50.0%
! CTGATGCAGTTTTCTCCAGC+AGG + chr6_4:46432114-46432133 None:intergenic 50.0%
CTGCTGGAGAAAACTGCATC+AGG - chr6_4:46432112-46432131 Msa0989500:intron 50.0%
ACTCTGCACCCAAAACAGAC+TGG - chr6_4:46432142-46432161 Msa0989500:intron 50.0%
ATCATCCTTCCGGAACTGCA+GGG + chr6_4:46432655-46432674 None:intergenic 50.0%
TATCATCCTTCCGGAACTGC+AGG + chr6_4:46432656-46432675 None:intergenic 50.0%
CTGCTGGTGTATCATCCTTC+CGG + chr6_4:46432665-46432684 None:intergenic 50.0%
GAAGGATGATACACCAGCAG+AGG - chr6_4:46432665-46432684 Msa0989500:intron 50.0%
TGGGCCAAATACAGGAGAGT+AGG + chr6_4:46432806-46432825 None:intergenic 50.0%
TTTGTGGCACTGCTGAGTGA+TGG + chr6_4:46433061-46433080 None:intergenic 50.0%
GATGGACAATTGATGTGGGG+TGG - chr6_4:46433210-46433229 Msa0989500:intron 50.0%
TACTATTCTGACCCAGGTGC+TGG + chr6_4:46433237-46433256 None:intergenic 50.0%
CACGCGAGACATATGAGACA+TGG + chr6_4:46433422-46433441 None:intergenic 50.0%
!! ACTCCTCCAGCTCTGAAGAT+AGG - chr6_4:46434032-46434051 Msa0989500:intron 50.0%
TGGCACAAATGCACGCATAC+TGG - chr6_4:46434142-46434161 Msa0989500:intron 50.0%
ATGACCCTCGAGCTTCAAGG+TGG - chr6_4:46428397-46428416 Msa0989500:three_prime_UTR 55.0%
TCCGCGACAAAAACCCACGT+TGG + chr6_4:46428994-46429013 None:intergenic 55.0%
! AGGCGTTTTGCGTGTGAGCT+TGG - chr6_4:46430443-46430462 Msa0989500:intron 55.0%
! GGCGTTTTGCGTGTGAGCTT+GGG - chr6_4:46430444-46430463 Msa0989500:intron 55.0%
ACACATGGCACTCTGGATGG+TGG - chr6_4:46430722-46430741 Msa0989500:three_prime_UTR 55.0%
GAGACACGCTGGTCATGAGT+TGG + chr6_4:46431788-46431807 None:intergenic 55.0%
TTGGTGCGCCATTAGAAGGC+AGG - chr6_4:46431968-46431987 Msa0989500:intron 55.0%
CATATCCCTGCAGTTCCGGA+AGG - chr6_4:46432647-46432666 Msa0989500:intron 55.0%
GGGTCCACCTTGAAGCTCGA+GGG + chr6_4:46428404-46428423 None:intergenic 60.0%
TGGGTCCACCTTGAAGCTCG+AGG + chr6_4:46428405-46428424 None:intergenic 60.0%
AAGGTACGGGGTTCGAACCC+CGG - chr6_4:46429351-46429370 Msa0989500:intron 60.0%
! GCATGGGCTGCTCGTGACTA+TGG - chr6_4:46430143-46430162 Msa0989500:intron 60.0%
!! GAGGTGGCGCATTTTGGTGC+CGG - chr6_4:46430938-46430957 Msa0989500:CDS 60.0%
!!! AGGTGGCGCATTTTGGTGCC+GGG - chr6_4:46430939-46430958 Msa0989500:CDS 60.0%
! TTTCGGGTGCAGAGACACGC+TGG + chr6_4:46431799-46431818 None:intergenic 60.0%
CGAGTGAACACTGGAGCGGC+TGG + chr6_4:46427430-46427449 None:intergenic 65.0%
CCAAAATGCGCCACCTCCCC+TGG + chr6_4:46430935-46430954 None:intergenic 65.0%
! CCAGGGGAGGTGGCGCATTT+TGG - chr6_4:46430932-46430951 Msa0989500:CDS 65.0%
ATGTGGGGTGGACCAGCACC+TGG - chr6_4:46433222-46433241 Msa0989500:intron 65.0%
TGTGGGGTGGACCAGCACCT+GGG - chr6_4:46433223-46433242 Msa0989500:intron 65.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 46427290 46434368 46427290 ID=Msa0989500;Name=Msa0989500
chr6_4 mRNA 46427290 46434368 46427290 ID=Msa0989500-mRNA-1;Parent=Msa0989500;Name=Msa0989500-mRNA-1;_AED=0.11;_eAED=0.11;_QI=346|1|1|1|0.27|0.25|12|1300|144
chr6_4 exon 46427290 46427771 46427290 ID=Msa0989500-mRNA-1:exon:10467;Parent=Msa0989500-mRNA-1
chr6_4 exon 46428374 46428447 46428374 ID=Msa0989500-mRNA-1:exon:10466;Parent=Msa0989500-mRNA-1
chr6_4 exon 46428865 46428998 46428865 ID=Msa0989500-mRNA-1:exon:10465;Parent=Msa0989500-mRNA-1
chr6_4 exon 46429073 46429144 46429073 ID=Msa0989500-mRNA-1:exon:10464;Parent=Msa0989500-mRNA-1
chr6_4 exon 46429482 46429551 46429482 ID=Msa0989500-mRNA-1:exon:10463;Parent=Msa0989500-mRNA-1
chr6_4 exon 46429673 46429746 46429673 ID=Msa0989500-mRNA-1:exon:10462;Parent=Msa0989500-mRNA-1
chr6_4 exon 46429840 46430011 46429840 ID=Msa0989500-mRNA-1:exon:10461;Parent=Msa0989500-mRNA-1
chr6_4 exon 46430494 46430583 46430494 ID=Msa0989500-mRNA-1:exon:10460;Parent=Msa0989500-mRNA-1
chr6_4 exon 46430698 46430997 46430698 ID=Msa0989500-mRNA-1:exon:10459;Parent=Msa0989500-mRNA-1
chr6_4 exon 46431185 46431258 46431185 ID=Msa0989500-mRNA-1:exon:10458;Parent=Msa0989500-mRNA-1
chr6_4 exon 46431467 46431791 46431467 ID=Msa0989500-mRNA-1:exon:10457;Parent=Msa0989500-mRNA-1
chr6_4 exon 46434155 46434368 46434155 ID=Msa0989500-mRNA-1:exon:10456;Parent=Msa0989500-mRNA-1
chr6_4 five_prime_UTR 46434155 46434368 46434155 ID=Msa0989500-mRNA-1:five_prime_utr;Parent=Msa0989500-mRNA-1
chr6_4 five_prime_UTR 46431660 46431791 46431660 ID=Msa0989500-mRNA-1:five_prime_utr;Parent=Msa0989500-mRNA-1
chr6_4 CDS 46431467 46431659 46431467 ID=Msa0989500-mRNA-1:cds;Parent=Msa0989500-mRNA-1
chr6_4 CDS 46431185 46431258 46431185 ID=Msa0989500-mRNA-1:cds;Parent=Msa0989500-mRNA-1
chr6_4 CDS 46430830 46430997 46430830 ID=Msa0989500-mRNA-1:cds;Parent=Msa0989500-mRNA-1
chr6_4 three_prime_UTR 46430698 46430829 46430698 ID=Msa0989500-mRNA-1:three_prime_utr;Parent=Msa0989500-mRNA-1
chr6_4 three_prime_UTR 46430494 46430583 46430494 ID=Msa0989500-mRNA-1:three_prime_utr;Parent=Msa0989500-mRNA-1
chr6_4 three_prime_UTR 46429840 46430011 46429840 ID=Msa0989500-mRNA-1:three_prime_utr;Parent=Msa0989500-mRNA-1
chr6_4 three_prime_UTR 46429673 46429746 46429673 ID=Msa0989500-mRNA-1:three_prime_utr;Parent=Msa0989500-mRNA-1
chr6_4 three_prime_UTR 46429482 46429551 46429482 ID=Msa0989500-mRNA-1:three_prime_utr;Parent=Msa0989500-mRNA-1
chr6_4 three_prime_UTR 46429073 46429144 46429073 ID=Msa0989500-mRNA-1:three_prime_utr;Parent=Msa0989500-mRNA-1
chr6_4 three_prime_UTR 46428865 46428998 46428865 ID=Msa0989500-mRNA-1:three_prime_utr;Parent=Msa0989500-mRNA-1
chr6_4 three_prime_UTR 46428374 46428447 46428374 ID=Msa0989500-mRNA-1:three_prime_utr;Parent=Msa0989500-mRNA-1
chr6_4 three_prime_UTR 46427290 46427771 46427290 ID=Msa0989500-mRNA-1:three_prime_utr;Parent=Msa0989500-mRNA-1
Gene Sequence

>Msa0989500

ATGGAAACTGGGGAAAGCAACAATGGTAATGAGAGGTGTATCATATCCAATGATTCTTCATGGTTCAGTCAATTCCGAAATGCATCCAATCCTTGGATGGCAAGATATGCTTATGCCTTGATTTTTCTGCTGGCTAATCTGTTGGCATGGGCTGCTCGTGACTATGGTCGTAGTGCTTTAACAGAAATGGAGAGATTAAAAGGATGCAAGGGTGGAAAAGACTGTTTGGGGGCTGAAGGCGTTTTGCGTGTGAGCTTGGGTTGCTTTACATTCTATATCATAATGTTTTTGTCAACTACTGGCACTTCTAAACTAAAGCAAAAGAGAAACACATGGCACTCTGGATGGTGGTTAGTCAAGATTGCTTTGTGGATCGTCATGACTGTCATCCCATTTTTTCTACCTTCCGGCTTTATTCAAATTTATGGTCAGTAA
Protein sequence

>Msa0989500

METGESNNGNERCIISNDSSWFSQFRNASNPWMARYAYALIFLLANLLAWAARDYGRSALTEMERLKGCKGGKDCLGAEGVLRVSLGCFTFYIIMFLSTTGTSKLKQKRNTWHSGWWLVKIALWIVMTVIPFFLPSGFIQIYGQ*