AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0576490

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0576490 MtrunA17_Chr8g0390521 96.573 496 17 0 36 531 1 496 0.0 963
Msa0576490 MtrunA17_Chr6g0485661 64.444 495 162 4 15 498 11 502 0.0 634
Msa0576490 MtrunA17_Chr4g0034681 49.020 510 249 4 33 531 8 517 1.15e-169 491
Msa0576490 MtrunA17_Chr8g0373531 51.129 487 228 4 38 514 4 490 3.13e-166 481
Msa0576490 MtrunA17_Chr3g0144361 50.615 488 226 3 29 506 9 491 1.18e-164 478
Msa0576490 MtrunA17_Chr5g0432581 47.773 494 248 4 36 519 2 495 9.04e-161 468
Msa0576490 MtrunA17_Chr4g0036021 50.321 467 225 2 47 506 21 487 1.01e-160 468
Msa0576490 MtrunA17_Chr2g0282031 47.881 472 235 4 50 521 50 510 1.21e-155 455
Msa0576490 MtrunA17_Chr4g0021771 44.024 502 264 5 26 521 22 512 1.08e-154 453
Msa0576490 MtrunA17_Chr5g0403831 41.165 515 280 5 30 525 1 511 5.21e-127 382
Msa0576490 MtrunA17_Chr4g0039651 32.909 471 270 10 58 504 50 498 4.96e-67 225
Msa0576490 MtrunA17_Chr4g0032021 31.992 472 284 12 54 504 97 552 6.56e-62 213
Msa0576490 MtrunA17_Chr1g0213611 30.882 476 308 6 42 508 67 530 1.71e-61 212
Msa0576490 MtrunA17_Chr5g0417611 29.283 502 317 10 31 506 1 490 3.94e-61 210
Msa0576490 MtrunA17_Chr7g0214451 30.992 484 311 7 50 524 30 499 4.70e-60 207
Msa0576490 MtrunA17_Chr1g0213631 31.818 462 288 8 72 521 4 450 2.98e-59 204
Msa0576490 MtrunA17_Chr5g0394341 27.953 508 314 10 48 518 17 509 6.60e-58 201
Msa0576490 MtrunA17_Chr3g0115781 26.706 513 332 9 36 516 8 508 8.19e-57 198
Msa0576490 MtrunA17_Chr6g0457781 31.685 445 280 10 63 503 115 539 9.17e-57 199
Msa0576490 MtrunA17_Chr7g0250881 31.166 446 275 9 66 503 78 499 1.43e-56 197
Msa0576490 MtrunA17_Chr8g0390261 27.308 509 319 11 48 522 21 512 2.11e-56 197
Msa0576490 MtrunA17_Chr5g0420841 27.778 522 325 12 33 518 4 509 2.48e-56 197
Msa0576490 MtrunA17_Chr3g0078991 28.425 489 318 8 42 508 12 490 3.56e-56 197
Msa0576490 MtrunA17_Chr4g0065311 27.869 488 316 9 41 506 9 482 6.30e-56 196
Msa0576490 MtrunA17_Chr3g0078971 26.747 501 328 10 33 509 5 490 1.84e-55 194
Msa0576490 MtrunA17_Chr6g0486681 27.022 507 326 10 48 527 21 510 2.89e-55 194
Msa0576490 MtrunA17_Chr6g0486671 27.022 507 326 10 48 527 21 510 2.89e-55 194
Msa0576490 MtrunA17_Chr3g0115721 27.888 502 314 10 48 515 18 505 4.22e-55 194
Msa0576490 MtrunA17_Chr3g0115711 27.290 513 315 12 31 509 1 489 1.43e-53 189
Msa0576490 MtrunA17_Chr3g0085971 28.306 484 304 11 51 506 20 488 1.87e-53 189
Msa0576490 MtrunA17_Chr3g0128081 27.168 519 327 13 37 519 8 511 2.09e-53 189
Msa0576490 MtrunA17_Chr3g0128171 28.640 419 280 7 94 506 37 442 6.78e-53 186
Msa0576490 MtrunA17_Chr1g0205681 27.565 497 301 11 48 508 18 491 7.73e-53 187
Msa0576490 MtrunA17_Chr4g0065324 26.923 494 317 10 38 505 14 489 1.61e-52 187
Msa0576490 MtrunA17_Chr3g0115741 27.071 495 317 9 54 516 27 509 2.28e-52 186
Msa0576490 MtrunA17_Chr8g0390141 29.060 468 288 10 66 506 39 489 4.30e-52 186
Msa0576490 MtrunA17_Chr2g0303731 36.257 342 199 7 50 383 23 353 6.95e-52 186
Msa0576490 MtrunA17_Chr2g0303731 35.043 117 71 2 416 528 463 578 8.70e-11 64.7
Msa0576490 MtrunA17_Chr5g0445601 28.340 494 307 11 38 502 9 484 2.67e-51 183
Msa0576490 MtrunA17_Chr1g0205671 28.921 491 288 12 48 502 18 483 4.85e-51 182
Msa0576490 MtrunA17_Chr1g0205691 29.109 505 299 12 60 521 29 517 2.09e-50 181
Msa0576490 MtrunA17_Chr7g0257631 27.677 495 311 11 41 506 46 522 2.27e-49 179
Msa0576490 MtrunA17_Chr3g0078791 28.029 421 264 8 94 508 29 416 3.55e-49 176
Msa0576490 MtrunA17_Chr3g0115751 27.824 478 306 10 54 506 29 492 3.83e-49 177
Msa0576490 MtrunA17_Chr1g0155221 28.571 462 294 10 56 506 52 488 2.27e-48 175
Msa0576490 MtrunA17_Chr8g0373181 28.908 467 297 10 47 503 41 482 1.24e-47 173
Msa0576490 MtrunA17_Chr4g0048051 27.530 494 321 11 38 506 8 489 4.58e-47 172
Msa0576490 MtrunA17_Chr1g0164871 28.310 491 299 14 48 506 18 487 2.83e-46 169
Msa0576490 MtrunA17_Chr8g0376631 35.474 327 202 5 50 373 23 343 2.96e-46 171
Msa0576490 MtrunA17_Chr8g0376631 31.707 123 80 1 405 527 451 569 4.20e-11 65.5
Msa0576490 MtrunA17_Chr1g0164851 28.513 491 298 14 48 506 18 487 3.87e-46 170
Msa0576490 MtrunA17_Chr2g0286721 28.118 473 310 7 35 503 34 480 9.45e-46 167
Msa0576490 MtrunA17_Chr4g0048411 29.048 420 276 9 118 531 108 511 1.48e-45 168
Msa0576490 MtrunA17_Chr2g0303701 33.628 339 209 5 50 383 23 350 6.75e-44 164
Msa0576490 MtrunA17_Chr4g0066581 30.063 479 293 14 35 503 37 483 2.70e-43 161
Msa0576490 MtrunA17_Chr8g0376601 32.768 354 228 6 34 383 6 353 5.98e-43 161
Msa0576490 MtrunA17_Chr5g0437021 26.190 504 313 14 37 506 9 487 7.00e-43 160
Msa0576490 MtrunA17_Chr7g0273281 26.907 472 309 8 52 520 64 502 2.68e-42 158
Msa0576490 MtrunA17_Chr3g0119401 28.633 461 285 12 58 503 98 529 5.44e-42 158
Msa0576490 MtrunA17_Chr2g0290181 32.353 340 214 6 52 383 26 357 3.82e-41 156
Msa0576490 MtrunA17_Chr2g0290181 37.778 90 56 0 417 506 467 556 2.00e-11 66.6
Msa0576490 MtrunA17_Chr7g0259471 26.593 455 300 11 59 504 42 471 1.63e-40 153
Msa0576490 MtrunA17_Chr4g0004821 28.834 489 314 11 30 510 14 476 5.13e-40 152
Msa0576490 MtrunA17_Chr8g0376611 34.892 278 171 4 103 378 12 281 1.36e-39 151
Msa0576490 MtrunA17_Chr8g0373191 28.330 473 272 15 52 508 38 459 1.10e-38 147
Msa0576490 MtrunA17_Chr6g0486021 28.908 467 301 10 51 510 48 490 1.59e-38 147
Msa0576490 MtrunA17_Chr3g0115731 25.852 499 296 12 38 506 12 466 1.40e-37 145
Msa0576490 MtrunA17_Chr7g0259221 25.053 475 322 10 40 504 23 473 1.78e-36 142
Msa0576490 MtrunA17_Chr4g0065351 27.467 375 240 10 171 528 1 360 6.17e-36 137
Msa0576490 MtrunA17_Chr3g0121674 29.412 306 205 3 214 515 1 299 1.15e-31 124
Msa0576490 MtrunA17_Chr2g0290161 29.021 286 154 6 111 386 21 267 8.04e-28 117
Msa0576490 MtrunA17_Chr5g0404191 32.314 229 144 4 54 281 51 269 2.57e-27 112
Msa0576490 MtrunA17_Chr5g0407441 29.756 205 140 4 54 255 5 208 4.47e-26 113
Msa0576490 MtrunA17_Chr5g0407441 27.679 224 141 7 289 500 489 703 1.65e-11 67.0
Msa0576490 MtrunA17_Chr3g0144261 29.412 204 142 2 53 255 4 206 1.11e-25 111
Msa0576490 MtrunA17_Chr3g0144261 31.276 243 148 6 288 519 496 730 3.05e-16 82.4
Msa0576490 MtrunA17_Chr8g0370141 31.884 207 133 4 51 252 2 205 1.66e-25 108
Msa0576490 MtrunA17_Chr5g0419321 30.978 184 123 3 75 255 54 236 5.58e-25 109
Msa0576490 MtrunA17_Chr5g0419321 27.234 235 140 5 289 506 515 735 8.12e-13 71.2
Msa0576490 MtrunA17_Chr3g0146061 34.000 200 118 6 64 255 15 208 1.73e-22 102
Msa0576490 MtrunA17_Chr3g0146061 27.477 222 144 6 289 500 507 721 1.09e-12 70.9
Msa0576490 MtrunA17_Chr5g0434231 33.333 180 93 3 90 269 2 154 1.19e-21 91.7
Msa0576490 MtrunA17_Chr7g0273261 28.295 258 165 6 264 518 9 249 1.53e-18 85.9
Msa0576490 MtrunA17_Chr7g0273271 24.757 206 147 2 34 239 9 206 6.91e-18 82.8
Msa0576490 MtrunA17_Chr5g0434251 35.484 93 60 0 416 508 49 141 1.88e-12 65.5
Msa0576490 MtrunA17_Chr5g0404181 35.922 103 59 2 404 503 30 128 3.46e-12 63.9
Msa0576490 MtrunA17_Chr1g0186831 23.958 384 242 12 150 499 133 500 9.46e-12 67.4
Msa0576490 MtrunA17_Chr4g0000061 22.908 502 316 16 51 511 27 498 1.87e-11 66.6
Msa0576490 MtrunA17_Chr3g0115771 23.197 319 181 12 163 474 7 268 2.16e-11 64.7
Msa0576490 MtrunA17_Chr5g0446681 23.039 204 138 3 38 240 7 192 3.13e-11 64.7
Msa0576490 MtrunA17_Chr8g0370151 26.772 254 170 5 262 506 102 348 5.34e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0576490 AT3G18830.1 51.619 494 227 4 50 531 33 526 1.13e-170 494
Msa0576490 AT4G36670.1 49.687 479 220 3 49 512 13 485 4.72e-169 489
Msa0576490 AT2G18480.1 51.178 467 220 3 48 506 17 483 5.75e-161 469
Msa0576490 AT2G16120.1 49.008 504 239 7 36 521 1 504 1.82e-160 468
Msa0576490 AT2G16130.1 47.913 503 244 7 36 520 1 503 1.33e-155 455
Msa0576490 AT2G20780.1 47.059 476 243 5 32 506 33 500 1.85e-155 455
Msa0576490 AT2G20780.2 45.212 449 236 5 82 530 26 464 1.31e-136 405
Msa0576490 AT5G17010.1 32.115 520 296 14 16 504 7 500 4.88e-63 215
Msa0576490 AT5G17010.3 32.115 520 296 14 16 504 7 500 4.88e-63 215
Msa0576490 AT5G17010.4 32.115 520 296 14 16 504 7 500 4.88e-63 215
Msa0576490 AT5G16150.2 32.515 489 304 11 23 503 69 539 3.06e-61 211
Msa0576490 AT5G16150.1 32.515 489 304 11 23 503 69 539 3.06e-61 211
Msa0576490 AT5G16150.3 32.515 489 304 11 23 503 69 539 3.06e-61 211
Msa0576490 AT2G43330.1 31.028 506 316 9 42 530 20 509 5.90e-60 207
Msa0576490 AT5G59250.1 31.847 471 278 12 58 504 103 554 2.50e-59 207
Msa0576490 AT3G03090.1 32.640 481 278 14 50 504 40 500 9.65e-59 204
Msa0576490 AT5G26340.1 27.477 535 322 12 38 529 10 521 5.55e-57 199
Msa0576490 AT3G19930.1 28.599 514 321 12 43 523 13 513 7.27e-57 199
Msa0576490 AT3G19930.2 28.599 514 321 12 43 523 13 513 7.27e-57 199
Msa0576490 AT1G77210.2 28.629 496 311 12 48 512 21 504 1.78e-56 197
Msa0576490 AT1G77210.1 28.629 496 311 12 48 512 21 504 1.78e-56 197
Msa0576490 AT3G19940.1 26.430 507 321 12 49 516 21 514 3.16e-56 197
Msa0576490 AT4G02050.2 28.221 489 313 10 41 506 15 488 3.46e-56 197
Msa0576490 AT4G02050.1 28.221 489 313 10 41 506 15 488 3.46e-56 197
Msa0576490 AT1G50310.1 26.819 481 310 11 49 502 21 486 1.35e-55 196
Msa0576490 AT5G23270.1 28.543 501 319 12 34 508 5 492 1.79e-55 195
Msa0576490 AT1G11260.1 26.938 516 326 12 48 524 18 521 1.69e-54 192
Msa0576490 AT1G75220.1 30.339 501 309 11 17 506 15 486 1.68e-52 186
Msa0576490 AT3G05150.2 30.208 480 298 11 36 507 20 470 6.31e-49 177
Msa0576490 AT1G34580.1 27.869 488 308 12 44 502 15 487 6.96e-49 177
Msa0576490 AT3G05150.1 30.208 480 298 12 36 507 20 470 1.35e-48 176
Msa0576490 AT3G05150.3 30.208 480 298 12 36 507 20 470 1.35e-48 176
Msa0576490 AT1G19450.1 29.167 504 311 14 17 506 16 487 1.47e-48 176
Msa0576490 AT5G26250.1 27.236 492 318 11 36 503 5 480 3.07e-48 175
Msa0576490 AT5G27350.1 27.328 494 323 9 31 516 9 474 1.09e-47 173
Msa0576490 AT3G05160.1 27.975 479 297 10 37 504 11 452 1.40e-47 172
Msa0576490 AT1G34580.2 30.120 415 265 10 98 502 38 437 2.92e-47 171
Msa0576490 AT4G21480.1 26.411 496 319 13 39 506 10 487 3.42e-47 172
Msa0576490 AT5G27360.1 27.984 486 310 9 41 516 23 478 9.43e-47 171
Msa0576490 AT5G27360.3 28.221 489 309 10 39 516 69 526 2.17e-46 171
Msa0576490 AT1G30220.1 33.828 337 214 5 50 383 25 355 3.91e-46 171
Msa0576490 AT1G30220.1 38.462 91 56 0 416 506 466 556 1.72e-13 73.6
Msa0576490 AT1G08930.1 25.322 466 326 7 41 505 46 490 6.62e-46 169
Msa0576490 AT1G08930.2 25.322 466 326 7 41 505 46 490 6.62e-46 169
Msa0576490 AT3G05960.1 26.296 521 324 13 38 518 6 506 1.32e-45 168
Msa0576490 AT1G07340.1 27.801 482 303 11 48 502 18 481 1.80e-45 167
Msa0576490 AT3G05165.3 26.971 482 298 11 37 504 20 461 2.57e-45 166
Msa0576490 AT3G05165.2 26.971 482 298 11 37 504 20 461 2.57e-45 166
Msa0576490 AT3G05165.1 26.971 482 298 11 37 504 20 461 2.57e-45 166
Msa0576490 AT1G05030.1 30.087 462 288 13 60 511 86 522 9.39e-45 166
Msa0576490 AT3G05160.3 28.406 433 268 9 83 504 2 403 1.03e-43 160
Msa0576490 AT3G05160.2 28.406 433 268 9 83 504 2 403 1.03e-43 160
Msa0576490 AT1G54730.2 27.447 470 311 9 39 503 18 462 1.07e-43 162
Msa0576490 AT1G77210.3 30.362 359 227 9 165 512 9 355 2.54e-43 158
Msa0576490 AT2G48020.2 26.971 482 312 9 31 505 12 460 5.45e-43 160
Msa0576490 AT2G48020.1 26.971 482 312 9 31 505 12 460 5.45e-43 160
Msa0576490 AT2G35740.1 32.544 338 216 5 52 383 25 356 5.88e-43 162
Msa0576490 AT2G35740.1 36.667 90 57 0 417 506 470 559 2.57e-11 66.6
Msa0576490 AT1G08900.1 27.731 476 311 10 39 508 12 460 1.47e-42 159
Msa0576490 AT1G08900.2 27.731 476 311 10 39 508 12 460 1.47e-42 159
Msa0576490 AT1G08900.3 27.521 476 304 11 39 508 12 452 1.75e-42 158
Msa0576490 AT3G05400.1 28.634 454 276 14 67 508 44 461 2.52e-42 158
Msa0576490 AT1G08900.5 28.636 440 282 9 75 508 5 418 4.87e-42 156
Msa0576490 AT1G50310.2 29.769 346 221 9 164 502 13 343 8.03e-42 154
Msa0576490 AT5G61520.1 26.243 503 326 12 33 506 5 491 9.94e-42 157
Msa0576490 AT3G05155.1 27.932 469 302 11 41 503 17 455 1.01e-41 156
Msa0576490 AT4G16480.2 32.938 337 216 5 52 383 26 357 1.63e-41 158
Msa0576490 AT4G16480.2 32.407 108 73 0 417 524 471 578 1.01e-11 68.2
Msa0576490 AT4G16480.3 32.938 337 216 5 52 383 26 357 1.63e-41 158
Msa0576490 AT4G16480.3 32.407 108 73 0 417 524 471 578 1.01e-11 68.2
Msa0576490 AT4G16480.1 32.938 337 216 5 52 383 26 357 1.63e-41 158
Msa0576490 AT4G16480.1 32.407 108 73 0 417 524 471 578 1.01e-11 68.2
Msa0576490 AT1G05030.2 30.216 417 258 12 103 511 79 470 4.93e-41 155
Msa0576490 AT5G17010.2 27.183 504 279 12 16 504 7 437 4.67e-40 151
Msa0576490 AT1G79820.2 30.310 452 286 10 58 503 59 487 5.10e-40 152
Msa0576490 AT1G79820.1 30.310 452 286 10 58 503 59 487 5.10e-40 152
Msa0576490 AT5G61520.2 28.329 413 277 9 98 506 46 443 5.59e-40 152
Msa0576490 AT5G18840.1 27.615 478 299 11 42 503 29 475 7.92e-40 151
Msa0576490 AT1G08890.1 27.061 473 311 10 38 503 12 457 2.39e-39 150
Msa0576490 AT3G05165.4 27.488 422 253 10 37 444 20 402 2.15e-38 147
Msa0576490 AT3G05165.5 27.488 422 253 10 37 444 20 402 2.15e-38 147
Msa0576490 AT3G05165.6 27.488 422 253 10 37 444 20 402 2.40e-38 148
Msa0576490 AT1G67300.2 29.259 499 312 14 16 503 19 487 3.47e-38 147
Msa0576490 AT1G54730.3 26.932 427 283 8 39 460 18 420 1.20e-37 144
Msa0576490 AT1G67300.1 29.259 499 311 15 16 503 19 486 2.67e-37 144
Msa0576490 AT1G67300.3 29.259 499 311 15 16 503 19 486 2.67e-37 144
Msa0576490 AT3G05400.2 28.140 430 248 14 109 508 43 441 3.74e-37 143
Msa0576490 AT5G27360.2 28.535 396 243 9 131 516 9 374 5.45e-37 141
Msa0576490 AT5G27360.5 28.535 396 243 9 131 516 9 374 5.45e-37 141
Msa0576490 AT4G04750.1 26.022 465 306 11 61 515 44 480 5.54e-37 144
Msa0576490 AT4G04750.2 26.022 465 306 11 61 515 44 480 5.54e-37 144
Msa0576490 AT4G04750.3 26.022 465 306 11 61 515 88 524 1.06e-36 143
Msa0576490 AT4G04760.1 27.515 487 294 16 50 515 28 476 1.74e-36 142
Msa0576490 AT4G04760.3 27.974 454 268 16 83 515 2 417 8.85e-36 139
Msa0576490 AT1G08920.1 27.198 489 325 12 21 504 1 463 3.88e-35 138
Msa0576490 AT1G54730.5 25.319 470 300 9 39 503 18 441 6.60e-35 137
Msa0576490 AT1G08920.2 27.016 496 324 12 21 504 1 470 6.88e-35 137
Msa0576490 AT1G79820.4 30.653 398 247 10 58 449 59 433 1.54e-34 136
Msa0576490 AT1G67300.6 29.213 445 273 14 16 449 19 432 4.06e-34 135
Msa0576490 AT1G67300.7 29.213 445 273 14 16 449 19 432 4.06e-34 135
Msa0576490 AT4G04760.2 26.598 485 298 16 50 515 28 473 1.13e-33 134
Msa0576490 AT1G67300.4 29.167 432 272 14 16 440 19 423 5.53e-33 131
Msa0576490 AT1G67300.5 29.167 432 272 14 16 440 19 423 5.53e-33 131
Msa0576490 AT1G08900.4 27.804 428 277 9 39 460 12 413 6.67e-33 131
Msa0576490 AT5G27360.4 27.119 413 260 9 41 442 23 405 1.32e-32 130
Msa0576490 AT1G54730.9 26.566 399 264 8 39 432 18 392 2.80e-32 129
Msa0576490 AT1G54730.7 26.566 399 264 8 39 432 18 392 2.80e-32 129
Msa0576490 AT1G54730.4 24.590 427 272 8 39 460 18 399 5.19e-29 119
Msa0576490 AT3G20460.1 23.800 479 322 10 35 503 38 483 6.05e-29 120
Msa0576490 AT1G08920.3 26.244 442 302 9 21 460 1 420 1.39e-28 119
Msa0576490 AT3G05155.2 27.515 338 213 8 41 374 17 326 3.56e-28 115
Msa0576490 AT2G48020.4 24.786 351 239 6 31 381 12 337 5.60e-28 116
Msa0576490 AT1G54730.11 25.893 336 230 6 39 374 18 334 1.02e-27 114
Msa0576490 AT2G48020.3 24.789 355 242 6 31 385 12 341 2.64e-27 113
Msa0576490 AT3G51490.2 30.242 248 160 6 51 287 2 247 4.97e-27 116
Msa0576490 AT3G51490.2 28.333 240 146 7 278 506 496 720 3.77e-13 72.8
Msa0576490 AT3G51490.1 30.242 248 160 6 51 287 2 247 5.08e-27 116
Msa0576490 AT3G51490.1 27.234 235 147 7 278 506 496 712 9.31e-11 65.1
Msa0576490 AT1G20840.2 32.353 204 132 3 55 255 6 206 2.02e-26 114
Msa0576490 AT1G20840.2 30.172 232 139 9 288 506 498 719 3.76e-11 66.6
Msa0576490 AT1G20840.1 32.353 204 132 3 55 255 6 206 2.02e-26 114
Msa0576490 AT1G20840.1 30.172 232 139 9 288 506 498 719 3.76e-11 66.6
Msa0576490 AT1G54730.10 24.919 309 217 5 39 347 18 311 4.73e-24 103
Msa0576490 AT1G54730.6 24.919 309 217 5 39 347 18 311 4.73e-24 103
Msa0576490 AT1G54730.8 24.060 399 253 8 39 432 18 371 7.11e-24 104
Msa0576490 AT4G35300.9 32.653 196 126 4 64 255 15 208 4.30e-23 104
Msa0576490 AT4G35300.9 26.754 228 152 4 288 506 495 716 1.19e-12 71.2
Msa0576490 AT4G35300.2 32.653 196 126 4 64 255 15 208 4.30e-23 104
Msa0576490 AT4G35300.2 26.754 228 152 4 288 506 495 716 1.19e-12 71.2
Msa0576490 AT4G35300.3 32.653 196 126 4 64 255 15 208 4.30e-23 104
Msa0576490 AT4G35300.3 26.754 228 152 4 288 506 495 716 1.19e-12 71.2
Msa0576490 AT4G35300.4 32.653 196 126 4 64 255 15 208 4.73e-23 103
Msa0576490 AT4G35300.4 26.754 228 152 4 288 506 505 726 1.31e-12 71.2
Msa0576490 AT4G35300.8 32.653 196 126 4 64 255 15 208 4.73e-23 103
Msa0576490 AT4G35300.8 26.754 228 152 4 288 506 505 726 1.31e-12 71.2
Msa0576490 AT4G35300.6 32.653 196 126 4 64 255 15 208 4.73e-23 103
Msa0576490 AT4G35300.6 26.754 228 152 4 288 506 505 726 1.31e-12 71.2
Msa0576490 AT4G35300.11 32.653 196 126 4 64 255 15 208 4.73e-23 103
Msa0576490 AT4G35300.11 26.754 228 152 4 288 506 505 726 1.31e-12 71.2
Msa0576490 AT4G35300.1 32.653 196 126 4 64 255 15 208 4.73e-23 103
Msa0576490 AT4G35300.1 26.754 228 152 4 288 506 505 726 1.31e-12 71.2
Msa0576490 AT4G35300.10 32.653 196 126 4 64 255 15 208 4.73e-23 103
Msa0576490 AT4G35300.10 26.754 228 152 4 288 506 505 726 1.31e-12 71.2
Msa0576490 AT4G35300.7 32.653 196 126 4 64 255 15 208 4.73e-23 103
Msa0576490 AT4G35300.7 26.754 228 152 4 288 506 505 726 1.31e-12 71.2
Msa0576490 AT3G51490.3 30.645 186 120 4 110 287 13 197 2.39e-22 101
Msa0576490 AT3G51490.3 28.333 240 146 7 278 506 446 670 4.29e-13 72.8
Msa0576490 AT1G79820.3 34.010 197 124 3 58 251 59 252 1.17e-20 95.5
Msa0576490 AT4G35300.5 26.754 228 152 4 288 506 308 529 1.62e-12 70.5
Msa0576490 AT5G43350.1 22.495 489 283 16 96 526 73 523 5.03e-11 65.9
Msa0576490 AT3G20660.1 22.348 528 352 20 3 519 43 523 7.75e-11 65.1

Find 121 sgRNAs with CRISPR-Local

Find 362 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCGATTTATTTGGATAAATT+TGG 0.096076 4_1:-80574773 Msa0576490:CDS
CTTTGTGTTGGCAGGAATTT+TGG 0.167779 4_1:-80574432 Msa0576490:CDS
ATTCGGAGTTAATGTGATTA+TGG 0.219057 4_1:-80574828 Msa0576490:CDS
GCAGCAGCCACATTCTTAAT+TGG 0.236384 4_1:-80575475 Msa0576490:CDS
GAGAATCATGCTTGCGATTT+CGG 0.251888 4_1:-80575218 Msa0576490:CDS
CGACCCATGGGCCTGGAAAT+TGG 0.255935 4_1:-80575024 Msa0576490:CDS
AGCCTTAGTTCAGCTTCTTC+TGG 0.257644 4_1:+80575076 None:intergenic
TTGGGCTTGGGCCTATTACT+TGG 0.257763 4_1:-80574595 Msa0576490:CDS
AGAAATCAACATACGCTTAA+TGG 0.268855 4_1:+80574955 None:intergenic
AGGGTTCGGGGAAGCCTGTT+TGG 0.273220 4_1:-80574670 Msa0576490:CDS
ATTCTCCAACCAAGGTTTAT+AGG 0.276627 4_1:+80575235 None:intergenic
AACAAACGACCTATAATTTC+AGG 0.278138 4_1:-80576191 Msa0576490:intron
GAGCATATGCATGGTTTCTT+TGG 0.280615 4_1:-80576242 Msa0576490:exon
CGTATGTTGATTTCTGCTAT+TGG 0.288959 4_1:-80574947 Msa0576490:CDS
CGATTTATTTGGATAAATTT+GGG 0.299699 4_1:-80574772 Msa0576490:CDS
ATTTCGAAGAAGATAACTTT+TGG 0.302177 4_1:-80574464 Msa0576490:CDS
TTCCGGTGCTTGTAATCTAA+TGG 0.303488 4_1:-80573949 None:intergenic
TTCTTCTAATGTCTTGCCTT+TGG 0.309108 4_1:+80574370 None:intergenic
GTCGTTGTTTGGGCTTGGTT+TGG 0.311988 4_1:-80574708 Msa0576490:CDS
CCTTGACCATTCCAATTTCC+AGG 0.320701 4_1:+80575013 None:intergenic
TAACAATAGTAATGAGAAAC+AGG 0.322736 4_1:-80574309 Msa0576490:CDS
CACGATAAGGGTGTGGAAAA+AGG 0.325380 4_1:-80574281 Msa0576490:CDS
AATGTCTTGCCTTTGGTCTC+TGG 0.328319 4_1:+80574377 None:intergenic
GGTATGGCTGTGTCGTTGTT+TGG 0.329531 4_1:-80574719 Msa0576490:CDS
GTATGTTGATTTCTGCTATT+GGG 0.330958 4_1:-80574946 Msa0576490:CDS
TTCGGAGTTAATGTGATTAT+GGG 0.336573 4_1:-80574827 Msa0576490:CDS
CATGATTTCGCCTCTCTATA+CGG 0.336929 4_1:-80575368 Msa0576490:CDS
GTGATCAAACCTGAAATTAT+AGG 0.338776 4_1:+80576182 None:intergenic
ACAAGCCAATGAGGAGATTC+AGG 0.340207 4_1:+80575154 None:intergenic
ATTGGAATGGTCAAGGTGTT+TGG 0.342294 4_1:-80575006 Msa0576490:CDS
GGGTTCGGGGAAGCCTGTTT+GGG 0.343937 4_1:-80574669 Msa0576490:CDS
AGGCAAGACATTAGAAGAAA+TGG 0.351728 4_1:-80574366 Msa0576490:CDS
CATACGCTTAATGGGCTTGC+TGG 0.352250 4_1:+80574964 None:intergenic
AGAGGCTAGTGATCCGATTA+AGG 0.360619 4_1:+80575543 None:intergenic
GACGAATAAACCCAAGTAAT+AGG 0.376349 4_1:+80574584 None:intergenic
CTCAACGTGTGTTCCTTAAT+CGG 0.385617 4_1:-80575556 Msa0576490:CDS
ATCACTCTTGGAATTCTCAT+TGG 0.388963 4_1:-80575289 Msa0576490:CDS
AATTTCTTCATGCAAGCATC+TGG 0.394503 4_1:-80574920 Msa0576490:CDS
GTATGGCTGTGTCGTTGTTT+GGG 0.398304 4_1:-80574718 Msa0576490:CDS
GAAATCAACATACGCTTAAT+GGG 0.401834 4_1:+80574956 None:intergenic
TCGTTGTTTGGGCTTGGTTT+GGG 0.403167 4_1:-80574707 Msa0576490:CDS
GGAATGTTCTTTGTGTTGGC+AGG 0.406998 4_1:-80574440 Msa0576490:CDS
TGGGCTTGGGCCTATTACTT+GGG 0.410541 4_1:-80574594 Msa0576490:CDS
CCAAGAGTGATGAATACTTC+AGG 0.413010 4_1:+80575301 None:intergenic
ACGAATTCAACAAGAAATAC+TGG 0.415231 4_1:-80575587 Msa0576490:CDS
CCTTGAGCTCTAAGCCTCAT+AGG 0.421634 4_1:+80574551 None:intergenic
CCTGAAGTATTCATCACTCT+TGG 0.429913 4_1:-80575301 Msa0576490:CDS
TTATGCCTGAATCTCCTCAT+TGG 0.433079 4_1:-80575159 Msa0576490:CDS
GCTGTGTCGTTGTTTGGGCT+TGG 0.434203 4_1:-80574713 Msa0576490:CDS
CCCTCATATGACTCATGCTT+CGG 0.436869 4_1:-80573999 Msa0576490:CDS
AATGATTCGACCCATGGGCC+TGG 0.450651 4_1:-80575031 Msa0576490:CDS
GAGGAAACCACGTGTGGTGG+TGG 0.452634 4_1:+80575333 None:intergenic
TTCTACCAGTTAAGATGAAA+AGG 0.454141 4_1:+80575422 None:intergenic
GGAAACCACGTGTGGTGGTG+GGG 0.460413 4_1:+80575335 None:intergenic
ACCGAAGCATGAGTCATATG+AGG 0.463108 4_1:+80573998 None:intergenic
AAGTGAAAGAAGAACACGTT+TGG 0.463421 4_1:+80575108 None:intergenic
GTATTGCAATTTCAGTGAAT+CGG 0.469528 4_1:-80574523 Msa0576490:CDS
TTAACTGGTAGAATGATTGC+CGG 0.471849 4_1:-80575412 Msa0576490:CDS
TTTAAAGCTGCTGGGATTCA+CGG 0.473398 4_1:-80574863 Msa0576490:CDS
GGCAAAACCTCCGACACAAT+CGG 0.474469 4_1:-80575520 Msa0576490:CDS
CACACCACAACAGCCCAAAC+AGG 0.478548 4_1:+80574656 None:intergenic
ATCTTCCTATAAACCTTGGT+TGG 0.480684 4_1:-80575240 Msa0576490:CDS
GTGACCGTAGCCGAGGAGAA+TGG 0.490976 4_1:+80575783 None:intergenic
TGCATAACCAACGCCAATGC+CGG 0.491265 4_1:+80575393 None:intergenic
CATTCCAATTTCCAGGCCCA+TGG 0.493226 4_1:+80575020 None:intergenic
GAAACAGGGTAGTCACGATA+AGG 0.493974 4_1:-80574294 Msa0576490:CDS
GAAACCACGTGTGGTGGTGG+GGG 0.497288 4_1:+80575336 None:intergenic
GGTAGAATGATTGCCGGCAT+TGG 0.499470 4_1:-80575406 Msa0576490:CDS
TATTACTTGGGTTTATTCGT+CGG 0.500169 4_1:-80574582 Msa0576490:CDS
CCTATGAGGCTTAGAGCTCA+AGG 0.502005 4_1:-80574551 Msa0576490:CDS
GTTGATTGGGTCGTTTGGTA+TGG 0.503246 4_1:-80574735 Msa0576490:CDS
GAAGCCTGTTTGGGCTGTTG+TGG 0.508508 4_1:-80574660 Msa0576490:CDS
TATACAAACATAAAAGAAAC+CGG 0.508891 4_1:+80574400 None:intergenic
ATACGCTTAATGGGCTTGCT+GGG 0.514483 4_1:+80574965 None:intergenic
AACGACCCAATCAACAAAAG+AGG 0.515727 4_1:+80574743 None:intergenic
CTCCAGAAGAAGCTGAACTA+AGG 0.515892 4_1:-80575078 Msa0576490:CDS
AGGAAACCACGTGTGGTGGT+GGG 0.518887 4_1:+80575334 None:intergenic
AACCATTAGATTACAAGCAC+CGG 0.519177 4_1:+80573947 None:intergenic
TCAGTGAATCGGTTGGTAAG+TGG 0.520141 4_1:-80574512 Msa0576490:CDS
ATGATTGCCGGCATTGGCGT+TGG 0.525057 4_1:-80575400 Msa0576490:CDS
TGCAATTTCAGTGAATCGGT+TGG 0.526155 4_1:-80574519 Msa0576490:CDS
AAACAGGGTAGTCACGATAA+GGG 0.529928 4_1:-80574293 Msa0576490:CDS
AACTCCATTCTCCTCGGCTA+CGG 0.533061 4_1:-80575787 Msa0576490:intron
ACAGATCTTCCTATAAACCT+TGG 0.534847 4_1:-80575244 Msa0576490:CDS
TTCCGGTGAGTAATATATAA+CGG 0.540717 4_1:+80574889 None:intergenic
CCAAAAGCAATTAAAATCGC+AGG 0.554301 4_1:+80575190 None:intergenic
CAAGCATGATTCTCCAACCA+AGG 0.566441 4_1:+80575227 None:intergenic
ATGCATATGCTCTGCAACCA+CGG 0.566460 4_1:+80576253 None:intergenic
ATGCTCTGCAACCACGGTCA+AGG 0.571929 4_1:+80576259 None:intergenic
ATTCCAATTTCCAGGCCCAT+GGG 0.576951 4_1:+80575021 None:intergenic
TTAATCGGATCACTAGCCTC+TGG 0.576984 4_1:-80575541 Msa0576490:CDS
ATTTGGATAAATTTGGGAGG+CGG 0.578238 4_1:-80574766 Msa0576490:CDS
GCAGATATTGGAGTTATGAG+TGG 0.580027 4_1:-80575646 Msa0576490:intron
CCTTTGAAAACAAGCCAATG+AGG 0.580197 4_1:+80575145 None:intergenic
GCGTCGTCCGATTGTGTCGG+AGG 0.585672 4_1:+80575513 None:intergenic
GGCTGTTGTGGTGTGCATTG+TGG 0.586509 4_1:-80574648 Msa0576490:CDS
CATGGGCCTGGAAATTGGAA+TGG 0.589396 4_1:-80575019 Msa0576490:CDS
GATAGCTCCAATTAAGAATG+TGG 0.593155 4_1:+80575468 None:intergenic
GTAGCCGAGGAGAATGGAGT+TGG 0.596763 4_1:+80575789 None:intergenic
GGGTAGTCACGATAAGGGTG+TGG 0.598862 4_1:-80574288 Msa0576490:CDS
ACCAGTTAAGATGAAAAGGA+AGG 0.603097 4_1:+80575426 None:intergenic
TCAACCAACTCCATTCTCCT+CGG 0.608495 4_1:-80575793 Msa0576490:CDS
AGTGTGAGTGACCGTAGCCG+AGG 0.610877 4_1:+80575776 None:intergenic
TGCCGTTATATATTACTCAC+CGG 0.612747 4_1:-80574891 Msa0576490:CDS
CCTGGAAATTGGAATGGTCA+AGG 0.618100 4_1:-80575013 Msa0576490:CDS
GAGAGTTCTGCCGTATAGAG+AGG 0.619005 4_1:+80575358 None:intergenic
ATTCAACAAGAAATACTGGT+AGG 0.623074 4_1:-80575583 Msa0576490:CDS
GTGGTTGCAGAGCATATGCA+TGG 0.626595 4_1:-80576251 Msa0576490:exon
CCGAAGCATGAGTCATATGA+GGG 0.626889 4_1:+80573999 None:intergenic
GTATCTGTTGATGCGAATTG+AGG 0.627690 4_1:+80575840 None:intergenic
CGATTAAGGAACACACGTTG+AGG 0.637851 4_1:+80575557 None:intergenic
GTAGCGTCGTCCGATTGTGT+CGG 0.643886 4_1:+80575510 None:intergenic
TTTATTTGGATAAATTTGGG+AGG 0.646571 4_1:-80574769 Msa0576490:CDS
ATACTTCAGGAAGCGAAGTG+AGG 0.648850 4_1:+80575314 None:intergenic
GTTTGTATACCAGAGACCAA+AGG 0.651583 4_1:-80574386 Msa0576490:CDS
AGTGAGGAAACCACGTGTGG+TGG 0.676857 4_1:+80575330 None:intergenic
CGAAGTGAGGAAACCACGTG+TGG 0.678253 4_1:+80575327 None:intergenic
AATGGAAACTCTCTTCGTCG+AGG 0.684483 4_1:-80574348 Msa0576490:CDS
GAATCGGTTGGTAAGTGGAG+TGG 0.690356 4_1:-80574507 Msa0576490:CDS
AACAATAGTAATGAGAAACA+GGG 0.691089 4_1:-80574308 Msa0576490:CDS
TTGACGAGAAAAGAGCACAG+AGG 0.775973 4_1:+80575812 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTGTTTATATTAGTAAAG+TGG - chr4_1:80574116-80574135 Msa0576490:intron 15.0%
!!! GAGTTTTTTTTTTTTTCTTT+CGG - chr4_1:80575422-80575441 Msa0576490:CDS 15.0%
!!! ACCATCATAAATTATTTTAT+AGG - chr4_1:80576180-80576199 Msa0576490:intron 15.0%
!! ACCTATAAAATAATTTATGA+TGG + chr4_1:80576184-80576203 None:intergenic 15.0%
!!! TTTTGTTTATATTAGTAAAG+TGG - chr4_1:80574116-80574135 Msa0576490:intron 15.0%
!!! GAGTTTTTTTTTTTTTCTTT+CGG - chr4_1:80575422-80575441 Msa0576490:CDS 15.0%
!!! ACCATCATAAATTATTTTAT+AGG - chr4_1:80576180-80576199 Msa0576490:intron 15.0%
!! ACCTATAAAATAATTTATGA+TGG + chr4_1:80576184-80576203 None:intergenic 15.0%
!! TCAACTTATTGAATTTAACA+AGG - chr4_1:80574192-80574211 Msa0576490:intron 20.0%
!! ATTTATGAACATTAATAAGC+TGG + chr4_1:80574248-80574267 None:intergenic 20.0%
!! AAAGTCATAAATAGAAAGAT+GGG + chr4_1:80574517-80574536 None:intergenic 20.0%
!! CGATTTATTTGGATAAATTT+GGG - chr4_1:80575445-80575464 Msa0576490:CDS 20.0%
!! TATACAAACATAAAAGAAAC+CGG + chr4_1:80575820-80575839 None:intergenic 20.0%
!! TCAACTTATTGAATTTAACA+AGG - chr4_1:80574192-80574211 Msa0576490:intron 20.0%
!! ATTTATGAACATTAATAAGC+TGG + chr4_1:80574248-80574267 None:intergenic 20.0%
!! AAAGTCATAAATAGAAAGAT+GGG + chr4_1:80574517-80574536 None:intergenic 20.0%
!! CGATTTATTTGGATAAATTT+GGG - chr4_1:80575445-80575464 Msa0576490:CDS 20.0%
!! TATACAAACATAAAAGAAAC+CGG + chr4_1:80575820-80575839 None:intergenic 20.0%
! ACTTATTGAATTTAACAAGG+AGG - chr4_1:80574195-80574214 Msa0576490:intron 25.0%
! CAAAGTCATAAATAGAAAGA+TGG + chr4_1:80574518-80574537 None:intergenic 25.0%
! TTATAATGCATTGCAGATAT+TGG - chr4_1:80574559-80574578 Msa0576490:CDS 25.0%
!!! TTTGGAAAGAGCTTTTTTTA+AGG - chr4_1:80575229-80575248 Msa0576490:CDS 25.0%
! GCGATTTATTTGGATAAATT+TGG - chr4_1:80575444-80575463 Msa0576490:CDS 25.0%
! TTTATTTGGATAAATTTGGG+AGG - chr4_1:80575448-80575467 Msa0576490:CDS 25.0%
!! ATGTTTCGTTCTTTTCTATT+GGG - chr4_1:80575604-80575623 Msa0576490:CDS 25.0%
!! ATTTCGAAGAAGATAACTTT+TGG - chr4_1:80575753-80575772 Msa0576490:intron 25.0%
!! TTTCGAAGAAGATAACTTTT+GGG - chr4_1:80575754-80575773 Msa0576490:intron 25.0%
! TAACAATAGTAATGAGAAAC+AGG - chr4_1:80575908-80575927 Msa0576490:CDS 25.0%
! AACAATAGTAATGAGAAACA+GGG - chr4_1:80575909-80575928 Msa0576490:CDS 25.0%
!!! TCTACATCGTTTTTTTTTTC+CGG - chr4_1:80576251-80576270 Msa0576490:exon 25.0%
! ACTTATTGAATTTAACAAGG+AGG - chr4_1:80574195-80574214 Msa0576490:intron 25.0%
! CAAAGTCATAAATAGAAAGA+TGG + chr4_1:80574518-80574537 None:intergenic 25.0%
! TTATAATGCATTGCAGATAT+TGG - chr4_1:80574559-80574578 Msa0576490:CDS 25.0%
!!! TTTGGAAAGAGCTTTTTTTA+AGG - chr4_1:80575229-80575248 Msa0576490:CDS 25.0%
! GCGATTTATTTGGATAAATT+TGG - chr4_1:80575444-80575463 Msa0576490:CDS 25.0%
! TTTATTTGGATAAATTTGGG+AGG - chr4_1:80575448-80575467 Msa0576490:CDS 25.0%
!! ATGTTTCGTTCTTTTCTATT+GGG - chr4_1:80575604-80575623 Msa0576490:CDS 25.0%
!! ATTTCGAAGAAGATAACTTT+TGG - chr4_1:80575753-80575772 Msa0576490:intron 25.0%
!! TTTCGAAGAAGATAACTTTT+GGG - chr4_1:80575754-80575773 Msa0576490:intron 25.0%
! TAACAATAGTAATGAGAAAC+AGG - chr4_1:80575908-80575927 Msa0576490:CDS 25.0%
! AACAATAGTAATGAGAAACA+GGG - chr4_1:80575909-80575928 Msa0576490:CDS 25.0%
!!! TCTACATCGTTTTTTTTTTC+CGG - chr4_1:80576251-80576270 Msa0576490:exon 25.0%
AACAAACGACCTATAATTTC+AGG - chr4_1:80574026-80574045 Msa0576490:intron 30.0%
GTGATCAAACCTGAAATTAT+AGG + chr4_1:80574038-80574057 None:intergenic 30.0%
ACGAATTCAACAAGAAATAC+TGG - chr4_1:80574630-80574649 Msa0576490:CDS 30.0%
ATTCAACAAGAAATACTGGT+AGG - chr4_1:80574634-80574653 Msa0576490:CDS 30.0%
TTCTACCAGTTAAGATGAAA+AGG + chr4_1:80574798-80574817 None:intergenic 30.0%
GAAATCAACATACGCTTAAT+GGG + chr4_1:80575264-80575283 None:intergenic 30.0%
AGAAATCAACATACGCTTAA+TGG + chr4_1:80575265-80575284 None:intergenic 30.0%
!! GTATGTTGATTTCTGCTATT+GGG - chr4_1:80575271-80575290 Msa0576490:CDS 30.0%
TTCCGGTGAGTAATATATAA+CGG + chr4_1:80575331-80575350 None:intergenic 30.0%
ATTCGGAGTTAATGTGATTA+TGG - chr4_1:80575389-80575408 Msa0576490:CDS 30.0%
TTCGGAGTTAATGTGATTAT+GGG - chr4_1:80575390-80575409 Msa0576490:CDS 30.0%
! TTTTCTTTCGGCGATTTATT+TGG - chr4_1:80575434-80575453 Msa0576490:CDS 30.0%
! GATGTTTCGTTCTTTTCTAT+TGG - chr4_1:80575603-80575622 Msa0576490:CDS 30.0%
TATTACTTGGGTTTATTCGT+CGG - chr4_1:80575635-80575654 Msa0576490:CDS 30.0%
GTATTGCAATTTCAGTGAAT+CGG - chr4_1:80575694-80575713 Msa0576490:intron 30.0%
! TTCGAAGAAGATAACTTTTG+GGG - chr4_1:80575755-80575774 Msa0576490:intron 30.0%
TTCAATCCACAAATACAGTT+TGG + chr4_1:80576100-80576119 None:intergenic 30.0%
AAACTACCAATGTTATGAGA+AGG - chr4_1:80576141-80576160 Msa0576490:intron 30.0%
AACAAACGACCTATAATTTC+AGG - chr4_1:80574026-80574045 Msa0576490:intron 30.0%
GTGATCAAACCTGAAATTAT+AGG + chr4_1:80574038-80574057 None:intergenic 30.0%
ACGAATTCAACAAGAAATAC+TGG - chr4_1:80574630-80574649 Msa0576490:CDS 30.0%
ATTCAACAAGAAATACTGGT+AGG - chr4_1:80574634-80574653 Msa0576490:CDS 30.0%
TTCTACCAGTTAAGATGAAA+AGG + chr4_1:80574798-80574817 None:intergenic 30.0%
GAAATCAACATACGCTTAAT+GGG + chr4_1:80575264-80575283 None:intergenic 30.0%
AGAAATCAACATACGCTTAA+TGG + chr4_1:80575265-80575284 None:intergenic 30.0%
!! GTATGTTGATTTCTGCTATT+GGG - chr4_1:80575271-80575290 Msa0576490:CDS 30.0%
TTCCGGTGAGTAATATATAA+CGG + chr4_1:80575331-80575350 None:intergenic 30.0%
ATTCGGAGTTAATGTGATTA+TGG - chr4_1:80575389-80575408 Msa0576490:CDS 30.0%
TTCGGAGTTAATGTGATTAT+GGG - chr4_1:80575390-80575409 Msa0576490:CDS 30.0%
! TTTTCTTTCGGCGATTTATT+TGG - chr4_1:80575434-80575453 Msa0576490:CDS 30.0%
! GATGTTTCGTTCTTTTCTAT+TGG - chr4_1:80575603-80575622 Msa0576490:CDS 30.0%
TATTACTTGGGTTTATTCGT+CGG - chr4_1:80575635-80575654 Msa0576490:CDS 30.0%
GTATTGCAATTTCAGTGAAT+CGG - chr4_1:80575694-80575713 Msa0576490:intron 30.0%
! TTCGAAGAAGATAACTTTTG+GGG - chr4_1:80575755-80575774 Msa0576490:intron 30.0%
TTCAATCCACAAATACAGTT+TGG + chr4_1:80576100-80576119 None:intergenic 30.0%
AAACTACCAATGTTATGAGA+AGG - chr4_1:80576141-80576160 Msa0576490:intron 30.0%
! TGAGATACAGTTACTGGTTA+TGG + chr4_1:80574159-80574178 None:intergenic 35.0%
GATAGCTCCAATTAAGAATG+TGG + chr4_1:80574752-80574771 None:intergenic 35.0%
! TCCTTCCTTTTCATCTTAAC+TGG - chr4_1:80574790-80574809 Msa0576490:CDS 35.0%
ACCAGTTAAGATGAAAAGGA+AGG + chr4_1:80574794-80574813 None:intergenic 35.0%
TTAACTGGTAGAATGATTGC+CGG - chr4_1:80574805-80574824 Msa0576490:CDS 35.0%
ATCACTCTTGGAATTCTCAT+TGG - chr4_1:80574928-80574947 Msa0576490:CDS 35.0%
ACAGATCTTCCTATAAACCT+TGG - chr4_1:80574973-80574992 Msa0576490:CDS 35.0%
ATCTTCCTATAAACCTTGGT+TGG - chr4_1:80574977-80574996 Msa0576490:CDS 35.0%
ATTCTCCAACCAAGGTTTAT+AGG + chr4_1:80574985-80575004 None:intergenic 35.0%
CCAAAAGCAATTAAAATCGC+AGG + chr4_1:80575030-80575049 None:intergenic 35.0%
!!! CCTGCGATTTTAATTGCTTT+TGG - chr4_1:80575027-80575046 Msa0576490:CDS 35.0%
AAGTGAAAGAAGAACACGTT+TGG + chr4_1:80575112-80575131 None:intergenic 35.0%
AACAAAAATGATTCGACCCA+TGG - chr4_1:80575180-80575199 Msa0576490:CDS 35.0%
ACAAAAATGATTCGACCCAT+GGG - chr4_1:80575181-80575200 Msa0576490:CDS 35.0%
!! CGTATGTTGATTTCTGCTAT+TGG - chr4_1:80575270-80575289 Msa0576490:CDS 35.0%
AATTTCTTCATGCAAGCATC+TGG - chr4_1:80575297-80575316 Msa0576490:CDS 35.0%
TGCCGTTATATATTACTCAC+CGG - chr4_1:80575326-80575345 Msa0576490:CDS 35.0%
CACGGTAAGAAAAAGCTATT+CGG - chr4_1:80575372-80575391 Msa0576490:CDS 35.0%
ATTTGGATAAATTTGGGAGG+CGG - chr4_1:80575451-80575470 Msa0576490:CDS 35.0%
TTTGGGCTCAAAAATTCTAG+AGG - chr4_1:80575527-80575546 Msa0576490:CDS 35.0%
TTGGGCTCAAAAATTCTAGA+GGG - chr4_1:80575528-80575547 Msa0576490:CDS 35.0%
! CTCAAAAATTCTAGAGGGTT+CGG - chr4_1:80575533-80575552 Msa0576490:CDS 35.0%
! TCAAAAATTCTAGAGGGTTC+GGG - chr4_1:80575534-80575553 Msa0576490:CDS 35.0%
GACGAATAAACCCAAGTAAT+AGG + chr4_1:80575636-80575655 None:intergenic 35.0%
! TCGAAGAAGATAACTTTTGG+GGG - chr4_1:80575756-80575775 Msa0576490:intron 35.0%
TTCTTCTAATGTCTTGCCTT+TGG + chr4_1:80575850-80575869 None:intergenic 35.0%
AGGCAAGACATTAGAAGAAA+TGG - chr4_1:80575851-80575870 Msa0576490:CDS 35.0%
TTTAGGGGAAGAAAATGTGT+TGG - chr4_1:80575964-80575983 Msa0576490:intron 35.0%
! TGAGATACAGTTACTGGTTA+TGG + chr4_1:80574159-80574178 None:intergenic 35.0%
GATAGCTCCAATTAAGAATG+TGG + chr4_1:80574752-80574771 None:intergenic 35.0%
! TCCTTCCTTTTCATCTTAAC+TGG - chr4_1:80574790-80574809 Msa0576490:CDS 35.0%
ACCAGTTAAGATGAAAAGGA+AGG + chr4_1:80574794-80574813 None:intergenic 35.0%
TTAACTGGTAGAATGATTGC+CGG - chr4_1:80574805-80574824 Msa0576490:CDS 35.0%
ATCACTCTTGGAATTCTCAT+TGG - chr4_1:80574928-80574947 Msa0576490:CDS 35.0%
ACAGATCTTCCTATAAACCT+TGG - chr4_1:80574973-80574992 Msa0576490:CDS 35.0%
ATCTTCCTATAAACCTTGGT+TGG - chr4_1:80574977-80574996 Msa0576490:CDS 35.0%
ATTCTCCAACCAAGGTTTAT+AGG + chr4_1:80574985-80575004 None:intergenic 35.0%
CCAAAAGCAATTAAAATCGC+AGG + chr4_1:80575030-80575049 None:intergenic 35.0%
!!! CCTGCGATTTTAATTGCTTT+TGG - chr4_1:80575027-80575046 Msa0576490:CDS 35.0%
AAGTGAAAGAAGAACACGTT+TGG + chr4_1:80575112-80575131 None:intergenic 35.0%
AACAAAAATGATTCGACCCA+TGG - chr4_1:80575180-80575199 Msa0576490:CDS 35.0%
ACAAAAATGATTCGACCCAT+GGG - chr4_1:80575181-80575200 Msa0576490:CDS 35.0%
!! CGTATGTTGATTTCTGCTAT+TGG - chr4_1:80575270-80575289 Msa0576490:CDS 35.0%
AATTTCTTCATGCAAGCATC+TGG - chr4_1:80575297-80575316 Msa0576490:CDS 35.0%
TGCCGTTATATATTACTCAC+CGG - chr4_1:80575326-80575345 Msa0576490:CDS 35.0%
CACGGTAAGAAAAAGCTATT+CGG - chr4_1:80575372-80575391 Msa0576490:CDS 35.0%
ATTTGGATAAATTTGGGAGG+CGG - chr4_1:80575451-80575470 Msa0576490:CDS 35.0%
TTTGGGCTCAAAAATTCTAG+AGG - chr4_1:80575527-80575546 Msa0576490:CDS 35.0%
TTGGGCTCAAAAATTCTAGA+GGG - chr4_1:80575528-80575547 Msa0576490:CDS 35.0%
! CTCAAAAATTCTAGAGGGTT+CGG - chr4_1:80575533-80575552 Msa0576490:CDS 35.0%
! TCAAAAATTCTAGAGGGTTC+GGG - chr4_1:80575534-80575553 Msa0576490:CDS 35.0%
GACGAATAAACCCAAGTAAT+AGG + chr4_1:80575636-80575655 None:intergenic 35.0%
! TCGAAGAAGATAACTTTTGG+GGG - chr4_1:80575756-80575775 Msa0576490:intron 35.0%
TTCTTCTAATGTCTTGCCTT+TGG + chr4_1:80575850-80575869 None:intergenic 35.0%
AGGCAAGACATTAGAAGAAA+TGG - chr4_1:80575851-80575870 Msa0576490:CDS 35.0%
TTTAGGGGAAGAAAATGTGT+TGG - chr4_1:80575964-80575983 Msa0576490:intron 35.0%
GAGCATATGCATGGTTTCTT+TGG - chr4_1:80573975-80573994 Msa0576490:CDS 40.0%
GACTTGTGAGATACAGTTAC+TGG + chr4_1:80574165-80574184 None:intergenic 40.0%
TTCGACCACTCTATCTTCTT+TGG - chr4_1:80574219-80574238 Msa0576490:intron 40.0%
GGATTCCAAAGAAGATAGAG+TGG + chr4_1:80574227-80574246 None:intergenic 40.0%
GTATCTGTTGATGCGAATTG+AGG + chr4_1:80574380-80574399 None:intergenic 40.0%
GCAGATATTGGAGTTATGAG+TGG - chr4_1:80574571-80574590 Msa0576490:CDS 40.0%
CTCAACGTGTGTTCCTTAAT+CGG - chr4_1:80574661-80574680 Msa0576490:CDS 40.0%
CATGATTTCGCCTCTCTATA+CGG - chr4_1:80574849-80574868 Msa0576490:CDS 40.0%
CCAAGAGTGATGAATACTTC+AGG + chr4_1:80574919-80574938 None:intergenic 40.0%
! CCTGAAGTATTCATCACTCT+TGG - chr4_1:80574916-80574935 Msa0576490:CDS 40.0%
GAGAATCATGCTTGCGATTT+CGG - chr4_1:80574999-80575018 Msa0576490:CDS 40.0%
TTATGCCTGAATCTCCTCAT+TGG - chr4_1:80575058-80575077 Msa0576490:CDS 40.0%
! CCTTTGAAAACAAGCCAATG+AGG + chr4_1:80575075-80575094 None:intergenic 40.0%
!!! CCTCATTGGCTTGTTTTCAA+AGG - chr4_1:80575072-80575091 Msa0576490:CDS 40.0%
! ATTGGAATGGTCAAGGTGTT+TGG - chr4_1:80575211-80575230 Msa0576490:CDS 40.0%
!! CCAGCAGCTTTAAAAACTTC+CGG + chr4_1:80575348-80575367 None:intergenic 40.0%
!!! CGGAAGTTTTTAAAGCTGCT+GGG - chr4_1:80575346-80575365 Msa0576490:CDS 40.0%
! TTTAAAGCTGCTGGGATTCA+CGG - chr4_1:80575354-80575373 Msa0576490:CDS 40.0%
AACGACCCAATCAACAAAAG+AGG + chr4_1:80575477-80575496 None:intergenic 40.0%
!! CTTTTGTTGATTGGGTCGTT+TGG - chr4_1:80575477-80575496 Msa0576490:CDS 40.0%
! CAAAAATTCTAGAGGGTTCG+GGG - chr4_1:80575535-80575554 Msa0576490:CDS 40.0%
! TCGTTCTTTTCTATTGGGCT+TGG - chr4_1:80575609-80575628 Msa0576490:CDS 40.0%
! CGTTCTTTTCTATTGGGCTT+GGG - chr4_1:80575610-80575629 Msa0576490:CDS 40.0%
TGCAATTTCAGTGAATCGGT+TGG - chr4_1:80575698-80575717 Msa0576490:intron 40.0%
!! CTTTGTGTTGGCAGGAATTT+TGG - chr4_1:80575785-80575804 Msa0576490:intron 40.0%
GTTTGTATACCAGAGACCAA+AGG - chr4_1:80575831-80575850 Msa0576490:CDS 40.0%
AAACAGGGTAGTCACGATAA+GGG - chr4_1:80575924-80575943 Msa0576490:intron 40.0%
!! TGTGGAAAAAGGAGGTGTTT+AGG - chr4_1:80575947-80575966 Msa0576490:intron 40.0%
!! GTGGAAAAAGGAGGTGTTTA+GGG - chr4_1:80575948-80575967 Msa0576490:intron 40.0%
!! TGGAAAAAGGAGGTGTTTAG+GGG - chr4_1:80575949-80575968 Msa0576490:intron 40.0%
GCTAGACCAAACTGTATTTG+TGG - chr4_1:80576091-80576110 Msa0576490:intron 40.0%
CTACCAATGTTATGAGAAGG+TGG - chr4_1:80576144-80576163 Msa0576490:intron 40.0%
ATGCCACCTTCTCATAACAT+TGG + chr4_1:80576150-80576169 None:intergenic 40.0%
GAGCATATGCATGGTTTCTT+TGG - chr4_1:80573975-80573994 Msa0576490:CDS 40.0%
GACTTGTGAGATACAGTTAC+TGG + chr4_1:80574165-80574184 None:intergenic 40.0%
TTCGACCACTCTATCTTCTT+TGG - chr4_1:80574219-80574238 Msa0576490:intron 40.0%
GGATTCCAAAGAAGATAGAG+TGG + chr4_1:80574227-80574246 None:intergenic 40.0%
GTATCTGTTGATGCGAATTG+AGG + chr4_1:80574380-80574399 None:intergenic 40.0%
GCAGATATTGGAGTTATGAG+TGG - chr4_1:80574571-80574590 Msa0576490:CDS 40.0%
CTCAACGTGTGTTCCTTAAT+CGG - chr4_1:80574661-80574680 Msa0576490:CDS 40.0%
CATGATTTCGCCTCTCTATA+CGG - chr4_1:80574849-80574868 Msa0576490:CDS 40.0%
CCAAGAGTGATGAATACTTC+AGG + chr4_1:80574919-80574938 None:intergenic 40.0%
! CCTGAAGTATTCATCACTCT+TGG - chr4_1:80574916-80574935 Msa0576490:CDS 40.0%
GAGAATCATGCTTGCGATTT+CGG - chr4_1:80574999-80575018 Msa0576490:CDS 40.0%
TTATGCCTGAATCTCCTCAT+TGG - chr4_1:80575058-80575077 Msa0576490:CDS 40.0%
! CCTTTGAAAACAAGCCAATG+AGG + chr4_1:80575075-80575094 None:intergenic 40.0%
!!! CCTCATTGGCTTGTTTTCAA+AGG - chr4_1:80575072-80575091 Msa0576490:CDS 40.0%
! ATTGGAATGGTCAAGGTGTT+TGG - chr4_1:80575211-80575230 Msa0576490:CDS 40.0%
!! CCAGCAGCTTTAAAAACTTC+CGG + chr4_1:80575348-80575367 None:intergenic 40.0%
!!! CGGAAGTTTTTAAAGCTGCT+GGG - chr4_1:80575346-80575365 Msa0576490:CDS 40.0%
! TTTAAAGCTGCTGGGATTCA+CGG - chr4_1:80575354-80575373 Msa0576490:CDS 40.0%
AACGACCCAATCAACAAAAG+AGG + chr4_1:80575477-80575496 None:intergenic 40.0%
!! CTTTTGTTGATTGGGTCGTT+TGG - chr4_1:80575477-80575496 Msa0576490:CDS 40.0%
! CAAAAATTCTAGAGGGTTCG+GGG - chr4_1:80575535-80575554 Msa0576490:CDS 40.0%
! TCGTTCTTTTCTATTGGGCT+TGG - chr4_1:80575609-80575628 Msa0576490:CDS 40.0%
! CGTTCTTTTCTATTGGGCTT+GGG - chr4_1:80575610-80575629 Msa0576490:CDS 40.0%
TGCAATTTCAGTGAATCGGT+TGG - chr4_1:80575698-80575717 Msa0576490:intron 40.0%
!! CTTTGTGTTGGCAGGAATTT+TGG - chr4_1:80575785-80575804 Msa0576490:intron 40.0%
GTTTGTATACCAGAGACCAA+AGG - chr4_1:80575831-80575850 Msa0576490:CDS 40.0%
AAACAGGGTAGTCACGATAA+GGG - chr4_1:80575924-80575943 Msa0576490:intron 40.0%
!! TGTGGAAAAAGGAGGTGTTT+AGG - chr4_1:80575947-80575966 Msa0576490:intron 40.0%
!! GTGGAAAAAGGAGGTGTTTA+GGG - chr4_1:80575948-80575967 Msa0576490:intron 40.0%
!! TGGAAAAAGGAGGTGTTTAG+GGG - chr4_1:80575949-80575968 Msa0576490:intron 40.0%
GCTAGACCAAACTGTATTTG+TGG - chr4_1:80576091-80576110 Msa0576490:intron 40.0%
CTACCAATGTTATGAGAAGG+TGG - chr4_1:80576144-80576163 Msa0576490:intron 40.0%
ATGCCACCTTCTCATAACAT+TGG + chr4_1:80576150-80576169 None:intergenic 40.0%
ATGCATATGCTCTGCAACCA+CGG + chr4_1:80573967-80573986 None:intergenic 45.0%
TCTCCTCAGTGACGCAAAAA+TGG - chr4_1:80574330-80574349 Msa0576490:CDS 45.0%
!! AGTCCATTTTTGCGTCACTG+AGG + chr4_1:80574336-80574355 None:intergenic 45.0%
! GACGCAAAAATGGACTCCAA+CGG - chr4_1:80574340-80574359 Msa0576490:CDS 45.0%
! GGCATTTTCTTCTTTGCCGT+TGG + chr4_1:80574359-80574378 None:intergenic 45.0%
! TTGACGAGAAAAGAGCACAG+AGG + chr4_1:80574408-80574427 None:intergenic 45.0%
TCAACCAACTCCATTCTCCT+CGG - chr4_1:80574424-80574443 Msa0576490:CDS 45.0%
CGATTAAGGAACACACGTTG+AGG + chr4_1:80574663-80574682 None:intergenic 45.0%
AGAGGCTAGTGATCCGATTA+AGG + chr4_1:80574677-80574696 None:intergenic 45.0%
! TTAATCGGATCACTAGCCTC+TGG - chr4_1:80574676-80574695 Msa0576490:CDS 45.0%
GCAGCAGCCACATTCTTAAT+TGG - chr4_1:80574742-80574761 Msa0576490:CDS 45.0%
ATACTTCAGGAAGCGAAGTG+AGG + chr4_1:80574906-80574925 None:intergenic 45.0%
CAAGCATGATTCTCCAACCA+AGG + chr4_1:80574993-80575012 None:intergenic 45.0%
ACAAGCCAATGAGGAGATTC+AGG + chr4_1:80575066-80575085 None:intergenic 45.0%
CTCCAGAAGAAGCTGAACTA+AGG - chr4_1:80575139-80575158 Msa0576490:CDS 45.0%
AGCCTTAGTTCAGCTTCTTC+TGG + chr4_1:80575144-80575163 None:intergenic 45.0%
ATTCCAATTTCCAGGCCCAT+GGG + chr4_1:80575199-80575218 None:intergenic 45.0%
CCTTGACCATTCCAATTTCC+AGG + chr4_1:80575207-80575226 None:intergenic 45.0%
CCTGGAAATTGGAATGGTCA+AGG - chr4_1:80575204-80575223 Msa0576490:CDS 45.0%
!! ATACGCTTAATGGGCTTGCT+GGG + chr4_1:80575255-80575274 None:intergenic 45.0%
!!! CCGGAAGTTTTTAAAGCTGC+TGG - chr4_1:80575345-80575364 Msa0576490:CDS 45.0%
GTTGATTGGGTCGTTTGGTA+TGG - chr4_1:80575482-80575501 Msa0576490:CDS 45.0%
! GTATGGCTGTGTCGTTGTTT+GGG - chr4_1:80575499-80575518 Msa0576490:CDS 45.0%
! TCGTTGTTTGGGCTTGGTTT+GGG - chr4_1:80575510-80575529 Msa0576490:CDS 45.0%
! CGTCGGAGATTTTTCCTATG+AGG - chr4_1:80575652-80575671 Msa0576490:intron 45.0%
!! TCAGTGAATCGGTTGGTAAG+TGG - chr4_1:80575705-80575724 Msa0576490:intron 45.0%
TGGGGGAATGTTCTTTGTGT+TGG - chr4_1:80575773-80575792 Msa0576490:intron 45.0%
! GGAATGTTCTTTGTGTTGGC+AGG - chr4_1:80575777-80575796 Msa0576490:intron 45.0%
!! TGTGTTGGCAGGAATTTTGG+TGG - chr4_1:80575788-80575807 Msa0576490:CDS 45.0%
AATGTCTTGCCTTTGGTCTC+TGG + chr4_1:80575843-80575862 None:intergenic 45.0%
AATGGAAACTCTCTTCGTCG+AGG - chr4_1:80575869-80575888 Msa0576490:CDS 45.0%
GAAACAGGGTAGTCACGATA+AGG - chr4_1:80575923-80575942 Msa0576490:intron 45.0%
! CACGATAAGGGTGTGGAAAA+AGG - chr4_1:80575936-80575955 Msa0576490:intron 45.0%
! GATAAGGGTGTGGAAAAAGG+AGG - chr4_1:80575939-80575958 Msa0576490:intron 45.0%
CCGAAGCATGAGTCATATGA+GGG + chr4_1:80576221-80576240 None:intergenic 45.0%
CCCTCATATGACTCATGCTT+CGG - chr4_1:80576218-80576237 Msa0576490:CDS 45.0%
ACCGAAGCATGAGTCATATG+AGG + chr4_1:80576222-80576241 None:intergenic 45.0%
ATGCATATGCTCTGCAACCA+CGG + chr4_1:80573967-80573986 None:intergenic 45.0%
TCTCCTCAGTGACGCAAAAA+TGG - chr4_1:80574330-80574349 Msa0576490:CDS 45.0%
!! AGTCCATTTTTGCGTCACTG+AGG + chr4_1:80574336-80574355 None:intergenic 45.0%
! GACGCAAAAATGGACTCCAA+CGG - chr4_1:80574340-80574359 Msa0576490:CDS 45.0%
! GGCATTTTCTTCTTTGCCGT+TGG + chr4_1:80574359-80574378 None:intergenic 45.0%
! TTGACGAGAAAAGAGCACAG+AGG + chr4_1:80574408-80574427 None:intergenic 45.0%
TCAACCAACTCCATTCTCCT+CGG - chr4_1:80574424-80574443 Msa0576490:CDS 45.0%
CGATTAAGGAACACACGTTG+AGG + chr4_1:80574663-80574682 None:intergenic 45.0%
AGAGGCTAGTGATCCGATTA+AGG + chr4_1:80574677-80574696 None:intergenic 45.0%
! TTAATCGGATCACTAGCCTC+TGG - chr4_1:80574676-80574695 Msa0576490:CDS 45.0%
GCAGCAGCCACATTCTTAAT+TGG - chr4_1:80574742-80574761 Msa0576490:CDS 45.0%
ATACTTCAGGAAGCGAAGTG+AGG + chr4_1:80574906-80574925 None:intergenic 45.0%
CAAGCATGATTCTCCAACCA+AGG + chr4_1:80574993-80575012 None:intergenic 45.0%
ACAAGCCAATGAGGAGATTC+AGG + chr4_1:80575066-80575085 None:intergenic 45.0%
CTCCAGAAGAAGCTGAACTA+AGG - chr4_1:80575139-80575158 Msa0576490:CDS 45.0%
AGCCTTAGTTCAGCTTCTTC+TGG + chr4_1:80575144-80575163 None:intergenic 45.0%
ATTCCAATTTCCAGGCCCAT+GGG + chr4_1:80575199-80575218 None:intergenic 45.0%
CCTTGACCATTCCAATTTCC+AGG + chr4_1:80575207-80575226 None:intergenic 45.0%
CCTGGAAATTGGAATGGTCA+AGG - chr4_1:80575204-80575223 Msa0576490:CDS 45.0%
!! ATACGCTTAATGGGCTTGCT+GGG + chr4_1:80575255-80575274 None:intergenic 45.0%
!!! CCGGAAGTTTTTAAAGCTGC+TGG - chr4_1:80575345-80575364 Msa0576490:CDS 45.0%
GTTGATTGGGTCGTTTGGTA+TGG - chr4_1:80575482-80575501 Msa0576490:CDS 45.0%
! GTATGGCTGTGTCGTTGTTT+GGG - chr4_1:80575499-80575518 Msa0576490:CDS 45.0%
! TCGTTGTTTGGGCTTGGTTT+GGG - chr4_1:80575510-80575529 Msa0576490:CDS 45.0%
! CGTCGGAGATTTTTCCTATG+AGG - chr4_1:80575652-80575671 Msa0576490:intron 45.0%
!! TCAGTGAATCGGTTGGTAAG+TGG - chr4_1:80575705-80575724 Msa0576490:intron 45.0%
TGGGGGAATGTTCTTTGTGT+TGG - chr4_1:80575773-80575792 Msa0576490:intron 45.0%
! GGAATGTTCTTTGTGTTGGC+AGG - chr4_1:80575777-80575796 Msa0576490:intron 45.0%
!! TGTGTTGGCAGGAATTTTGG+TGG - chr4_1:80575788-80575807 Msa0576490:CDS 45.0%
AATGTCTTGCCTTTGGTCTC+TGG + chr4_1:80575843-80575862 None:intergenic 45.0%
AATGGAAACTCTCTTCGTCG+AGG - chr4_1:80575869-80575888 Msa0576490:CDS 45.0%
GAAACAGGGTAGTCACGATA+AGG - chr4_1:80575923-80575942 Msa0576490:intron 45.0%
! CACGATAAGGGTGTGGAAAA+AGG - chr4_1:80575936-80575955 Msa0576490:intron 45.0%
! GATAAGGGTGTGGAAAAAGG+AGG - chr4_1:80575939-80575958 Msa0576490:intron 45.0%
CCGAAGCATGAGTCATATGA+GGG + chr4_1:80576221-80576240 None:intergenic 45.0%
CCCTCATATGACTCATGCTT+CGG - chr4_1:80576218-80576237 Msa0576490:CDS 45.0%
ACCGAAGCATGAGTCATATG+AGG + chr4_1:80576222-80576241 None:intergenic 45.0%
GTGGTTGCAGAGCATATGCA+TGG - chr4_1:80573966-80573985 Msa0576490:CDS 50.0%
AACTCCATTCTCCTCGGCTA+CGG - chr4_1:80574430-80574449 Msa0576490:CDS 50.0%
GGCAAAACCTCCGACACAAT+CGG - chr4_1:80574697-80574716 Msa0576490:CDS 50.0%
GGTAGAATGATTGCCGGCAT+TGG - chr4_1:80574811-80574830 Msa0576490:CDS 50.0%
TGCATAACCAACGCCAATGC+CGG + chr4_1:80574827-80574846 None:intergenic 50.0%
GAGAGTTCTGCCGTATAGAG+AGG + chr4_1:80574862-80574881 None:intergenic 50.0%
CATTCCAATTTCCAGGCCCA+TGG + chr4_1:80575200-80575219 None:intergenic 50.0%
CATGGGCCTGGAAATTGGAA+TGG - chr4_1:80575198-80575217 Msa0576490:CDS 50.0%
!! CATACGCTTAATGGGCTTGC+TGG + chr4_1:80575256-80575275 None:intergenic 50.0%
! AGGCGGCCTCTTTTGTTGAT+TGG - chr4_1:80575468-80575487 Msa0576490:CDS 50.0%
!! GGCGGCCTCTTTTGTTGATT+GGG - chr4_1:80575469-80575488 Msa0576490:CDS 50.0%
! GGTATGGCTGTGTCGTTGTT+TGG - chr4_1:80575498-80575517 Msa0576490:CDS 50.0%
! GTCGTTGTTTGGGCTTGGTT+TGG - chr4_1:80575509-80575528 Msa0576490:CDS 50.0%
TTGGGCTTGGGCCTATTACT+TGG - chr4_1:80575622-80575641 Msa0576490:CDS 50.0%
TGGGCTTGGGCCTATTACTT+GGG - chr4_1:80575623-80575642 Msa0576490:CDS 50.0%
!! CCTTGAGCTCTAAGCCTCAT+AGG + chr4_1:80575669-80575688 None:intergenic 50.0%
CCTATGAGGCTTAGAGCTCA+AGG - chr4_1:80575666-80575685 Msa0576490:intron 50.0%
!! GAATCGGTTGGTAAGTGGAG+TGG - chr4_1:80575710-80575729 Msa0576490:intron 50.0%
!! GTTGGCAGGAATTTTGGTGG+TGG - chr4_1:80575791-80575810 Msa0576490:CDS 50.0%
!!! GGAATTTTGGTGGTGGCTAC+CGG - chr4_1:80575798-80575817 Msa0576490:CDS 50.0%
GTGGTTGCAGAGCATATGCA+TGG - chr4_1:80573966-80573985 Msa0576490:CDS 50.0%
AACTCCATTCTCCTCGGCTA+CGG - chr4_1:80574430-80574449 Msa0576490:CDS 50.0%
GGCAAAACCTCCGACACAAT+CGG - chr4_1:80574697-80574716 Msa0576490:CDS 50.0%
GGTAGAATGATTGCCGGCAT+TGG - chr4_1:80574811-80574830 Msa0576490:CDS 50.0%
TGCATAACCAACGCCAATGC+CGG + chr4_1:80574827-80574846 None:intergenic 50.0%
GAGAGTTCTGCCGTATAGAG+AGG + chr4_1:80574862-80574881 None:intergenic 50.0%
CATTCCAATTTCCAGGCCCA+TGG + chr4_1:80575200-80575219 None:intergenic 50.0%
CATGGGCCTGGAAATTGGAA+TGG - chr4_1:80575198-80575217 Msa0576490:CDS 50.0%
!! CATACGCTTAATGGGCTTGC+TGG + chr4_1:80575256-80575275 None:intergenic 50.0%
! AGGCGGCCTCTTTTGTTGAT+TGG - chr4_1:80575468-80575487 Msa0576490:CDS 50.0%
!! GGCGGCCTCTTTTGTTGATT+GGG - chr4_1:80575469-80575488 Msa0576490:CDS 50.0%
! GGTATGGCTGTGTCGTTGTT+TGG - chr4_1:80575498-80575517 Msa0576490:CDS 50.0%
! GTCGTTGTTTGGGCTTGGTT+TGG - chr4_1:80575509-80575528 Msa0576490:CDS 50.0%
TTGGGCTTGGGCCTATTACT+TGG - chr4_1:80575622-80575641 Msa0576490:CDS 50.0%
TGGGCTTGGGCCTATTACTT+GGG - chr4_1:80575623-80575642 Msa0576490:CDS 50.0%
!! CCTTGAGCTCTAAGCCTCAT+AGG + chr4_1:80575669-80575688 None:intergenic 50.0%
CCTATGAGGCTTAGAGCTCA+AGG - chr4_1:80575666-80575685 Msa0576490:intron 50.0%
!! GAATCGGTTGGTAAGTGGAG+TGG - chr4_1:80575710-80575729 Msa0576490:intron 50.0%
!! GTTGGCAGGAATTTTGGTGG+TGG - chr4_1:80575791-80575810 Msa0576490:CDS 50.0%
!!! GGAATTTTGGTGGTGGCTAC+CGG - chr4_1:80575798-80575817 Msa0576490:CDS 50.0%
ATGCTCTGCAACCACGGTCA+AGG + chr4_1:80573961-80573980 None:intergenic 55.0%
GTAGCCGAGGAGAATGGAGT+TGG + chr4_1:80574431-80574450 None:intergenic 55.0%
! TGTGTCGGAGGTTTTGCCAG+AGG + chr4_1:80574695-80574714 None:intergenic 55.0%
GTAGCGTCGTCCGATTGTGT+CGG + chr4_1:80574710-80574729 None:intergenic 55.0%
!! ATGATTGCCGGCATTGGCGT+TGG - chr4_1:80574817-80574836 Msa0576490:CDS 55.0%
AGGAAACCACGTGTGGTGGT+GGG + chr4_1:80574886-80574905 None:intergenic 55.0%
AGTGAGGAAACCACGTGTGG+TGG + chr4_1:80574890-80574909 None:intergenic 55.0%
CGAAGTGAGGAAACCACGTG+TGG + chr4_1:80574893-80574912 None:intergenic 55.0%
AATGATTCGACCCATGGGCC+TGG - chr4_1:80575186-80575205 Msa0576490:CDS 55.0%
! GCTGTGTCGTTGTTTGGGCT+TGG - chr4_1:80575504-80575523 Msa0576490:CDS 55.0%
GAAGCCTGTTTGGGCTGTTG+TGG - chr4_1:80575557-80575576 Msa0576490:CDS 55.0%
CACACCACAACAGCCCAAAC+AGG + chr4_1:80575564-80575583 None:intergenic 55.0%
GGCTGTTGTGGTGTGCATTG+TGG - chr4_1:80575569-80575588 Msa0576490:CDS 55.0%
GGGTAGTCACGATAAGGGTG+TGG - chr4_1:80575929-80575948 Msa0576490:intron 55.0%
ATGCTCTGCAACCACGGTCA+AGG + chr4_1:80573961-80573980 None:intergenic 55.0%
GTAGCCGAGGAGAATGGAGT+TGG + chr4_1:80574431-80574450 None:intergenic 55.0%
! TGTGTCGGAGGTTTTGCCAG+AGG + chr4_1:80574695-80574714 None:intergenic 55.0%
GTAGCGTCGTCCGATTGTGT+CGG + chr4_1:80574710-80574729 None:intergenic 55.0%
!! ATGATTGCCGGCATTGGCGT+TGG - chr4_1:80574817-80574836 Msa0576490:CDS 55.0%
AGGAAACCACGTGTGGTGGT+GGG + chr4_1:80574886-80574905 None:intergenic 55.0%
AGTGAGGAAACCACGTGTGG+TGG + chr4_1:80574890-80574909 None:intergenic 55.0%
CGAAGTGAGGAAACCACGTG+TGG + chr4_1:80574893-80574912 None:intergenic 55.0%
AATGATTCGACCCATGGGCC+TGG - chr4_1:80575186-80575205 Msa0576490:CDS 55.0%
! GCTGTGTCGTTGTTTGGGCT+TGG - chr4_1:80575504-80575523 Msa0576490:CDS 55.0%
GAAGCCTGTTTGGGCTGTTG+TGG - chr4_1:80575557-80575576 Msa0576490:CDS 55.0%
CACACCACAACAGCCCAAAC+AGG + chr4_1:80575564-80575583 None:intergenic 55.0%
GGCTGTTGTGGTGTGCATTG+TGG - chr4_1:80575569-80575588 Msa0576490:CDS 55.0%
GGGTAGTCACGATAAGGGTG+TGG - chr4_1:80575929-80575948 Msa0576490:intron 55.0%
GTGACCGTAGCCGAGGAGAA+TGG + chr4_1:80574437-80574456 None:intergenic 60.0%
AGTGTGAGTGACCGTAGCCG+AGG + chr4_1:80574444-80574463 None:intergenic 60.0%
!! GAAACCACGTGTGGTGGTGG+GGG + chr4_1:80574884-80574903 None:intergenic 60.0%
! GGAAACCACGTGTGGTGGTG+GGG + chr4_1:80574885-80574904 None:intergenic 60.0%
GAGGAAACCACGTGTGGTGG+TGG + chr4_1:80574887-80574906 None:intergenic 60.0%
CGACCCATGGGCCTGGAAAT+TGG - chr4_1:80575193-80575212 Msa0576490:CDS 60.0%
AGGGTTCGGGGAAGCCTGTT+TGG - chr4_1:80575547-80575566 Msa0576490:CDS 60.0%
GGGTTCGGGGAAGCCTGTTT+GGG - chr4_1:80575548-80575567 Msa0576490:CDS 60.0%
GTGACCGTAGCCGAGGAGAA+TGG + chr4_1:80574437-80574456 None:intergenic 60.0%
AGTGTGAGTGACCGTAGCCG+AGG + chr4_1:80574444-80574463 None:intergenic 60.0%
!! GAAACCACGTGTGGTGGTGG+GGG + chr4_1:80574884-80574903 None:intergenic 60.0%
! GGAAACCACGTGTGGTGGTG+GGG + chr4_1:80574885-80574904 None:intergenic 60.0%
GAGGAAACCACGTGTGGTGG+TGG + chr4_1:80574887-80574906 None:intergenic 60.0%
CGACCCATGGGCCTGGAAAT+TGG - chr4_1:80575193-80575212 Msa0576490:CDS 60.0%
AGGGTTCGGGGAAGCCTGTT+TGG - chr4_1:80575547-80575566 Msa0576490:CDS 60.0%
GGGTTCGGGGAAGCCTGTTT+GGG - chr4_1:80575548-80575567 Msa0576490:CDS 60.0%
GCGTCGTCCGATTGTGTCGG+AGG + chr4_1:80574707-80574726 None:intergenic 65.0%
GCGTCGTCCGATTGTGTCGG+AGG + chr4_1:80574707-80574726 None:intergenic 65.0%
CTCTCCCCCACCACCACACG+TGG - chr4_1:80574877-80574896 Msa0576490:CDS 70.0%
CTCTCCCCCACCACCACACG+TGG - chr4_1:80574877-80574896 Msa0576490:CDS 70.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 80573952 80576287 80573952 ID=Msa0576490;Name=Msa0576490
chr4_1 mRNA 80573952 80576287 80573952 ID=Msa0576490-mRNA-1;Parent=Msa0576490;Name=Msa0576490-mRNA-1;_AED=0.04;_eAED=0.04;_QI=29|0.33|0.25|1|0.33|0.25|4|0|559
chr4_1 exon 80573952 80574037 80573952 ID=Msa0576490-mRNA-1:exon:28848;Parent=Msa0576490-mRNA-1
chr4_1 exon 80574279 80575664 80574279 ID=Msa0576490-mRNA-1:exon:28847;Parent=Msa0576490-mRNA-1
chr4_1 exon 80575788 80575928 80575788 ID=Msa0576490-mRNA-1:exon:28846;Parent=Msa0576490-mRNA-1
chr4_1 exon 80576192 80576287 80576192 ID=Msa0576490-mRNA-1:exon:28845;Parent=Msa0576490-mRNA-1
chr4_1 five_prime_UTR 80576259 80576287 80576259 ID=Msa0576490-mRNA-1:five_prime_utr;Parent=Msa0576490-mRNA-1
chr4_1 CDS 80576192 80576258 80576192 ID=Msa0576490-mRNA-1:cds;Parent=Msa0576490-mRNA-1
chr4_1 CDS 80575788 80575928 80575788 ID=Msa0576490-mRNA-1:cds;Parent=Msa0576490-mRNA-1
chr4_1 CDS 80574279 80575664 80574279 ID=Msa0576490-mRNA-1:cds;Parent=Msa0576490-mRNA-1
chr4_1 CDS 80573952 80574037 80573952 ID=Msa0576490-mRNA-1:cds;Parent=Msa0576490-mRNA-1
Gene Sequence

>Msa0576490

ATGCATGGTTTCTTTGGCTCTTTTCAGTTTTCACTATACTGCATTAACAAACGACCTATAATTTCAGTTTCATTCAACAGTTTCAATCTCCTCAGTGACGCAAAAATGGACTCCAACGGCAAAGAAGAAAATGCCTCAATTCGCATCAACAGATACACACTCCTCTGTGCTCTTTTCTCGTCAACCAACTCCATTCTCCTCGGCTACGATATTGGAGTTATGAGTGGAGCAAGCATGTTGATAAAAGAAAATCTAAAAATCTCACGAATTCAACAAGAAATACTGGTAGGCAGCCTCAACGTGTGTTCCTTAATCGGATCACTAGCCTCTGGCAAAACCTCCGACACAATCGGACGACGCTACACAATCGTCTTAGCAGCAGCCACATTCTTAATTGGAGCTATCTTCATGTCACTTGCACATTCCTTCCTTTTCATCTTAACTGGTAGAATGATTGCCGGCATTGGCGTTGGTTATGCACTCATGATTTCGCCTCTCTATACGGCAGAACTCTCCCCCACCACCACACGTGGTTTCCTCACTTCGCTTCCTGAAGTATTCATCACTCTTGGAATTCTCATTGGTTATGTTATCAACTACGCTTTAACAGATCTTCCTATAAACCTTGGTTGGAGAATCATGCTTGCGATTTCGGCTCTACCTGCGATTTTAATTGCTTTTGGTGTTATTTTTATGCCTGAATCTCCTCATTGGCTTGTTTTCAAAGGAAGAGTTTCTGAAGCCAAACGTGTTCTTCTTTCACTTTCAACTACTCCAGAAGAAGCTGAACTAAGGCTTCAAGAAATAGTAACAAACAAAAATGATTCGACCCATGGGCCTGGAAATTGGAATGGTCAAGGTGTTTGGAAAGAGCTTTTTTTAAGGCCCAGCAAGCCCATTAAGCGTATGTTGATTTCTGCTATTGGGATTAATTTCTTCATGCAAGCATCTGGAAACGATGCCGTTATATATTACTCACCGGAAGTTTTTAAAGCTGCTGGGATTCACGGTAAGAAAAAGCTATTCGGAGTTAATGTGATTATGGGCTTGTCAAAGAGTTTTTTTTTTTTTCTTTCGGCGATTTATTTGGATAAATTTGGGAGGCGGCCTCTTTTGTTGATTGGGTCGTTTGGTATGGCTGTGTCGTTGTTTGGGCTTGGTTTGGGCTCAAAAATTCTAGAGGGTTCGGGGAAGCCTGTTTGGGCTGTTGTGGTGTGCATTGTGGCTGTTTGCGCTGATGTTTCGTTCTTTTCTATTGGGCTTGGGCCTATTACTTGGGTTTATTCGTCGGAGATTTTTCCTATGAGGCTTAGAGCTCAAGGTTCGAGTATTGCAATTTCAGTGAATCGGTTGGTAAGTGGAGTGGTGTCTATGACGTTCTTGAGCATTTCGAAGAAGATAACTTTTGGGGGAATGTTCTTTGTGTTGGCAGGAATTTTGGTGGTGGCTACCGGTTTCTTTTATGTTTGTATACCAGAGACCAAAGGCAAGACATTAGAAGAAATGGAAACTCTCTTCGTCGAGGATGATGATGATAATAATAACAATAGTAATGAGAAACAGGGTAGTCACGATAAGGGTGTGGAAAAAGGAGGTCTCATTGCAGTTCGCCCTCATATGACTCATGCTTCGGTGCTTGTAGATCTACATCGTTTTTTTTTTCCGGTGCTTGTAATCTAA
Protein sequence

>Msa0576490

MHGFFGSFQFSLYCINKRPIISVSFNSFNLLSDAKMDSNGKEENASIRINRYTLLCALFSSTNSILLGYDIGVMSGASMLIKENLKISRIQQEILVGSLNVCSLIGSLASGKTSDTIGRRYTIVLAAATFLIGAIFMSLAHSFLFILTGRMIAGIGVGYALMISPLYTAELSPTTTRGFLTSLPEVFITLGILIGYVINYALTDLPINLGWRIMLAISALPAILIAFGVIFMPESPHWLVFKGRVSEAKRVLLSLSTTPEEAELRLQEIVTNKNDSTHGPGNWNGQGVWKELFLRPSKPIKRMLISAIGINFFMQASGNDAVIYYSPEVFKAAGIHGKKKLFGVNVIMGLSKSFFFFLSAIYLDKFGRRPLLLIGSFGMAVSLFGLGLGSKILEGSGKPVWAVVVCIVAVCADVSFFSIGLGPITWVYSSEIFPMRLRAQGSSIAISVNRLVSGVVSMTFLSISKKITFGGMFFVLAGILVVATGFFYVCIPETKGKTLEEMETLFVEDDDDNNNNSNEKQGSHDKGVEKGGLIAVRPHMTHASVLVDLHRFFFPVLVI*