AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0103060


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0103060 MtrunA17_Chr1g0146481 96.383 553 16 2 1 553 1 549 0.0 1103
Msa0103060 MtrunA17_Chr3g0145921 34.247 292 185 2 266 551 280 570 6.93e-57 200
Msa0103060 MtrunA17_Chr1g0180881 30.247 324 212 3 236 553 244 559 3.48e-45 167
Msa0103060 MtrunA17_Chr7g0264491 30.719 306 205 2 254 553 251 555 6.82e-43 161
Msa0103060 MtrunA17_Chr3g0090001 34.177 237 149 2 321 551 167 402 1.27e-34 135
Msa0103060 MtrunA17_Chr4g0021031 28.322 286 190 5 267 540 208 490 2.79e-23 103
Msa0103060 MtrunA17_Chr3g0126401 26.336 262 179 6 300 551 256 513 3.01e-17 84.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0103060 AT3G53920.1 44.123 519 238 10 54 552 84 570 3.62e-131 394
Msa0103060 AT3G53920.2 42.458 358 162 7 54 398 84 410 4.71e-74 241
Msa0103060 AT1G08540.1 34.983 303 190 3 255 551 267 568 3.01e-60 209
Msa0103060 AT2G36990.1 30.328 366 231 5 205 553 187 545 4.73e-47 173
Msa0103060 AT5G13730.1 35.154 293 176 4 266 550 128 414 2.71e-43 160
Msa0103060 AT1G64860.1 28.854 253 159 5 310 547 249 495 2.35e-23 103
Msa0103060 AT1G64860.2 29.048 210 130 4 310 504 249 454 2.48e-20 94.7
Msa0103060 AT5G24120.1 25.794 252 173 6 310 551 269 516 2.82e-16 82.4
Msa0103060 AT5G24120.3 25.794 252 173 6 310 551 269 516 2.82e-16 82.4
Msa0103060 AT5G24120.2 25.794 252 173 6 310 551 269 516 2.82e-16 82.4

Find 114 sgRNAs with CRISPR-Local

Find 339 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAAGACCTTCCGTGCTTTC+TGG 0.088168 1_3:-10090736 None:intergenic
CTCAAAGTTGAATTATTATT+TGG 0.140183 1_3:+10092108 Msa0103060:CDS
ATCACATTTCGGTTTGTTAA+TGG 0.244701 1_3:+10088177 Msa0103060:CDS
TCATCTTCATCTTCATCTTC+TGG 0.252075 1_3:+10086858 Msa0103060:CDS
TGGAACATAGAATAAAATTA+TGG 0.257183 1_3:+10086731 Msa0103060:exon
CTTTGCAATTTCAAGATCAT+TGG 0.280476 1_3:-10090780 None:intergenic
AACTTTGCACAACACTTTCA+TGG 0.296207 1_3:+10086711 Msa0103060:five_prime_UTR
AAGATCATTGGGATATTTCA+TGG 0.329371 1_3:-10090768 None:intergenic
CTGTATAGTCATCTACTTTG+TGG 0.330993 1_3:-10088393 None:intergenic
CCCAAGTCTCTTGAATATAT+AGG 0.337893 1_3:+10092004 Msa0103060:CDS
CCAAGTCTCTTGAATATATA+GGG 0.343015 1_3:+10092005 Msa0103060:CDS
TTTCCTTTCTCTTGCTAGAA+TGG 0.344400 1_3:-10088429 None:intergenic
ATCTGTATATGGGGATTATG+AGG 0.355598 1_3:+10092184 Msa0103060:three_prime_UTR
AAAATTATGGGTCTCTGCTT+TGG 0.357478 1_3:+10086744 Msa0103060:exon
TGAAAGTGTTGTGCAAAGTT+TGG 0.366162 1_3:-10086708 None:intergenic
TGTTTCATGACAGTCTCTTC+AGG 0.370634 1_3:-10091884 None:intergenic
GAAAGTGTTGTGCAAAGTTT+GGG 0.373824 1_3:-10086707 None:intergenic
AGTAGCTGGGCAGAAGCATC+TGG 0.382458 1_3:+10088784 Msa0103060:CDS
AAGGAGAAGAGTGGTGAAGA+GGG 0.387482 1_3:-10086803 None:intergenic
TTGGATCTGTAGTTTATCAT+TGG 0.388384 1_3:+10092127 Msa0103060:exon
TATACTTTGCTAGAAAATAC+AGG 0.389187 1_3:+10088893 Msa0103060:CDS
TTTCCCTTGAGTCCAAGCTT+TGG 0.389465 1_3:-10091937 None:intergenic
ATTTCATAGGTAGGATATAT+AGG 0.391468 1_3:+10090451 Msa0103060:intron
AAGTGGTAAGCTTGAGTAGC+TGG 0.392151 1_3:+10088770 Msa0103060:CDS
CCCTATATATTCAAGAGACT+TGG 0.394252 1_3:-10092005 None:intergenic
AGCTTTGGAAGATTTGCTTC+AGG 0.398464 1_3:+10088927 Msa0103060:CDS
GTTTGTCTAACAACATCTTT+CGG 0.411275 1_3:+10088307 Msa0103060:CDS
TTTGCAATTTCAAGATCATT+GGG 0.411874 1_3:-10090779 None:intergenic
AGGACTCTCTATCGACAAAT+CGG 0.413081 1_3:-10091864 None:intergenic
CAGGGGTATGGGAATAGCTT+TGG 0.414935 1_3:+10088912 Msa0103060:CDS
GGAACATAGAATAAAATTAT+GGG 0.424788 1_3:+10086732 Msa0103060:exon
CCGAAATGTGATTCCTCAAA+AGG 0.428593 1_3:-10088166 None:intergenic
TGCTAGAAAATACAGGGGTA+TGG 0.433372 1_3:+10088900 Msa0103060:CDS
CCTATGTGCAGTACTGGATA+AGG 0.435511 1_3:+10090527 Msa0103060:CDS
ATCATCAGCATTGGAGGCTC+CGG 0.440166 1_3:+10087805 Msa0103060:CDS
TCTTCTTGATTATCGTCTAA+AGG 0.440788 1_3:-10088505 None:intergenic
TTTGCTTTCAACAATTTATG+AGG 0.443404 1_3:+10087736 Msa0103060:CDS
TCTAGCAAAGTATAGAACTA+AGG 0.459983 1_3:-10088884 None:intergenic
ACAGTGCATTCAATAAACTT+TGG 0.463416 1_3:-10092227 None:intergenic
TGAAGATGAAGATGAAGAAG+AGG 0.464142 1_3:-10086850 None:intergenic
CCCTTGAGTCCAAGCTTTGG+AGG 0.467981 1_3:-10091934 None:intergenic
TGTCCATTCTAGCAAGAGAA+AGG 0.469422 1_3:+10088426 Msa0103060:CDS
TGTCAAATCGCTCTGCTCCT+TGG 0.471889 1_3:-10090480 None:intergenic
GAAAATAGAAGAAGAAAGAG+AGG 0.479685 1_3:+10088448 Msa0103060:CDS
TTCAGGTAAATAAAGGAAAG+AGG 0.481787 1_3:+10088101 Msa0103060:intron
AATGTGACGTAGCTGGAGGC+AGG 0.486847 1_3:+10087684 Msa0103060:intron
GTATCGCGGCATTGAATACA+TGG 0.488890 1_3:+10090868 Msa0103060:CDS
TCTCAACCTATGTGCAGTAC+TGG 0.489155 1_3:+10090521 Msa0103060:CDS
AAGTTAGCAAAGAATGGATA+AGG 0.493553 1_3:+10092038 Msa0103060:CDS
TCCTCCAAAGCTTGGACTCA+AGG 0.494978 1_3:+10091933 Msa0103060:CDS
AAAGGAGAAGAGTGGTGAAG+AGG 0.495785 1_3:-10086804 None:intergenic
AAGAGCGGTGATTGCTCAAA+GGG 0.498014 1_3:+10088585 Msa0103060:CDS
GGAAATGTCAAAAGGTGTAA+AGG 0.501027 1_3:+10088612 Msa0103060:CDS
AAGAAACTGTTCTTAGACAA+TGG 0.501314 1_3:-10090841 None:intergenic
ACATGATATCCTCCAAAGCT+TGG 0.510778 1_3:+10091925 Msa0103060:CDS
CTTTCAACAATTTATGAGGA+AGG 0.515733 1_3:+10087740 Msa0103060:CDS
CTTGAAATTGCAAAGATGAC+AGG 0.516829 1_3:+10090788 Msa0103060:CDS
AAGGAAATCAATGTCAAGAA+TGG 0.518039 1_3:+10090546 Msa0103060:CDS
GCTAGAAAATACAGGGGTAT+GGG 0.518577 1_3:+10088901 Msa0103060:CDS
ATATGTGAATGAGTGAAGAA+AGG 0.520286 1_3:-10086822 None:intergenic
TTGCAAGGGAGATGAAGAAC+TGG 0.521191 1_3:+10086621 None:intergenic
CTACAACAGCAACTGTATCA+TGG 0.521397 1_3:+10088823 Msa0103060:CDS
CCTATATATTCAAGAGACTT+GGG 0.523071 1_3:-10092004 None:intergenic
AGCATCTGGAGTTGACGAAA+AGG 0.525544 1_3:+10088798 Msa0103060:CDS
AGATCCATTACGTTCTTCAC+CGG 0.526005 1_3:+10088525 Msa0103060:CDS
CCTCCAAAGCTTGGACTCAA+GGG 0.531320 1_3:+10091934 Msa0103060:CDS
GGATCGAGAGGAAGGTGCTA+TGG 0.531414 1_3:-10088479 None:intergenic
CACAAAGTAGATGACTATAC+AGG 0.532204 1_3:+10088394 Msa0103060:CDS
CAGATACTAATCCTACGATT+CGG 0.533151 1_3:+10091962 Msa0103060:CDS
CCTTATCCAGTACTGCACAT+AGG 0.551255 1_3:-10090527 None:intergenic
GAAAGCAAAGACAACCTCAC+AGG 0.556099 1_3:-10087722 None:intergenic
AGTGGTAAGCTTGAGTAGCT+GGG 0.558761 1_3:+10088771 Msa0103060:CDS
TGGGTTGATGATCATCAGTA+AGG 0.563057 1_3:-10091985 None:intergenic
GAGTGAAGAAAGGAGAAGAG+TGG 0.563755 1_3:-10086812 None:intergenic
AAAGATGACAGGTCTTTCAC+TGG 0.565471 1_3:+10090799 Msa0103060:CDS
TTGATTATCGTCTAAAGGCA+AGG 0.567819 1_3:-10088500 None:intergenic
GAGCGATTTGACAGTACAAG+AGG 0.568669 1_3:+10090490 Msa0103060:CDS
GGACTCTCTATCGACAAATC+GGG 0.571163 1_3:-10091863 None:intergenic
ACTGCACATAGGTTGAGAAT+CGG 0.572145 1_3:-10090516 None:intergenic
AAAGAGCGGTGATTGCTCAA+AGG 0.572707 1_3:+10088584 Msa0103060:CDS
TGATTCGGAAGCATTGAGGT+TGG 0.577266 1_3:+10088231 Msa0103060:CDS
ATAATGCAACTAGAAAAGCT+TGG 0.577465 1_3:+10088265 Msa0103060:CDS
CATCAGTAAGGCCGAATCGT+AGG 0.579004 1_3:-10091973 None:intergenic
TTGCTGATTCGGAAGCATTG+AGG 0.585058 1_3:+10088227 Msa0103060:CDS
AGGGAGGTGGAAATGTCAAA+AGG 0.586693 1_3:+10088604 Msa0103060:CDS
AATTAGAACAGCTATAGAAG+AGG 0.591677 1_3:+10088738 Msa0103060:CDS
ATACTTTGCTAGAAAATACA+GGG 0.594173 1_3:+10088894 Msa0103060:CDS
AAAGGCAAGGATCGAGAGGA+AGG 0.595520 1_3:-10088487 None:intergenic
AAAGCTTGGACTCAAGGGAA+AGG 0.596464 1_3:+10091939 Msa0103060:CDS
TCTGTATATGGGGATTATGA+GGG 0.600375 1_3:+10092185 Msa0103060:three_prime_UTR
GTTGTGCAAAGTTTGGGGAA+AGG 0.602440 1_3:-10086701 None:intergenic
GTCTAAAGGCAAGGATCGAG+AGG 0.607879 1_3:-10088491 None:intergenic
TAAGTCAGATCCAGAAAGCA+CGG 0.609321 1_3:+10090726 Msa0103060:CDS
GGGAGATGAAGAACTGGTGG+TGG 0.613888 1_3:+10086627 Msa0103060:five_prime_UTR
ATGTGACGTAGCTGGAGGCA+GGG 0.615472 1_3:+10087685 Msa0103060:intron
GGTGATTGCTCAAAGGGAGG+TGG 0.619765 1_3:+10088591 Msa0103060:CDS
AGAAGAGGATACAAAGCAAG+TGG 0.626241 1_3:+10088753 Msa0103060:CDS
GAAATCAATGTCAAGAATGG+TGG 0.626575 1_3:+10090549 Msa0103060:CDS
GAAGCCGGTGAAGAACGTAA+TGG 0.630391 1_3:-10088529 None:intergenic
TCAGATCCAGAAAGCACGGA+AGG 0.632240 1_3:+10090730 Msa0103060:CDS
AAAGCAAAGACAACCTCACA+GGG 0.634488 1_3:-10087721 None:intergenic
GGTTTGTTAATGGAGAACCT+TGG 0.645273 1_3:+10088187 Msa0103060:CDS
AAACTTTATTCAACCCTGTG+AGG 0.647408 1_3:+10087708 Msa0103060:CDS
GGATATATAGGTGTTCTCCA+AGG 0.651530 1_3:+10090463 Msa0103060:CDS
ACAGTTTCTTCAATGTATCG+CGG 0.667801 1_3:+10090854 Msa0103060:CDS
AGCGGTGATTGCTCAAAGGG+AGG 0.670598 1_3:+10088588 Msa0103060:CDS
GCAAGGAGGAGAACTAACAA+AGG 0.676146 1_3:+10087841 Msa0103060:CDS
AAGTTTCTTCTAAAACACCA+AGG 0.678399 1_3:-10088204 None:intergenic
AGTCTCTTGAATATATAGGG+AGG 0.683476 1_3:+10092008 Msa0103060:CDS
CAAGGGAGATGAAGAACTGG+TGG 0.702546 1_3:+10086624 Msa0103060:five_prime_UTR
ATGGTGGCGAAATATGCTCG+AGG 0.710363 1_3:+10090565 Msa0103060:CDS
AGTGCAGTTCGATATGCATG+AGG 0.733742 1_3:-10088332 None:intergenic
AAAGTGTTGTGCAAAGTTTG+GGG 0.737918 1_3:-10086706 None:intergenic
TACTTTGCTAGAAAATACAG+GGG 0.744271 1_3:+10088895 Msa0103060:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAATTAGCAAAATAAAAT+AGG - chr1_3:10086935-10086954 None:intergenic 10.0%
!! TTTCATCTAAAAATAAATTT+CGG + chr1_3:10089613-10089632 Msa0103060:intron 10.0%
!! AATTTAGTTAAAAGTAATTA+TGG - chr1_3:10089856-10089875 None:intergenic 10.0%
!!! TTTTAAATAAAATTACTAGT+CGG - chr1_3:10090958-10090977 None:intergenic 10.0%
!!! AAATTCAACAAATTTTTAAA+TGG + chr1_3:10091273-10091292 Msa0103060:intron 10.0%
!!! TACTAGATAAAAATAATTTT+AGG - chr1_3:10091803-10091822 None:intergenic 10.0%
!!! TTTTTTTCACTTTGAATTTT+GGG + chr1_3:10087657-10087676 Msa0103060:intron 15.0%
!! TATTCATTCTTCTAAATATA+AGG - chr1_3:10088023-10088042 None:intergenic 15.0%
!!! CTTAAAAATATTTGTTTTTC+AGG + chr1_3:10088084-10088103 Msa0103060:intron 15.0%
!! AAATACTAAAAATAAAAGAG+CGG + chr1_3:10088570-10088589 Msa0103060:CDS 15.0%
!!! ACATTTTCTATATATTATTG+TGG + chr1_3:10088989-10089008 Msa0103060:intron 15.0%
!!! AGTTTTAAATTTTAAACATG+AGG + chr1_3:10089919-10089938 Msa0103060:intron 15.0%
!! TGTTGTTACATAAAAAGTTA+AGG - chr1_3:10086675-10086694 None:intergenic 20.0%
!! TGGAACATAGAATAAAATTA+TGG + chr1_3:10086731-10086750 Msa0103060:exon 20.0%
!! GGAACATAGAATAAAATTAT+GGG + chr1_3:10086732-10086751 Msa0103060:exon 20.0%
!! AATATCATTACTCTAAGTAA+AGG - chr1_3:10086969-10086988 None:intergenic 20.0%
!! TATATCATACAATTGATTGT+CGG - chr1_3:10087069-10087088 None:intergenic 20.0%
!! TTACACTAATTCAATCATAA+TGG - chr1_3:10087292-10087311 None:intergenic 20.0%
!! ATAAACTTATGAACTTAACA+GGG - chr1_3:10087325-10087344 None:intergenic 20.0%
!! TATAAACTTATGAACTTAAC+AGG - chr1_3:10087326-10087345 None:intergenic 20.0%
!!! AAACTCGAAAATTTTAACTA+TGG - chr1_3:10087584-10087603 None:intergenic 20.0%
!!! CTTTTTTTCACTTTGAATTT+TGG + chr1_3:10087656-10087675 Msa0103060:intron 20.0%
!!! TTTATGTTGATAGCTAAAAT+TGG + chr1_3:10088052-10088071 Msa0103060:intron 20.0%
!!! TTATGTTGATAGCTAAAATT+GGG + chr1_3:10088053-10088072 Msa0103060:intron 20.0%
!!! TTTGTTTTTCAGGTAAATAA+AGG + chr1_3:10088094-10088113 Msa0103060:intron 20.0%
!! CAATAAAATATCGAGTTATT+CGG + chr1_3:10088647-10088666 Msa0103060:intron 20.0%
!!! TTTTCTATATATTATTGTGG+AGG + chr1_3:10088992-10089011 Msa0103060:intron 20.0%
!!! GATTAACAATGGATATTTTA+TGG + chr1_3:10089094-10089113 Msa0103060:intron 20.0%
!!! TTAAATTTTAAACATGAGGT+CGG + chr1_3:10089923-10089942 Msa0103060:intron 20.0%
!!! GTATAATTGGACAATATTTT+TGG + chr1_3:10090013-10090032 Msa0103060:intron 20.0%
!!! TTTTGTAAATACTTTATAGC+AGG + chr1_3:10090279-10090298 Msa0103060:intron 20.0%
!! AATTTAGGAGTTTACATATT+TGG - chr1_3:10091010-10091029 None:intergenic 20.0%
!! TCAATAGTAAGAAATATGTT+TGG - chr1_3:10091061-10091080 None:intergenic 20.0%
!! TAGTTTAATGAGTAGTTAAT+GGG + chr1_3:10091323-10091342 Msa0103060:intron 20.0%
!! AAATCTTTAAATGGTTAACA+CGG - chr1_3:10091586-10091605 None:intergenic 20.0%
!! AAATTCGACAAATCTTTAAA+TGG - chr1_3:10091595-10091614 None:intergenic 20.0%
!! CTCAAAGTTGAATTATTATT+TGG + chr1_3:10092108-10092127 Msa0103060:CDS 20.0%
!!! ATCTATTTTCATCTGTATAT+GGG + chr1_3:10092174-10092193 Msa0103060:three_prime_UTR 20.0%
!!! TATACTAAATTTTGATGCAC+TGG + chr1_3:10087033-10087052 Msa0103060:intron 25.0%
! TTTGGATCACTAAATATATC+TGG - chr1_3:10087264-10087283 None:intergenic 25.0%
! ACTAATTCAATCATAATGGT+TGG - chr1_3:10087288-10087307 None:intergenic 25.0%
! TTTCATATATTAAGGTTCCT+GGG - chr1_3:10087496-10087515 None:intergenic 25.0%
!! TTTTCATATATTAAGGTTCC+TGG - chr1_3:10087497-10087516 None:intergenic 25.0%
! TTTGCTTTCAACAATTTATG+AGG + chr1_3:10087736-10087755 Msa0103060:CDS 25.0%
!!! TATGTTGATAGCTAAAATTG+GGG + chr1_3:10088054-10088073 Msa0103060:intron 25.0%
! TATACTTTGCTAGAAAATAC+AGG + chr1_3:10088893-10088912 Msa0103060:CDS 25.0%
! ATACTTTGCTAGAAAATACA+GGG + chr1_3:10088894-10088913 Msa0103060:CDS 25.0%
! ATATATGTTTGTGTATGAGA+TGG + chr1_3:10089162-10089181 Msa0103060:intron 25.0%
! TGATAAACTTAACATGTGTT+TGG - chr1_3:10089396-10089415 None:intergenic 25.0%
! ATGAAAACTTAACATGTGTT+TGG - chr1_3:10089599-10089618 None:intergenic 25.0%
!!! CAGTATTTTTGTAATCTTCA+AGG + chr1_3:10089887-10089906 Msa0103060:intron 25.0%
! TGTAATCTTCAAGGAATATA+AGG + chr1_3:10089896-10089915 Msa0103060:intron 25.0%
!! TAAATTTTAAACATGAGGTC+GGG + chr1_3:10089924-10089943 Msa0103060:intron 25.0%
! TGAAAGAGATTAACATGAAA+AGG + chr1_3:10090077-10090096 Msa0103060:intron 25.0%
! TAAATACTTTATAGCAGGAA+AGG + chr1_3:10090284-10090303 Msa0103060:intron 25.0%
! ATTGATCAAACCATTAATGA+TGG - chr1_3:10090334-10090353 None:intergenic 25.0%
! GAATAACATACAGGTTATTA+AGG - chr1_3:10090424-10090443 None:intergenic 25.0%
! TTATTCTCTTCACATTTCAT+AGG + chr1_3:10090438-10090457 Msa0103060:intron 25.0%
! ATTTCATAGGTAGGATATAT+AGG + chr1_3:10090451-10090470 Msa0103060:intron 25.0%
!! CTTTTCATTACTCTTTTTAG+TGG + chr1_3:10090687-10090706 Msa0103060:intron 25.0%
! TTTGCAATTTCAAGATCATT+GGG - chr1_3:10090782-10090801 None:intergenic 25.0%
! AAAAAGAAGAAGTAACAATG+GGG - chr1_3:10090920-10090939 None:intergenic 25.0%
! GAAAAAGAAGAAGTAACAAT+GGG - chr1_3:10090921-10090940 None:intergenic 25.0%
! AGAAAAAGAAGAAGTAACAA+TGG - chr1_3:10090922-10090941 None:intergenic 25.0%
! TAGATACGACTACATAAATT+TGG + chr1_3:10091101-10091120 Msa0103060:intron 25.0%
!!! GCCATTTTAAACAACAATTT+GGG + chr1_3:10091244-10091263 Msa0103060:intron 25.0%
!!! TCCCAAATTGTTGTTTAAAA+TGG - chr1_3:10091248-10091267 None:intergenic 25.0%
! GTAGTTTAATGAGTAGTTAA+TGG + chr1_3:10091322-10091341 Msa0103060:intron 25.0%
! GGTTAATTAAGTTCAGTTAA+TGG - chr1_3:10091375-10091394 None:intergenic 25.0%
! TGTTCAAATTTGTGGTTAAT+TGG - chr1_3:10091396-10091415 None:intergenic 25.0%
! GTTAGTAATGTTCAAATTTG+TGG - chr1_3:10091404-10091423 None:intergenic 25.0%
! GGTTAATAAAGTTCTGTAAA+TGG + chr1_3:10091494-10091513 Msa0103060:intron 25.0%
!!! TTGGTTGATAGATATATATC+AGG - chr1_3:10091533-10091552 None:intergenic 25.0%
!! TTTTCAAAGTTAGCAAAGAA+TGG + chr1_3:10092032-10092051 Msa0103060:CDS 25.0%
!! CATCTATTTTCATCTGTATA+TGG + chr1_3:10092173-10092192 Msa0103060:three_prime_UTR 25.0%
!! TCTATTTTCATCTGTATATG+GGG + chr1_3:10092175-10092194 Msa0103060:three_prime_UTR 25.0%
ATATGTGAATGAGTGAAGAA+AGG - chr1_3:10086825-10086844 None:intergenic 30.0%
TCATTACTCTAAGTAAAGGA+GGG - chr1_3:10086965-10086984 None:intergenic 30.0%
ATCATTACTCTAAGTAAAGG+AGG - chr1_3:10086966-10086985 None:intergenic 30.0%
!! GGGTACAATTATTTTACACA+TGG - chr1_3:10087218-10087237 None:intergenic 30.0%
TAAAATAATTGTACCCTGAC+AGG + chr1_3:10087222-10087241 Msa0103060:intron 30.0%
AAAATAATTGTACCCTGACA+GGG + chr1_3:10087223-10087242 Msa0103060:intron 30.0%
TTAATTAGTATACCCTGTCA+GGG - chr1_3:10087238-10087257 None:intergenic 30.0%
TTTAATTAGTATACCCTGTC+AGG - chr1_3:10087239-10087258 None:intergenic 30.0%
TCAATCATAATGGTTGGATT+TGG - chr1_3:10087282-10087301 None:intergenic 30.0%
TTCATATATTAAGGTTCCTG+GGG - chr1_3:10087495-10087514 None:intergenic 30.0%
CTTTCAACAATTTATGAGGA+AGG + chr1_3:10087740-10087759 Msa0103060:CDS 30.0%
! CCTTGCAATAAATCTTTTTC+CGG - chr1_3:10087827-10087846 None:intergenic 30.0%
GAAAAAGATTTATTGCAAGG+AGG + chr1_3:10087827-10087846 Msa0103060:CDS 30.0%
CATGATTGTATACAAAGCAA+AGG - chr1_3:10087880-10087899 None:intergenic 30.0%
CTTTGCTTTGTATACAATCA+TGG + chr1_3:10087878-10087897 Msa0103060:intron 30.0%
!! ATGTTGATAGCTAAAATTGG+GGG + chr1_3:10088055-10088074 Msa0103060:intron 30.0%
TTCAGGTAAATAAAGGAAAG+AGG + chr1_3:10088101-10088120 Msa0103060:intron 30.0%
!! ATCACATTTCGGTTTGTTAA+TGG + chr1_3:10088177-10088196 Msa0103060:CDS 30.0%
!! AAGTTTCTTCTAAAACACCA+AGG - chr1_3:10088207-10088226 None:intergenic 30.0%
!! AGAAGAAACTTTTGCTGATT+CGG + chr1_3:10088216-10088235 Msa0103060:CDS 30.0%
ATAATGCAACTAGAAAAGCT+TGG + chr1_3:10088265-10088284 Msa0103060:CDS 30.0%
GTTTGTCTAACAACATCTTT+CGG + chr1_3:10088307-10088326 Msa0103060:CDS 30.0%
GAAAATAGAAGAAGAAAGAG+AGG + chr1_3:10088448-10088467 Msa0103060:CDS 30.0%
TCTTCTTGATTATCGTCTAA+AGG - chr1_3:10088508-10088527 None:intergenic 30.0%
ATTTGCGTAATTTACAAGCA+TGG - chr1_3:10088675-10088694 None:intergenic 30.0%
!! TTAAAGTTTTGTACTACTCC+AGG + chr1_3:10088696-10088715 Msa0103060:intron 30.0%
AATTAGAACAGCTATAGAAG+AGG + chr1_3:10088738-10088757 Msa0103060:CDS 30.0%
TCTAGCAAAGTATAGAACTA+AGG - chr1_3:10088887-10088906 None:intergenic 30.0%
TACTTTGCTAGAAAATACAG+GGG + chr1_3:10088895-10088914 Msa0103060:CDS 30.0%
TTGCCAAACAAACACTTTAA+TGG - chr1_3:10089261-10089280 None:intergenic 30.0%
! AAAGTGTTTGTTTGGCAAAT+AGG + chr1_3:10089263-10089282 Msa0103060:intron 30.0%
TTTGGCAAATAGGAAAATCA+CGG + chr1_3:10089273-10089292 Msa0103060:intron 30.0%
AATTCACGTTCAAATTGTCT+AGG + chr1_3:10089340-10089359 Msa0103060:intron 30.0%
ATTCACGTTCAAATTGTCTA+GGG + chr1_3:10089341-10089360 Msa0103060:intron 30.0%
TTAACATGTGTTTGGATACA+CGG - chr1_3:10089388-10089407 None:intergenic 30.0%
TTTGCCAAACAAACACTTAA+TGG - chr1_3:10089465-10089484 None:intergenic 30.0%
TAAGTGTTTGTTTGGCAAAT+AGG + chr1_3:10089466-10089485 Msa0103060:intron 30.0%
TTTGGCAAATAGGAAAATCA+CGG + chr1_3:10089273-10089292 Msa0103060:intron 30.0%
AATTCACGTTCAAATTGTCT+AGG + chr1_3:10089340-10089359 Msa0103060:intron 30.0%
ATTCACGTTCAAATTGTCTA+GGG + chr1_3:10089341-10089360 Msa0103060:intron 30.0%
TTAACATGTGTTTGGATACA+CGG - chr1_3:10089388-10089407 None:intergenic 30.0%
TGCTTGATCTATCATGAAAA+GGG - chr1_3:10089698-10089717 None:intergenic 30.0%
TTATAAACTTCTGTGCATGT+CGG - chr1_3:10089728-10089747 None:intergenic 30.0%
TTTGTATTCTCAACTATCGT+GGG + chr1_3:10089749-10089768 Msa0103060:intron 30.0%
AAAATAGAGAATGATTAGCG+AGG + chr1_3:10089800-10089819 Msa0103060:intron 30.0%
! AAATTTTAAACATGAGGTCG+GGG + chr1_3:10089925-10089944 Msa0103060:intron 30.0%
! TTTTAAACTCTGTTCACTCA+AGG + chr1_3:10089969-10089988 Msa0103060:intron 30.0%
AAGGTGATTTGAAAGATTCA+AGG + chr1_3:10089988-10090007 Msa0103060:intron 30.0%
AGGTGATTTGAAAGATTCAA+GGG + chr1_3:10089989-10090008 Msa0103060:intron 30.0%
! AAGATTCAAGGGTGTATAAT+TGG + chr1_3:10090000-10090019 Msa0103060:intron 30.0%
!!! GGACAATATTTTTGGAAACT+CGG + chr1_3:10090021-10090040 Msa0103060:intron 30.0%
TATATAGGCAAATATACTGC+CGG - chr1_3:10090050-10090069 None:intergenic 30.0%
CTCTTTCATGTAGACTATAT+AGG - chr1_3:10090065-10090084 None:intergenic 30.0%
! TAGAGTGTTTCCATCATTAA+TGG + chr1_3:10090321-10090340 Msa0103060:intron 30.0%
ATGTGAAGAGAATAACATAC+AGG - chr1_3:10090433-10090452 None:intergenic 30.0%
AAGGAAATCAATGTCAAGAA+TGG + chr1_3:10090546-10090565 Msa0103060:CDS 30.0%
TAACGCAAAGATCAAATTCA+TGG - chr1_3:10090662-10090681 None:intergenic 30.0%
AAGATCATTGGGATATTTCA+TGG - chr1_3:10090771-10090790 None:intergenic 30.0%
CTTTGCAATTTCAAGATCAT+TGG - chr1_3:10090783-10090802 None:intergenic 30.0%
AAGAAACTGTTCTTAGACAA+TGG - chr1_3:10090844-10090863 None:intergenic 30.0%
! CTTCTTTTTCTGTTATGTTG+TGG + chr1_3:10090931-10090950 Msa0103060:intron 30.0%
TGAATGTCAACCAAAAAAAC+AGG + chr1_3:10091135-10091154 Msa0103060:intron 30.0%
GAATGTCAACCAAAAAAACA+GGG + chr1_3:10091136-10091155 Msa0103060:intron 30.0%
!!! TTTTCAACACCCTGTTTTTT+TGG - chr1_3:10091148-10091167 None:intergenic 30.0%
ATGTCTTGTAAACATCAGAA+AGG + chr1_3:10091222-10091241 Msa0103060:intron 30.0%
!! GGCCATTTTAAACAACAATT+TGG + chr1_3:10091243-10091262 Msa0103060:intron 30.0%
! GTTAATGGGTATATCAAGAT+TGG + chr1_3:10091337-10091356 Msa0103060:intron 30.0%
TGAACATTACTAACGATTTC+AGG + chr1_3:10091410-10091429 Msa0103060:intron 30.0%
! TTTTCAAATCTCCATGTAGT+TGG - chr1_3:10091440-10091459 None:intergenic 30.0%
GTTGATCACATTTCAAATTG+TGG + chr1_3:10091473-10091492 Msa0103060:intron 30.0%
!!! ACTTACTTTCTTTTTTCCCT+CGG + chr1_3:10091686-10091705 Msa0103060:intron 30.0%
! GTTTTTATGACCATGTATGT+TGG + chr1_3:10091710-10091729 Msa0103060:intron 30.0%
CATGAATATACCAACATACA+TGG - chr1_3:10091723-10091742 None:intergenic 30.0%
CCTATATATTCAAGAGACTT+GGG - chr1_3:10092007-10092026 None:intergenic 30.0%
CCAAGTCTCTTGAATATATA+GGG + chr1_3:10092005-10092024 Msa0103060:CDS 30.0%
AAGTTAGCAAAGAATGGATA+AGG + chr1_3:10092038-10092057 Msa0103060:CDS 30.0%
TTGGATCTGTAGTTTATCAT+TGG + chr1_3:10092127-10092146 Msa0103060:exon 30.0%
ACAGTGCATTCAATAAACTT+TGG - chr1_3:10092230-10092249 None:intergenic 30.0%
!! AAAGTGTTGTGCAAAGTTTG+GGG - chr1_3:10086709-10086728 None:intergenic 35.0%
!! GAAAGTGTTGTGCAAAGTTT+GGG - chr1_3:10086710-10086729 None:intergenic 35.0%
!! TGAAAGTGTTGTGCAAAGTT+TGG - chr1_3:10086711-10086730 None:intergenic 35.0%
AACTTTGCACAACACTTTCA+TGG + chr1_3:10086711-10086730 Msa0103060:five_prime_UTR 35.0%
AAAATTATGGGTCTCTGCTT+TGG + chr1_3:10086744-10086763 Msa0103060:exon 35.0%
TGAAGATGAAGATGAAGAAG+AGG - chr1_3:10086853-10086872 None:intergenic 35.0%
TCATCTTCATCTTCATCTTC+TGG + chr1_3:10086858-10086877 Msa0103060:CDS 35.0%
ATACAATTGATTGTCGGTGA+TGG - chr1_3:10087063-10087082 None:intergenic 35.0%
ATTAGTATGCTATGTCAGTC+AGG + chr1_3:10087097-10087116 Msa0103060:intron 35.0%
TTAGTATGCTATGTCAGTCA+GGG + chr1_3:10087098-10087117 Msa0103060:intron 35.0%
TGGTCAAAGATTGTTAGCAA+GGG - chr1_3:10087426-10087445 None:intergenic 35.0%
TTGGTCAAAGATTGTTAGCA+AGG - chr1_3:10087427-10087446 None:intergenic 35.0%
GTTTGGAGGTAAGTAAAGTT+TGG - chr1_3:10087446-10087465 None:intergenic 35.0%
TCATATATTAAGGTTCCTGG+GGG - chr1_3:10087494-10087513 None:intergenic 35.0%
TGTGATTTCCAGTTAGAAGA+AGG + chr1_3:10087555-10087574 Msa0103060:intron 35.0%
TATGGTATCCTTCTTCTAAC+TGG - chr1_3:10087566-10087585 None:intergenic 35.0%
AAACTTTATTCAACCCTGTG+AGG + chr1_3:10087708-10087727 Msa0103060:CDS 35.0%
! TGCATTTTCATCATCAGCAT+TGG + chr1_3:10087796-10087815 Msa0103060:CDS 35.0%
!! ATTTTCATCATCAGCATTGG+AGG + chr1_3:10087799-10087818 Msa0103060:CDS 35.0%
CCGGAAAAAGATTTATTGCA+AGG + chr1_3:10087824-10087843 Msa0103060:CDS 35.0%
!! CCTTTTGAGGAATCACATTT+CGG + chr1_3:10088166-10088185 Msa0103060:CDS 35.0%
CTGTATAGTCATCTACTTTG+TGG - chr1_3:10088396-10088415 None:intergenic 35.0%
CACAAAGTAGATGACTATAC+AGG + chr1_3:10088394-10088413 Msa0103060:CDS 35.0%
TTTCCTTTCTCTTGCTAGAA+TGG - chr1_3:10088432-10088451 None:intergenic 35.0%
TTGATTATCGTCTAAAGGCA+AGG - chr1_3:10088503-10088522 None:intergenic 35.0%
! GGAAATGTCAAAAGGTGTAA+AGG + chr1_3:10088612-10088631 Msa0103060:CDS 35.0%
ATTGTGGAGGAGTTTCTATT+TGG + chr1_3:10089005-10089024 Msa0103060:intron 35.0%
CATTGTTAATCGCAAAACTC+AGG - chr1_3:10089085-10089104 None:intergenic 35.0%
! CTGAGTTTTGCGATTAACAA+TGG + chr1_3:10089083-10089102 Msa0103060:intron 35.0%
ATGTTTGTGTATGAGATGGA+AGG + chr1_3:10089166-10089185 Msa0103060:intron 35.0%
TAGATAGAGTTCATGACACA+AGG + chr1_3:10089217-10089236 Msa0103060:intron 35.0%
CCAAACAAACACTTTAATGG+AGG - chr1_3:10089258-10089277 None:intergenic 35.0%
! CCTCCATTAAAGTGTTTGTT+TGG + chr1_3:10089255-10089274 Msa0103060:intron 35.0%
GCTAGTAAGTGTAGAGTTTA+TGG - chr1_3:10089313-10089332 None:intergenic 35.0%
TAGATAGAGTTCATGACACA+AGG + chr1_3:10089217-10089236 Msa0103060:intron 35.0%
ACCTCCATTAAGTGTTTGTT+TGG + chr1_3:10089458-10089477 Msa0103060:intron 35.0%
GCTAGTAGTTGTAGAGTTTA+TGG - chr1_3:10089516-10089535 None:intergenic 35.0%
AATTCTAGGTCAAAACTTGC+AGG - chr1_3:10089643-10089662 None:intergenic 35.0%
!! GTGCTTGTTTCTGAAATTCT+AGG - chr1_3:10089657-10089676 None:intergenic 35.0%
CTTGATCTATCATGAAAAGG+GGG - chr1_3:10089696-10089715 None:intergenic 35.0%
GCTTGATCTATCATGAAAAG+GGG - chr1_3:10089697-10089716 None:intergenic 35.0%
CTGCTTGATCTATCATGAAA+AGG - chr1_3:10089699-10089718 None:intergenic 35.0%
CTTTGTATTCTCAACTATCG+TGG + chr1_3:10089748-10089767 Msa0103060:intron 35.0%
TTAGCGAGGAAAATGATCAT+CGG + chr1_3:10089814-10089833 Msa0103060:intron 35.0%
!! ATTTTTGGAAACTCGGTATC+CGG + chr1_3:10090028-10090047 Msa0103060:intron 35.0%
GAAAAGGTAAGACATAGTCA+AGG + chr1_3:10090093-10090112 Msa0103060:intron 35.0%
TAAGACATAGTCAAGGTTCT+TGG + chr1_3:10090100-10090119 Msa0103060:intron 35.0%
! TTTGTTGTCTGCATCACTTA+TGG + chr1_3:10090197-10090216 Msa0103060:intron 35.0%
!! AAGGAGCATTCATGTATATG+TGG - chr1_3:10090405-10090424 None:intergenic 35.0%
TCTCTTCACATTTCATAGGT+AGG + chr1_3:10090442-10090461 Msa0103060:intron 35.0%
GAAATCAATGTCAAGAATGG+TGG + chr1_3:10090549-10090568 Msa0103060:CDS 35.0%
TAAGCAAAAGAGGAACATAC+AGG - chr1_3:10090601-10090620 None:intergenic 35.0%
! TGTATGTTCCTCTTTTGCTT+AGG + chr1_3:10090600-10090619 Msa0103060:intron 35.0%
!! TTTTTAGTGGTCGATGAACA+AGG + chr1_3:10090700-10090719 Msa0103060:intron 35.0%
CTTGAAATTGCAAAGATGAC+AGG + chr1_3:10090788-10090807 Msa0103060:CDS 35.0%
ACAGTTTCTTCAATGTATCG+CGG + chr1_3:10090854-10090873 Msa0103060:CDS 35.0%
CAACACTGCTTTCTCAATTT+AGG - chr1_3:10091025-10091044 None:intergenic 35.0%
CTCATTAAACTACGTTGATC+AGG - chr1_3:10091315-10091334 None:intergenic 35.0%
! GGTTAACGAAGTGTTAGATT+TGG - chr1_3:10091552-10091571 None:intergenic 35.0%
! GTTAACACGGTTTTTACACA+TGG - chr1_3:10091573-10091592 None:intergenic 35.0%
ACATTCATGCTTACTCTAAG+AGG - chr1_3:10091746-10091765 None:intergenic 35.0%
TTTCATGACATTCATTCTGC+AGG + chr1_3:10091832-10091851 Msa0103060:intron 35.0%
TTCATGACATTCATTCTGCA+GGG + chr1_3:10091833-10091852 Msa0103060:intron 35.0%
CAGATACTAATCCTACGATT+CGG + chr1_3:10091962-10091981 Msa0103060:CDS 35.0%
CCCAAGTCTCTTGAATATAT+AGG + chr1_3:10092004-10092023 Msa0103060:CDS 35.0%
CCCTATATATTCAAGAGACT+TGG - chr1_3:10092008-10092027 None:intergenic 35.0%
AGTCTCTTGAATATATAGGG+AGG + chr1_3:10092008-10092027 Msa0103060:CDS 35.0%
ATCTGTATATGGGGATTATG+AGG + chr1_3:10092184-10092203 Msa0103060:three_prime_UTR 35.0%
TCTGTATATGGGGATTATGA+GGG + chr1_3:10092185-10092204 Msa0103060:three_prime_UTR 35.0%
TACTCTAAGTAAAGGAGGGA+AGG - chr1_3:10086961-10086980 None:intergenic 40.0%
TTTAAATGTGACGTAGCTGG+AGG + chr1_3:10087680-10087699 Msa0103060:intron 40.0%
AAAGCAAAGACAACCTCACA+GGG - chr1_3:10087724-10087743 None:intergenic 40.0%
! TAACACGCAGTTACCTTTTG+AGG + chr1_3:10088153-10088172 Msa0103060:CDS 40.0%
CCGAAATGTGATTCCTCAAA+AGG - chr1_3:10088169-10088188 None:intergenic 40.0%
!! GGTTTGTTAATGGAGAACCT+TGG + chr1_3:10088187-10088206 Msa0103060:CDS 40.0%
TGTCCATTCTAGCAAGAGAA+AGG + chr1_3:10088426-10088445 Msa0103060:CDS 40.0%
AGATCCATTACGTTCTTCAC+CGG + chr1_3:10088525-10088544 Msa0103060:CDS 40.0%
! GCTCTTTTTGCAAAAGAAGC+CGG - chr1_3:10088547-10088566 None:intergenic 40.0%
TCTCTAATTCTGCTAGAACC+TGG - chr1_3:10088717-10088736 None:intergenic 40.0%
AGAAGAGGATACAAAGCAAG+TGG + chr1_3:10088753-10088772 Msa0103060:CDS 40.0%
CTACAACAGCAACTGTATCA+TGG + chr1_3:10088823-10088842 Msa0103060:CDS 40.0%
TGCTAGAAAATACAGGGGTA+TGG + chr1_3:10088900-10088919 Msa0103060:CDS 40.0%
! GCTAGAAAATACAGGGGTAT+GGG + chr1_3:10088901-10088920 Msa0103060:CDS 40.0%
!! AGCTTTGGAAGATTTGCTTC+AGG + chr1_3:10088927-10088946 Msa0103060:CDS 40.0%
TGTAGAGTTTATGGAACGTG+CGG - chr1_3:10089304-10089323 None:intergenic 40.0%
GCCAAACAAACACTTAATGG+AGG - chr1_3:10089462-10089481 None:intergenic 40.0%
TGTAGAGTTTATGGAACGTG+CGG - chr1_3:10089304-10089323 None:intergenic 40.0%
! GTGGGAAACATTGTTTTCTG+TGG + chr1_3:10089767-10089786 Msa0103060:intron 40.0%
AATCATGTGTAACTTCCCCA+CGG - chr1_3:10089951-10089970 None:intergenic 40.0%
!!! CATGTCGTTTTGGGTGAAAA+GGG - chr1_3:10090148-10090167 None:intergenic 40.0%
!!! CAACTGTTGCATGTCGTTTT+GGG - chr1_3:10090157-10090176 None:intergenic 40.0%
ACAGTTGCTTATGACGATGT+TGG + chr1_3:10090170-10090189 Msa0103060:intron 40.0%
GCACAAGTGAAGTTAACCTA+AGG - chr1_3:10090223-10090242 None:intergenic 40.0%
CAAAATGCTCTGTCTTCGAA+AGG - chr1_3:10090264-10090283 None:intergenic 40.0%
GGATATATAGGTGTTCTCCA+AGG + chr1_3:10090463-10090482 Msa0103060:CDS 40.0%
! ACTGCACATAGGTTGAGAAT+CGG - chr1_3:10090519-10090538 None:intergenic 40.0%
! ATGTTCCTCTTTTGCTTAGG+AGG + chr1_3:10090603-10090622 Msa0103060:intron 40.0%
AACAACCTCCTAAGCAAAAG+AGG - chr1_3:10090611-10090630 None:intergenic 40.0%
TAAGTCAGATCCAGAAAGCA+CGG + chr1_3:10090726-10090745 Msa0103060:CDS 40.0%
AAAGATGACAGGTCTTTCAC+TGG + chr1_3:10090799-10090818 Msa0103060:CDS 40.0%
AGTAACAATGGGGCAAACAT+GGG - chr1_3:10090910-10090929 None:intergenic 40.0%
AAGTAACAATGGGGCAAACA+TGG - chr1_3:10090911-10090930 None:intergenic 40.0%
TAAACCATCATGTGTCCATG+AGG + chr1_3:10091658-10091677 Msa0103060:intron 40.0%
! GAAAGTAAGTGTTGTCCTCA+TGG - chr1_3:10091676-10091695 None:intergenic 40.0%
CATGGTCATAAAAACACCGA+GGG - chr1_3:10091705-10091724 None:intergenic 40.0%
ACATGGTCATAAAAACACCG+AGG - chr1_3:10091706-10091725 None:intergenic 40.0%
! CATTGTGATTTGTGAGACTC+AGG + chr1_3:10091768-10091787 Msa0103060:intron 40.0%
AGGACTCTCTATCGACAAAT+CGG - chr1_3:10091867-10091886 None:intergenic 40.0%
TGTTTCATGACAGTCTCTTC+AGG - chr1_3:10091887-10091906 None:intergenic 40.0%
ACATGATATCCTCCAAAGCT+TGG + chr1_3:10091925-10091944 Msa0103060:CDS 40.0%
!! TGGGTTGATGATCATCAGTA+AGG - chr1_3:10091988-10092007 None:intergenic 40.0%
GTTGTGCAAAGTTTGGGGAA+AGG - chr1_3:10086704-10086723 None:intergenic 45.0%
AAGGAGAAGAGTGGTGAAGA+GGG - chr1_3:10086806-10086825 None:intergenic 45.0%
AAAGGAGAAGAGTGGTGAAG+AGG - chr1_3:10086807-10086826 None:intergenic 45.0%
GAGTGAAGAAAGGAGAAGAG+TGG - chr1_3:10086815-10086834 None:intergenic 45.0%
ACTGATCACGTCTAAACGCA+CGG + chr1_3:10087143-10087162 Msa0103060:intron 45.0%
TGTTAGCAAGGGTTCGAACT+CGG - chr1_3:10087415-10087434 None:intergenic 45.0%
CTTACCTCCAAACTGAACTC+CGG + chr1_3:10087453-10087472 Msa0103060:intron 45.0%
TGACAATCCGGAGTTCAGTT+TGG - chr1_3:10087463-10087482 None:intergenic 45.0%
ATTAAGGTTCCTGGGGGAAT+CGG - chr1_3:10087488-10087507 None:intergenic 45.0%
TAGTGTGTGTGTGTGTGTCT+TGG + chr1_3:10087530-10087549 Msa0103060:intron 45.0%
GGGTTTAAATGTGACGTAGC+TGG + chr1_3:10087677-10087696 Msa0103060:intron 45.0%
GAAAGCAAAGACAACCTCAC+AGG - chr1_3:10087725-10087744 None:intergenic 45.0%
GCAAGGAGGAGAACTAACAA+AGG + chr1_3:10087841-10087860 Msa0103060:CDS 45.0%
CAGAGAATCGCTGTCAAATG+TGG + chr1_3:10087937-10087956 Msa0103060:intron 45.0%
!! ACTGTGATTTTGGCAGCATC+AGG - chr1_3:10087963-10087982 None:intergenic 45.0%
TGATGCTGCCAAAATCACAG+TGG + chr1_3:10087962-10087981 Msa0103060:intron 45.0%
! TGTCTCTGCCACTGTGATTT+TGG - chr1_3:10087973-10087992 None:intergenic 45.0%
!! TTGCTGATTCGGAAGCATTG+AGG + chr1_3:10088227-10088246 Msa0103060:CDS 45.0%
!! TGATTCGGAAGCATTGAGGT+TGG + chr1_3:10088231-10088250 Msa0103060:CDS 45.0%
AGTGCAGTTCGATATGCATG+AGG - chr1_3:10088335-10088354 None:intergenic 45.0%
AAAGAGCGGTGATTGCTCAA+AGG + chr1_3:10088584-10088603 Msa0103060:CDS 45.0%
AAGAGCGGTGATTGCTCAAA+GGG + chr1_3:10088585-10088604 Msa0103060:CDS 45.0%
AGGGAGGTGGAAATGTCAAA+AGG + chr1_3:10088604-10088623 Msa0103060:CDS 45.0%
AAGTGGTAAGCTTGAGTAGC+TGG + chr1_3:10088770-10088789 Msa0103060:CDS 45.0%
AGTGGTAAGCTTGAGTAGCT+GGG + chr1_3:10088771-10088790 Msa0103060:CDS 45.0%
! AGCATCTGGAGTTGACGAAA+AGG + chr1_3:10088798-10088817 Msa0103060:CDS 45.0%
ACATGTGTTTGGATACACGG+TGG - chr1_3:10089385-10089404 None:intergenic 45.0%
!!! GCATGTCGTTTTGGGTGAAA+AGG - chr1_3:10090149-10090168 None:intergenic 45.0%
!! GCAACTGTTGCATGTCGTTT+TGG - chr1_3:10090158-10090177 None:intergenic 45.0%
TCTGCATCACTTATGGCCTT+AGG + chr1_3:10090204-10090223 Msa0103060:intron 45.0%
GAGCGATTTGACAGTACAAG+AGG + chr1_3:10090490-10090509 Msa0103060:CDS 45.0%
TCTCAACCTATGTGCAGTAC+TGG + chr1_3:10090521-10090540 Msa0103060:CDS 45.0%
CCTTATCCAGTACTGCACAT+AGG - chr1_3:10090530-10090549 None:intergenic 45.0%
! CCTATGTGCAGTACTGGATA+AGG + chr1_3:10090527-10090546 Msa0103060:CDS 45.0%
! GTATCGCGGCATTGAATACA+TGG + chr1_3:10090868-10090887 Msa0103060:CDS 45.0%
TTTCAGGCGTTCCAACTACA+TGG + chr1_3:10091426-10091445 Msa0103060:intron 45.0%
TTGTCCTCATGGACACATGA+TGG - chr1_3:10091665-10091684 None:intergenic 45.0%
GGACTCTCTATCGACAAATC+GGG - chr1_3:10091866-10091885 None:intergenic 45.0%
TTTCCCTTGAGTCCAAGCTT+TGG - chr1_3:10091940-10091959 None:intergenic 45.0%
AAAGCTTGGACTCAAGGGAA+AGG + chr1_3:10091939-10091958 Msa0103060:CDS 45.0%
!! TTAATTAATATAATACAAAA+AGG - chr1_3:10086898-10086917 None:intergenic 5.0%
!!! ATATATATTTTCATATATTA+AGG - chr1_3:10087504-10087523 None:intergenic 5.0%
CAAGGGAGATGAAGAACTGG+TGG + chr1_3:10086624-10086643 Msa0103060:five_prime_UTR 50.0%
GTGCGTTTAGACGTGATCAG+TGG - chr1_3:10087144-10087163 None:intergenic 50.0%
CTGATCACGTCTAAACGCAC+GGG + chr1_3:10087144-10087163 Msa0103060:intron 50.0%
CAATCCGGAGTTCAGTTTGG+AGG - chr1_3:10087460-10087479 None:intergenic 50.0%
!! GGGGAATCGGTTTGACAATC+CGG - chr1_3:10087475-10087494 None:intergenic 50.0%
! ATTGTCAAACCGATTCCCCC+AGG + chr1_3:10087476-10087495 Msa0103060:intron 50.0%
! ATCATCAGCATTGGAGGCTC+CGG + chr1_3:10087805-10087824 Msa0103060:CDS 50.0%
AAAGGCAAGGATCGAGAGGA+AGG - chr1_3:10088490-10088509 None:intergenic 50.0%
GTCTAAAGGCAAGGATCGAG+AGG - chr1_3:10088494-10088513 None:intergenic 50.0%
GAAGCCGGTGAAGAACGTAA+TGG - chr1_3:10088532-10088551 None:intergenic 50.0%
! CAGGGGTATGGGAATAGCTT+TGG + chr1_3:10088912-10088931 Msa0103060:CDS 50.0%
GTTTGGATACACGGTGACGT+TGG - chr1_3:10089379-10089398 None:intergenic 50.0%
GAGGAAAATGATCATCGGCG+TGG + chr1_3:10089819-10089838 Msa0103060:intron 50.0%
TGTCAAATCGCTCTGCTCCT+TGG - chr1_3:10090483-10090502 None:intergenic 50.0%
! ATGGTGGCGAAATATGCTCG+AGG + chr1_3:10090565-10090584 Msa0103060:CDS 50.0%
! TCAGATCCAGAAAGCACGGA+AGG + chr1_3:10090730-10090749 Msa0103060:CDS 50.0%
TCAAGACCTTCCGTGCTTTC+TGG - chr1_3:10090739-10090758 None:intergenic 50.0%
TCCTCCAAAGCTTGGACTCA+AGG + chr1_3:10091933-10091952 Msa0103060:CDS 50.0%
CCTCCAAAGCTTGGACTCAA+GGG + chr1_3:10091934-10091953 Msa0103060:CDS 50.0%
CATCAGTAAGGCCGAATCGT+AGG - chr1_3:10091976-10091995 None:intergenic 50.0%
GGGAGATGAAGAACTGGTGG+TGG + chr1_3:10086627-10086646 Msa0103060:five_prime_UTR 55.0%
AATGTGACGTAGCTGGAGGC+AGG + chr1_3:10087684-10087703 Msa0103060:intron 55.0%
ATGTGACGTAGCTGGAGGCA+GGG + chr1_3:10087685-10087704 Msa0103060:intron 55.0%
!! GGATCGAGAGGAAGGTGCTA+TGG - chr1_3:10088482-10088501 None:intergenic 55.0%
AGCGGTGATTGCTCAAAGGG+AGG + chr1_3:10088588-10088607 Msa0103060:CDS 55.0%
GGTGATTGCTCAAAGGGAGG+TGG + chr1_3:10088591-10088610 Msa0103060:CDS 55.0%
!! AGTAGCTGGGCAGAAGCATC+TGG + chr1_3:10088784-10088803 Msa0103060:CDS 55.0%
GTTTGGATACACGGTGGCGT+TGG - chr1_3:10089582-10089601 None:intergenic 55.0%
! CCCTTGAGTCCAAGCTTTGG+AGG - chr1_3:10091937-10091956 None:intergenic 55.0%
TAAACATGAGGTCGGGGCCG+TGG + chr1_3:10089931-10089950 Msa0103060:intron 60.0%
AAACATGAGGTCGGGGCCGT+GGG + chr1_3:10089932-10089951 Msa0103060:intron 60.0%
AACATGAGGTCGGGGCCGTG+GGG + chr1_3:10089933-10089952 Msa0103060:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 10086623 10092312 10086623 ID=Msa0103060;Name=Msa0103060
chr1_3 mRNA 10086623 10092312 10086623 ID=Msa0103060-mRNA-1;Parent=Msa0103060;Name=Msa0103060-mRNA-1;_AED=0.21;_eAED=0.21;_QI=127|1|1|1|0.66|0.85|7|174|553
chr1_3 exon 10086623 10086879 10086623 ID=Msa0103060-mRNA-1:exon:4205;Parent=Msa0103060-mRNA-1
chr1_3 exon 10087699 10087862 10087699 ID=Msa0103060-mRNA-1:exon:4206;Parent=Msa0103060-mRNA-1
chr1_3 exon 10088106 10088633 10088106 ID=Msa0103060-mRNA-1:exon:4207;Parent=Msa0103060-mRNA-1
chr1_3 exon 10088718 10088948 10088718 ID=Msa0103060-mRNA-1:exon:4208;Parent=Msa0103060-mRNA-1
chr1_3 exon 10090460 10090600 10090460 ID=Msa0103060-mRNA-1:exon:4209;Parent=Msa0103060-mRNA-1
chr1_3 exon 10090707 10090889 10090707 ID=Msa0103060-mRNA-1:exon:4210;Parent=Msa0103060-mRNA-1
chr1_3 exon 10091854 10092312 10091854 ID=Msa0103060-mRNA-1:exon:4211;Parent=Msa0103060-mRNA-1
chr1_3 five_prime_UTR 10086623 10086749 10086623 ID=Msa0103060-mRNA-1:five_prime_utr;Parent=Msa0103060-mRNA-1
chr1_3 CDS 10086750 10086879 10086750 ID=Msa0103060-mRNA-1:cds;Parent=Msa0103060-mRNA-1
chr1_3 CDS 10087699 10087862 10087699 ID=Msa0103060-mRNA-1:cds;Parent=Msa0103060-mRNA-1
chr1_3 CDS 10088106 10088633 10088106 ID=Msa0103060-mRNA-1:cds;Parent=Msa0103060-mRNA-1
chr1_3 CDS 10088718 10088948 10088718 ID=Msa0103060-mRNA-1:cds;Parent=Msa0103060-mRNA-1
chr1_3 CDS 10090460 10090600 10090460 ID=Msa0103060-mRNA-1:cds;Parent=Msa0103060-mRNA-1
chr1_3 CDS 10090707 10090889 10090707 ID=Msa0103060-mRNA-1:cds;Parent=Msa0103060-mRNA-1
chr1_3 CDS 10091854 10092138 10091854 ID=Msa0103060-mRNA-1:cds;Parent=Msa0103060-mRNA-1
chr1_3 three_prime_UTR 10092139 10092312 10092139 ID=Msa0103060-mRNA-1:three_prime_utr;Parent=Msa0103060-mRNA-1
Gene Sequence

>Msa0103060

ATGGGTCTCTGCTTTGGTTTTAGACTAAACACTAAACTCAGATATAGTACTGTCCCTCTTCACCACTCTTCTCCTTTCTTCACTCATTCACATATCTTTACCTCTTCTTCATCTTCATCTTCATCTTCTGGAGGCAGGGAAACTTTATTCAACCCTGTGAGGTTGTCTTTGCTTTCAACAATTTATGAGGAAGGAGAAACTTTGCAGAAAGATTTTCGAAAGACATTTGCATTTTCATCATCAGCATTGGAGGCTCCGGAAAAAGATTTATTGCAAGGAGGAGAACTAACAAAGGTAAATAAAGGAAAGAGGTCGCTTAGTAGTGTGCATGAAATGACAGATAACACGCAGTTACCTTTTGAGGAATCACATTTCGGTTTGTTAATGGAGAACCTTGGTGTTTTAGAAGAAACTTTTGCTGATTCGGAAGCATTGAGGTTGGAAAAGAATATTATAATGCAACTAGAAAAGCTTGGAGCTCTTGAGTTGTTCAATGTTTGTCTAACAACATCTTTCGGAACCTCATGCATATCGAACTGCACTCACAAAGTTCTTGAACAAGTTGAAGAGAATAAGAGAAACCACAAAGTAGATGACTATACAGGTAAAGTTATTGTCCATTCTAGCAAGAGAAAGGAAAATAGAAGAAGAAAGAGAGGATCTGTTTCCATAGCACCTTCCTCTCGATCCTTGCCTTTAGACGATAATCAAGAAGATCCATTACGTTCTTCACCGGCTTCTTTTGCAAAAAGAGCATCAAATACTAAAAATAAAAGAGCGGTGATTGCTCAAAGGGAGGTGGAAATGTCAAAAGGTGTAAAGGTTCTAGCAGAATTAGAGAAAATTAGAACAGCTATAGAAGAGGATACAAAGCAAGTGGTAAGCTTGAGTAGCTGGGCAGAAGCATCTGGAGTTGACGAAAAGGTGCTACAACAGCAACTGTATCATGGCTATTATTGTAGAGATGAGTTGATACGCAGTACTCGTTCCTTAGTTCTATACTTTGCTAGAAAATACAGGGGTATGGGAATAGCTTTGGAAGATTTGCTTCAGGTAGGATATATAGGTGTTCTCCAAGGAGCAGAGCGATTTGACAGTACAAGAGGATACCGATTCTCAACCTATGTGCAGTACTGGATAAGGAAATCAATGTCAAGAATGGTGGCGAAATATGCTCGAGGAATCACTGTTCCTTGGTCGATGAACAAGGCAATAAGTCAGATCCAGAAAGCACGGAAGGTCTTGAAAAATACAACCATGAAATATCCCAATGATCTTGAAATTGCAAAGATGACAGGTCTTTCACTGGACAAAATCATGTCAGCTAGCCATTGTCTAAGAACAGTTTCTTCAATGTATCGCGGCATTGAATACATGGGTCATATGCCCGATTTGTCGATAGAGAGTCCTGAAGAGACTGTCATGAAACAGCACATTAAGAAAGATATACATGATATCCTCCAAAGCTTGGACTCAAGGGAAAGGCAGATACTAATCCTACGATTCGGCCTTACTGATGATCATCAACCCAAGTCTCTTGAATATATAGGGAGGATTTTCAAAGTTAGCAAAGAATGGATAAGGAAAATAGAGAAAAAAGCTCTCACAAAATTAAAGAATGAAACAAACATCTCAAAGTTGAATTATTATTTGGATCTGTAG

Protein sequence

>Msa0103060

MGLCFGFRLNTKLRYSTVPLHHSSPFFTHSHIFTSSSSSSSSSGGRETLFNPVRLSLLSTIYEEGETLQKDFRKTFAFSSSALEAPEKDLLQGGELTKVNKGKRSLSSVHEMTDNTQLPFEESHFGLLMENLGVLEETFADSEALRLEKNIIMQLEKLGALELFNVCLTTSFGTSCISNCTHKVLEQVEENKRNHKVDDYTGKVIVHSSKRKENRRRKRGSVSIAPSSRSLPLDDNQEDPLRSSPASFAKRASNTKNKRAVIAQREVEMSKGVKVLAELEKIRTAIEEDTKQVVSLSSWAEASGVDEKVLQQQLYHGYYCRDELIRSTRSLVLYFARKYRGMGIALEDLLQVGYIGVLQGAERFDSTRGYRFSTYVQYWIRKSMSRMVAKYARGITVPWSMNKAISQIQKARKVLKNTTMKYPNDLEIAKMTGLSLDKIMSASHCLRTVSSMYRGIEYMGHMPDLSIESPEETVMKQHIKKDIHDILQSLDSRERQILILRFGLTDDHQPKSLEYIGRIFKVSKEWIRKIEKKALTKLKNETNISKLNYYLDL*