AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0967450


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0967450 MtrunA17_Chr8g0345771 92.381 525 23 8 17 532 1 517 0.0 855
Msa0967450 MtrunA17_Chr7g0276471 89.815 108 11 0 185 292 116 223 1.88e-64 217
Msa0967450 MtrunA17_Chr5g0422501 43.697 238 84 8 94 295 127 350 1.37e-47 171
Msa0967450 MtrunA17_Chr1g0178071 69.912 113 30 2 182 292 71 181 3.13e-47 167
Msa0967450 MtrunA17_Chr7g0266821 72.381 105 26 2 191 295 65 166 2.10e-45 161
Msa0967450 MtrunA17_Chr1g0198661 63.415 123 30 2 183 292 188 308 2.94e-43 158
Msa0967450 MtrunA17_Chr1g0213701 52.427 103 43 2 172 274 150 246 9.41e-28 113
Msa0967450 MtrunA17_Chr4g0012861 35.294 119 69 4 186 302 314 426 5.74e-15 78.2
Msa0967450 MtrunA17_Chr2g0281191 37.273 110 61 4 186 293 352 455 5.18e-14 75.1
Msa0967450 MtrunA17_Chr5g0432721 39.560 91 50 3 186 274 321 408 7.54e-14 74.7
Msa0967450 MtrunA17_Chr3g0107701 39.560 91 50 3 186 274 338 425 2.84e-13 72.8
Msa0967450 MtrunA17_Chr7g0244871 39.326 89 49 3 186 272 12 97 9.60e-13 64.7
Msa0967450 MtrunA17_Chr4g0046371 40.206 97 56 2 185 279 146 242 3.54e-12 68.9
Msa0967450 MtrunA17_Chr2g0282961 35.897 117 73 2 165 279 136 252 5.00e-12 68.6
Msa0967450 MtrunA17_Chr2g0326761 37.624 101 61 2 182 280 103 203 1.63e-11 67.0
Msa0967450 MtrunA17_Chr3g0115271 30.882 136 81 3 156 290 94 217 4.24e-11 65.5
Msa0967450 MtrunA17_Chr4g0028971 39.000 100 59 2 182 279 104 203 8.79e-11 64.7
Msa0967450 MtrunA17_Chr1g0199681 35.052 97 62 1 180 275 186 282 8.91e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0967450 AT2G46870.1 47.492 299 92 9 173 470 21 255 3.83e-73 235
Msa0967450 AT1G01030.1 48.136 295 91 11 182 465 51 294 1.33e-67 222
Msa0967450 AT3G61970.1 43.322 307 92 11 167 470 3 230 3.96e-65 214
Msa0967450 AT1G01030.2 84.685 111 16 1 182 291 51 161 1.30e-61 206
Msa0967450 AT4G01500.1 36.467 351 147 9 179 509 28 322 2.99e-52 181
Msa0967450 AT1G68840.2 44.700 217 94 5 94 292 85 293 1.30e-48 172
Msa0967450 AT1G68840.1 44.700 217 94 5 94 292 85 293 1.30e-48 172
Msa0967450 AT3G11580.4 65.289 121 29 2 182 291 24 142 5.44e-48 166
Msa0967450 AT3G11580.2 65.289 121 29 2 182 291 24 142 5.44e-48 166
Msa0967450 AT3G11580.5 65.289 121 29 2 182 291 24 142 5.44e-48 166
Msa0967450 AT3G11580.1 65.289 121 29 2 182 291 24 142 9.84e-48 167
Msa0967450 AT1G13260.1 42.544 228 85 7 94 292 82 292 2.52e-47 168
Msa0967450 AT5G06250.5 58.824 136 44 2 183 308 42 175 9.75e-47 164
Msa0967450 AT3G11580.3 63.710 124 32 2 179 291 21 142 1.23e-46 167
Msa0967450 AT5G06250.4 66.387 119 28 2 183 291 42 158 1.50e-46 164
Msa0967450 AT5G06250.2 66.387 119 28 2 183 291 42 158 1.52e-46 164
Msa0967450 AT5G06250.1 58.824 136 44 2 183 308 42 175 3.45e-46 163
Msa0967450 AT5G06250.3 58.824 136 44 2 183 308 42 175 3.65e-46 163
Msa0967450 AT2G36080.3 69.027 113 30 2 182 291 33 143 6.17e-45 158
Msa0967450 AT2G36080.4 67.826 115 32 2 180 291 31 143 6.27e-45 156
Msa0967450 AT2G36080.2 67.826 115 32 2 180 291 31 143 6.27e-45 156
Msa0967450 AT2G36080.1 69.027 113 30 2 182 291 33 143 7.39e-45 159
Msa0967450 AT1G25560.1 63.866 119 33 2 183 293 191 307 2.35e-44 160
Msa0967450 AT3G25730.1 42.342 222 91 7 94 292 82 289 6.90e-44 159
Msa0967450 AT1G50680.1 32.271 251 123 9 65 272 7 253 8.53e-26 108
Msa0967450 AT1G51120.1 34.634 205 102 6 97 272 70 271 1.83e-24 105
Msa0967450 AT4G32010.1 37.273 110 61 4 186 293 285 388 7.58e-15 78.2
Msa0967450 AT4G32010.2 37.273 110 61 4 186 293 281 384 8.03e-15 78.2
Msa0967450 AT2G30470.1 39.560 91 50 3 186 274 294 381 5.29e-14 75.5
Msa0967450 AT1G35240.1 40.496 121 63 5 187 305 126 239 4.20e-13 72.4
Msa0967450 AT1G35520.1 39.669 121 64 5 187 305 126 239 2.36e-12 70.1
Msa0967450 AT1G34310.1 38.843 121 65 5 187 305 126 239 4.23e-12 69.3
Msa0967450 AT2G33860.1 40.217 92 54 1 185 275 157 248 1.58e-11 67.4
Msa0967450 AT1G35540.1 38.843 121 65 5 187 305 126 239 2.07e-11 67.0
Msa0967450 AT1G34410.1 38.017 121 66 5 187 305 126 239 2.60e-11 66.6
Msa0967450 AT5G60450.2 29.801 151 97 2 132 281 106 248 6.93e-11 65.5
Msa0967450 AT5G60450.1 29.801 151 97 2 132 281 130 272 7.47e-11 65.5

Find 76 sgRNAs with CRISPR-Local

Find 224 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAGATTTAGATACTCTTAT+TGG 0.204888 6_3:+97062823 Msa0967450:CDS
TTATCAAGTCAAATTCTTCT+TGG 0.232204 6_3:-97062137 None:intergenic
ATGTTTCCATTTCATCAATA+TGG 0.246411 6_3:+97063197 Msa0967450:CDS
TTTAAAGCAAATAGATTTCA+TGG 0.253920 6_3:+97062530 Msa0967450:CDS
AACAACAATATTCTATTAGA+TGG 0.265622 6_3:+97063060 Msa0967450:CDS
GCAGCATCTAAAGGAGGATT+AGG 0.296328 6_3:+97062456 Msa0967450:CDS
ATAGAATATTGTTGTTGATT+AGG 0.302183 6_3:-97063053 None:intergenic
AATTCATCTGATTGTGTAAA+GGG 0.302465 6_3:-97063163 None:intergenic
CTACTAATGGTGCTGCAAAA+AGG 0.355470 6_3:+97063456 Msa0967450:CDS
GCTGCTGAATTGTGAGATTC+TGG 0.358440 6_3:-97062438 None:intergenic
GGCATAGGTTGTTTATAGAT+TGG 0.359581 6_3:+97062958 Msa0967450:CDS
TTATTCACAAGAAGAATTAG+AGG 0.367007 6_3:+97062191 Msa0967450:CDS
CCACCACCATATTGATGAAA+TGG 0.378629 6_3:-97063203 None:intergenic
GAAGATAAAGAGAAATTAGA+AGG 0.384050 6_3:-97062309 None:intergenic
TGCTGATGTTGTAACCTTTG+TGG 0.393602 6_3:-97063125 None:intergenic
TGTTCTTGTTGTTGTGGAAC+AGG 0.398968 6_3:-97062606 None:intergenic
CAACAAGAAGGAGGAGGAGG+AGG 0.405771 6_3:+97063338 Msa0967450:CDS
ATTTGACTTGATAATTATCA+TGG 0.414547 6_3:+97062146 Msa0967450:CDS
CAAAGCTATGTTATGACAAA+AGG 0.424983 6_3:+97062855 Msa0967450:CDS
GCGGCGTCGGCGAATTGTTT+AGG 0.427168 6_3:+97062937 Msa0967450:CDS
CTTTAAATTTGTGAAATTTG+AGG 0.440342 6_3:-97062514 None:intergenic
TGTTGTAACCTTTGTGGTGT+TGG 0.444187 6_3:-97063119 None:intergenic
TTCAACAAGTGATGATAACT+TGG 0.444286 6_3:+97063520 Msa0967450:CDS
GCTACTACTAGTACTACTAA+TGG 0.446131 6_3:+97063443 Msa0967450:CDS
TGTTGGGAAACTAAACCGTT+TGG 0.462142 6_3:+97062701 Msa0967450:CDS
TGATGATGATAATGAGAAAC+AGG 0.463873 6_3:-97063398 None:intergenic
TGTTGATTAGGAAGAAAGAA+AGG 0.468194 6_3:-97063041 None:intergenic
AAATTCATCTGATTGTGTAA+AGG 0.468921 6_3:-97063164 None:intergenic
TCATTTGATGTTGAATCAAG+TGG 0.470685 6_3:-97062756 None:intergenic
ACCATCACTTCAACATTTGA+AGG 0.471635 6_3:+97063562 Msa0967450:CDS
AACCTTTGTGGTGTTGGATA+AGG 0.473019 6_3:-97063113 None:intergenic
GTTGTAACACCAAGTGATGT+TGG 0.474361 6_3:+97062684 Msa0967450:CDS
ACAACAATATTCTATTAGAT+GGG 0.482618 6_3:+97063061 Msa0967450:CDS
CATTACTAGTTAAATTTCCA+TGG 0.483330 6_3:-97063421 None:intergenic
TTGCATCTTGATGTTGGTGA+TGG 0.485306 6_3:-97062488 None:intergenic
CAGCATCTAAAGGAGGATTA+GGG 0.488321 6_3:+97062457 Msa0967450:CDS
CAGCAACAAGAAGGAGGAGG+AGG 0.488402 6_3:+97063335 Msa0967450:CDS
AAGATAGAAATGGAAAATTG+TGG 0.489600 6_3:+97062802 Msa0967450:CDS
TTGTAACACCAAGTGATGTT+GGG 0.490137 6_3:+97062685 Msa0967450:CDS
TCTTGTTGTTCTTGTTGTTG+TGG 0.492978 6_3:-97062612 None:intergenic
TCGGCGAATTGTTTAGGCAT+AGG 0.495937 6_3:+97062943 Msa0967450:CDS
TTTCTCATCAACAAAATCAA+TGG 0.499739 6_3:+97062385 Msa0967450:CDS
CACAATTCAGCAGCATCTAA+AGG 0.501419 6_3:+97062447 Msa0967450:CDS
CTTCCTTGAGGCATTGATGA+TGG 0.504465 6_3:-97063299 None:intergenic
CCATTTCATCAATATGGTGG+TGG 0.507266 6_3:+97063203 Msa0967450:CDS
AACATCAACAAGATTTGAAG+AGG 0.528740 6_3:+97063616 Msa0967450:CDS
CATCAACAAAATCAATGGCT+AGG 0.531892 6_3:+97062390 Msa0967450:CDS
GATAAAGAGAAATTAGAAGG+TGG 0.541995 6_3:-97062306 None:intergenic
AAGGTTGTTTGGTGTGAACA+TGG 0.542303 6_3:+97063481 Msa0967450:CDS
GCTATGTTATGACAAAAGGT+TGG 0.544721 6_3:+97062859 Msa0967450:CDS
TTTAGTTTCCCAACATCACT+TGG 0.546847 6_3:-97062693 None:intergenic
GATTCAACATCAAATGAGAA+AGG 0.548994 6_3:+97062762 Msa0967450:CDS
TTATGATGATGAGTTGTTGA+AGG 0.549913 6_3:-97062339 None:intergenic
AGTGATGGTACTATTGAAGA+AGG 0.553751 6_3:-97063548 None:intergenic
ACCTTCAAATGTTGAAGTGA+TGG 0.554721 6_3:-97063563 None:intergenic
GAAAGTGTTTCTTCATGATG+AGG 0.555132 6_3:-97063587 None:intergenic
TTTCCATTTCATCAATATGG+TGG 0.556128 6_3:+97063200 Msa0967450:CDS
TTTGGTGTGAACATGGAGTG+TGG 0.563933 6_3:+97063488 Msa0967450:CDS
GTGAAAAGTGTTGCTGATGA+AGG 0.570944 6_3:-97063017 None:intergenic
GTTTCATTTCAACGCGGCGT+CGG 0.571504 6_3:+97062924 Msa0967450:CDS
AGGTTGTTGCATCTTGATGT+TGG 0.573287 6_3:-97062494 None:intergenic
TGAGGCATTGATGATGGTGC+TGG 0.585946 6_3:-97063293 None:intergenic
AGTACAAGACAGCAACAAGA+AGG 0.600583 6_3:+97063326 Msa0967450:CDS
CAATATTCTATTAGATGGGG+AGG 0.609587 6_3:+97063065 Msa0967450:CDS
AGACAGCAACAAGAAGGAGG+AGG 0.619946 6_3:+97063332 Msa0967450:CDS
GATTTCATGGAATTGTCACT+AGG 0.623329 6_3:+97062543 Msa0967450:CDS
TTCCTTATCCAACACCACAA+AGG 0.633231 6_3:+97063111 Msa0967450:CDS
ACAAGACAGCAACAAGAAGG+AGG 0.633565 6_3:+97063329 Msa0967450:CDS
CAACAATATTCTATTAGATG+GGG 0.645043 6_3:+97063062 Msa0967450:CDS
GCACCATCATCAATGCCTCA+AGG 0.646120 6_3:+97063296 Msa0967450:CDS
TCTCATTATCATCATCACCA+TGG 0.646213 6_3:+97063404 Msa0967450:CDS
CTTGTACTCAAGCTTCCTTG+AGG 0.650771 6_3:-97063311 None:intergenic
TCTTGTTGTTGTGGAACAGG+AGG 0.666596 6_3:-97062603 None:intergenic
GGTGTGAACATGGAGTGTGG+TGG 0.666596 6_3:+97063491 Msa0967450:CDS
AATTCAGCAGCATCTAAAGG+AGG 0.671535 6_3:+97062450 Msa0967450:CDS
GACATTGTTTCATTTCAACG+CGG 0.724243 6_3:+97062918 Msa0967450:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTGAAAGAAAAAAATATATT+GGG - chr6_3:97061965-97061984 None:intergenic 10.0%
!! TTTGAAAGAAAAAAATATAT+TGG - chr6_3:97061966-97061985 None:intergenic 10.0%
!! TTGAAAGAAAAAAATATATT+GGG - chr6_3:97061965-97061984 None:intergenic 10.0%
!! TTTGAAAGAAAAAAATATAT+TGG - chr6_3:97061966-97061985 None:intergenic 10.0%
!! TGGGTTATTAAAAAAAATAT+GGG - chr6_3:97061946-97061965 None:intergenic 15.0%
!! TTGGGTTATTAAAAAAAATA+TGG - chr6_3:97061947-97061966 None:intergenic 15.0%
!! ATTTGACAAAATTAATAAAG+TGG - chr6_3:97061994-97062013 None:intergenic 15.0%
!! AAAAATATTGTATATGATGA+GGG - chr6_3:97062053-97062072 None:intergenic 15.0%
!! AAAAAATATTGTATATGATG+AGG - chr6_3:97062054-97062073 None:intergenic 15.0%
!! TGGGTTATTAAAAAAAATAT+GGG - chr6_3:97061946-97061965 None:intergenic 15.0%
!! TTGGGTTATTAAAAAAAATA+TGG - chr6_3:97061947-97061966 None:intergenic 15.0%
!! ATTTGACAAAATTAATAAAG+TGG - chr6_3:97061994-97062013 None:intergenic 15.0%
!! AAAAATATTGTATATGATGA+GGG - chr6_3:97062053-97062072 None:intergenic 15.0%
!! AAAAAATATTGTATATGATG+AGG - chr6_3:97062054-97062073 None:intergenic 15.0%
!! AAAAGAATTACCAAGAAAAA+TGG - chr6_3:97061890-97061909 None:intergenic 20.0%
!! GGGTTATTAAAAAAAATATG+GGG - chr6_3:97061945-97061964 None:intergenic 20.0%
!! AAAATATTGTATATGATGAG+GGG - chr6_3:97062052-97062071 None:intergenic 20.0%
!!! ATTTGACTTGATAATTATCA+TGG + chr6_3:97062146-97062165 Msa0967450:CDS 20.0%
!! CTTTAAATTTGTGAAATTTG+AGG - chr6_3:97062517-97062536 None:intergenic 20.0%
!!! TTTAAAGCAAATAGATTTCA+TGG + chr6_3:97062530-97062549 Msa0967450:CDS 20.0%
!!! GTTTTTTCTCTTTAACAAAA+CGG - chr6_3:97062887-97062906 None:intergenic 20.0%
!!! ATAGAATATTGTTGTTGATT+AGG - chr6_3:97063056-97063075 None:intergenic 20.0%
!! AACAACAATATTCTATTAGA+TGG + chr6_3:97063060-97063079 Msa0967450:CDS 20.0%
!! ACAACAATATTCTATTAGAT+GGG + chr6_3:97063061-97063080 Msa0967450:CDS 20.0%
!! AAAAGAATTACCAAGAAAAA+TGG - chr6_3:97061890-97061909 None:intergenic 20.0%
!! GGGTTATTAAAAAAAATATG+GGG - chr6_3:97061945-97061964 None:intergenic 20.0%
!! AAAATATTGTATATGATGAG+GGG - chr6_3:97062052-97062071 None:intergenic 20.0%
!!! ATTTGACTTGATAATTATCA+TGG + chr6_3:97062146-97062165 Msa0967450:CDS 20.0%
!! CTTTAAATTTGTGAAATTTG+AGG - chr6_3:97062517-97062536 None:intergenic 20.0%
!!! TTTAAAGCAAATAGATTTCA+TGG + chr6_3:97062530-97062549 Msa0967450:CDS 20.0%
!!! GTTTTTTCTCTTTAACAAAA+CGG - chr6_3:97062887-97062906 None:intergenic 20.0%
!!! ATAGAATATTGTTGTTGATT+AGG - chr6_3:97063056-97063075 None:intergenic 20.0%
!! AACAACAATATTCTATTAGA+TGG + chr6_3:97063060-97063079 Msa0967450:CDS 20.0%
!! ACAACAATATTCTATTAGAT+GGG + chr6_3:97063061-97063080 Msa0967450:CDS 20.0%
!!! ATGGTTTTGTTTTTGTCTTT+AGG + chr6_3:97061749-97061768 Msa0967450:intron 25.0%
!!! TGGTTTTGTTTTTGTCTTTA+GGG + chr6_3:97061750-97061769 Msa0967450:intron 25.0%
! AAAGGAAAACAAAGAAAAAG+AGG - chr6_3:97061824-97061843 None:intergenic 25.0%
!! TATTTTATGGGAGAATTATG+AGG - chr6_3:97061851-97061870 None:intergenic 25.0%
!! TGATGAGGAAGATATTTTAT+GGG - chr6_3:97061863-97061882 None:intergenic 25.0%
!! ATGATGAGGAAGATATTTTA+TGG - chr6_3:97061864-97061883 None:intergenic 25.0%
! AAGAAAAATGGTATATGATG+AGG - chr6_3:97061878-97061897 None:intergenic 25.0%
!!! TCATCATATACCATTTTTCT+TGG + chr6_3:97061877-97061896 Msa0967450:intron 25.0%
! TTATCAAGTCAAATTCTTCT+TGG - chr6_3:97062140-97062159 None:intergenic 25.0%
! TTATTCACAAGAAGAATTAG+AGG + chr6_3:97062191-97062210 Msa0967450:CDS 25.0%
! GAAGATAAAGAGAAATTAGA+AGG - chr6_3:97062312-97062331 None:intergenic 25.0%
! TTTCTCATCAACAAAATCAA+TGG + chr6_3:97062385-97062404 Msa0967450:CDS 25.0%
!!! CTGAATTTTGAAGATAGAAA+TGG + chr6_3:97062792-97062811 Msa0967450:CDS 25.0%
! AAGATAGAAATGGAAAATTG+TGG + chr6_3:97062802-97062821 Msa0967450:CDS 25.0%
! CAACAATATTCTATTAGATG+GGG + chr6_3:97063062-97063081 Msa0967450:CDS 25.0%
! AATTCATCTGATTGTGTAAA+GGG - chr6_3:97063166-97063185 None:intergenic 25.0%
! AAATTCATCTGATTGTGTAA+AGG - chr6_3:97063167-97063186 None:intergenic 25.0%
! ATGTTTCCATTTCATCAATA+TGG + chr6_3:97063197-97063216 Msa0967450:CDS 25.0%
! CTCATATAAAAAACTGAACT+TGG - chr6_3:97063266-97063285 None:intergenic 25.0%
! CATTACTAGTTAAATTTCCA+TGG - chr6_3:97063424-97063443 None:intergenic 25.0%
!! TTCATTTTCATCATTGTTGT+TGG - chr6_3:97063706-97063725 None:intergenic 25.0%
!!! ATGGTTTTGTTTTTGTCTTT+AGG + chr6_3:97061749-97061768 Msa0967450:intron 25.0%
!!! TGGTTTTGTTTTTGTCTTTA+GGG + chr6_3:97061750-97061769 Msa0967450:intron 25.0%
! AAAGGAAAACAAAGAAAAAG+AGG - chr6_3:97061824-97061843 None:intergenic 25.0%
!! TATTTTATGGGAGAATTATG+AGG - chr6_3:97061851-97061870 None:intergenic 25.0%
!! TGATGAGGAAGATATTTTAT+GGG - chr6_3:97061863-97061882 None:intergenic 25.0%
!! ATGATGAGGAAGATATTTTA+TGG - chr6_3:97061864-97061883 None:intergenic 25.0%
! AAGAAAAATGGTATATGATG+AGG - chr6_3:97061878-97061897 None:intergenic 25.0%
!!! TCATCATATACCATTTTTCT+TGG + chr6_3:97061877-97061896 Msa0967450:intron 25.0%
! TTATCAAGTCAAATTCTTCT+TGG - chr6_3:97062140-97062159 None:intergenic 25.0%
! TTATTCACAAGAAGAATTAG+AGG + chr6_3:97062191-97062210 Msa0967450:CDS 25.0%
! GAAGATAAAGAGAAATTAGA+AGG - chr6_3:97062312-97062331 None:intergenic 25.0%
! TTTCTCATCAACAAAATCAA+TGG + chr6_3:97062385-97062404 Msa0967450:CDS 25.0%
!!! CTGAATTTTGAAGATAGAAA+TGG + chr6_3:97062792-97062811 Msa0967450:CDS 25.0%
! AAGATAGAAATGGAAAATTG+TGG + chr6_3:97062802-97062821 Msa0967450:CDS 25.0%
! CAACAATATTCTATTAGATG+GGG + chr6_3:97063062-97063081 Msa0967450:CDS 25.0%
! AATTCATCTGATTGTGTAAA+GGG - chr6_3:97063166-97063185 None:intergenic 25.0%
! AAATTCATCTGATTGTGTAA+AGG - chr6_3:97063167-97063186 None:intergenic 25.0%
! ATGTTTCCATTTCATCAATA+TGG + chr6_3:97063197-97063216 Msa0967450:CDS 25.0%
! CTCATATAAAAAACTGAACT+TGG - chr6_3:97063266-97063285 None:intergenic 25.0%
! CATTACTAGTTAAATTTCCA+TGG - chr6_3:97063424-97063443 None:intergenic 25.0%
!! TTCATTTTCATCATTGTTGT+TGG - chr6_3:97063706-97063725 None:intergenic 25.0%
CTTCTCTTAGTCAAATATGA+AGG + chr6_3:97061780-97061799 Msa0967450:intron 30.0%
GATAAAGAGAAATTAGAAGG+TGG - chr6_3:97062309-97062328 None:intergenic 30.0%
! TTATGATGATGAGTTGTTGA+AGG - chr6_3:97062342-97062361 None:intergenic 30.0%
!! TGTTCTTTTTCATGTGTACT+AGG - chr6_3:97062651-97062670 None:intergenic 30.0%
!!! GTTGTTTTGGTATAACCAAA+CGG - chr6_3:97062719-97062738 None:intergenic 30.0%
!! TACTTTTCAGCATGTTGTTT+TGG - chr6_3:97062732-97062751 None:intergenic 30.0%
TCATTTGATGTTGAATCAAG+TGG - chr6_3:97062759-97062778 None:intergenic 30.0%
GATTCAACATCAAATGAGAA+AGG + chr6_3:97062762-97062781 Msa0967450:CDS 30.0%
GGAGATTTAGATACTCTTAT+TGG + chr6_3:97062823-97062842 Msa0967450:CDS 30.0%
! CTTTTGTCATAACATAGCTT+TGG - chr6_3:97062857-97062876 None:intergenic 30.0%
CAAAGCTATGTTATGACAAA+AGG + chr6_3:97062855-97062874 Msa0967450:CDS 30.0%
AAAGAGAAAAAACTTGATGC+TGG + chr6_3:97062894-97062913 Msa0967450:CDS 30.0%
! TGTTGATTAGGAAGAAAGAA+AGG - chr6_3:97063044-97063063 None:intergenic 30.0%
TTTCCATTTCATCAATATGG+TGG + chr6_3:97063200-97063219 Msa0967450:CDS 30.0%
! TGATGATGATAATGAGAAAC+AGG - chr6_3:97063401-97063420 None:intergenic 30.0%
TTCAACAAGTGATGATAACT+TGG + chr6_3:97063520-97063539 Msa0967450:CDS 30.0%
AACATCAACAAGATTTGAAG+AGG + chr6_3:97063616-97063635 Msa0967450:CDS 30.0%
! GAAGAAGCTTCAATGATTTT+TGG + chr6_3:97063650-97063669 Msa0967450:CDS 30.0%
CTTCTCTTAGTCAAATATGA+AGG + chr6_3:97061780-97061799 Msa0967450:intron 30.0%
GATAAAGAGAAATTAGAAGG+TGG - chr6_3:97062309-97062328 None:intergenic 30.0%
! TTATGATGATGAGTTGTTGA+AGG - chr6_3:97062342-97062361 None:intergenic 30.0%
!! TGTTCTTTTTCATGTGTACT+AGG - chr6_3:97062651-97062670 None:intergenic 30.0%
!!! GTTGTTTTGGTATAACCAAA+CGG - chr6_3:97062719-97062738 None:intergenic 30.0%
!! TACTTTTCAGCATGTTGTTT+TGG - chr6_3:97062732-97062751 None:intergenic 30.0%
TCATTTGATGTTGAATCAAG+TGG - chr6_3:97062759-97062778 None:intergenic 30.0%
GATTCAACATCAAATGAGAA+AGG + chr6_3:97062762-97062781 Msa0967450:CDS 30.0%
GGAGATTTAGATACTCTTAT+TGG + chr6_3:97062823-97062842 Msa0967450:CDS 30.0%
! CTTTTGTCATAACATAGCTT+TGG - chr6_3:97062857-97062876 None:intergenic 30.0%
CAAAGCTATGTTATGACAAA+AGG + chr6_3:97062855-97062874 Msa0967450:CDS 30.0%
AAAGAGAAAAAACTTGATGC+TGG + chr6_3:97062894-97062913 Msa0967450:CDS 30.0%
! TGTTGATTAGGAAGAAAGAA+AGG - chr6_3:97063044-97063063 None:intergenic 30.0%
TTTCCATTTCATCAATATGG+TGG + chr6_3:97063200-97063219 Msa0967450:CDS 30.0%
! TGATGATGATAATGAGAAAC+AGG - chr6_3:97063401-97063420 None:intergenic 30.0%
TTCAACAAGTGATGATAACT+TGG + chr6_3:97063520-97063539 Msa0967450:CDS 30.0%
AACATCAACAAGATTTGAAG+AGG + chr6_3:97063616-97063635 Msa0967450:CDS 30.0%
! GAAGAAGCTTCAATGATTTT+TGG + chr6_3:97063650-97063669 Msa0967450:CDS 30.0%
AAAGAGGTTCATGTAAGAGT+CGG - chr6_3:97061808-97061827 None:intergenic 35.0%
ATATTGTATATGATGAGGGG+AGG - chr6_3:97062049-97062068 None:intergenic 35.0%
CATCAACAAAATCAATGGCT+AGG + chr6_3:97062390-97062409 Msa0967450:CDS 35.0%
GATTTCATGGAATTGTCACT+AGG + chr6_3:97062543-97062562 Msa0967450:CDS 35.0%
!! TCTTGTTGTTCTTGTTGTTG+TGG - chr6_3:97062615-97062634 None:intergenic 35.0%
TTGTAACACCAAGTGATGTT+GGG + chr6_3:97062685-97062704 Msa0967450:CDS 35.0%
! TTTAGTTTCCCAACATCACT+TGG - chr6_3:97062696-97062715 None:intergenic 35.0%
GCTATGTTATGACAAAAGGT+TGG + chr6_3:97062859-97062878 Msa0967450:CDS 35.0%
GACATTGTTTCATTTCAACG+CGG + chr6_3:97062918-97062937 Msa0967450:CDS 35.0%
GGCATAGGTTGTTTATAGAT+TGG + chr6_3:97062958-97062977 Msa0967450:CDS 35.0%
CAATATTCTATTAGATGGGG+AGG + chr6_3:97063065-97063084 Msa0967450:CDS 35.0%
TCTCATTATCATCATCACCA+TGG + chr6_3:97063404-97063423 Msa0967450:CDS 35.0%
GCTACTACTAGTACTACTAA+TGG + chr6_3:97063443-97063462 Msa0967450:CDS 35.0%
GCAAAAAGGTTAAGGTTGTT+TGG + chr6_3:97063470-97063489 Msa0967450:CDS 35.0%
AGTGATGGTACTATTGAAGA+AGG - chr6_3:97063551-97063570 None:intergenic 35.0%
ACCATCACTTCAACATTTGA+AGG + chr6_3:97063562-97063581 Msa0967450:CDS 35.0%
ACCTTCAAATGTTGAAGTGA+TGG - chr6_3:97063566-97063585 None:intergenic 35.0%
!! GAAAGTGTTTCTTCATGATG+AGG - chr6_3:97063590-97063609 None:intergenic 35.0%
AAAGAGGTTCATGTAAGAGT+CGG - chr6_3:97061808-97061827 None:intergenic 35.0%
ATATTGTATATGATGAGGGG+AGG - chr6_3:97062049-97062068 None:intergenic 35.0%
CATCAACAAAATCAATGGCT+AGG + chr6_3:97062390-97062409 Msa0967450:CDS 35.0%
GATTTCATGGAATTGTCACT+AGG + chr6_3:97062543-97062562 Msa0967450:CDS 35.0%
!! TCTTGTTGTTCTTGTTGTTG+TGG - chr6_3:97062615-97062634 None:intergenic 35.0%
TTGTAACACCAAGTGATGTT+GGG + chr6_3:97062685-97062704 Msa0967450:CDS 35.0%
! TTTAGTTTCCCAACATCACT+TGG - chr6_3:97062696-97062715 None:intergenic 35.0%
GCTATGTTATGACAAAAGGT+TGG + chr6_3:97062859-97062878 Msa0967450:CDS 35.0%
GACATTGTTTCATTTCAACG+CGG + chr6_3:97062918-97062937 Msa0967450:CDS 35.0%
GGCATAGGTTGTTTATAGAT+TGG + chr6_3:97062958-97062977 Msa0967450:CDS 35.0%
CAATATTCTATTAGATGGGG+AGG + chr6_3:97063065-97063084 Msa0967450:CDS 35.0%
TCTCATTATCATCATCACCA+TGG + chr6_3:97063404-97063423 Msa0967450:CDS 35.0%
GCTACTACTAGTACTACTAA+TGG + chr6_3:97063443-97063462 Msa0967450:CDS 35.0%
GCAAAAAGGTTAAGGTTGTT+TGG + chr6_3:97063470-97063489 Msa0967450:CDS 35.0%
AGTGATGGTACTATTGAAGA+AGG - chr6_3:97063551-97063570 None:intergenic 35.0%
ACCATCACTTCAACATTTGA+AGG + chr6_3:97063562-97063581 Msa0967450:CDS 35.0%
ACCTTCAAATGTTGAAGTGA+TGG - chr6_3:97063566-97063585 None:intergenic 35.0%
!! GAAAGTGTTTCTTCATGATG+AGG - chr6_3:97063590-97063609 None:intergenic 35.0%
GGAGAATTATGAGGCTGTAA+AGG - chr6_3:97061842-97061861 None:intergenic 40.0%
CACAATTCAGCAGCATCTAA+AGG + chr6_3:97062447-97062466 Msa0967450:CDS 40.0%
AATTCAGCAGCATCTAAAGG+AGG + chr6_3:97062450-97062469 Msa0967450:CDS 40.0%
CAGCATCTAAAGGAGGATTA+GGG + chr6_3:97062457-97062476 Msa0967450:CDS 40.0%
! TTGCATCTTGATGTTGGTGA+TGG - chr6_3:97062491-97062510 None:intergenic 40.0%
AGGTTGTTGCATCTTGATGT+TGG - chr6_3:97062497-97062516 None:intergenic 40.0%
!! TGTTCTTGTTGTTGTGGAAC+AGG - chr6_3:97062609-97062628 None:intergenic 40.0%
GTTGTAACACCAAGTGATGT+TGG + chr6_3:97062684-97062703 Msa0967450:CDS 40.0%
TGTTGGGAAACTAAACCGTT+TGG + chr6_3:97062701-97062720 Msa0967450:CDS 40.0%
!! GTGAAAAGTGTTGCTGATGA+AGG - chr6_3:97063020-97063039 None:intergenic 40.0%
TTCCTTATCCAACACCACAA+AGG + chr6_3:97063111-97063130 Msa0967450:CDS 40.0%
! AACCTTTGTGGTGTTGGATA+AGG - chr6_3:97063116-97063135 None:intergenic 40.0%
TGTTGTAACCTTTGTGGTGT+TGG - chr6_3:97063122-97063141 None:intergenic 40.0%
TGCTGATGTTGTAACCTTTG+TGG - chr6_3:97063128-97063147 None:intergenic 40.0%
CCACCACCATATTGATGAAA+TGG - chr6_3:97063206-97063225 None:intergenic 40.0%
CCATTTCATCAATATGGTGG+TGG + chr6_3:97063203-97063222 Msa0967450:CDS 40.0%
AGTACAAGACAGCAACAAGA+AGG + chr6_3:97063326-97063345 Msa0967450:CDS 40.0%
!! CTACTAATGGTGCTGCAAAA+AGG + chr6_3:97063456-97063475 Msa0967450:CDS 40.0%
!! ATGGTGCTGCAAAAAGGTTA+AGG + chr6_3:97063462-97063481 Msa0967450:CDS 40.0%
!! AAGGTTGTTTGGTGTGAACA+TGG + chr6_3:97063481-97063500 Msa0967450:CDS 40.0%
GGAGAATTATGAGGCTGTAA+AGG - chr6_3:97061842-97061861 None:intergenic 40.0%
CACAATTCAGCAGCATCTAA+AGG + chr6_3:97062447-97062466 Msa0967450:CDS 40.0%
AATTCAGCAGCATCTAAAGG+AGG + chr6_3:97062450-97062469 Msa0967450:CDS 40.0%
CAGCATCTAAAGGAGGATTA+GGG + chr6_3:97062457-97062476 Msa0967450:CDS 40.0%
! TTGCATCTTGATGTTGGTGA+TGG - chr6_3:97062491-97062510 None:intergenic 40.0%
AGGTTGTTGCATCTTGATGT+TGG - chr6_3:97062497-97062516 None:intergenic 40.0%
!! TGTTCTTGTTGTTGTGGAAC+AGG - chr6_3:97062609-97062628 None:intergenic 40.0%
GTTGTAACACCAAGTGATGT+TGG + chr6_3:97062684-97062703 Msa0967450:CDS 40.0%
TGTTGGGAAACTAAACCGTT+TGG + chr6_3:97062701-97062720 Msa0967450:CDS 40.0%
!! GTGAAAAGTGTTGCTGATGA+AGG - chr6_3:97063020-97063039 None:intergenic 40.0%
TTCCTTATCCAACACCACAA+AGG + chr6_3:97063111-97063130 Msa0967450:CDS 40.0%
! AACCTTTGTGGTGTTGGATA+AGG - chr6_3:97063116-97063135 None:intergenic 40.0%
TGTTGTAACCTTTGTGGTGT+TGG - chr6_3:97063122-97063141 None:intergenic 40.0%
TGCTGATGTTGTAACCTTTG+TGG - chr6_3:97063128-97063147 None:intergenic 40.0%
CCACCACCATATTGATGAAA+TGG - chr6_3:97063206-97063225 None:intergenic 40.0%
CCATTTCATCAATATGGTGG+TGG + chr6_3:97063203-97063222 Msa0967450:CDS 40.0%
AGTACAAGACAGCAACAAGA+AGG + chr6_3:97063326-97063345 Msa0967450:CDS 40.0%
!! CTACTAATGGTGCTGCAAAA+AGG + chr6_3:97063456-97063475 Msa0967450:CDS 40.0%
!! ATGGTGCTGCAAAAAGGTTA+AGG + chr6_3:97063462-97063481 Msa0967450:CDS 40.0%
!! AAGGTTGTTTGGTGTGAACA+TGG + chr6_3:97063481-97063500 Msa0967450:CDS 40.0%
GCTGCTGAATTGTGAGATTC+TGG - chr6_3:97062441-97062460 None:intergenic 45.0%
GCAGCATCTAAAGGAGGATT+AGG + chr6_3:97062456-97062475 Msa0967450:CDS 45.0%
!! TCTTGTTGTTGTGGAACAGG+AGG - chr6_3:97062606-97062625 None:intergenic 45.0%
TCGGCGAATTGTTTAGGCAT+AGG + chr6_3:97062943-97062962 Msa0967450:CDS 45.0%
!! CTTCCTTGAGGCATTGATGA+TGG - chr6_3:97063302-97063321 None:intergenic 45.0%
CTTGTACTCAAGCTTCCTTG+AGG - chr6_3:97063314-97063333 None:intergenic 45.0%
ACAAGACAGCAACAAGAAGG+AGG + chr6_3:97063329-97063348 Msa0967450:CDS 45.0%
! TTTGGTGTGAACATGGAGTG+TGG + chr6_3:97063488-97063507 Msa0967450:CDS 45.0%
GCTGCTGAATTGTGAGATTC+TGG - chr6_3:97062441-97062460 None:intergenic 45.0%
GCAGCATCTAAAGGAGGATT+AGG + chr6_3:97062456-97062475 Msa0967450:CDS 45.0%
!! TCTTGTTGTTGTGGAACAGG+AGG - chr6_3:97062606-97062625 None:intergenic 45.0%
TCGGCGAATTGTTTAGGCAT+AGG + chr6_3:97062943-97062962 Msa0967450:CDS 45.0%
!! CTTCCTTGAGGCATTGATGA+TGG - chr6_3:97063302-97063321 None:intergenic 45.0%
CTTGTACTCAAGCTTCCTTG+AGG - chr6_3:97063314-97063333 None:intergenic 45.0%
ACAAGACAGCAACAAGAAGG+AGG + chr6_3:97063329-97063348 Msa0967450:CDS 45.0%
! TTTGGTGTGAACATGGAGTG+TGG + chr6_3:97063488-97063507 Msa0967450:CDS 45.0%
!! AAAATATATAAACAAAAAAA+AGG - chr6_3:97062024-97062043 None:intergenic 5.0%
!! AAAATATATAAACAAAAAAA+AGG - chr6_3:97062024-97062043 None:intergenic 5.0%
GTTTCATTTCAACGCGGCGT+CGG + chr6_3:97062924-97062943 Msa0967450:CDS 50.0%
!! TGAGGCATTGATGATGGTGC+TGG - chr6_3:97063296-97063315 None:intergenic 50.0%
GCACCATCATCAATGCCTCA+AGG + chr6_3:97063296-97063315 Msa0967450:CDS 50.0%
AGACAGCAACAAGAAGGAGG+AGG + chr6_3:97063332-97063351 Msa0967450:CDS 50.0%
GTTTCATTTCAACGCGGCGT+CGG + chr6_3:97062924-97062943 Msa0967450:CDS 50.0%
!! TGAGGCATTGATGATGGTGC+TGG - chr6_3:97063296-97063315 None:intergenic 50.0%
GCACCATCATCAATGCCTCA+AGG + chr6_3:97063296-97063315 Msa0967450:CDS 50.0%
AGACAGCAACAAGAAGGAGG+AGG + chr6_3:97063332-97063351 Msa0967450:CDS 50.0%
CAGCAACAAGAAGGAGGAGG+AGG + chr6_3:97063335-97063354 Msa0967450:CDS 55.0%
CAACAAGAAGGAGGAGGAGG+AGG + chr6_3:97063338-97063357 Msa0967450:CDS 55.0%
GGTGTGAACATGGAGTGTGG+TGG + chr6_3:97063491-97063510 Msa0967450:CDS 55.0%
CAGCAACAAGAAGGAGGAGG+AGG + chr6_3:97063335-97063354 Msa0967450:CDS 55.0%
CAACAAGAAGGAGGAGGAGG+AGG + chr6_3:97063338-97063357 Msa0967450:CDS 55.0%
GGTGTGAACATGGAGTGTGG+TGG + chr6_3:97063491-97063510 Msa0967450:CDS 55.0%
!! GCGGCGTCGGCGAATTGTTT+AGG + chr6_3:97062937-97062956 Msa0967450:CDS 60.0%
CAAGAAGGAGGAGGAGGAGG+AGG + chr6_3:97063341-97063360 Msa0967450:CDS 60.0%
!! GCGGCGTCGGCGAATTGTTT+AGG + chr6_3:97062937-97062956 Msa0967450:CDS 60.0%
CAAGAAGGAGGAGGAGGAGG+AGG + chr6_3:97063341-97063360 Msa0967450:CDS 60.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 97061749 97063865 97061749 ID=Msa0967450;Name=Msa0967450
chr6_3 mRNA 97061749 97063865 97061749 ID=Msa0967450-mRNA-1;Parent=Msa0967450;Name=Msa0967450-mRNA-1;_AED=0.16;_eAED=0.17;_QI=0|0|0.5|1|0|0|2|150|532
chr6_3 exon 97061749 97061756 97061749 ID=Msa0967450-mRNA-1:exon:17998;Parent=Msa0967450-mRNA-1
chr6_3 exon 97062125 97063865 97062125 ID=Msa0967450-mRNA-1:exon:17999;Parent=Msa0967450-mRNA-1
chr6_3 CDS 97061749 97061756 97061749 ID=Msa0967450-mRNA-1:cds;Parent=Msa0967450-mRNA-1
chr6_3 CDS 97062125 97063715 97062125 ID=Msa0967450-mRNA-1:cds;Parent=Msa0967450-mRNA-1
chr6_3 three_prime_UTR 97063716 97063865 97063716 ID=Msa0967450-mRNA-1:three_prime_utr;Parent=Msa0967450-mRNA-1
Gene Sequence

>Msa0967450

ATGGTTTTATTTTGTGAGATCCAAGAAGAATTTGACTTGATAATTATCATGGAGTTGATGCAAGAAGTGAAAGATTATTCACAAGAAGAATTAGAGGAAGATGAAGAAGAAATCATGACAAAAACAACAAGAGATGAAGAAGAAGAAAGTAGTAGTAAGCAACAATTACAACACTGTACTTTTTCTTCTCCACCTTCTAATTTCTCTTTATCTTCTTCATCTCCTTCAACAACTCATCATCATAATCATAATCATGATGTTACAAATGTTTCTCATCAACAAAATCAATGGCTAGGAATGAATCATCATCATCATCATTCACCAGAATCTCACAATTCAGCAGCATCTAAAGGAGGATTAGGGTTATTACACCATCACCAACATCAAGATGCAACAACCTCAAATTTCACAAATTTAAAGCAAATAGATTTCATGGAATTGTCACTAGGTAACAACAATAACAAAAACAAAGATGTTATTAATGTTCCTCCTGTTCCACAACAACAAGAACAACAAGAACAAGAACAGCAACCTAGTACACATGAAAAAGAACACATGTTTGACAAAGTTGTAACACCAAGTGATGTTGGGAAACTAAACCGTTTGGTTATACCAAAACAACATGCTGAAAAGTATTTTCCACTTGATTCAACATCAAATGAGAAAGGTCTTCTTCTGAATTTTGAAGATAGAAATGGAAAATTGTGGAGATTTAGATACTCTTATTGGAACAGTAGCCAAAGCTATGTTATGACAAAAGGTTGGAGCCGTTTTGTTAAAGAGAAAAAACTTGATGCTGGTGACATTGTTTCATTTCAACGCGGCGTCGGCGAATTGTTTAGGCATAGGTTGTTTATAGATTGGAAGAGAAGATCTAATCATAATCATCATAATATTGATCCTTCATCAGCAACACTTTTCACTCCTTTCTTTCTTCCTAATCAACAACAATATTCTATTAGATGGGGAGGTGCTAATAGTAGATTTTACTCTCTTCCTTATCCAACACCACAAAGGTTACAACATCAGCAACAAAATCATCATGACCCTTTACACAATCAGATGAATTTTAATCATAACATGTTTCCATTTCATCAATATGGTGGTGGAAATGTGAATCATCAATACAATTTTCATCATCATGATCCAAGTTCAGTTTTTTATATGAGATCATTACCAGCACCATCATCAATGCCTCAAGGAAGCTTGAGTACAAGACAGCAACAAGAAGGAGGAGGAGGAGGAGGAAGCAATGTCTCAAACATGATTATTGATTCTGTTCCTGTTTCTCATTATCATCATCACCATGGAAATTTAACTAGTAATGCTACTACTAGTACTACTAATGGTGCTGCAAAAAGGTTAAGGTTGTTTGGTGTGAACATGGAGTGTGGTGGTTCTTCTTCAACAAGTGATGATAACTTGGCTTCTCCTTCTTCAATAGTACCATCACTTCAACATTTGAAGGTACCTCATCATGAAGAAACACTTTCAAGTTCAACATCAACAAGATTTGAAGAGGATAAGAGAAGAGAAGAAGCTTCAATGATTTTTGGTTTAGATACTTCTTTGCAATATCATAATTACCAACAACAATGA

Protein sequence

>Msa0967450

MVLFCEIQEEFDLIIIMELMQEVKDYSQEELEEDEEEIMTKTTRDEEEESSSKQQLQHCTFSSPPSNFSLSSSSPSTTHHHNHNHDVTNVSHQQNQWLGMNHHHHHSPESHNSAASKGGLGLLHHHQHQDATTSNFTNLKQIDFMELSLGNNNNKNKDVINVPPVPQQQEQQEQEQQPSTHEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSTSNEKGLLLNFEDRNGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGVGELFRHRLFIDWKRRSNHNHHNIDPSSATLFTPFFLPNQQQYSIRWGGANSRFYSLPYPTPQRLQHQQQNHHDPLHNQMNFNHNMFPFHQYGGGNVNHQYNFHHHDPSSVFYMRSLPAPSSMPQGSLSTRQQQEGGGGGGSNVSNMIIDSVPVSHYHHHHGNLTSNATTSTTNGAAKRLRLFGVNMECGGSSSTSDDNLASPSSIVPSLQHLKVPHHEETLSSSTSTRFEEDKRREEASMIFGLDTSLQYHNYQQQ*