AlfalfaGEDB | Msa0967450

M. sativa cultivar zhongmu-4 / Msa0967450

KEGG: -
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0009908 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0099402 GO:0140110 GO:1900618 GO:1901371 GO:1903506 GO:1905421 GO:2000024 GO:2000026 GO:2000112 GO:2001141
PFAM: PF02362.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0967450	XP_024628015.1	92.381	525	23	8	17	532	1	517	0.0	855

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0967450	sp\|O82799\|NGA1_ARATH	47.492	299	92	9	173	470	21	255	3.77e-72	235

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0967450	A0A072TYC0	92.381	525	23	8	17	532	1	517	0.0	855

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TFs/TRs:

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Gene ID	Type	Classification
Msa0967450	TF	B3

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000220	Msa0967450	0.804815	1.802527e-49	-8.615850e-47
Msa0003470	Msa0967450	0.820543	6.490465e-53	-8.615850e-47
Msa0006700	Msa0967450	0.824329	8.563640e-54	-8.615850e-47
Msa0006820	Msa0967450	0.837744	4.338710e-57	-8.615850e-47
Msa0008850	Msa0967450	0.854900	9.043258e-62	-8.615850e-47
Msa0013810	Msa0967450	0.804460	2.137321e-49	-8.615850e-47
Msa0017120	Msa0967450	0.820909	5.347074e-53	-8.615850e-47
Msa0020630	Msa0967450	0.802144	6.449841e-49	-8.615850e-47
Msa0026120	Msa0967450	0.835616	1.512337e-56	-8.615850e-47
Msa0028280	Msa0967450	0.809184	2.144843e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0967450	MtrunA17_Chr8g0345771	92.381	525	23	8	17	532	1	517	0.0	855
Msa0967450	MtrunA17_Chr7g0276471	89.815	108	11	0	185	292	116	223	1.88e-64	217
Msa0967450	MtrunA17_Chr5g0422501	43.697	238	84	8	94	295	127	350	1.37e-47	171
Msa0967450	MtrunA17_Chr1g0178071	69.912	113	30	2	182	292	71	181	3.13e-47	167
Msa0967450	MtrunA17_Chr7g0266821	72.381	105	26	2	191	295	65	166	2.10e-45	161
Msa0967450	MtrunA17_Chr1g0198661	63.415	123	30	2	183	292	188	308	2.94e-43	158
Msa0967450	MtrunA17_Chr1g0213701	52.427	103	43	2	172	274	150	246	9.41e-28	113
Msa0967450	MtrunA17_Chr4g0012861	35.294	119	69	4	186	302	314	426	5.74e-15	78.2
Msa0967450	MtrunA17_Chr2g0281191	37.273	110	61	4	186	293	352	455	5.18e-14	75.1
Msa0967450	MtrunA17_Chr5g0432721	39.560	91	50	3	186	274	321	408	7.54e-14	74.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0967450	AT2G46870.1	47.492	299	92	9	173	470	21	255	3.83e-73	235
Msa0967450	AT1G01030.1	48.136	295	91	11	182	465	51	294	1.33e-67	222
Msa0967450	AT3G61970.1	43.322	307	92	11	167	470	3	230	3.96e-65	214
Msa0967450	AT1G01030.2	84.685	111	16	1	182	291	51	161	1.30e-61	206
Msa0967450	AT4G01500.1	36.467	351	147	9	179	509	28	322	2.99e-52	181
Msa0967450	AT1G68840.2	44.700	217	94	5	94	292	85	293	1.30e-48	172
Msa0967450	AT1G68840.1	44.700	217	94	5	94	292	85	293	1.30e-48	172
Msa0967450	AT3G11580.4	65.289	121	29	2	182	291	24	142	5.44e-48	166
Msa0967450	AT3G11580.2	65.289	121	29	2	182	291	24	142	5.44e-48	166
Msa0967450	AT3G11580.5	65.289	121	29	2	182	291	24	142	5.44e-48	166

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Find 76 sgRNAs with CRISPR-Local

Find 224 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATTCATCTGATTGTGTAA+AGG	0.468921	6_3:-97063164	None:intergenic
AACAACAATATTCTATTAGA+TGG	0.265622	6_3:+97063060	Msa0967450:CDS
AACATCAACAAGATTTGAAG+AGG	0.528740	6_3:+97063616	Msa0967450:CDS
AACCTTTGTGGTGTTGGATA+AGG	0.473019	6_3:-97063113	None:intergenic
AAGATAGAAATGGAAAATTG+TGG	0.489600	6_3:+97062802	Msa0967450:CDS
AAGGTTGTTTGGTGTGAACA+TGG	0.542303	6_3:+97063481	Msa0967450:CDS
AATTCAGCAGCATCTAAAGG+AGG	0.671535	6_3:+97062450	Msa0967450:CDS
AATTCATCTGATTGTGTAAA+GGG	0.302465	6_3:-97063163	None:intergenic
ACAACAATATTCTATTAGAT+GGG	0.482618	6_3:+97063061	Msa0967450:CDS
ACAAGACAGCAACAAGAAGG+AGG	0.633565	6_3:+97063329	Msa0967450:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTTCTCTTAGTCAAATATGA+AGG	+	chr6_3:97061780-97061799	Msa0967450:intron	30.0%
GATAAAGAGAAATTAGAAGG+TGG	-	chr6_3:97062309-97062328	None:intergenic	30.0%
TCATTTGATGTTGAATCAAG+TGG	-	chr6_3:97062759-97062778	None:intergenic	30.0%
GATTCAACATCAAATGAGAA+AGG	+	chr6_3:97062762-97062781	Msa0967450:CDS	30.0%
GGAGATTTAGATACTCTTAT+TGG	+	chr6_3:97062823-97062842	Msa0967450:CDS	30.0%
CAAAGCTATGTTATGACAAA+AGG	+	chr6_3:97062855-97062874	Msa0967450:CDS	30.0%
AAAGAGAAAAAACTTGATGC+TGG	+	chr6_3:97062894-97062913	Msa0967450:CDS	30.0%
TTTCCATTTCATCAATATGG+TGG	+	chr6_3:97063200-97063219	Msa0967450:CDS	30.0%
TTCAACAAGTGATGATAACT+TGG	+	chr6_3:97063520-97063539	Msa0967450:CDS	30.0%
AACATCAACAAGATTTGAAG+AGG	+	chr6_3:97063616-97063635	Msa0967450:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_3	gene	97061749	97063865	97061749	ID=Msa0967450;Name=Msa0967450
chr6_3	mRNA	97061749	97063865	97061749	ID=Msa0967450-mRNA-1;Parent=Msa0967450;Name=Msa0967450-mRNA-1;_AED=0.16;_eAED=0.17;_QI=0\|0\|0.5\|1\|0\|0\|2\|150\|532
chr6_3	exon	97061749	97061756	97061749	ID=Msa0967450-mRNA-1:exon:17998;Parent=Msa0967450-mRNA-1
chr6_3	exon	97062125	97063865	97062125	ID=Msa0967450-mRNA-1:exon:17999;Parent=Msa0967450-mRNA-1
chr6_3	CDS	97061749	97061756	97061749	ID=Msa0967450-mRNA-1:cds;Parent=Msa0967450-mRNA-1
chr6_3	CDS	97062125	97063715	97062125	ID=Msa0967450-mRNA-1:cds;Parent=Msa0967450-mRNA-1
chr6_3	three_prime_UTR	97063716	97063865	97063716	ID=Msa0967450-mRNA-1:three_prime_utr;Parent=Msa0967450-mRNA-1

Gene Sequence

>Msa0967450

ATGGTTTTATTTTGTGAGATCCAAGAAGAATTTGACTTGATAATTATCATGGAGTTGATGCAAGAAGTGAAAGATTATTCACAAGAAGAATTAGAGGAAGATGAAGAAGAAATCATGACAAAAACAACAAGAGATGAAGAAGAAGAAAGTAGTAGTAAGCAACAATTACAACACTGTACTTTTTCTTCTCCACCTTCTAATTTCTCTTTATCTTCTTCATCTCCTTCAACAACTCATCATCATAATCATAATCATGATGTTACAAATGTTTCTCATCAACAAAATCAATGGCTAGGAATGAATCATCATCATCATCATTCACCAGAATCTCACAATTCAGCAGCATCTAAAGGAGGATTAGGGTTATTACACCATCACCAACATCAAGATGCAACAACCTCAAATTTCACAAATTTAAAGCAAATAGATTTCATGGAATTGTCACTAGGTAACAACAATAACAAAAACAAAGATGTTATTAATGTTCCTCCTGTTCCACAACAACAAGAACAACAAGAACAAGAACAGCAACCTAGTACACATGAAAAAGAACACATGTTTGACAAAGTTGTAACACCAAGTGATGTTGGGAAACTAAACCGTTTGGTTATACCAAAACAACATGCTGAAAAGTATTTTCCACTTGATTCAACATCAAATGAGAAAGGTCTTCTTCTGAATTTTGAAGATAGAAATGGAAAATTGTGGAGATTTAGATACTCTTATTGGAACAGTAGCCAAAGCTATGTTATGACAAAAGGTTGGAGCCGTTTTGTTAAAGAGAAAAAACTTGATGCTGGTGACATTGTTTCATTTCAACGCGGCGTCGGCGAATTGTTTAGGCATAGGTTGTTTATAGATTGGAAGAGAAGATCTAATCATAATCATCATAATATTGATCCTTCATCAGCAACACTTTTCACTCCTTTCTTTCTTCCTAATCAACAACAATATTCTATTAGATGGGGAGGTGCTAATAGTAGATTTTACTCTCTTCCTTATCCAACACCACAAAGGTTACAACATCAGCAACAAAATCATCATGACCCTTTACACAATCAGATGAATTTTAATCATAACATGTTTCCATTTCATCAATATGGTGGTGGAAATGTGAATCATCAATACAATTTTCATCATCATGATCCAAGTTCAGTTTTTTATATGAGATCATTACCAGCACCATCATCAATGCCTCAAGGAAGCTTGAGTACAAGACAGCAACAAGAAGGAGGAGGAGGAGGAGGAAGCAATGTCTCAAACATGATTATTGATTCTGTTCCTGTTTCTCATTATCATCATCACCATGGAAATTTAACTAGTAATGCTACTACTAGTACTACTAATGGTGCTGCAAAAAGGTTAAGGTTGTTTGGTGTGAACATGGAGTGTGGTGGTTCTTCTTCAACAAGTGATGATAACTTGGCTTCTCCTTCTTCAATAGTACCATCACTTCAACATTTGAAGGTACCTCATCATGAAGAAACACTTTCAAGTTCAACATCAACAAGATTTGAAGAGGATAAGAGAAGAGAAGAAGCTTCAATGATTTTTGGTTTAGATACTTCTTTGCAATATCATAATTACCAACAACAATGA

Protein sequence

>Msa0967450

MVLFCEIQEEFDLIIIMELMQEVKDYSQEELEEDEEEIMTKTTRDEEEESSSKQQLQHCTFSSPPSNFSLSSSSPSTTHHHNHNHDVTNVSHQQNQWLGMNHHHHHSPESHNSAASKGGLGLLHHHQHQDATTSNFTNLKQIDFMELSLGNNNNKNKDVINVPPVPQQQEQQEQEQQPSTHEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSTSNEKGLLLNFEDRNGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGVGELFRHRLFIDWKRRSNHNHHNIDPSSATLFTPFFLPNQQQYSIRWGGANSRFYSLPYPTPQRLQHQQQNHHDPLHNQMNFNHNMFPFHQYGGGNVNHQYNFHHHDPSSVFYMRSLPAPSSMPQGSLSTRQQQEGGGGGGSNVSNMIIDSVPVSHYHHHHGNLTSNATTSTTNGAAKRLRLFGVNMECGGSSSTSDDNLASPSSIVPSLQHLKVPHHEETLSSSTSTRFEEDKRREEASMIFGLDTSLQYHNYQQQ*