AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0389830


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0389830 MtrunA17_Chr8g0345771 92.381 525 23 8 17 532 1 517 0.0 855
Msa0389830 MtrunA17_Chr7g0276471 89.815 108 11 0 185 292 116 223 1.88e-64 217
Msa0389830 MtrunA17_Chr5g0422501 43.697 238 84 8 94 295 127 350 1.37e-47 171
Msa0389830 MtrunA17_Chr1g0178071 69.912 113 30 2 182 292 71 181 3.13e-47 167
Msa0389830 MtrunA17_Chr7g0266821 72.381 105 26 2 191 295 65 166 2.10e-45 161
Msa0389830 MtrunA17_Chr1g0198661 63.415 123 30 2 183 292 188 308 2.94e-43 158
Msa0389830 MtrunA17_Chr1g0213701 52.427 103 43 2 172 274 150 246 9.41e-28 113
Msa0389830 MtrunA17_Chr4g0012861 35.294 119 69 4 186 302 314 426 5.74e-15 78.2
Msa0389830 MtrunA17_Chr2g0281191 37.273 110 61 4 186 293 352 455 5.18e-14 75.1
Msa0389830 MtrunA17_Chr5g0432721 39.560 91 50 3 186 274 321 408 7.54e-14 74.7
Msa0389830 MtrunA17_Chr3g0107701 39.560 91 50 3 186 274 338 425 2.84e-13 72.8
Msa0389830 MtrunA17_Chr7g0244871 39.326 89 49 3 186 272 12 97 9.60e-13 64.7
Msa0389830 MtrunA17_Chr4g0046371 40.206 97 56 2 185 279 146 242 3.54e-12 68.9
Msa0389830 MtrunA17_Chr2g0282961 35.897 117 73 2 165 279 136 252 5.00e-12 68.6
Msa0389830 MtrunA17_Chr2g0326761 37.624 101 61 2 182 280 103 203 1.63e-11 67.0
Msa0389830 MtrunA17_Chr3g0115271 30.882 136 81 3 156 290 94 217 4.24e-11 65.5
Msa0389830 MtrunA17_Chr4g0028971 39.000 100 59 2 182 279 104 203 8.79e-11 64.7
Msa0389830 MtrunA17_Chr1g0199681 35.052 97 62 1 180 275 186 282 8.91e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0389830 AT2G46870.1 47.492 299 92 9 173 470 21 255 3.83e-73 235
Msa0389830 AT1G01030.1 48.136 295 91 11 182 465 51 294 1.33e-67 222
Msa0389830 AT3G61970.1 43.322 307 92 11 167 470 3 230 3.96e-65 214
Msa0389830 AT1G01030.2 84.685 111 16 1 182 291 51 161 1.30e-61 206
Msa0389830 AT4G01500.1 36.467 351 147 9 179 509 28 322 2.99e-52 181
Msa0389830 AT1G68840.2 44.700 217 94 5 94 292 85 293 1.30e-48 172
Msa0389830 AT1G68840.1 44.700 217 94 5 94 292 85 293 1.30e-48 172
Msa0389830 AT3G11580.4 65.289 121 29 2 182 291 24 142 5.44e-48 166
Msa0389830 AT3G11580.2 65.289 121 29 2 182 291 24 142 5.44e-48 166
Msa0389830 AT3G11580.5 65.289 121 29 2 182 291 24 142 5.44e-48 166
Msa0389830 AT3G11580.1 65.289 121 29 2 182 291 24 142 9.84e-48 167
Msa0389830 AT1G13260.1 42.544 228 85 7 94 292 82 292 2.52e-47 168
Msa0389830 AT5G06250.5 58.824 136 44 2 183 308 42 175 9.75e-47 164
Msa0389830 AT3G11580.3 63.710 124 32 2 179 291 21 142 1.23e-46 167
Msa0389830 AT5G06250.4 66.387 119 28 2 183 291 42 158 1.50e-46 164
Msa0389830 AT5G06250.2 66.387 119 28 2 183 291 42 158 1.52e-46 164
Msa0389830 AT5G06250.1 58.824 136 44 2 183 308 42 175 3.45e-46 163
Msa0389830 AT5G06250.3 58.824 136 44 2 183 308 42 175 3.65e-46 163
Msa0389830 AT2G36080.3 69.027 113 30 2 182 291 33 143 6.17e-45 158
Msa0389830 AT2G36080.4 67.826 115 32 2 180 291 31 143 6.27e-45 156
Msa0389830 AT2G36080.2 67.826 115 32 2 180 291 31 143 6.27e-45 156
Msa0389830 AT2G36080.1 69.027 113 30 2 182 291 33 143 7.39e-45 159
Msa0389830 AT1G25560.1 63.866 119 33 2 183 293 191 307 2.35e-44 160
Msa0389830 AT3G25730.1 42.342 222 91 7 94 292 82 289 6.90e-44 159
Msa0389830 AT1G50680.1 32.271 251 123 9 65 272 7 253 8.53e-26 108
Msa0389830 AT1G51120.1 34.634 205 102 6 97 272 70 271 1.83e-24 105
Msa0389830 AT4G32010.1 37.273 110 61 4 186 293 285 388 7.58e-15 78.2
Msa0389830 AT4G32010.2 37.273 110 61 4 186 293 281 384 8.03e-15 78.2
Msa0389830 AT2G30470.1 39.560 91 50 3 186 274 294 381 5.29e-14 75.5
Msa0389830 AT1G35240.1 40.496 121 63 5 187 305 126 239 4.20e-13 72.4
Msa0389830 AT1G35520.1 39.669 121 64 5 187 305 126 239 2.36e-12 70.1
Msa0389830 AT1G34310.1 38.843 121 65 5 187 305 126 239 4.23e-12 69.3
Msa0389830 AT2G33860.1 40.217 92 54 1 185 275 157 248 1.58e-11 67.4
Msa0389830 AT1G35540.1 38.843 121 65 5 187 305 126 239 2.07e-11 67.0
Msa0389830 AT1G34410.1 38.017 121 66 5 187 305 126 239 2.60e-11 66.6
Msa0389830 AT5G60450.2 29.801 151 97 2 132 281 106 248 6.93e-11 65.5
Msa0389830 AT5G60450.1 29.801 151 97 2 132 281 130 272 7.47e-11 65.5

Find 77 sgRNAs with CRISPR-Local

Find 222 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAGATTTAGATACTCTTAT+TGG 0.204888 3_2:-313929 Msa0389830:CDS
TTATCAAGTCAAATTCTTCT+TGG 0.232204 3_2:+314615 None:intergenic
ATGTTTCCATTTCATCAATA+TGG 0.246411 3_2:-313555 Msa0389830:CDS
TTTAAAGCAAATAGATTTCA+TGG 0.253920 3_2:-314222 Msa0389830:CDS
AACAACAATATTCTATTAGA+TGG 0.265622 3_2:-313692 Msa0389830:CDS
GCAGCATCTAAAGGAGGATT+AGG 0.296328 3_2:-314296 Msa0389830:CDS
ATAGAATATTGTTGTTGATT+AGG 0.302183 3_2:+313699 None:intergenic
AATTCATCTGATTGTGTAAA+GGG 0.302465 3_2:+313589 None:intergenic
CTACTAATGGTGCTGCAAAA+AGG 0.355470 3_2:-313296 Msa0389830:CDS
GCTGCTGAATTGTGAGATTC+TGG 0.358440 3_2:+314314 None:intergenic
GGCATAGGTTGTTTATAGAT+TGG 0.359581 3_2:-313794 Msa0389830:CDS
TTATTCACAAGAAGAATTAG+AGG 0.367007 3_2:-314561 Msa0389830:CDS
CCACCACCATATTGATGAAA+TGG 0.378629 3_2:+313549 None:intergenic
GAAGATAAAGAGAAATTAGA+AGG 0.384050 3_2:+314443 None:intergenic
TGCTGATGTTGTAACCTTTG+TGG 0.393602 3_2:+313627 None:intergenic
TGTTCTTGTTGTTGTGGAAC+AGG 0.398968 3_2:+314146 None:intergenic
CAACAAGAAGGAGGAGGAGG+AGG 0.405771 3_2:-313414 Msa0389830:CDS
ATTTGACTTGATAATTATCA+TGG 0.414547 3_2:-314606 Msa0389830:CDS
CAAAGCTATGTTATGACAAA+AGG 0.424983 3_2:-313897 Msa0389830:CDS
GCGGCGTCGGCGAATTGTTT+AGG 0.427168 3_2:-313815 Msa0389830:CDS
CTTTAAATTTGTGAAATTTG+AGG 0.440342 3_2:+314238 None:intergenic
TGTTGTAACCTTTGTGGTGT+TGG 0.444187 3_2:+313633 None:intergenic
TTCAACAAGTGATGATAACT+TGG 0.444286 3_2:-313232 Msa0389830:CDS
GCTACTACTAGTACTACTAA+TGG 0.446131 3_2:-313309 Msa0389830:CDS
TGTTGGGAAACTAAACCGTT+TGG 0.462142 3_2:-314051 Msa0389830:CDS
TGATGATGATAATGAGAAAC+AGG 0.463873 3_2:+313354 None:intergenic
TGTTGATTAGGAAGAAAGAA+AGG 0.468194 3_2:+313711 None:intergenic
AAATTCATCTGATTGTGTAA+AGG 0.468921 3_2:+313588 None:intergenic
TCATTTGATGTTGAATCAAG+TGG 0.470685 3_2:+313996 None:intergenic
ACCATCACTTCAACATTTGA+AGG 0.471635 3_2:-313190 Msa0389830:CDS
AACCTTTGTGGTGTTGGATA+AGG 0.473019 3_2:+313639 None:intergenic
GTTGTAACACCAAGTGATGT+TGG 0.474361 3_2:-314068 Msa0389830:CDS
ACAACAATATTCTATTAGAT+GGG 0.482618 3_2:-313691 Msa0389830:CDS
CATTACTAGTTAAATTTCCA+TGG 0.483330 3_2:+313331 None:intergenic
TTGCATCTTGATGTTGGTGA+TGG 0.485306 3_2:+314264 None:intergenic
CAGCATCTAAAGGAGGATTA+GGG 0.488321 3_2:-314295 Msa0389830:CDS
CAGCAACAAGAAGGAGGAGG+AGG 0.488402 3_2:-313417 Msa0389830:CDS
AAGATAGAAATGGAAAATTG+TGG 0.489600 3_2:-313950 Msa0389830:CDS
TTGTAACACCAAGTGATGTT+GGG 0.490137 3_2:-314067 Msa0389830:CDS
TCTTGTTGTTCTTGTTGTTG+TGG 0.492978 3_2:+314140 None:intergenic
TCGGCGAATTGTTTAGGCAT+AGG 0.495937 3_2:-313809 Msa0389830:CDS
TTTCTCATCAACAAAATCAA+TGG 0.499739 3_2:-314367 Msa0389830:CDS
CACAATTCAGCAGCATCTAA+AGG 0.501419 3_2:-314305 Msa0389830:CDS
CTTCCTTGAGGCATTGATGA+TGG 0.504465 3_2:+313453 None:intergenic
CCATTTCATCAATATGGTGG+TGG 0.507266 3_2:-313549 Msa0389830:CDS
AACATCAACAAGATTTGAAG+AGG 0.528740 3_2:-313136 Msa0389830:CDS
CATCAACAAAATCAATGGCT+AGG 0.531892 3_2:-314362 Msa0389830:CDS
GATAAAGAGAAATTAGAAGG+TGG 0.541995 3_2:+314446 None:intergenic
AAGGTTGTTTGGTGTGAACA+TGG 0.542303 3_2:-313271 Msa0389830:CDS
GCTATGTTATGACAAAAGGT+TGG 0.544721 3_2:-313893 Msa0389830:CDS
TTTAGTTTCCCAACATCACT+TGG 0.546847 3_2:+314059 None:intergenic
GATTCAACATCAAATGAGAA+AGG 0.548994 3_2:-313990 Msa0389830:CDS
TTATGATGATGAGTTGTTGA+AGG 0.549913 3_2:+314413 None:intergenic
AGTGATGGTACTATTGAAGA+AGG 0.553751 3_2:+313204 None:intergenic
ACCTTCAAATGTTGAAGTGA+TGG 0.554721 3_2:+313189 None:intergenic
GAAAGTGTTTCTTCATGATG+AGG 0.555132 3_2:+313165 None:intergenic
TTTCCATTTCATCAATATGG+TGG 0.556128 3_2:-313552 Msa0389830:CDS
TTTGGTGTGAACATGGAGTG+TGG 0.563933 3_2:-313264 Msa0389830:CDS
GTGAAAAGTGTTGCTGATGA+AGG 0.570944 3_2:+313735 None:intergenic
GTTTCATTTCAACGCGGCGT+CGG 0.571504 3_2:-313828 Msa0389830:CDS
AGGTTGTTGCATCTTGATGT+TGG 0.573287 3_2:+314258 None:intergenic
TGAGGCATTGATGATGGTGC+TGG 0.585946 3_2:+313459 None:intergenic
AGTACAAGACAGCAACAAGA+AGG 0.600583 3_2:-313426 Msa0389830:CDS
CAATATTCTATTAGATGGGG+AGG 0.609587 3_2:-313687 Msa0389830:CDS
AGACAGCAACAAGAAGGAGG+AGG 0.619946 3_2:-313420 Msa0389830:CDS
GATTTCATGGAATTGTCACT+AGG 0.623329 3_2:-314209 Msa0389830:CDS
TTCCTTATCCAACACCACAA+AGG 0.633231 3_2:-313641 Msa0389830:CDS
ACAAGACAGCAACAAGAAGG+AGG 0.633565 3_2:-313423 Msa0389830:CDS
CAACAATATTCTATTAGATG+GGG 0.645043 3_2:-313690 Msa0389830:CDS
GCACCATCATCAATGCCTCA+AGG 0.646120 3_2:-313456 Msa0389830:CDS
TCTCATTATCATCATCACCA+TGG 0.646213 3_2:-313348 Msa0389830:CDS
CTTGTACTCAAGCTTCCTTG+AGG 0.650771 3_2:+313441 None:intergenic
GGTGTGAACATGGAGTGTGG+TGG 0.666596 3_2:-313261 Msa0389830:CDS
TCTTGTTGTTGTGGAACAGG+AGG 0.666596 3_2:+314149 None:intergenic
AATTCAGCAGCATCTAAAGG+AGG 0.671535 3_2:-314302 Msa0389830:CDS
CTAAAGACAAAACAAAACCA+TGG 0.711539 3_2:+315004 None:intergenic
GACATTGTTTCATTTCAACG+CGG 0.724243 3_2:-313834 Msa0389830:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTGAAAGAAAAAAATATATT+GGG + chr3_2:313124-313143 None:intergenic 10.0%
!! TTTGAAAGAAAAAAATATAT+TGG + chr3_2:313125-313144 None:intergenic 10.0%
!! TTGAAAGAAAAAAATATATT+GGG + chr3_2:313124-313143 None:intergenic 10.0%
!! TTTGAAAGAAAAAAATATAT+TGG + chr3_2:313125-313144 None:intergenic 10.0%
!! TGGGTTATTAAAAAAAATAT+GGG + chr3_2:313105-313124 None:intergenic 15.0%
!! TTGGGTTATTAAAAAAAATA+TGG + chr3_2:313106-313125 None:intergenic 15.0%
!! ATTTGACAAAATTAATAAAG+TGG + chr3_2:313153-313172 None:intergenic 15.0%
!! AAAAATATTGTATATGATGA+GGG + chr3_2:313212-313231 None:intergenic 15.0%
!! AAAAAATATTGTATATGATG+AGG + chr3_2:313213-313232 None:intergenic 15.0%
!! TGGGTTATTAAAAAAAATAT+GGG + chr3_2:313105-313124 None:intergenic 15.0%
!! TTGGGTTATTAAAAAAAATA+TGG + chr3_2:313106-313125 None:intergenic 15.0%
!! ATTTGACAAAATTAATAAAG+TGG + chr3_2:313153-313172 None:intergenic 15.0%
!! AAAAATATTGTATATGATGA+GGG + chr3_2:313212-313231 None:intergenic 15.0%
!! AAAAAATATTGTATATGATG+AGG + chr3_2:313213-313232 None:intergenic 15.0%
!! AAAAGAATTACCAAGAAAAA+TGG + chr3_2:313049-313068 None:intergenic 20.0%
!! GGGTTATTAAAAAAAATATG+GGG + chr3_2:313104-313123 None:intergenic 20.0%
!! AAAATATTGTATATGATGAG+GGG + chr3_2:313211-313230 None:intergenic 20.0%
!!! ATTTGACTTGATAATTATCA+TGG - chr3_2:313305-313324 Msa0389830:CDS 20.0%
!! CTTTAAATTTGTGAAATTTG+AGG + chr3_2:313676-313695 None:intergenic 20.0%
!!! TTTAAAGCAAATAGATTTCA+TGG - chr3_2:313689-313708 Msa0389830:CDS 20.0%
!!! GTTTTTTCTCTTTAACAAAA+CGG + chr3_2:314046-314065 None:intergenic 20.0%
!!! ATAGAATATTGTTGTTGATT+AGG + chr3_2:314215-314234 None:intergenic 20.0%
!! AACAACAATATTCTATTAGA+TGG - chr3_2:314219-314238 Msa0389830:CDS 20.0%
!! ACAACAATATTCTATTAGAT+GGG - chr3_2:314220-314239 Msa0389830:CDS 20.0%
!! AAAAGAATTACCAAGAAAAA+TGG + chr3_2:313049-313068 None:intergenic 20.0%
!! GGGTTATTAAAAAAAATATG+GGG + chr3_2:313104-313123 None:intergenic 20.0%
!! AAAATATTGTATATGATGAG+GGG + chr3_2:313211-313230 None:intergenic 20.0%
!!! ATTTGACTTGATAATTATCA+TGG - chr3_2:313305-313324 Msa0389830:CDS 20.0%
!! CTTTAAATTTGTGAAATTTG+AGG + chr3_2:313676-313695 None:intergenic 20.0%
!!! TTTAAAGCAAATAGATTTCA+TGG - chr3_2:313689-313708 Msa0389830:CDS 20.0%
!!! GTTTTTTCTCTTTAACAAAA+CGG + chr3_2:314046-314065 None:intergenic 20.0%
!!! ATAGAATATTGTTGTTGATT+AGG + chr3_2:314215-314234 None:intergenic 20.0%
!! AACAACAATATTCTATTAGA+TGG - chr3_2:314219-314238 Msa0389830:CDS 20.0%
!! ACAACAATATTCTATTAGAT+GGG - chr3_2:314220-314239 Msa0389830:CDS 20.0%
!!! ATGGTTTTGTTTTGTCTTTA+GGG - chr3_2:312909-312928 Msa0389830:three_prime_UTR 25.0%
! AAAGGAAAACAAAGAAAAAG+AGG + chr3_2:312983-313002 None:intergenic 25.0%
!! TATTTTATGGGAGAATTATG+AGG + chr3_2:313010-313029 None:intergenic 25.0%
!! TGATGAGGAAGATATTTTAT+GGG + chr3_2:313022-313041 None:intergenic 25.0%
!! ATGATGAGGAAGATATTTTA+TGG + chr3_2:313023-313042 None:intergenic 25.0%
! AAGAAAAATGGTATATGATG+AGG + chr3_2:313037-313056 None:intergenic 25.0%
!!! TCATCATATACCATTTTTCT+TGG - chr3_2:313036-313055 Msa0389830:three_prime_UTR 25.0%
! TTATCAAGTCAAATTCTTCT+TGG + chr3_2:313299-313318 None:intergenic 25.0%
! TTATTCACAAGAAGAATTAG+AGG - chr3_2:313350-313369 Msa0389830:CDS 25.0%
! GAAGATAAAGAGAAATTAGA+AGG + chr3_2:313471-313490 None:intergenic 25.0%
! TTTCTCATCAACAAAATCAA+TGG - chr3_2:313544-313563 Msa0389830:CDS 25.0%
!!! CTGAATTTTGAAGATAGAAA+TGG - chr3_2:313951-313970 Msa0389830:CDS 25.0%
! AAGATAGAAATGGAAAATTG+TGG - chr3_2:313961-313980 Msa0389830:CDS 25.0%
! CAACAATATTCTATTAGATG+GGG - chr3_2:314221-314240 Msa0389830:CDS 25.0%
! AATTCATCTGATTGTGTAAA+GGG + chr3_2:314325-314344 None:intergenic 25.0%
! AAATTCATCTGATTGTGTAA+AGG + chr3_2:314326-314345 None:intergenic 25.0%
! ATGTTTCCATTTCATCAATA+TGG - chr3_2:314356-314375 Msa0389830:CDS 25.0%
! CTCATATAAAAAACTGAACT+TGG + chr3_2:314425-314444 None:intergenic 25.0%
! CATTACTAGTTAAATTTCCA+TGG + chr3_2:314583-314602 None:intergenic 25.0%
!! TTCATTTTCATCATTGTTGT+TGG + chr3_2:314865-314884 None:intergenic 25.0%
!!! ATGGTTTTGTTTTGTCTTTA+GGG - chr3_2:312909-312928 Msa0389830:three_prime_UTR 25.0%
! AAAGGAAAACAAAGAAAAAG+AGG + chr3_2:312983-313002 None:intergenic 25.0%
!! TATTTTATGGGAGAATTATG+AGG + chr3_2:313010-313029 None:intergenic 25.0%
!! TGATGAGGAAGATATTTTAT+GGG + chr3_2:313022-313041 None:intergenic 25.0%
!! ATGATGAGGAAGATATTTTA+TGG + chr3_2:313023-313042 None:intergenic 25.0%
! AAGAAAAATGGTATATGATG+AGG + chr3_2:313037-313056 None:intergenic 25.0%
!!! TCATCATATACCATTTTTCT+TGG - chr3_2:313036-313055 Msa0389830:three_prime_UTR 25.0%
! TTATCAAGTCAAATTCTTCT+TGG + chr3_2:313299-313318 None:intergenic 25.0%
! TTATTCACAAGAAGAATTAG+AGG - chr3_2:313350-313369 Msa0389830:CDS 25.0%
! GAAGATAAAGAGAAATTAGA+AGG + chr3_2:313471-313490 None:intergenic 25.0%
! TTTCTCATCAACAAAATCAA+TGG - chr3_2:313544-313563 Msa0389830:CDS 25.0%
!!! CTGAATTTTGAAGATAGAAA+TGG - chr3_2:313951-313970 Msa0389830:CDS 25.0%
! AAGATAGAAATGGAAAATTG+TGG - chr3_2:313961-313980 Msa0389830:CDS 25.0%
! CAACAATATTCTATTAGATG+GGG - chr3_2:314221-314240 Msa0389830:CDS 25.0%
! AATTCATCTGATTGTGTAAA+GGG + chr3_2:314325-314344 None:intergenic 25.0%
! AAATTCATCTGATTGTGTAA+AGG + chr3_2:314326-314345 None:intergenic 25.0%
! ATGTTTCCATTTCATCAATA+TGG - chr3_2:314356-314375 Msa0389830:CDS 25.0%
! CTCATATAAAAAACTGAACT+TGG + chr3_2:314425-314444 None:intergenic 25.0%
! CATTACTAGTTAAATTTCCA+TGG + chr3_2:314583-314602 None:intergenic 25.0%
!! TTCATTTTCATCATTGTTGT+TGG + chr3_2:314865-314884 None:intergenic 25.0%
CTTCTCTTAGTCAAATATGA+AGG - chr3_2:312939-312958 Msa0389830:three_prime_UTR 30.0%
GATAAAGAGAAATTAGAAGG+TGG + chr3_2:313468-313487 None:intergenic 30.0%
! TTATGATGATGAGTTGTTGA+AGG + chr3_2:313501-313520 None:intergenic 30.0%
!! TGTTCTTTTTCATGTGTACT+AGG + chr3_2:313810-313829 None:intergenic 30.0%
!!! GTTGTTTTGGTATAACCAAA+CGG + chr3_2:313878-313897 None:intergenic 30.0%
!! TACTTTTCAGCATGTTGTTT+TGG + chr3_2:313891-313910 None:intergenic 30.0%
TCATTTGATGTTGAATCAAG+TGG + chr3_2:313918-313937 None:intergenic 30.0%
GATTCAACATCAAATGAGAA+AGG - chr3_2:313921-313940 Msa0389830:CDS 30.0%
GGAGATTTAGATACTCTTAT+TGG - chr3_2:313982-314001 Msa0389830:CDS 30.0%
! CTTTTGTCATAACATAGCTT+TGG + chr3_2:314016-314035 None:intergenic 30.0%
CAAAGCTATGTTATGACAAA+AGG - chr3_2:314014-314033 Msa0389830:CDS 30.0%
AAAGAGAAAAAACTTGATGC+TGG - chr3_2:314053-314072 Msa0389830:CDS 30.0%
! TGTTGATTAGGAAGAAAGAA+AGG + chr3_2:314203-314222 None:intergenic 30.0%
TTTCCATTTCATCAATATGG+TGG - chr3_2:314359-314378 Msa0389830:CDS 30.0%
! TGATGATGATAATGAGAAAC+AGG + chr3_2:314560-314579 None:intergenic 30.0%
TTCAACAAGTGATGATAACT+TGG - chr3_2:314679-314698 Msa0389830:intron 30.0%
AACATCAACAAGATTTGAAG+AGG - chr3_2:314775-314794 Msa0389830:intron 30.0%
! GAAGAAGCTTCAATGATTTT+TGG - chr3_2:314809-314828 Msa0389830:intron 30.0%
CTTCTCTTAGTCAAATATGA+AGG - chr3_2:312939-312958 Msa0389830:three_prime_UTR 30.0%
GATAAAGAGAAATTAGAAGG+TGG + chr3_2:313468-313487 None:intergenic 30.0%
! TTATGATGATGAGTTGTTGA+AGG + chr3_2:313501-313520 None:intergenic 30.0%
!! TGTTCTTTTTCATGTGTACT+AGG + chr3_2:313810-313829 None:intergenic 30.0%
!!! GTTGTTTTGGTATAACCAAA+CGG + chr3_2:313878-313897 None:intergenic 30.0%
!! TACTTTTCAGCATGTTGTTT+TGG + chr3_2:313891-313910 None:intergenic 30.0%
TCATTTGATGTTGAATCAAG+TGG + chr3_2:313918-313937 None:intergenic 30.0%
GATTCAACATCAAATGAGAA+AGG - chr3_2:313921-313940 Msa0389830:CDS 30.0%
GGAGATTTAGATACTCTTAT+TGG - chr3_2:313982-314001 Msa0389830:CDS 30.0%
! CTTTTGTCATAACATAGCTT+TGG + chr3_2:314016-314035 None:intergenic 30.0%
CAAAGCTATGTTATGACAAA+AGG - chr3_2:314014-314033 Msa0389830:CDS 30.0%
AAAGAGAAAAAACTTGATGC+TGG - chr3_2:314053-314072 Msa0389830:CDS 30.0%
! TGTTGATTAGGAAGAAAGAA+AGG + chr3_2:314203-314222 None:intergenic 30.0%
TTTCCATTTCATCAATATGG+TGG - chr3_2:314359-314378 Msa0389830:CDS 30.0%
! TGATGATGATAATGAGAAAC+AGG + chr3_2:314560-314579 None:intergenic 30.0%
TTCAACAAGTGATGATAACT+TGG - chr3_2:314679-314698 Msa0389830:intron 30.0%
AACATCAACAAGATTTGAAG+AGG - chr3_2:314775-314794 Msa0389830:intron 30.0%
! GAAGAAGCTTCAATGATTTT+TGG - chr3_2:314809-314828 Msa0389830:intron 30.0%
AAAGAGGTTCATGTAAGAGT+CGG + chr3_2:312967-312986 None:intergenic 35.0%
ATATTGTATATGATGAGGGG+AGG + chr3_2:313208-313227 None:intergenic 35.0%
CATCAACAAAATCAATGGCT+AGG - chr3_2:313549-313568 Msa0389830:CDS 35.0%
GATTTCATGGAATTGTCACT+AGG - chr3_2:313702-313721 Msa0389830:CDS 35.0%
!! TCTTGTTGTTCTTGTTGTTG+TGG + chr3_2:313774-313793 None:intergenic 35.0%
TTGTAACACCAAGTGATGTT+GGG - chr3_2:313844-313863 Msa0389830:CDS 35.0%
! TTTAGTTTCCCAACATCACT+TGG + chr3_2:313855-313874 None:intergenic 35.0%
GCTATGTTATGACAAAAGGT+TGG - chr3_2:314018-314037 Msa0389830:CDS 35.0%
GACATTGTTTCATTTCAACG+CGG - chr3_2:314077-314096 Msa0389830:CDS 35.0%
GGCATAGGTTGTTTATAGAT+TGG - chr3_2:314117-314136 Msa0389830:CDS 35.0%
CAATATTCTATTAGATGGGG+AGG - chr3_2:314224-314243 Msa0389830:CDS 35.0%
TCTCATTATCATCATCACCA+TGG - chr3_2:314563-314582 Msa0389830:CDS 35.0%
GCTACTACTAGTACTACTAA+TGG - chr3_2:314602-314621 Msa0389830:CDS 35.0%
GCAAAAAGGTTAAGGTTGTT+TGG - chr3_2:314629-314648 Msa0389830:CDS 35.0%
AGTGATGGTACTATTGAAGA+AGG + chr3_2:314710-314729 None:intergenic 35.0%
ACCATCACTTCAACATTTGA+AGG - chr3_2:314721-314740 Msa0389830:intron 35.0%
ACCTTCAAATGTTGAAGTGA+TGG + chr3_2:314725-314744 None:intergenic 35.0%
!! GAAAGTGTTTCTTCATGATG+AGG + chr3_2:314749-314768 None:intergenic 35.0%
AAAGAGGTTCATGTAAGAGT+CGG + chr3_2:312967-312986 None:intergenic 35.0%
ATATTGTATATGATGAGGGG+AGG + chr3_2:313208-313227 None:intergenic 35.0%
CATCAACAAAATCAATGGCT+AGG - chr3_2:313549-313568 Msa0389830:CDS 35.0%
GATTTCATGGAATTGTCACT+AGG - chr3_2:313702-313721 Msa0389830:CDS 35.0%
!! TCTTGTTGTTCTTGTTGTTG+TGG + chr3_2:313774-313793 None:intergenic 35.0%
TTGTAACACCAAGTGATGTT+GGG - chr3_2:313844-313863 Msa0389830:CDS 35.0%
! TTTAGTTTCCCAACATCACT+TGG + chr3_2:313855-313874 None:intergenic 35.0%
GCTATGTTATGACAAAAGGT+TGG - chr3_2:314018-314037 Msa0389830:CDS 35.0%
GACATTGTTTCATTTCAACG+CGG - chr3_2:314077-314096 Msa0389830:CDS 35.0%
GGCATAGGTTGTTTATAGAT+TGG - chr3_2:314117-314136 Msa0389830:CDS 35.0%
CAATATTCTATTAGATGGGG+AGG - chr3_2:314224-314243 Msa0389830:CDS 35.0%
TCTCATTATCATCATCACCA+TGG - chr3_2:314563-314582 Msa0389830:CDS 35.0%
GCTACTACTAGTACTACTAA+TGG - chr3_2:314602-314621 Msa0389830:CDS 35.0%
GCAAAAAGGTTAAGGTTGTT+TGG - chr3_2:314629-314648 Msa0389830:CDS 35.0%
AGTGATGGTACTATTGAAGA+AGG + chr3_2:314710-314729 None:intergenic 35.0%
ACCATCACTTCAACATTTGA+AGG - chr3_2:314721-314740 Msa0389830:intron 35.0%
ACCTTCAAATGTTGAAGTGA+TGG + chr3_2:314725-314744 None:intergenic 35.0%
!! GAAAGTGTTTCTTCATGATG+AGG + chr3_2:314749-314768 None:intergenic 35.0%
GGAGAATTATGAGGCTGTAA+AGG + chr3_2:313001-313020 None:intergenic 40.0%
CACAATTCAGCAGCATCTAA+AGG - chr3_2:313606-313625 Msa0389830:CDS 40.0%
AATTCAGCAGCATCTAAAGG+AGG - chr3_2:313609-313628 Msa0389830:CDS 40.0%
CAGCATCTAAAGGAGGATTA+GGG - chr3_2:313616-313635 Msa0389830:CDS 40.0%
! TTGCATCTTGATGTTGGTGA+TGG + chr3_2:313650-313669 None:intergenic 40.0%
AGGTTGTTGCATCTTGATGT+TGG + chr3_2:313656-313675 None:intergenic 40.0%
!! TGTTCTTGTTGTTGTGGAAC+AGG + chr3_2:313768-313787 None:intergenic 40.0%
GTTGTAACACCAAGTGATGT+TGG - chr3_2:313843-313862 Msa0389830:CDS 40.0%
TGTTGGGAAACTAAACCGTT+TGG - chr3_2:313860-313879 Msa0389830:CDS 40.0%
!! GTGAAAAGTGTTGCTGATGA+AGG + chr3_2:314179-314198 None:intergenic 40.0%
TTCCTTATCCAACACCACAA+AGG - chr3_2:314270-314289 Msa0389830:CDS 40.0%
! AACCTTTGTGGTGTTGGATA+AGG + chr3_2:314275-314294 None:intergenic 40.0%
TGTTGTAACCTTTGTGGTGT+TGG + chr3_2:314281-314300 None:intergenic 40.0%
TGCTGATGTTGTAACCTTTG+TGG + chr3_2:314287-314306 None:intergenic 40.0%
CCACCACCATATTGATGAAA+TGG + chr3_2:314365-314384 None:intergenic 40.0%
CCATTTCATCAATATGGTGG+TGG - chr3_2:314362-314381 Msa0389830:CDS 40.0%
AGTACAAGACAGCAACAAGA+AGG - chr3_2:314485-314504 Msa0389830:CDS 40.0%
!! CTACTAATGGTGCTGCAAAA+AGG - chr3_2:314615-314634 Msa0389830:CDS 40.0%
!! ATGGTGCTGCAAAAAGGTTA+AGG - chr3_2:314621-314640 Msa0389830:CDS 40.0%
!! AAGGTTGTTTGGTGTGAACA+TGG - chr3_2:314640-314659 Msa0389830:intron 40.0%
GGAGAATTATGAGGCTGTAA+AGG + chr3_2:313001-313020 None:intergenic 40.0%
CACAATTCAGCAGCATCTAA+AGG - chr3_2:313606-313625 Msa0389830:CDS 40.0%
AATTCAGCAGCATCTAAAGG+AGG - chr3_2:313609-313628 Msa0389830:CDS 40.0%
CAGCATCTAAAGGAGGATTA+GGG - chr3_2:313616-313635 Msa0389830:CDS 40.0%
! TTGCATCTTGATGTTGGTGA+TGG + chr3_2:313650-313669 None:intergenic 40.0%
AGGTTGTTGCATCTTGATGT+TGG + chr3_2:313656-313675 None:intergenic 40.0%
!! TGTTCTTGTTGTTGTGGAAC+AGG + chr3_2:313768-313787 None:intergenic 40.0%
GTTGTAACACCAAGTGATGT+TGG - chr3_2:313843-313862 Msa0389830:CDS 40.0%
TGTTGGGAAACTAAACCGTT+TGG - chr3_2:313860-313879 Msa0389830:CDS 40.0%
!! GTGAAAAGTGTTGCTGATGA+AGG + chr3_2:314179-314198 None:intergenic 40.0%
TTCCTTATCCAACACCACAA+AGG - chr3_2:314270-314289 Msa0389830:CDS 40.0%
! AACCTTTGTGGTGTTGGATA+AGG + chr3_2:314275-314294 None:intergenic 40.0%
TGTTGTAACCTTTGTGGTGT+TGG + chr3_2:314281-314300 None:intergenic 40.0%
TGCTGATGTTGTAACCTTTG+TGG + chr3_2:314287-314306 None:intergenic 40.0%
CCACCACCATATTGATGAAA+TGG + chr3_2:314365-314384 None:intergenic 40.0%
CCATTTCATCAATATGGTGG+TGG - chr3_2:314362-314381 Msa0389830:CDS 40.0%
AGTACAAGACAGCAACAAGA+AGG - chr3_2:314485-314504 Msa0389830:CDS 40.0%
!! CTACTAATGGTGCTGCAAAA+AGG - chr3_2:314615-314634 Msa0389830:CDS 40.0%
!! ATGGTGCTGCAAAAAGGTTA+AGG - chr3_2:314621-314640 Msa0389830:CDS 40.0%
!! AAGGTTGTTTGGTGTGAACA+TGG - chr3_2:314640-314659 Msa0389830:intron 40.0%
GCTGCTGAATTGTGAGATTC+TGG + chr3_2:313600-313619 None:intergenic 45.0%
GCAGCATCTAAAGGAGGATT+AGG - chr3_2:313615-313634 Msa0389830:CDS 45.0%
!! TCTTGTTGTTGTGGAACAGG+AGG + chr3_2:313765-313784 None:intergenic 45.0%
TCGGCGAATTGTTTAGGCAT+AGG - chr3_2:314102-314121 Msa0389830:CDS 45.0%
!! CTTCCTTGAGGCATTGATGA+TGG + chr3_2:314461-314480 None:intergenic 45.0%
CTTGTACTCAAGCTTCCTTG+AGG + chr3_2:314473-314492 None:intergenic 45.0%
ACAAGACAGCAACAAGAAGG+AGG - chr3_2:314488-314507 Msa0389830:CDS 45.0%
! TTTGGTGTGAACATGGAGTG+TGG - chr3_2:314647-314666 Msa0389830:intron 45.0%
GCTGCTGAATTGTGAGATTC+TGG + chr3_2:313600-313619 None:intergenic 45.0%
GCAGCATCTAAAGGAGGATT+AGG - chr3_2:313615-313634 Msa0389830:CDS 45.0%
!! TCTTGTTGTTGTGGAACAGG+AGG + chr3_2:313765-313784 None:intergenic 45.0%
TCGGCGAATTGTTTAGGCAT+AGG - chr3_2:314102-314121 Msa0389830:CDS 45.0%
!! CTTCCTTGAGGCATTGATGA+TGG + chr3_2:314461-314480 None:intergenic 45.0%
CTTGTACTCAAGCTTCCTTG+AGG + chr3_2:314473-314492 None:intergenic 45.0%
ACAAGACAGCAACAAGAAGG+AGG - chr3_2:314488-314507 Msa0389830:CDS 45.0%
! TTTGGTGTGAACATGGAGTG+TGG - chr3_2:314647-314666 Msa0389830:intron 45.0%
!! AAAATATATAAACAAAAAAA+AGG + chr3_2:313183-313202 None:intergenic 5.0%
!! AAAATATATAAACAAAAAAA+AGG + chr3_2:313183-313202 None:intergenic 5.0%
GTTTCATTTCAACGCGGCGT+CGG - chr3_2:314083-314102 Msa0389830:CDS 50.0%
!! TGAGGCATTGATGATGGTGC+TGG + chr3_2:314455-314474 None:intergenic 50.0%
GCACCATCATCAATGCCTCA+AGG - chr3_2:314455-314474 Msa0389830:CDS 50.0%
AGACAGCAACAAGAAGGAGG+AGG - chr3_2:314491-314510 Msa0389830:CDS 50.0%
GTTTCATTTCAACGCGGCGT+CGG - chr3_2:314083-314102 Msa0389830:CDS 50.0%
!! TGAGGCATTGATGATGGTGC+TGG + chr3_2:314455-314474 None:intergenic 50.0%
GCACCATCATCAATGCCTCA+AGG - chr3_2:314455-314474 Msa0389830:CDS 50.0%
AGACAGCAACAAGAAGGAGG+AGG - chr3_2:314491-314510 Msa0389830:CDS 50.0%
CAGCAACAAGAAGGAGGAGG+AGG - chr3_2:314494-314513 Msa0389830:CDS 55.0%
CAACAAGAAGGAGGAGGAGG+AGG - chr3_2:314497-314516 Msa0389830:CDS 55.0%
GGTGTGAACATGGAGTGTGG+TGG - chr3_2:314650-314669 Msa0389830:intron 55.0%
CAGCAACAAGAAGGAGGAGG+AGG - chr3_2:314494-314513 Msa0389830:CDS 55.0%
CAACAAGAAGGAGGAGGAGG+AGG - chr3_2:314497-314516 Msa0389830:CDS 55.0%
GGTGTGAACATGGAGTGTGG+TGG - chr3_2:314650-314669 Msa0389830:intron 55.0%
!! GCGGCGTCGGCGAATTGTTT+AGG - chr3_2:314096-314115 Msa0389830:CDS 60.0%
CAAGAAGGAGGAGGAGGAGG+AGG - chr3_2:314500-314519 Msa0389830:CDS 60.0%
!! GCGGCGTCGGCGAATTGTTT+AGG - chr3_2:314096-314115 Msa0389830:CDS 60.0%
CAAGAAGGAGGAGGAGGAGG+AGG - chr3_2:314500-314519 Msa0389830:CDS 60.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 312909 315024 312909 ID=Msa0389830;Name=Msa0389830
chr3_2 mRNA 312909 315024 312909 ID=Msa0389830-mRNA-1;Parent=Msa0389830;Name=Msa0389830-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0|0|0.5|1|0|0|2|150|532
chr3_2 exon 312909 314649 312909 ID=Msa0389830-mRNA-1:exon:45;Parent=Msa0389830-mRNA-1
chr3_2 exon 315017 315024 315017 ID=Msa0389830-mRNA-1:exon:44;Parent=Msa0389830-mRNA-1
chr3_2 CDS 315017 315024 315017 ID=Msa0389830-mRNA-1:cds;Parent=Msa0389830-mRNA-1
chr3_2 CDS 313059 314649 313059 ID=Msa0389830-mRNA-1:cds;Parent=Msa0389830-mRNA-1
chr3_2 three_prime_UTR 312909 313058 312909 ID=Msa0389830-mRNA-1:three_prime_utr;Parent=Msa0389830-mRNA-1
Gene Sequence

>Msa0389830

ATGGTTTTATTTTGTGAGATCCAAGAAGAATTTGACTTGATAATTATCATGGAGTTGATGCAAGAAGTGAAAGATTATTCACAAGAAGAATTAGAGGAAGATGAAGAAGAAATCATGACAAAAACAACAAGAGATGAAGAAGAAGAAAGTAGTAGTAAGCAACAATTACAACACTGTACTTTTTCTTCTCCACCTTCTAATTTCTCTTTATCTTCTTCATCTCCTTCAACAACTCATCATCATAATCATAATCATGATGTTACAAATGTTTCTCATCAACAAAATCAATGGCTAGGAATGAATCATCATCATCATCATTCACCAGAATCTCACAATTCAGCAGCATCTAAAGGAGGATTAGGGTTATTACACCATCACCAACATCAAGATGCAACAACCTCAAATTTCACAAATTTAAAGCAAATAGATTTCATGGAATTGTCACTAGGTAACAACAATAACAAAAACAAAGATGTTATTAATGTTCCTCCTGTTCCACAACAACAAGAACAACAAGAACAAGAACAGCAACCTAGTACACATGAAAAAGAACACATGTTTGACAAAGTTGTAACACCAAGTGATGTTGGGAAACTAAACCGTTTGGTTATACCAAAACAACATGCTGAAAAGTATTTTCCACTTGATTCAACATCAAATGAGAAAGGTCTTCTTCTGAATTTTGAAGATAGAAATGGAAAATTGTGGAGATTTAGATACTCTTATTGGAACAGTAGCCAAAGCTATGTTATGACAAAAGGTTGGAGCCGTTTTGTTAAAGAGAAAAAACTTGATGCTGGTGACATTGTTTCATTTCAACGCGGCGTCGGCGAATTGTTTAGGCATAGGTTGTTTATAGATTGGAAGAGAAGATCTAATCATAATCATCATAATATTGATCCTTCATCAGCAACACTTTTCACTCCTTTCTTTCTTCCTAATCAACAACAATATTCTATTAGATGGGGAGGTGCTAATAGTAGATTTTACTCTCTTCCTTATCCAACACCACAAAGGTTACAACATCAGCAACAAAATCATCATGACCCTTTACACAATCAGATGAATTTTAATCATAACATGTTTCCATTTCATCAATATGGTGGTGGAAATGTGAATCATCAATACAATTTTCATCATCATGATCCAAGTTCAGTTTTTTATATGAGATCATTACCAGCACCATCATCAATGCCTCAAGGAAGCTTGAGTACAAGACAGCAACAAGAAGGAGGAGGAGGAGGAGGAAGCAATGTCTCAAACATGATTATTGATTCTGTTCCTGTTTCTCATTATCATCATCACCATGGAAATTTAACTAGTAATGCTACTACTAGTACTACTAATGGTGCTGCAAAAAGGTTAAGGTTGTTTGGTGTGAACATGGAGTGTGGTGGTTCTTCTTCAACAAGTGATGATAACTTGGCTTCTCCTTCTTCAATAGTACCATCACTTCAACATTTGAAGGTACCTCATCATGAAGAAACACTTTCAAGTTCAACATCAACAAGATTTGAAGAGGATAAGAGAAGAGAAGAAGCTTCAATGATTTTTGGTTTAGATACTTCTTTGCAATATCATAATTACCAACAACAATGA

Protein sequence

>Msa0389830

MVLFCEIQEEFDLIIIMELMQEVKDYSQEELEEDEEEIMTKTTRDEEEESSSKQQLQHCTFSSPPSNFSLSSSSPSTTHHHNHNHDVTNVSHQQNQWLGMNHHHHHSPESHNSAASKGGLGLLHHHQHQDATTSNFTNLKQIDFMELSLGNNNNKNKDVINVPPVPQQQEQQEQEQQPSTHEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSTSNEKGLLLNFEDRNGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGVGELFRHRLFIDWKRRSNHNHHNIDPSSATLFTPFFLPNQQQYSIRWGGANSRFYSLPYPTPQRLQHQQQNHHDPLHNQMNFNHNMFPFHQYGGGNVNHQYNFHHHDPSSVFYMRSLPAPSSMPQGSLSTRQQQEGGGGGGSNVSNMIIDSVPVSHYHHHHGNLTSNATTSTTNGAAKRLRLFGVNMECGGSSSTSDDNLASPSSIVPSLQHLKVPHHEETLSSSTSTRFEEDKRREEASMIFGLDTSLQYHNYQQQ*