AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0057740


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0057740 MtrunA17_Chr1g0146481 96.739 552 15 2 1 552 1 549 0.0 1105
Msa0057740 MtrunA17_Chr3g0145921 34.247 292 185 2 265 550 280 570 7.15e-57 200
Msa0057740 MtrunA17_Chr1g0180881 30.247 324 212 3 235 552 244 559 3.67e-45 167
Msa0057740 MtrunA17_Chr7g0264491 30.719 306 205 2 253 552 251 555 7.20e-43 161
Msa0057740 MtrunA17_Chr3g0090001 34.177 237 149 2 320 550 167 402 1.40e-34 135
Msa0057740 MtrunA17_Chr4g0021031 28.322 286 190 5 266 539 208 490 2.65e-23 103
Msa0057740 MtrunA17_Chr3g0126401 26.336 262 179 6 299 550 256 513 2.94e-17 84.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0057740 AT3G53920.1 44.123 519 238 10 53 551 84 570 4.03e-131 394
Msa0057740 AT3G53920.2 42.458 358 162 7 53 397 84 410 3.92e-74 242
Msa0057740 AT1G08540.1 34.983 303 190 3 254 550 267 568 3.16e-60 209
Msa0057740 AT2G36990.1 30.328 366 231 5 204 552 187 545 5.14e-47 172
Msa0057740 AT5G13730.1 35.154 293 176 4 265 549 128 414 2.84e-43 159
Msa0057740 AT1G64860.1 28.854 253 159 5 309 546 249 495 2.17e-23 103
Msa0057740 AT1G64860.2 29.048 210 130 4 309 503 249 454 2.44e-20 94.7
Msa0057740 AT5G24120.1 25.794 252 173 6 309 550 269 516 2.78e-16 82.4
Msa0057740 AT5G24120.3 25.794 252 173 6 309 550 269 516 2.78e-16 82.4
Msa0057740 AT5G24120.2 25.794 252 173 6 309 550 269 516 2.78e-16 82.4

Find 116 sgRNAs with CRISPR-Local

Find 331 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAAGACCTTCCGTGCTTTC+TGG 0.088168 1_2:-13965637 None:intergenic
CTCAAAGTTGAATTATTATT+TGG 0.140183 1_2:+13967007 Msa0057740:CDS
ATCACATTTCGGTTTGTTAA+TGG 0.244701 1_2:+13963282 Msa0057740:CDS
TCTTCTTCATCTTCATCTTC+TGG 0.255402 1_2:+13961913 Msa0057740:CDS
TGGAACATAGAATAAAATTA+TGG 0.257183 1_2:+13961792 Msa0057740:exon
ATGAAAGGCTGTGCAAAGTT+TGG 0.280285 1_2:-13961770 None:intergenic
CTTTGCAATTTCAAGATCAT+TGG 0.280476 1_2:-13965681 None:intergenic
AAACTTTGCACAGCCTTTCA+TGG 0.291939 1_2:+13961772 Msa0057740:five_prime_UTR
TGAAAGGCTGTGCAAAGTTT+GGG 0.321392 1_2:-13961769 None:intergenic
AAGATCATTGGGATATTTCA+TGG 0.329371 1_2:-13965669 None:intergenic
CTGTATAGTCATCTACTTTG+TGG 0.330993 1_2:-13963498 None:intergenic
CCCAAGTCTCTTGAATATAT+AGG 0.337893 1_2:+13966903 Msa0057740:CDS
CCAAGTCTCTTGAATATATA+GGG 0.343015 1_2:+13966904 Msa0057740:CDS
TTTCCTTTCTCTTGCTAGAA+TGG 0.344400 1_2:-13963534 None:intergenic
ATCTGTATATGGGGATTATG+AGG 0.355598 1_2:+13967083 Msa0057740:three_prime_UTR
AAAATTATGGGTCTCTGCTT+TGG 0.357478 1_2:+13961805 Msa0057740:exon
TGTTTCATGACAGTCTCTTC+AGG 0.370634 1_2:-13966783 None:intergenic
AGTAGCTGGGCAGAAGCATC+TGG 0.382458 1_2:+13963889 Msa0057740:CDS
TTGGATCTGTAGTTTATCAT+TGG 0.388384 1_2:+13967026 Msa0057740:exon
TATACTTTGCTAGAAAATAC+AGG 0.389187 1_2:+13963998 Msa0057740:CDS
TTTCCCTTGAGTCCAAGCTT+TGG 0.389465 1_2:-13966836 None:intergenic
ATTTCATAGGTAGGATATAT+AGG 0.391468 1_2:+13965352 Msa0057740:intron
AAGTGGTAAGCTTGAGTAGC+TGG 0.392151 1_2:+13963875 Msa0057740:CDS
CCCTATATATTCAAGAGACT+TGG 0.394252 1_2:-13966904 None:intergenic
AGCTTTGGAAGATTTGCTTC+AGG 0.398464 1_2:+13964032 Msa0057740:CDS
AAGGAGAAGAGTGGTGAAGA+GGG 0.399260 1_2:-13961864 None:intergenic
GTTTGTCTAACAACATCTTT+CGG 0.411275 1_2:+13963412 Msa0057740:CDS
TTTGCAATTTCAAGATCATT+GGG 0.411874 1_2:-13965680 None:intergenic
AGGACTCTCTATCGACAAAT+CGG 0.413081 1_2:-13966763 None:intergenic
CAGGGGTATGGGAATAGCTT+TGG 0.414935 1_2:+13964017 Msa0057740:CDS
GGAACATAGAATAAAATTAT+GGG 0.424788 1_2:+13961793 Msa0057740:exon
CCGAAATGTGATTCCTCAAA+AGG 0.428593 1_2:-13963271 None:intergenic
TGCTAGAAAATACAGGGGTA+TGG 0.433372 1_2:+13964005 Msa0057740:CDS
CCTATGTGCAGTACTGGATA+AGG 0.435511 1_2:+13965428 Msa0057740:CDS
ATCATCAGCATTGGAGGCTC+CGG 0.440166 1_2:+13962910 Msa0057740:CDS
TCTTCTTGATTATCGTCTAA+AGG 0.440788 1_2:-13963610 None:intergenic
TTTGCTTTCAACAATTTATG+AGG 0.443404 1_2:+13962841 Msa0057740:CDS
TCTAGCAAAGTATAGAACTA+AGG 0.459983 1_2:-13963989 None:intergenic
ACAGTGCATTCAATAAACTT+TGG 0.463416 1_2:-13967126 None:intergenic
CCCTTGAGTCCAAGCTTTGG+AGG 0.467981 1_2:-13966833 None:intergenic
TGTCCATTCTAGCAAGAGAA+AGG 0.469422 1_2:+13963531 Msa0057740:CDS
TGTCAAATCGCTCTGCTCCT+TGG 0.471889 1_2:-13965381 None:intergenic
GAAAATAGAAGAAGAAAGAG+AGG 0.479685 1_2:+13963553 Msa0057740:CDS
TTCAGGTAAATAAAGGAAAG+AGG 0.481787 1_2:+13963206 Msa0057740:intron
AATGTGACGTAGCTGGAGGC+AGG 0.486847 1_2:+13962789 Msa0057740:intron
GTATCGCGGCATTGAATACA+TGG 0.488890 1_2:+13965769 Msa0057740:CDS
TCTCAACCTATGTGCAGTAC+TGG 0.489155 1_2:+13965422 Msa0057740:CDS
AAGTTAGCAAAGAATGGATA+AGG 0.493553 1_2:+13966937 Msa0057740:CDS
TCCTCCAAAGCTTGGACTCA+AGG 0.494978 1_2:+13966832 Msa0057740:CDS
AAAGGAGAAGAGTGGTGAAG+AGG 0.495785 1_2:-13961865 None:intergenic
AAGAGCGGTGATTGCTCAAA+GGG 0.498014 1_2:+13963690 Msa0057740:CDS
TTTATTCTATGTTCCATGAA+AGG 0.499252 1_2:-13961785 None:intergenic
GGAAATGTCAAAAGGTGTAA+AGG 0.501027 1_2:+13963717 Msa0057740:CDS
AAGAAACTGTTCTTAGACAA+TGG 0.501314 1_2:-13965742 None:intergenic
AGAAGATGAAGATGAAGAAG+AGG 0.506955 1_2:-13961911 None:intergenic
ACATGATATCCTCCAAAGCT+TGG 0.510778 1_2:+13966824 Msa0057740:CDS
CTTTCAACAATTTATGAGGA+AGG 0.515733 1_2:+13962845 Msa0057740:CDS
CTTGAAATTGCAAAGATGAC+AGG 0.516829 1_2:+13965689 Msa0057740:CDS
AAGGAAATCAATGTCAAGAA+TGG 0.518039 1_2:+13965447 Msa0057740:CDS
GCTAGAAAATACAGGGGTAT+GGG 0.518577 1_2:+13964006 Msa0057740:CDS
ATATGTGAATGAGTGAAGAA+AGG 0.520286 1_2:-13961883 None:intergenic
TTGCAAGGGAGATGAAGAAC+TGG 0.521191 1_2:+13961683 None:intergenic
CTACAACAGCAACTGTATCA+TGG 0.521397 1_2:+13963928 Msa0057740:CDS
CCTATATATTCAAGAGACTT+GGG 0.523071 1_2:-13966903 None:intergenic
AGCATCTGGAGTTGACGAAA+AGG 0.525544 1_2:+13963903 Msa0057740:CDS
AGATCCATTACGTTCTTCAC+CGG 0.526005 1_2:+13963630 Msa0057740:CDS
CCTCCAAAGCTTGGACTCAA+GGG 0.531320 1_2:+13966833 Msa0057740:CDS
GGATCGAGAGGAAGGTGCTA+TGG 0.531414 1_2:-13963584 None:intergenic
CACAAAGTAGATGACTATAC+AGG 0.532204 1_2:+13963499 Msa0057740:CDS
CAGATACTAATCCTACGATT+CGG 0.533151 1_2:+13966861 Msa0057740:CDS
CCTTATCCAGTACTGCACAT+AGG 0.551255 1_2:-13965428 None:intergenic
GAAAGCAAAGACAACCTCAC+AGG 0.556099 1_2:-13962827 None:intergenic
AGTGGTAAGCTTGAGTAGCT+GGG 0.558761 1_2:+13963876 Msa0057740:CDS
TGGGTTGATGATCATCAGTA+AGG 0.563057 1_2:-13966884 None:intergenic
GAGTGAAGAAAGGAGAAGAG+TGG 0.563755 1_2:-13961873 None:intergenic
AAAGATGACAGGTCTTTCAC+TGG 0.565471 1_2:+13965700 Msa0057740:CDS
TTGATTATCGTCTAAAGGCA+AGG 0.567819 1_2:-13963605 None:intergenic
GAGCGATTTGACAGTACAAG+AGG 0.568669 1_2:+13965391 Msa0057740:CDS
GGACTCTCTATCGACAAATC+GGG 0.571163 1_2:-13966762 None:intergenic
ACTGCACATAGGTTGAGAAT+CGG 0.572145 1_2:-13965417 None:intergenic
AAAGAGCGGTGATTGCTCAA+AGG 0.572707 1_2:+13963689 Msa0057740:CDS
TGATTCGGAAGCATTGAGGT+TGG 0.577266 1_2:+13963336 Msa0057740:CDS
ATAATGCAACTAGAAAAGCT+TGG 0.577465 1_2:+13963370 Msa0057740:CDS
CATCAGTAAGGCCGAATCGT+AGG 0.579004 1_2:-13966872 None:intergenic
TTGCTGATTCGGAAGCATTG+AGG 0.585058 1_2:+13963332 Msa0057740:CDS
AGGGAGGTGGAAATGTCAAA+AGG 0.586693 1_2:+13963709 Msa0057740:CDS
AATTAGAACAGCTATAGAAG+AGG 0.591677 1_2:+13963843 Msa0057740:CDS
ATACTTTGCTAGAAAATACA+GGG 0.594173 1_2:+13963999 Msa0057740:CDS
AAAGGCAAGGATCGAGAGGA+AGG 0.595520 1_2:-13963592 None:intergenic
AAAGCTTGGACTCAAGGGAA+AGG 0.596464 1_2:+13966838 Msa0057740:CDS
TCTGTATATGGGGATTATGA+GGG 0.600375 1_2:+13967084 Msa0057740:three_prime_UTR
GTCTAAAGGCAAGGATCGAG+AGG 0.607879 1_2:-13963596 None:intergenic
TAAGTCAGATCCAGAAAGCA+CGG 0.609321 1_2:+13965627 Msa0057740:CDS
GGGAGATGAAGAACTGGTGG+TGG 0.613888 1_2:+13961689 Msa0057740:five_prime_UTR
ATGTGACGTAGCTGGAGGCA+GGG 0.615472 1_2:+13962790 Msa0057740:intron
GGTGATTGCTCAAAGGGAGG+TGG 0.619765 1_2:+13963696 Msa0057740:CDS
AGAAGAGTGGTGAAGAGGGA+CGG 0.621793 1_2:-13961860 None:intergenic
AGAAGAGGATACAAAGCAAG+TGG 0.626241 1_2:+13963858 Msa0057740:CDS
GAAATCAATGTCAAGAATGG+TGG 0.626575 1_2:+13965450 Msa0057740:CDS
GAAGCCGGTGAAGAACGTAA+TGG 0.630391 1_2:-13963634 None:intergenic
TCAGATCCAGAAAGCACGGA+AGG 0.632240 1_2:+13965631 Msa0057740:CDS
AAAGCAAAGACAACCTCACA+GGG 0.634488 1_2:-13962826 None:intergenic
GAAAGGCTGTGCAAAGTTTG+GGG 0.636254 1_2:-13961768 None:intergenic
GCTGTGCAAAGTTTGGGGAA+AGG 0.640568 1_2:-13961763 None:intergenic
GGTTTGTTAATGGAGAACCT+TGG 0.645273 1_2:+13963292 Msa0057740:CDS
AAACTTTATTCAACCCTGTG+AGG 0.647408 1_2:+13962813 Msa0057740:CDS
GGATATATAGGTGTTCTCCA+AGG 0.651530 1_2:+13965364 Msa0057740:CDS
ACAGTTTCTTCAATGTATCG+CGG 0.667801 1_2:+13965755 Msa0057740:CDS
AGCGGTGATTGCTCAAAGGG+AGG 0.670598 1_2:+13963693 Msa0057740:CDS
GCAAGGAGGAGAACTAACAA+AGG 0.676146 1_2:+13962946 Msa0057740:CDS
AAGTTTCTTCTAAAACACCA+AGG 0.678399 1_2:-13963309 None:intergenic
AGTCTCTTGAATATATAGGG+AGG 0.683476 1_2:+13966907 Msa0057740:CDS
CAAGGGAGATGAAGAACTGG+TGG 0.702546 1_2:+13961686 Msa0057740:five_prime_UTR
ATGGTGGCGAAATATGCTCG+AGG 0.710363 1_2:+13965466 Msa0057740:CDS
AGTGCAGTTCGATATGCATG+AGG 0.733742 1_2:-13963437 None:intergenic
TACTTTGCTAGAAAATACAG+GGG 0.744271 1_2:+13964000 Msa0057740:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAATTAGCAAAATAAAAT+AGG - chr1_2:13961990-13962009 None:intergenic 10.0%
!! TTTCATCTAAAAATAAATTT+CGG + chr1_2:13964514-13964533 Msa0057740:intron 10.0%
!! AATTTAGTTAAAAGTAATTA+TGG - chr1_2:13964757-13964776 None:intergenic 10.0%
!!! TTTTAAATAAAATTACTAGT+CGG - chr1_2:13965859-13965878 None:intergenic 10.0%
!!! AAATTCAACAAATTTTTAAA+TGG + chr1_2:13966174-13966193 Msa0057740:intron 10.0%
!!! TACTAGATAAAAATAATTTT+AGG - chr1_2:13966702-13966721 None:intergenic 10.0%
!!! TTTTTTTCACTTTGAATTTT+GGG + chr1_2:13962762-13962781 Msa0057740:intron 15.0%
!! TATTCATTCTTCTAAATATA+AGG - chr1_2:13963128-13963147 None:intergenic 15.0%
!!! CTTAAAAATATTTGTTTTTC+AGG + chr1_2:13963189-13963208 Msa0057740:intron 15.0%
!! AAATACTAAAAATAAAAGAG+CGG + chr1_2:13963675-13963694 Msa0057740:CDS 15.0%
!!! ACATTTTCTATATATTATTG+TGG + chr1_2:13964094-13964113 Msa0057740:intron 15.0%
!!! AGTTTTAAATTTTAAACATG+AGG + chr1_2:13964820-13964839 Msa0057740:intron 15.0%
!! TGTTGTTACATAAAAAGTTA+AGG - chr1_2:13961737-13961756 None:intergenic 20.0%
!! TGGAACATAGAATAAAATTA+TGG + chr1_2:13961792-13961811 Msa0057740:exon 20.0%
!! GGAACATAGAATAAAATTAT+GGG + chr1_2:13961793-13961812 Msa0057740:exon 20.0%
!! AATATCATTACTCTAAGTAA+AGG - chr1_2:13962024-13962043 None:intergenic 20.0%
!! TATATCATACAATTGATTGT+CGG - chr1_2:13962153-13962172 None:intergenic 20.0%
!! ATAAACTTATGAACTTAACA+GGG - chr1_2:13962415-13962434 None:intergenic 20.0%
!! TATAAACTTATGAACTTAAC+AGG - chr1_2:13962416-13962435 None:intergenic 20.0%
!!! AAACTCGATAATTTTAACTA+TGG - chr1_2:13962689-13962708 None:intergenic 20.0%
!!! CTTTTTTTCACTTTGAATTT+TGG + chr1_2:13962761-13962780 Msa0057740:intron 20.0%
!!! TTTATGTTGATAGCTAAAAT+TGG + chr1_2:13963157-13963176 Msa0057740:intron 20.0%
!!! TTATGTTGATAGCTAAAATT+GGG + chr1_2:13963158-13963177 Msa0057740:intron 20.0%
!!! TTTGTTTTTCAGGTAAATAA+AGG + chr1_2:13963199-13963218 Msa0057740:intron 20.0%
!! CAATAAAATATCGAGTTATT+CGG + chr1_2:13963752-13963771 Msa0057740:intron 20.0%
!!! TTTTCTATATATTATTGTGG+AGG + chr1_2:13964097-13964116 Msa0057740:intron 20.0%
!!! GATTAACAATGGATATTTTA+TGG + chr1_2:13964199-13964218 Msa0057740:intron 20.0%
!! ATGAAAACTTAACATTTGTT+TGG - chr1_2:13964500-13964519 None:intergenic 20.0%
!!! TTAAATTTTAAACATGAGGT+CGG + chr1_2:13964824-13964843 Msa0057740:intron 20.0%
!!! GTATAATTGGACAATATTTT+TGG + chr1_2:13964914-13964933 Msa0057740:intron 20.0%
!!! TTTTGTAAATACTTTATAGC+AGG + chr1_2:13965180-13965199 Msa0057740:intron 20.0%
!! AATTTAGGAGTTTACATATT+TGG - chr1_2:13965911-13965930 None:intergenic 20.0%
!! TCAATAGTAAGAAATATGTT+TGG - chr1_2:13965962-13965981 None:intergenic 20.0%
!! TAGTTTAATGAGTAGTTAAT+GGG + chr1_2:13966224-13966243 Msa0057740:intron 20.0%
!! AAATCTTTAAATGGTTAACA+CGG - chr1_2:13966485-13966504 None:intergenic 20.0%
!! AAATTCGACAAATCTTTAAA+TGG - chr1_2:13966494-13966513 None:intergenic 20.0%
!! CTCAAAGTTGAATTATTATT+TGG + chr1_2:13967007-13967026 Msa0057740:CDS 20.0%
!!! ATCTATTTTCATCTGTATAT+GGG + chr1_2:13967073-13967092 Msa0057740:three_prime_UTR 20.0%
! TTTATTCTATGTTCCATGAA+AGG - chr1_2:13961788-13961807 None:intergenic 25.0%
!!! ATTGATTAATTTTGATGCAC+TGG + chr1_2:13962117-13962136 Msa0057740:intron 25.0%
!!! GAGTACAATTATTTTACACA+TGG - chr1_2:13962302-13962321 None:intergenic 25.0%
! GTAAAATAATTGTACTCTGA+CGG + chr1_2:13962305-13962324 Msa0057740:intron 25.0%
! TAAAATAATTGTACTCTGAC+GGG + chr1_2:13962306-13962325 Msa0057740:intron 25.0%
! TTTGGATCACTAAATATATC+TGG - chr1_2:13962354-13962373 None:intergenic 25.0%
! ACTAATTCAATCATAATGGT+TGG - chr1_2:13962378-13962397 None:intergenic 25.0%
! TGACACTAATTCAATCATAA+TGG - chr1_2:13962382-13962401 None:intergenic 25.0%
! TTTCATATATTAAGGTTCCT+GGG - chr1_2:13962603-13962622 None:intergenic 25.0%
!! TTTTCATATATTAAGGTTCC+TGG - chr1_2:13962604-13962623 None:intergenic 25.0%
! TTTGCTTTCAACAATTTATG+AGG + chr1_2:13962841-13962860 Msa0057740:CDS 25.0%
!!! TATGTTGATAGCTAAAATTG+GGG + chr1_2:13963159-13963178 Msa0057740:intron 25.0%
! TATACTTTGCTAGAAAATAC+AGG + chr1_2:13963998-13964017 Msa0057740:CDS 25.0%
! ATACTTTGCTAGAAAATACA+GGG + chr1_2:13963999-13964018 Msa0057740:CDS 25.0%
! ATATATGTTTGTGTATGAGA+TGG + chr1_2:13964267-13964286 Msa0057740:intron 25.0%
! TTAACATTTGTTTGGATACA+CGG - chr1_2:13964492-13964511 None:intergenic 25.0%
!! TTTTTATTCTCAACTATCGT+GGG + chr1_2:13964650-13964669 Msa0057740:intron 25.0%
!!! CAGTATTTTTGTAATCTTCA+AGG + chr1_2:13964788-13964807 Msa0057740:intron 25.0%
! TGTAATCTTCAAGGAATATA+AGG + chr1_2:13964797-13964816 Msa0057740:intron 25.0%
!! TAAATTTTAAACATGAGGTC+GGG + chr1_2:13964825-13964844 Msa0057740:intron 25.0%
! TGAAAGAGATTAACATGAAA+AGG + chr1_2:13964978-13964997 Msa0057740:intron 25.0%
! TAAATACTTTATAGCAGGAA+AGG + chr1_2:13965185-13965204 Msa0057740:intron 25.0%
! ATTGATCAAACCATTAATGA+TGG - chr1_2:13965235-13965254 None:intergenic 25.0%
! GAATAACATACAGGTTATTA+AGG - chr1_2:13965325-13965344 None:intergenic 25.0%
! TTATTCTCTTCACATTTCAT+AGG + chr1_2:13965339-13965358 Msa0057740:intron 25.0%
! ATTTCATAGGTAGGATATAT+AGG + chr1_2:13965352-13965371 Msa0057740:intron 25.0%
!! CTTTTCATTACTCTTTTTAG+TGG + chr1_2:13965588-13965607 Msa0057740:intron 25.0%
! TTTGCAATTTCAAGATCATT+GGG - chr1_2:13965683-13965702 None:intergenic 25.0%
! AAAAAGAAGAAGTAACAATG+GGG - chr1_2:13965821-13965840 None:intergenic 25.0%
! GAAAAAGAAGAAGTAACAAT+GGG - chr1_2:13965822-13965841 None:intergenic 25.0%
! AGAAAAAGAAGAAGTAACAA+TGG - chr1_2:13965823-13965842 None:intergenic 25.0%
! TAGATACGACTACATAAATT+TGG + chr1_2:13966002-13966021 Msa0057740:intron 25.0%
!!! GCCATTTTAAACAACAATTT+GGG + chr1_2:13966145-13966164 Msa0057740:intron 25.0%
!!! TCCCAAATTGTTGTTTAAAA+TGG - chr1_2:13966149-13966168 None:intergenic 25.0%
! GTAGTTTAATGAGTAGTTAA+TGG + chr1_2:13966223-13966242 Msa0057740:intron 25.0%
! GGTTAATTAAGTTCAGTTAA+TGG - chr1_2:13966276-13966295 None:intergenic 25.0%
! TGTTCAAATTTGTGGTTAAT+TGG - chr1_2:13966297-13966316 None:intergenic 25.0%
! GTTAGTAATGTTCAAATTTG+TGG - chr1_2:13966305-13966324 None:intergenic 25.0%
! GGTTAATAAAGTTCTGTAAA+TGG + chr1_2:13966395-13966414 Msa0057740:intron 25.0%
!!! ATTTGGTTGATAGATATATC+AGG - chr1_2:13966434-13966453 None:intergenic 25.0%
!! TTTTCAAAGTTAGCAAAGAA+TGG + chr1_2:13966931-13966950 Msa0057740:CDS 25.0%
!! CATCTATTTTCATCTGTATA+TGG + chr1_2:13967072-13967091 Msa0057740:three_prime_UTR 25.0%
!! TCTATTTTCATCTGTATATG+GGG + chr1_2:13967074-13967093 Msa0057740:three_prime_UTR 25.0%
ATATGTGAATGAGTGAAGAA+AGG - chr1_2:13961886-13961905 None:intergenic 30.0%
TCATTACTCTAAGTAAAGGA+GGG - chr1_2:13962020-13962039 None:intergenic 30.0%
ATCATTACTCTAAGTAAAGG+AGG - chr1_2:13962021-13962040 None:intergenic 30.0%
AAAATAATTGTACTCTGACG+GGG + chr1_2:13962307-13962326 Msa0057740:intron 30.0%
TCAATCATAATGGTTGGATT+TGG - chr1_2:13962372-13962391 None:intergenic 30.0%
TTCATATATTAAGGTTCCTG+GGG - chr1_2:13962602-13962621 None:intergenic 30.0%
CTTTCAACAATTTATGAGGA+AGG + chr1_2:13962845-13962864 Msa0057740:CDS 30.0%
! CCTTGCAATAAATCTTTTTC+CGG - chr1_2:13962932-13962951 None:intergenic 30.0%
GAAAAAGATTTATTGCAAGG+AGG + chr1_2:13962932-13962951 Msa0057740:CDS 30.0%
CATGATTGTATACAAAGCAA+AGG - chr1_2:13962985-13963004 None:intergenic 30.0%
CTTTGCTTTGTATACAATCA+TGG + chr1_2:13962983-13963002 Msa0057740:intron 30.0%
!! ATGTTGATAGCTAAAATTGG+GGG + chr1_2:13963160-13963179 Msa0057740:intron 30.0%
TTCAGGTAAATAAAGGAAAG+AGG + chr1_2:13963206-13963225 Msa0057740:intron 30.0%
!! ATCACATTTCGGTTTGTTAA+TGG + chr1_2:13963282-13963301 Msa0057740:CDS 30.0%
!! AAGTTTCTTCTAAAACACCA+AGG - chr1_2:13963312-13963331 None:intergenic 30.0%
!! AGAAGAAACTTTTGCTGATT+CGG + chr1_2:13963321-13963340 Msa0057740:CDS 30.0%
ATAATGCAACTAGAAAAGCT+TGG + chr1_2:13963370-13963389 Msa0057740:CDS 30.0%
GTTTGTCTAACAACATCTTT+CGG + chr1_2:13963412-13963431 Msa0057740:CDS 30.0%
GAAAATAGAAGAAGAAAGAG+AGG + chr1_2:13963553-13963572 Msa0057740:CDS 30.0%
TCTTCTTGATTATCGTCTAA+AGG - chr1_2:13963613-13963632 None:intergenic 30.0%
ATTTGCGTAATTTACAAGCA+TGG - chr1_2:13963780-13963799 None:intergenic 30.0%
!! TTAAAGTTTTGTACTACTCC+AGG + chr1_2:13963801-13963820 Msa0057740:intron 30.0%
AATTAGAACAGCTATAGAAG+AGG + chr1_2:13963843-13963862 Msa0057740:CDS 30.0%
TCTAGCAAAGTATAGAACTA+AGG - chr1_2:13963992-13964011 None:intergenic 30.0%
TACTTTGCTAGAAAATACAG+GGG + chr1_2:13964000-13964019 Msa0057740:CDS 30.0%
TTTGCCAAACAAACACTTAA+TGG - chr1_2:13964366-13964385 None:intergenic 30.0%
TAAGTGTTTGTTTGGCAAAT+AGG + chr1_2:13964367-13964386 Msa0057740:intron 30.0%
TTTGGCAAATAGGAAAATCA+CGG + chr1_2:13964377-13964396 Msa0057740:intron 30.0%
AATTCACGTTCAAATTGTCT+AGG + chr1_2:13964444-13964463 Msa0057740:intron 30.0%
ATTCACGTTCAAATTGTCTA+GGG + chr1_2:13964445-13964464 Msa0057740:intron 30.0%
TGCTTGATCTATCATGAAAA+GGG - chr1_2:13964599-13964618 None:intergenic 30.0%
TTATAAACTTCTGTGCATGT+CGG - chr1_2:13964629-13964648 None:intergenic 30.0%
! CTTTTTATTCTCAACTATCG+TGG + chr1_2:13964649-13964668 Msa0057740:intron 30.0%
AAAATAGAGAATGATTAGCG+AGG + chr1_2:13964701-13964720 Msa0057740:intron 30.0%
! AAATTTTAAACATGAGGTCG+GGG + chr1_2:13964826-13964845 Msa0057740:intron 30.0%
! TTTTAAACTCTGTTCACTCA+AGG + chr1_2:13964870-13964889 Msa0057740:intron 30.0%
AAGGTGATTTGAAAGATTCA+AGG + chr1_2:13964889-13964908 Msa0057740:intron 30.0%
AGGTGATTTGAAAGATTCAA+GGG + chr1_2:13964890-13964909 Msa0057740:intron 30.0%
! AAGATTCAAGGGTGTATAAT+TGG + chr1_2:13964901-13964920 Msa0057740:intron 30.0%
!!! GGACAATATTTTTGGAAACT+CGG + chr1_2:13964922-13964941 Msa0057740:intron 30.0%
TATATAGGCAAATATACTGC+CGG - chr1_2:13964951-13964970 None:intergenic 30.0%
CTCTTTCATGTAGACTATAT+AGG - chr1_2:13964966-13964985 None:intergenic 30.0%
! TAGAGTGTTTCCATCATTAA+TGG + chr1_2:13965222-13965241 Msa0057740:intron 30.0%
ATGTGAAGAGAATAACATAC+AGG - chr1_2:13965334-13965353 None:intergenic 30.0%
AAGGAAATCAATGTCAAGAA+TGG + chr1_2:13965447-13965466 Msa0057740:CDS 30.0%
TAACGCAAAGATCAAATTCA+TGG - chr1_2:13965563-13965582 None:intergenic 30.0%
AAGATCATTGGGATATTTCA+TGG - chr1_2:13965672-13965691 None:intergenic 30.0%
CTTTGCAATTTCAAGATCAT+TGG - chr1_2:13965684-13965703 None:intergenic 30.0%
AAGAAACTGTTCTTAGACAA+TGG - chr1_2:13965745-13965764 None:intergenic 30.0%
! CTTCTTTTTCTGTTATGTTG+TGG + chr1_2:13965832-13965851 Msa0057740:intron 30.0%
TGAATGTCAACCAAAAAAAC+AGG + chr1_2:13966036-13966055 Msa0057740:intron 30.0%
GAATGTCAACCAAAAAAACA+GGG + chr1_2:13966037-13966056 Msa0057740:intron 30.0%
!!! TTTTCAACACCCTGTTTTTT+TGG - chr1_2:13966049-13966068 None:intergenic 30.0%
ATGTCTTGTAAACATCAGAA+AGG + chr1_2:13966123-13966142 Msa0057740:intron 30.0%
!! GGCCATTTTAAACAACAATT+TGG + chr1_2:13966144-13966163 Msa0057740:intron 30.0%
! GTTAATGGGTATATCAAGAT+TGG + chr1_2:13966238-13966257 Msa0057740:intron 30.0%
TGAACATTACTAACGATTTC+AGG + chr1_2:13966311-13966330 Msa0057740:intron 30.0%
! TTTTCAAATCTCCATGTAGT+TGG - chr1_2:13966341-13966360 None:intergenic 30.0%
GTTGATCACATTTCAAATTG+TGG + chr1_2:13966374-13966393 Msa0057740:intron 30.0%
! TTGAACTTGAACATCAGTTT+TGG - chr1_2:13966523-13966542 None:intergenic 30.0%
!!! ACTTACTTTCTTTTTTCCCT+CGG + chr1_2:13966585-13966604 Msa0057740:intron 30.0%
! GTTTTTATGTCCATGTATGT+TGG + chr1_2:13966609-13966628 Msa0057740:intron 30.0%
CATGAATATACCAACATACA+TGG - chr1_2:13966622-13966641 None:intergenic 30.0%
CCTATATATTCAAGAGACTT+GGG - chr1_2:13966906-13966925 None:intergenic 30.0%
CCAAGTCTCTTGAATATATA+GGG + chr1_2:13966904-13966923 Msa0057740:CDS 30.0%
AAGTTAGCAAAGAATGGATA+AGG + chr1_2:13966937-13966956 Msa0057740:CDS 30.0%
TTGGATCTGTAGTTTATCAT+TGG + chr1_2:13967026-13967045 Msa0057740:exon 30.0%
ACAGTGCATTCAATAAACTT+TGG - chr1_2:13967129-13967148 None:intergenic 30.0%
AAAATTATGGGTCTCTGCTT+TGG + chr1_2:13961805-13961824 Msa0057740:exon 35.0%
AGAAGATGAAGATGAAGAAG+AGG - chr1_2:13961914-13961933 None:intergenic 35.0%
TCTTCTTCATCTTCATCTTC+TGG + chr1_2:13961913-13961932 Msa0057740:CDS 35.0%
ATACAATTGATTGTCGGTGA+TGG - chr1_2:13962147-13962166 None:intergenic 35.0%
ATTAGTATGCTATGTCAGTC+AGG + chr1_2:13962181-13962200 Msa0057740:intron 35.0%
TTAGTATGCTATGTCAGTCA+GGG + chr1_2:13962182-13962201 Msa0057740:intron 35.0%
TGGTCAAAGATTGTTAGCAA+GGG - chr1_2:13962533-13962552 None:intergenic 35.0%
TTGGTCAAAGATTGTTAGCA+AGG - chr1_2:13962534-13962553 None:intergenic 35.0%
GTTTGGAGGTAAGTAAAGTT+TGG - chr1_2:13962553-13962572 None:intergenic 35.0%
TCATATATTAAGGTTCCTGG+GGG - chr1_2:13962601-13962620 None:intergenic 35.0%
TGTGATTTCCAGTTAGAAGA+AGG + chr1_2:13962660-13962679 Msa0057740:intron 35.0%
TATGGTATCCTTCTTCTAAC+TGG - chr1_2:13962671-13962690 None:intergenic 35.0%
AAACTTTATTCAACCCTGTG+AGG + chr1_2:13962813-13962832 Msa0057740:CDS 35.0%
! TGCATTTTCATCATCAGCAT+TGG + chr1_2:13962901-13962920 Msa0057740:CDS 35.0%
!! ATTTTCATCATCAGCATTGG+AGG + chr1_2:13962904-13962923 Msa0057740:CDS 35.0%
CCGGAAAAAGATTTATTGCA+AGG + chr1_2:13962929-13962948 Msa0057740:CDS 35.0%
!! CCTTTTGAGGAATCACATTT+CGG + chr1_2:13963271-13963290 Msa0057740:CDS 35.0%
CTGTATAGTCATCTACTTTG+TGG - chr1_2:13963501-13963520 None:intergenic 35.0%
CACAAAGTAGATGACTATAC+AGG + chr1_2:13963499-13963518 Msa0057740:CDS 35.0%
TTTCCTTTCTCTTGCTAGAA+TGG - chr1_2:13963537-13963556 None:intergenic 35.0%
TTGATTATCGTCTAAAGGCA+AGG - chr1_2:13963608-13963627 None:intergenic 35.0%
! GGAAATGTCAAAAGGTGTAA+AGG + chr1_2:13963717-13963736 Msa0057740:CDS 35.0%
ATTGTGGAGGAGTTTCTATT+TGG + chr1_2:13964110-13964129 Msa0057740:intron 35.0%
CATTGTTAATCGCAAAACTC+AGG - chr1_2:13964190-13964209 None:intergenic 35.0%
! CTGAGTTTTGCGATTAACAA+TGG + chr1_2:13964188-13964207 Msa0057740:intron 35.0%
ATGTTTGTGTATGAGATGGA+AGG + chr1_2:13964271-13964290 Msa0057740:intron 35.0%
TAGATAGAGTTCATGACACA+AGG + chr1_2:13964322-13964341 Msa0057740:intron 35.0%
ACCTCCATTAAGTGTTTGTT+TGG + chr1_2:13964359-13964378 Msa0057740:intron 35.0%
GCTAGTAGTTGTAGAGTTTA+TGG - chr1_2:13964417-13964436 None:intergenic 35.0%
AATTCTAGGTCAAAACTTGC+AGG - chr1_2:13964544-13964563 None:intergenic 35.0%
!! GTGCTTGTTTCTGAAATTCT+AGG - chr1_2:13964558-13964577 None:intergenic 35.0%
CTTGATCTATCATGAAAAGG+GGG - chr1_2:13964597-13964616 None:intergenic 35.0%
GCTTGATCTATCATGAAAAG+GGG - chr1_2:13964598-13964617 None:intergenic 35.0%
CTGCTTGATCTATCATGAAA+AGG - chr1_2:13964600-13964619 None:intergenic 35.0%
TTAGCGAGGAAAATGATCAT+CGG + chr1_2:13964715-13964734 Msa0057740:intron 35.0%
!! ATTTTTGGAAACTCGGTATC+CGG + chr1_2:13964929-13964948 Msa0057740:intron 35.0%
GAAAAGGTAAGACATAGTCA+AGG + chr1_2:13964994-13965013 Msa0057740:intron 35.0%
TAAGACATAGTCAAGGTTCT+TGG + chr1_2:13965001-13965020 Msa0057740:intron 35.0%
! TTTGTTGTCTGCATCACTTA+TGG + chr1_2:13965098-13965117 Msa0057740:intron 35.0%
TCTCTTCACATTTCATAGGT+AGG + chr1_2:13965343-13965362 Msa0057740:intron 35.0%
GAAATCAATGTCAAGAATGG+TGG + chr1_2:13965450-13965469 Msa0057740:CDS 35.0%
TAAGCAAAAGAGGAACATAC+AGG - chr1_2:13965502-13965521 None:intergenic 35.0%
! TGTATGTTCCTCTTTTGCTT+AGG + chr1_2:13965501-13965520 Msa0057740:intron 35.0%
!! TTTTTAGTGGTCGATGAACA+AGG + chr1_2:13965601-13965620 Msa0057740:intron 35.0%
CTTGAAATTGCAAAGATGAC+AGG + chr1_2:13965689-13965708 Msa0057740:CDS 35.0%
ACAGTTTCTTCAATGTATCG+CGG + chr1_2:13965755-13965774 Msa0057740:CDS 35.0%
CAACACTGCTTTCTCAATTT+AGG - chr1_2:13965926-13965945 None:intergenic 35.0%
CTCATTAAACTACGTTGATC+AGG - chr1_2:13966216-13966235 None:intergenic 35.0%
! GGTTAACGAAGTGTTAGATT+TGG - chr1_2:13966451-13966470 None:intergenic 35.0%
! GTTAACACGGTTTTTACACA+TGG - chr1_2:13966472-13966491 None:intergenic 35.0%
ACATTCATGCTTACTCTAAG+AGG - chr1_2:13966645-13966664 None:intergenic 35.0%
TTTCATGACATTCATTCTGC+AGG + chr1_2:13966731-13966750 Msa0057740:intron 35.0%
TTCATGACATTCATTCTGCA+GGG + chr1_2:13966732-13966751 Msa0057740:intron 35.0%
CAGATACTAATCCTACGATT+CGG + chr1_2:13966861-13966880 Msa0057740:CDS 35.0%
CCCAAGTCTCTTGAATATAT+AGG + chr1_2:13966903-13966922 Msa0057740:CDS 35.0%
CCCTATATATTCAAGAGACT+TGG - chr1_2:13966907-13966926 None:intergenic 35.0%
AGTCTCTTGAATATATAGGG+AGG + chr1_2:13966907-13966926 Msa0057740:CDS 35.0%
ATCTGTATATGGGGATTATG+AGG + chr1_2:13967083-13967102 Msa0057740:three_prime_UTR 35.0%
TCTGTATATGGGGATTATGA+GGG + chr1_2:13967084-13967103 Msa0057740:three_prime_UTR 35.0%
TGAAAGGCTGTGCAAAGTTT+GGG - chr1_2:13961772-13961791 None:intergenic 40.0%
ATGAAAGGCTGTGCAAAGTT+TGG - chr1_2:13961773-13961792 None:intergenic 40.0%
AAACTTTGCACAGCCTTTCA+TGG + chr1_2:13961772-13961791 Msa0057740:five_prime_UTR 40.0%
TACTCTAAGTAAAGGAGGGA+AGG - chr1_2:13962016-13962035 None:intergenic 40.0%
TTTAAATGTGACGTAGCTGG+AGG + chr1_2:13962785-13962804 Msa0057740:intron 40.0%
AAAGCAAAGACAACCTCACA+GGG - chr1_2:13962829-13962848 None:intergenic 40.0%
! TAACACGCAGTTACCTTTTG+AGG + chr1_2:13963258-13963277 Msa0057740:CDS 40.0%
CCGAAATGTGATTCCTCAAA+AGG - chr1_2:13963274-13963293 None:intergenic 40.0%
!! GGTTTGTTAATGGAGAACCT+TGG + chr1_2:13963292-13963311 Msa0057740:CDS 40.0%
TGTCCATTCTAGCAAGAGAA+AGG + chr1_2:13963531-13963550 Msa0057740:CDS 40.0%
AGATCCATTACGTTCTTCAC+CGG + chr1_2:13963630-13963649 Msa0057740:CDS 40.0%
! GCTCTTTTTGCAAAAGAAGC+CGG - chr1_2:13963652-13963671 None:intergenic 40.0%
TCTCTAATTCTGCTAGAACC+TGG - chr1_2:13963822-13963841 None:intergenic 40.0%
AGAAGAGGATACAAAGCAAG+TGG + chr1_2:13963858-13963877 Msa0057740:CDS 40.0%
CTACAACAGCAACTGTATCA+TGG + chr1_2:13963928-13963947 Msa0057740:CDS 40.0%
TGCTAGAAAATACAGGGGTA+TGG + chr1_2:13964005-13964024 Msa0057740:CDS 40.0%
! GCTAGAAAATACAGGGGTAT+GGG + chr1_2:13964006-13964025 Msa0057740:CDS 40.0%
!! AGCTTTGGAAGATTTGCTTC+AGG + chr1_2:13964032-13964051 Msa0057740:CDS 40.0%
GCCAAACAAACACTTAATGG+AGG - chr1_2:13964363-13964382 None:intergenic 40.0%
TGTAGAGTTTATGGAACGTG+CGG - chr1_2:13964408-13964427 None:intergenic 40.0%
ACATTTGTTTGGATACACGG+TGG - chr1_2:13964489-13964508 None:intergenic 40.0%
! GTGGGAAACATTGTTTTCTG+TGG + chr1_2:13964668-13964687 Msa0057740:intron 40.0%
AATCATGTGTAACTTCCCCA+CGG - chr1_2:13964852-13964871 None:intergenic 40.0%
!!! CATGTCGTTTTGGGTGAAAA+GGG - chr1_2:13965049-13965068 None:intergenic 40.0%
!!! CAACTGTTGCATGTCGTTTT+GGG - chr1_2:13965058-13965077 None:intergenic 40.0%
ACAGTTGCTTATGACGATGT+TGG + chr1_2:13965071-13965090 Msa0057740:intron 40.0%
CCACAAGTGAAGTTAACCTA+AGG - chr1_2:13965124-13965143 None:intergenic 40.0%
CCTTAGGTTAACTTCACTTG+TGG + chr1_2:13965121-13965140 Msa0057740:intron 40.0%
CAAAATGCTCTGTCTTCGAA+AGG - chr1_2:13965165-13965184 None:intergenic 40.0%
!! AAGGAGCATTCATGTATACG+TGG - chr1_2:13965306-13965325 None:intergenic 40.0%
GGATATATAGGTGTTCTCCA+AGG + chr1_2:13965364-13965383 Msa0057740:CDS 40.0%
! ACTGCACATAGGTTGAGAAT+CGG - chr1_2:13965420-13965439 None:intergenic 40.0%
! ATGTTCCTCTTTTGCTTAGG+AGG + chr1_2:13965504-13965523 Msa0057740:intron 40.0%
AACAACCTCCTAAGCAAAAG+AGG - chr1_2:13965512-13965531 None:intergenic 40.0%
TAAGTCAGATCCAGAAAGCA+CGG + chr1_2:13965627-13965646 Msa0057740:CDS 40.0%
AAAGATGACAGGTCTTTCAC+TGG + chr1_2:13965700-13965719 Msa0057740:CDS 40.0%
AGTAACAATGGGGCAAACAT+GGG - chr1_2:13965811-13965830 None:intergenic 40.0%
AAGTAACAATGGGGCAAACA+TGG - chr1_2:13965812-13965831 None:intergenic 40.0%
TAAACCATCATGTGTCCATG+AGG + chr1_2:13966557-13966576 Msa0057740:intron 40.0%
! GAAAGTAAGTGTTGTCCTCA+TGG - chr1_2:13966575-13966594 None:intergenic 40.0%
CATGGACATAAAAACACCGA+GGG - chr1_2:13966604-13966623 None:intergenic 40.0%
ACATGGACATAAAAACACCG+AGG - chr1_2:13966605-13966624 None:intergenic 40.0%
AGGACTCTCTATCGACAAAT+CGG - chr1_2:13966766-13966785 None:intergenic 40.0%
TGTTTCATGACAGTCTCTTC+AGG - chr1_2:13966786-13966805 None:intergenic 40.0%
ACATGATATCCTCCAAAGCT+TGG + chr1_2:13966824-13966843 Msa0057740:CDS 40.0%
!! TGGGTTGATGATCATCAGTA+AGG - chr1_2:13966887-13966906 None:intergenic 40.0%
GAAAGGCTGTGCAAAGTTTG+GGG - chr1_2:13961771-13961790 None:intergenic 45.0%
AAGGAGAAGAGTGGTGAAGA+GGG - chr1_2:13961867-13961886 None:intergenic 45.0%
AAAGGAGAAGAGTGGTGAAG+AGG - chr1_2:13961868-13961887 None:intergenic 45.0%
GAGTGAAGAAAGGAGAAGAG+TGG - chr1_2:13961876-13961895 None:intergenic 45.0%
ACTGATCACGTCTAAACGCA+CGG + chr1_2:13962227-13962246 Msa0057740:intron 45.0%
TAATTGTACTCTGACGGGGA+CGG + chr1_2:13962311-13962330 Msa0057740:intron 45.0%
TGTTAGCAAGGGTTCGAACT+CGG - chr1_2:13962522-13962541 None:intergenic 45.0%
CTTACCTCCAAACTGAACTC+CGG + chr1_2:13962560-13962579 Msa0057740:intron 45.0%
TGACAATCCGGAGTTCAGTT+TGG - chr1_2:13962570-13962589 None:intergenic 45.0%
ATTAAGGTTCCTGGGGGAAT+CGG - chr1_2:13962595-13962614 None:intergenic 45.0%
CTTAGTGTGTGTGTGTGTCT+TGG + chr1_2:13962635-13962654 Msa0057740:intron 45.0%
GGGTTTAAATGTGACGTAGC+TGG + chr1_2:13962782-13962801 Msa0057740:intron 45.0%
GAAAGCAAAGACAACCTCAC+AGG - chr1_2:13962830-13962849 None:intergenic 45.0%
GCAAGGAGGAGAACTAACAA+AGG + chr1_2:13962946-13962965 Msa0057740:CDS 45.0%
CAGAGAATCGCTGTCAAATG+TGG + chr1_2:13963042-13963061 Msa0057740:intron 45.0%
!! ACTGTGATTTTGGCAGCATC+AGG - chr1_2:13963068-13963087 None:intergenic 45.0%
TGATGCTGCCAAAATCACAG+TGG + chr1_2:13963067-13963086 Msa0057740:intron 45.0%
! TGTCTCTGCCACTGTGATTT+TGG - chr1_2:13963078-13963097 None:intergenic 45.0%
!! TTGCTGATTCGGAAGCATTG+AGG + chr1_2:13963332-13963351 Msa0057740:CDS 45.0%
!! TGATTCGGAAGCATTGAGGT+TGG + chr1_2:13963336-13963355 Msa0057740:CDS 45.0%
AGTGCAGTTCGATATGCATG+AGG - chr1_2:13963440-13963459 None:intergenic 45.0%
AAAGAGCGGTGATTGCTCAA+AGG + chr1_2:13963689-13963708 Msa0057740:CDS 45.0%
AAGAGCGGTGATTGCTCAAA+GGG + chr1_2:13963690-13963709 Msa0057740:CDS 45.0%
AGGGAGGTGGAAATGTCAAA+AGG + chr1_2:13963709-13963728 Msa0057740:CDS 45.0%
AAGTGGTAAGCTTGAGTAGC+TGG + chr1_2:13963875-13963894 Msa0057740:CDS 45.0%
AGTGGTAAGCTTGAGTAGCT+GGG + chr1_2:13963876-13963895 Msa0057740:CDS 45.0%
! AGCATCTGGAGTTGACGAAA+AGG + chr1_2:13963903-13963922 Msa0057740:CDS 45.0%
!!! GCATGTCGTTTTGGGTGAAA+AGG - chr1_2:13965050-13965069 None:intergenic 45.0%
!! GCAACTGTTGCATGTCGTTT+TGG - chr1_2:13965059-13965078 None:intergenic 45.0%
TCTGCATCACTTATGGCCTT+AGG + chr1_2:13965105-13965124 Msa0057740:intron 45.0%
GAGCGATTTGACAGTACAAG+AGG + chr1_2:13965391-13965410 Msa0057740:CDS 45.0%
TCTCAACCTATGTGCAGTAC+TGG + chr1_2:13965422-13965441 Msa0057740:CDS 45.0%
CCTTATCCAGTACTGCACAT+AGG - chr1_2:13965431-13965450 None:intergenic 45.0%
! CCTATGTGCAGTACTGGATA+AGG + chr1_2:13965428-13965447 Msa0057740:CDS 45.0%
! GTATCGCGGCATTGAATACA+TGG + chr1_2:13965769-13965788 Msa0057740:CDS 45.0%
TTTCAGGCGTTCCAACTACA+TGG + chr1_2:13966327-13966346 Msa0057740:intron 45.0%
TTGTCCTCATGGACACATGA+TGG - chr1_2:13966564-13966583 None:intergenic 45.0%
GGACTCTCTATCGACAAATC+GGG - chr1_2:13966765-13966784 None:intergenic 45.0%
TTTCCCTTGAGTCCAAGCTT+TGG - chr1_2:13966839-13966858 None:intergenic 45.0%
AAAGCTTGGACTCAAGGGAA+AGG + chr1_2:13966838-13966857 Msa0057740:CDS 45.0%
!! TTAATTAATATAAAACAAAA+AGG - chr1_2:13961953-13961972 None:intergenic 5.0%
!!! ATATATATTTTCATATATTA+AGG - chr1_2:13962611-13962630 None:intergenic 5.0%
CAAGGGAGATGAAGAACTGG+TGG + chr1_2:13961686-13961705 Msa0057740:five_prime_UTR 50.0%
GCTGTGCAAAGTTTGGGGAA+AGG - chr1_2:13961766-13961785 None:intergenic 50.0%
AGAAGAGTGGTGAAGAGGGA+CGG - chr1_2:13961863-13961882 None:intergenic 50.0%
GTGCGTTTAGACGTGATCAG+TGG - chr1_2:13962228-13962247 None:intergenic 50.0%
CTGATCACGTCTAAACGCAC+GGG + chr1_2:13962228-13962247 Msa0057740:intron 50.0%
AATTGTACTCTGACGGGGAC+GGG + chr1_2:13962312-13962331 Msa0057740:intron 50.0%
CAATCCGGAGTTCAGTTTGG+AGG - chr1_2:13962567-13962586 None:intergenic 50.0%
!! GGGGAATCGGTTTGACAATC+CGG - chr1_2:13962582-13962601 None:intergenic 50.0%
! ATTGTCAAACCGATTCCCCC+AGG + chr1_2:13962583-13962602 Msa0057740:intron 50.0%
! ATCATCAGCATTGGAGGCTC+CGG + chr1_2:13962910-13962929 Msa0057740:CDS 50.0%
AAAGGCAAGGATCGAGAGGA+AGG - chr1_2:13963595-13963614 None:intergenic 50.0%
GTCTAAAGGCAAGGATCGAG+AGG - chr1_2:13963599-13963618 None:intergenic 50.0%
GAAGCCGGTGAAGAACGTAA+TGG - chr1_2:13963637-13963656 None:intergenic 50.0%
! CAGGGGTATGGGAATAGCTT+TGG + chr1_2:13964017-13964036 Msa0057740:CDS 50.0%
GAGGAAAATGATCATCGGCG+TGG + chr1_2:13964720-13964739 Msa0057740:intron 50.0%
TGTCAAATCGCTCTGCTCCT+TGG - chr1_2:13965384-13965403 None:intergenic 50.0%
! ATGGTGGCGAAATATGCTCG+AGG + chr1_2:13965466-13965485 Msa0057740:CDS 50.0%
! TCAGATCCAGAAAGCACGGA+AGG + chr1_2:13965631-13965650 Msa0057740:CDS 50.0%
TCAAGACCTTCCGTGCTTTC+TGG - chr1_2:13965640-13965659 None:intergenic 50.0%
TCCTCCAAAGCTTGGACTCA+AGG + chr1_2:13966832-13966851 Msa0057740:CDS 50.0%
CCTCCAAAGCTTGGACTCAA+GGG + chr1_2:13966833-13966852 Msa0057740:CDS 50.0%
CATCAGTAAGGCCGAATCGT+AGG - chr1_2:13966875-13966894 None:intergenic 50.0%
GGGAGATGAAGAACTGGTGG+TGG + chr1_2:13961689-13961708 Msa0057740:five_prime_UTR 55.0%
ATTGTACTCTGACGGGGACG+GGG + chr1_2:13962313-13962332 Msa0057740:intron 55.0%
AATGTGACGTAGCTGGAGGC+AGG + chr1_2:13962789-13962808 Msa0057740:intron 55.0%
ATGTGACGTAGCTGGAGGCA+GGG + chr1_2:13962790-13962809 Msa0057740:intron 55.0%
!! GGATCGAGAGGAAGGTGCTA+TGG - chr1_2:13963587-13963606 None:intergenic 55.0%
AGCGGTGATTGCTCAAAGGG+AGG + chr1_2:13963693-13963712 Msa0057740:CDS 55.0%
GGTGATTGCTCAAAGGGAGG+TGG + chr1_2:13963696-13963715 Msa0057740:CDS 55.0%
!! AGTAGCTGGGCAGAAGCATC+TGG + chr1_2:13963889-13963908 Msa0057740:CDS 55.0%
GTTTGGATACACGGTGGCGT+TGG - chr1_2:13964483-13964502 None:intergenic 55.0%
! CCCTTGAGTCCAAGCTTTGG+AGG - chr1_2:13966836-13966855 None:intergenic 55.0%
TAAACATGAGGTCGGGGCCG+TGG + chr1_2:13964832-13964851 Msa0057740:intron 60.0%
AAACATGAGGTCGGGGCCGT+GGG + chr1_2:13964833-13964852 Msa0057740:intron 60.0%
AACATGAGGTCGGGGCCGTG+GGG + chr1_2:13964834-13964853 Msa0057740:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 13961685 13967211 13961685 ID=Msa0057740;Name=Msa0057740
chr1_2 mRNA 13961685 13967211 13961685 ID=Msa0057740-mRNA-1;Parent=Msa0057740;Name=Msa0057740-mRNA-1;_AED=0.07;_eAED=0.07;_QI=126|1|1|1|0.83|1|7|174|552
chr1_2 exon 13961685 13961934 13961685 ID=Msa0057740-mRNA-1:exon:5522;Parent=Msa0057740-mRNA-1
chr1_2 exon 13962801 13962967 13962801 ID=Msa0057740-mRNA-1:exon:5523;Parent=Msa0057740-mRNA-1
chr1_2 exon 13963211 13963738 13963211 ID=Msa0057740-mRNA-1:exon:5524;Parent=Msa0057740-mRNA-1
chr1_2 exon 13963823 13964053 13963823 ID=Msa0057740-mRNA-1:exon:5525;Parent=Msa0057740-mRNA-1
chr1_2 exon 13965361 13965501 13965361 ID=Msa0057740-mRNA-1:exon:5526;Parent=Msa0057740-mRNA-1
chr1_2 exon 13965608 13965790 13965608 ID=Msa0057740-mRNA-1:exon:5527;Parent=Msa0057740-mRNA-1
chr1_2 exon 13966753 13967211 13966753 ID=Msa0057740-mRNA-1:exon:5528;Parent=Msa0057740-mRNA-1
chr1_2 five_prime_UTR 13961685 13961810 13961685 ID=Msa0057740-mRNA-1:five_prime_utr;Parent=Msa0057740-mRNA-1
chr1_2 CDS 13961811 13961934 13961811 ID=Msa0057740-mRNA-1:cds;Parent=Msa0057740-mRNA-1
chr1_2 CDS 13962801 13962967 13962801 ID=Msa0057740-mRNA-1:cds;Parent=Msa0057740-mRNA-1
chr1_2 CDS 13963211 13963738 13963211 ID=Msa0057740-mRNA-1:cds;Parent=Msa0057740-mRNA-1
chr1_2 CDS 13963823 13964053 13963823 ID=Msa0057740-mRNA-1:cds;Parent=Msa0057740-mRNA-1
chr1_2 CDS 13965361 13965501 13965361 ID=Msa0057740-mRNA-1:cds;Parent=Msa0057740-mRNA-1
chr1_2 CDS 13965608 13965790 13965608 ID=Msa0057740-mRNA-1:cds;Parent=Msa0057740-mRNA-1
chr1_2 CDS 13966753 13967037 13966753 ID=Msa0057740-mRNA-1:cds;Parent=Msa0057740-mRNA-1
chr1_2 three_prime_UTR 13967038 13967211 13967038 ID=Msa0057740-mRNA-1:three_prime_utr;Parent=Msa0057740-mRNA-1
Gene Sequence

>Msa0057740

ATGGGTCTCTGCTTTGGTTTTAGACTAAACACTAAACTCAGATATAGTACCGTCCCTCTTCACCACTCTTCTCCTTTCTTCACTCATTCACATATCTTTACCTCTTCTTCATCTTCATCTTCTGCTGGAGGCAGGGAAACTTTATTCAACCCTGTGAGGTTGTCTTTGCTTTCAACAATTTATGAGGAAGGAGAAACTTTGCAGAAAGATTTTCGAAAGACATTTGCATTTTCATCATCAGCATTGGAGGCTCCGGAAAAAGATTTATTGCAAGGAGGAGAACTAACAAAGGTAAATAAAGGAAAGAGGTCGCTTAGTAGTGTGCATGAAATGACAGATAACACGCAGTTACCTTTTGAGGAATCACATTTCGGTTTGTTAATGGAGAACCTTGGTGTTTTAGAAGAAACTTTTGCTGATTCGGAAGCATTGAGGTTGGAAAAGAATATTATAATGCAACTAGAAAAGCTTGGAGCTCTTGAGTTGTTCAATGTTTGTCTAACAACATCTTTCGGAACCTCATGCATATCGAACTGCACTCACAAAGTTCTTGAACAAGTTGAAGAGAATAAGAGAAACCACAAAGTAGATGACTATACAGGTAAAGTTATTGTCCATTCTAGCAAGAGAAAGGAAAATAGAAGAAGAAAGAGAGGATCTGTTTCCATAGCACCTTCCTCTCGATCCTTGCCTTTAGACGATAATCAAGAAGATCCATTACGTTCTTCACCGGCTTCTTTTGCAAAAAGAGCATCAAATACTAAAAATAAAAGAGCGGTGATTGCTCAAAGGGAGGTGGAAATGTCAAAAGGTGTAAAGGTTCTAGCAGAATTAGAGAAAATTAGAACAGCTATAGAAGAGGATACAAAGCAAGTGGTAAGCTTGAGTAGCTGGGCAGAAGCATCTGGAGTTGACGAAAAGGTGCTACAACAGCAACTGTATCATGGCTATTATTGTAGAGATGAGTTGATACGCAGTACTCGTTCCTTAGTTCTATACTTTGCTAGAAAATACAGGGGTATGGGAATAGCTTTGGAAGATTTGCTTCAGGTAGGATATATAGGTGTTCTCCAAGGAGCAGAGCGATTTGACAGTACAAGAGGATACCGATTCTCAACCTATGTGCAGTACTGGATAAGGAAATCAATGTCAAGAATGGTGGCGAAATATGCTCGAGGAATCACTGTTCCTTGGTCGATGAACAAGGCAATAAGTCAGATCCAGAAAGCACGGAAGGTCTTGAAAAATACAACCATGAAATATCCCAATGATCTTGAAATTGCAAAGATGACAGGTCTTTCACTGGACAAAATCATGTCAGCTAGCCATTGTCTAAGAACAGTTTCTTCAATGTATCGCGGCATTGAATACATGGGTCATATGCCCGATTTGTCGATAGAGAGTCCTGAAGAGACTGTCATGAAACAGCACATTAAGAAAGATATACATGATATCCTCCAAAGCTTGGACTCAAGGGAAAGGCAGATACTAATCCTACGATTCGGCCTTACTGATGATCATCAACCCAAGTCTCTTGAATATATAGGGAGGATTTTCAAAGTTAGCAAAGAATGGATAAGGAAAATAGAGAAAAAAGCTCTCACAAAATTAAAGAATGAAACAAACATCTCAAAGTTGAATTATTATTTGGATCTGTAG

Protein sequence

>Msa0057740

MGLCFGFRLNTKLRYSTVPLHHSSPFFTHSHIFTSSSSSSSAGGRETLFNPVRLSLLSTIYEEGETLQKDFRKTFAFSSSALEAPEKDLLQGGELTKVNKGKRSLSSVHEMTDNTQLPFEESHFGLLMENLGVLEETFADSEALRLEKNIIMQLEKLGALELFNVCLTTSFGTSCISNCTHKVLEQVEENKRNHKVDDYTGKVIVHSSKRKENRRRKRGSVSIAPSSRSLPLDDNQEDPLRSSPASFAKRASNTKNKRAVIAQREVEMSKGVKVLAELEKIRTAIEEDTKQVVSLSSWAEASGVDEKVLQQQLYHGYYCRDELIRSTRSLVLYFARKYRGMGIALEDLLQVGYIGVLQGAERFDSTRGYRFSTYVQYWIRKSMSRMVAKYARGITVPWSMNKAISQIQKARKVLKNTTMKYPNDLEIAKMTGLSLDKIMSASHCLRTVSSMYRGIEYMGHMPDLSIESPEETVMKQHIKKDIHDILQSLDSRERQILILRFGLTDDHQPKSLEYIGRIFKVSKEWIRKIEKKALTKLKNETNISKLNYYLDL*