AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0574250

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0574250 MtrunA17_Chr8g0390521 96.976 496 15 0 1 496 1 496 0.0 967
Msa0574250 MtrunA17_Chr6g0485661 67.904 458 144 2 7 463 47 502 0.0 633
Msa0574250 MtrunA17_Chr4g0034681 50.305 491 235 3 15 496 27 517 1.09e-170 492
Msa0574250 MtrunA17_Chr8g0373531 51.129 487 228 4 3 479 4 490 5.89e-167 482
Msa0574250 MtrunA17_Chr3g0144361 51.042 480 220 3 2 471 17 491 1.07e-165 479
Msa0574250 MtrunA17_Chr4g0036021 50.535 467 224 2 12 471 21 487 3.00e-162 471
Msa0574250 MtrunA17_Chr5g0432581 47.773 494 248 4 1 484 2 495 3.13e-161 467
Msa0574250 MtrunA17_Chr2g0282031 47.881 472 235 4 15 486 50 510 2.87e-156 456
Msa0574250 MtrunA17_Chr4g0021771 45.511 479 250 4 8 486 45 512 6.02e-155 452
Msa0574250 MtrunA17_Chr5g0403831 41.245 514 275 4 1 490 1 511 5.93e-128 383
Msa0574250 MtrunA17_Chr4g0039651 32.909 471 270 10 23 469 50 498 2.76e-67 225
Msa0574250 MtrunA17_Chr4g0032021 31.992 472 284 12 19 469 97 552 4.25e-62 213
Msa0574250 MtrunA17_Chr1g0213611 31.799 478 301 9 7 473 67 530 1.04e-61 211
Msa0574250 MtrunA17_Chr5g0417611 30.242 496 306 12 2 471 9 490 1.11e-61 211
Msa0574250 MtrunA17_Chr7g0214451 30.992 484 311 7 15 489 30 499 2.81e-60 206
Msa0574250 MtrunA17_Chr1g0213631 31.818 462 288 8 37 486 4 450 1.47e-59 203
Msa0574250 MtrunA17_Chr5g0394341 27.953 508 314 10 13 483 17 509 2.89e-58 202
Msa0574250 MtrunA17_Chr3g0115781 26.706 513 332 9 1 481 8 508 1.17e-57 200
Msa0574250 MtrunA17_Chr8g0390261 27.112 509 320 10 13 487 21 512 4.70e-57 198
Msa0574250 MtrunA17_Chr6g0457781 31.685 445 280 10 28 468 115 539 5.25e-57 199
Msa0574250 MtrunA17_Chr3g0078991 28.425 489 318 8 7 473 12 490 5.27e-57 198
Msa0574250 MtrunA17_Chr4g0065311 27.869 488 316 9 6 471 9 482 7.77e-57 197
Msa0574250 MtrunA17_Chr5g0420841 28.343 501 310 11 19 483 22 509 9.20e-57 197
Msa0574250 MtrunA17_Chr7g0250881 30.958 449 278 9 28 468 75 499 1.11e-56 197
Msa0574250 MtrunA17_Chr3g0078971 26.908 498 325 10 1 474 8 490 4.74e-56 195
Msa0574250 MtrunA17_Chr3g0115721 27.888 502 314 10 13 480 18 505 5.37e-56 195
Msa0574250 MtrunA17_Chr6g0486681 27.022 507 326 10 13 492 21 510 5.71e-56 195
Msa0574250 MtrunA17_Chr6g0486671 27.022 507 326 10 13 492 21 510 5.71e-56 195
Msa0574250 MtrunA17_Chr3g0115711 27.953 508 308 13 1 474 6 489 1.84e-54 191
Msa0574250 MtrunA17_Chr3g0085971 28.306 484 304 11 16 471 20 488 3.92e-54 190
Msa0574250 MtrunA17_Chr3g0128081 27.168 519 327 13 2 484 8 511 5.38e-54 190
Msa0574250 MtrunA17_Chr3g0128171 28.640 419 280 7 59 471 37 442 2.07e-53 187
Msa0574250 MtrunA17_Chr4g0065324 26.923 494 317 10 3 470 14 489 3.69e-53 187
Msa0574250 MtrunA17_Chr8g0390141 29.060 468 288 10 31 471 39 489 4.85e-53 187
Msa0574250 MtrunA17_Chr3g0115741 27.071 495 317 9 19 481 27 509 6.65e-53 187
Msa0574250 MtrunA17_Chr1g0205681 27.291 491 310 10 13 473 18 491 8.16e-53 186
Msa0574250 MtrunA17_Chr2g0303731 36.257 342 199 7 15 348 23 353 4.72e-52 186
Msa0574250 MtrunA17_Chr5g0445601 28.340 494 307 11 3 467 9 484 7.59e-52 184
Msa0574250 MtrunA17_Chr1g0205671 28.921 491 288 12 13 467 18 483 3.40e-51 182
Msa0574250 MtrunA17_Chr1g0205691 29.109 505 299 12 25 486 29 517 7.53e-51 182
Msa0574250 MtrunA17_Chr7g0257631 27.677 495 311 11 6 471 46 522 5.04e-50 180
Msa0574250 MtrunA17_Chr3g0115751 27.824 478 306 10 19 471 29 492 1.05e-49 178
Msa0574250 MtrunA17_Chr3g0078791 27.896 423 266 8 59 475 29 418 1.17e-49 176
Msa0574250 MtrunA17_Chr1g0155221 28.571 462 294 10 21 471 52 488 2.77e-48 174
Msa0574250 MtrunA17_Chr8g0373181 28.908 467 297 10 12 468 41 482 6.89e-48 173
Msa0574250 MtrunA17_Chr4g0048051 28.601 479 304 12 18 471 24 489 1.08e-47 173
Msa0574250 MtrunA17_Chr8g0376631 35.474 327 202 5 15 338 23 343 1.37e-46 171
Msa0574250 MtrunA17_Chr8g0376631 31.707 123 80 1 370 492 451 569 6.98e-11 64.7
Msa0574250 MtrunA17_Chr1g0164871 28.513 491 298 14 13 471 18 487 1.39e-46 170
Msa0574250 MtrunA17_Chr1g0164851 28.717 491 297 14 13 471 18 487 2.25e-46 170
Msa0574250 MtrunA17_Chr4g0048411 29.048 420 276 9 83 496 108 511 3.67e-46 169
Msa0574250 MtrunA17_Chr2g0286721 28.298 470 307 7 3 468 37 480 6.17e-46 167
Msa0574250 MtrunA17_Chr2g0303701 33.628 339 209 5 15 348 23 350 3.12e-44 164
Msa0574250 MtrunA17_Chr4g0066581 30.126 478 292 14 1 468 38 483 1.65e-43 161
Msa0574250 MtrunA17_Chr5g0437021 26.190 504 313 14 2 471 9 487 3.21e-43 160
Msa0574250 MtrunA17_Chr8g0376601 33.333 339 217 5 13 348 21 353 4.39e-43 161
Msa0574250 MtrunA17_Chr7g0273281 27.331 472 307 9 17 485 64 502 1.09e-42 159
Msa0574250 MtrunA17_Chr3g0119401 28.261 460 288 11 23 468 98 529 1.62e-42 159
Msa0574250 MtrunA17_Chr2g0290181 32.353 340 214 6 17 348 26 357 1.28e-41 157
Msa0574250 MtrunA17_Chr2g0290181 37.778 90 56 0 382 471 467 556 2.76e-11 66.2
Msa0574250 MtrunA17_Chr7g0259471 26.050 476 316 11 5 469 21 471 7.72e-41 153
Msa0574250 MtrunA17_Chr8g0376611 34.892 278 171 4 68 343 12 281 7.60e-40 151
Msa0574250 MtrunA17_Chr4g0004821 28.838 482 310 10 2 475 20 476 8.59e-40 150
Msa0574250 MtrunA17_Chr8g0373191 28.330 473 272 15 17 473 38 459 9.18e-39 147
Msa0574250 MtrunA17_Chr6g0486021 29.348 460 294 10 16 468 48 483 9.58e-39 147
Msa0574250 MtrunA17_Chr3g0115731 26.061 495 292 12 3 467 12 462 2.41e-38 146
Msa0574250 MtrunA17_Chr7g0259221 25.053 475 322 10 5 469 23 473 6.63e-37 142
Msa0574250 MtrunA17_Chr4g0065351 27.807 374 240 9 136 493 1 360 1.65e-36 139
Msa0574250 MtrunA17_Chr3g0121674 29.412 306 205 3 179 480 1 299 8.18e-32 124
Msa0574250 MtrunA17_Chr2g0290161 28.819 288 156 6 76 353 21 269 5.75e-28 117
Msa0574250 MtrunA17_Chr5g0404191 32.314 229 144 4 19 246 51 269 1.92e-27 112
Msa0574250 MtrunA17_Chr5g0407441 29.756 205 140 4 19 220 5 208 3.38e-26 113
Msa0574250 MtrunA17_Chr5g0407441 26.786 224 143 6 254 465 489 703 1.31e-11 67.4
Msa0574250 MtrunA17_Chr3g0144261 29.557 203 141 2 19 220 5 206 6.46e-26 112
Msa0574250 MtrunA17_Chr3g0144261 30.894 246 145 6 253 484 496 730 3.10e-16 82.0
Msa0574250 MtrunA17_Chr8g0370141 31.884 207 133 4 16 217 2 205 1.25e-25 108
Msa0574250 MtrunA17_Chr5g0419321 30.978 184 123 3 40 220 54 236 4.65e-25 109
Msa0574250 MtrunA17_Chr5g0419321 27.234 235 140 5 254 471 515 735 5.36e-13 71.6
Msa0574250 MtrunA17_Chr3g0146061 34.000 200 118 6 29 220 15 208 1.32e-22 102
Msa0574250 MtrunA17_Chr3g0146061 27.477 222 144 6 254 465 507 721 1.45e-12 70.5
Msa0574250 MtrunA17_Chr5g0434231 33.333 180 93 3 55 234 2 154 1.18e-21 91.7
Msa0574250 MtrunA17_Chr7g0273261 28.295 258 165 6 229 483 9 249 2.57e-18 84.7
Msa0574250 MtrunA17_Chr7g0273271 25.248 202 143 2 3 204 13 206 1.67e-17 81.3
Msa0574250 MtrunA17_Chr5g0434251 35.484 93 60 0 381 473 49 141 3.76e-12 64.7
Msa0574250 MtrunA17_Chr5g0404181 35.922 103 59 2 369 468 30 128 8.79e-12 62.8
Msa0574250 MtrunA17_Chr3g0115771 23.197 319 181 13 128 439 7 268 1.00e-11 65.9
Msa0574250 MtrunA17_Chr4g0000061 23.108 502 315 16 16 476 27 498 1.49e-11 66.6
Msa0574250 MtrunA17_Chr5g0446681 23.039 204 138 3 3 205 7 192 2.41e-11 64.7
Msa0574250 MtrunA17_Chr8g0370151 26.772 254 170 5 227 471 102 348 4.15e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0574250 AT3G18830.1 51.619 494 227 4 15 496 33 526 1.35e-171 496
Msa0574250 AT4G36670.1 49.687 479 220 3 14 477 13 485 4.08e-170 490
Msa0574250 AT2G18480.1 51.178 467 220 3 13 471 17 483 7.39e-162 469
Msa0574250 AT2G16120.1 49.008 504 239 7 1 486 1 504 9.93e-162 469
Msa0574250 AT2G16130.1 48.024 506 243 8 1 486 1 506 7.64e-157 457
Msa0574250 AT2G20780.1 46.653 478 240 5 1 471 31 500 6.83e-155 452
Msa0574250 AT2G20780.2 45.212 449 236 5 47 495 26 464 2.29e-137 405
Msa0574250 AT5G17010.1 32.389 494 283 12 1 469 33 500 2.01e-63 215
Msa0574250 AT5G17010.3 32.389 494 283 12 1 469 33 500 2.01e-63 215
Msa0574250 AT5G17010.4 32.389 494 283 12 1 469 33 500 2.01e-63 215
Msa0574250 AT5G16150.2 33.183 443 276 8 28 468 115 539 6.24e-61 210
Msa0574250 AT5G16150.1 33.183 443 276 8 28 468 115 539 6.24e-61 210
Msa0574250 AT5G16150.3 33.183 443 276 8 28 468 115 539 6.24e-61 210
Msa0574250 AT2G43330.1 31.028 506 316 9 7 495 20 509 2.33e-60 207
Msa0574250 AT5G59250.1 31.847 471 278 12 23 469 103 554 1.14e-59 207
Msa0574250 AT3G03090.1 32.720 489 281 15 7 469 34 500 4.85e-59 204
Msa0574250 AT3G19930.1 28.599 514 321 12 8 488 13 513 8.14e-58 201
Msa0574250 AT3G19930.2 28.599 514 321 12 8 488 13 513 8.14e-58 201
Msa0574250 AT5G26340.1 27.477 535 322 12 3 494 10 521 1.46e-57 200
Msa0574250 AT1G77210.2 28.629 496 311 12 13 477 21 504 2.99e-57 199
Msa0574250 AT1G77210.1 28.629 496 311 12 13 477 21 504 2.99e-57 199
Msa0574250 AT3G19940.1 26.824 507 319 13 14 481 21 514 7.58e-57 198
Msa0574250 AT4G02050.2 28.221 489 313 10 6 471 15 488 9.71e-57 197
Msa0574250 AT4G02050.1 28.221 489 313 10 6 471 15 488 9.71e-57 197
Msa0574250 AT1G50310.1 26.819 481 310 11 14 467 21 486 2.31e-56 197
Msa0574250 AT5G23270.1 28.514 498 319 11 1 473 7 492 4.33e-56 196
Msa0574250 AT1G11260.1 26.938 516 326 12 13 489 18 521 3.08e-55 194
Msa0574250 AT1G75220.1 30.769 481 294 10 1 471 35 486 1.10e-51 183
Msa0574250 AT1G34580.1 27.869 488 308 12 9 467 15 487 1.77e-49 178
Msa0574250 AT3G05150.2 30.208 480 298 11 1 472 20 470 4.19e-49 176
Msa0574250 AT3G05150.1 30.335 478 296 12 1 470 20 468 8.94e-49 175
Msa0574250 AT3G05150.3 30.335 478 296 12 1 470 20 468 8.94e-49 175
Msa0574250 AT1G19450.1 30.063 479 293 13 7 471 37 487 8.94e-49 176
Msa0574250 AT5G26250.1 27.236 492 318 11 1 468 5 480 1.85e-48 175
Msa0574250 AT3G05160.1 27.766 479 298 9 2 469 11 452 8.25e-48 172
Msa0574250 AT4G21480.1 26.411 496 319 13 4 471 10 487 1.07e-47 173
Msa0574250 AT5G27350.1 27.686 484 314 8 6 481 19 474 1.20e-47 172
Msa0574250 AT1G34580.2 30.120 415 265 10 63 467 38 437 1.29e-47 172
Msa0574250 AT5G27360.1 27.984 486 310 9 6 481 23 478 4.16e-47 171
Msa0574250 AT5G27360.3 28.221 489 309 10 4 481 69 526 1.41e-46 170
Msa0574250 AT1G30220.1 33.828 337 214 5 15 348 25 355 1.91e-46 171
Msa0574250 AT1G30220.1 38.462 91 56 0 381 471 466 556 2.99e-13 72.8
Msa0574250 AT1G07340.1 27.801 482 303 11 13 467 18 481 4.58e-46 168
Msa0574250 AT1G08930.1 25.322 466 326 7 6 470 46 490 5.87e-46 168
Msa0574250 AT1G08930.2 25.322 466 326 7 6 470 46 490 5.87e-46 168
Msa0574250 AT3G05960.1 26.104 521 325 13 3 483 6 506 1.01e-45 167
Msa0574250 AT3G05165.3 26.819 481 298 10 2 468 20 460 1.46e-45 166
Msa0574250 AT3G05165.2 26.819 481 298 10 2 468 20 460 1.46e-45 166
Msa0574250 AT3G05165.1 26.819 481 298 10 2 468 20 460 1.46e-45 166
Msa0574250 AT1G05030.1 29.067 461 294 11 25 476 86 522 2.57e-45 167
Msa0574250 AT1G54730.2 27.660 470 310 9 4 468 18 462 6.25e-44 162
Msa0574250 AT1G77210.3 30.362 359 227 9 130 477 9 355 6.43e-44 159
Msa0574250 AT3G05160.3 28.176 433 269 8 48 469 2 403 9.76e-44 160
Msa0574250 AT3G05160.2 28.176 433 269 8 48 469 2 403 9.76e-44 160
Msa0574250 AT1G08900.1 27.941 476 310 10 4 473 12 460 2.34e-43 160
Msa0574250 AT1G08900.2 27.941 476 310 10 4 473 12 460 2.34e-43 160
Msa0574250 AT1G08900.3 27.731 476 303 11 4 473 12 452 3.03e-43 160
Msa0574250 AT2G35740.1 32.544 338 216 5 17 348 25 356 3.97e-43 162
Msa0574250 AT2G35740.1 36.667 90 57 0 382 471 470 559 4.26e-11 65.9
Msa0574250 AT3G05400.1 28.634 454 276 14 32 473 44 461 1.23e-42 158
Msa0574250 AT1G08900.5 28.182 440 284 9 40 473 5 418 1.42e-42 157
Msa0574250 AT1G50310.2 29.769 346 221 9 129 467 13 343 2.17e-42 155
Msa0574250 AT5G61520.1 26.639 488 314 11 13 471 19 491 2.99e-42 158
Msa0574250 AT2G48020.2 26.834 477 309 9 1 470 17 460 3.07e-42 157
Msa0574250 AT2G48020.1 26.834 477 309 9 1 470 17 460 3.07e-42 157
Msa0574250 AT3G05155.1 27.527 465 309 9 6 468 17 455 9.94e-42 155
Msa0574250 AT4G16480.2 32.938 337 216 5 17 348 26 357 1.02e-41 158
Msa0574250 AT4G16480.2 32.407 108 73 0 382 489 471 578 1.75e-11 67.0
Msa0574250 AT4G16480.3 32.938 337 216 5 17 348 26 357 1.02e-41 158
Msa0574250 AT4G16480.3 32.407 108 73 0 382 489 471 578 1.75e-11 67.0
Msa0574250 AT4G16480.1 32.938 337 216 5 17 348 26 357 1.02e-41 158
Msa0574250 AT4G16480.1 32.407 108 73 0 382 489 471 578 1.75e-11 67.0
Msa0574250 AT1G05030.2 29.087 416 264 10 68 476 79 470 2.16e-41 155
Msa0574250 AT5G18840.1 28.033 478 297 11 7 468 29 475 1.39e-40 153
Msa0574250 AT5G61520.2 28.329 413 277 9 63 471 46 443 2.70e-40 152
Msa0574250 AT1G08890.1 27.273 473 310 10 3 468 12 457 4.71e-40 151
Msa0574250 AT1G79820.2 30.310 452 286 10 23 468 59 487 5.59e-40 151
Msa0574250 AT1G79820.1 30.310 452 286 10 23 468 59 487 5.59e-40 151
Msa0574250 AT3G05165.4 27.251 422 254 9 2 409 20 402 8.18e-39 148
Msa0574250 AT3G05165.5 27.251 422 254 9 2 409 20 402 8.18e-39 148
Msa0574250 AT3G05165.6 27.251 422 254 9 2 409 20 402 1.90e-38 147
Msa0574250 AT5G17010.2 27.027 481 266 11 1 469 30 437 5.12e-38 145
Msa0574250 AT1G54730.3 26.932 427 283 8 4 425 18 420 5.42e-38 145
Msa0574250 AT1G67300.2 29.072 485 301 14 2 468 28 487 1.34e-37 145
Msa0574250 AT5G27360.2 28.535 396 243 9 96 481 9 374 2.87e-37 141
Msa0574250 AT5G27360.5 28.535 396 243 9 96 481 9 374 2.87e-37 141
Msa0574250 AT3G05400.2 28.140 430 248 14 74 473 43 441 3.46e-37 143
Msa0574250 AT4G04750.1 26.237 465 305 11 26 480 44 480 6.38e-37 143
Msa0574250 AT4G04750.2 26.237 465 305 11 26 480 44 480 6.38e-37 143
Msa0574250 AT1G67300.1 29.072 485 300 15 2 468 28 486 1.19e-36 142
Msa0574250 AT1G67300.3 29.072 485 300 15 2 468 28 486 1.19e-36 142
Msa0574250 AT4G04750.3 26.237 465 305 11 26 480 88 524 1.32e-36 142
Msa0574250 AT4G04760.1 27.515 487 294 16 15 480 28 476 2.53e-36 141
Msa0574250 AT4G04760.3 27.974 454 268 16 48 480 2 417 1.18e-35 138
Msa0574250 AT1G79820.4 30.653 398 247 10 23 414 59 433 5.62e-35 137
Msa0574250 AT1G54730.5 25.319 470 300 9 4 468 18 441 6.84e-35 136
Msa0574250 AT1G08900.4 27.336 428 279 9 4 425 12 413 8.21e-34 133
Msa0574250 AT4G04760.2 26.598 485 298 16 15 480 28 473 1.05e-33 134
Msa0574250 AT1G67300.6 28.571 427 269 13 2 414 28 432 1.46e-33 132
Msa0574250 AT1G67300.7 28.571 427 269 13 2 414 28 432 1.46e-33 132
Msa0574250 AT1G08920.1 27.176 471 311 12 6 469 18 463 2.82e-33 132
Msa0574250 AT5G27360.4 26.988 415 262 9 4 407 21 405 2.97e-33 131
Msa0574250 AT1G08920.2 26.987 478 310 12 6 469 18 470 4.28e-33 132
Msa0574250 AT1G54730.9 26.566 399 264 8 4 397 18 392 9.95e-33 130
Msa0574250 AT1G54730.7 26.566 399 264 8 4 397 18 392 9.95e-33 130
Msa0574250 AT1G67300.4 29.384 422 254 15 2 405 28 423 1.60e-32 129
Msa0574250 AT1G67300.5 29.384 422 254 15 2 405 28 423 1.60e-32 129
Msa0574250 AT1G54730.4 24.590 427 272 8 4 425 18 399 3.79e-29 119
Msa0574250 AT3G20460.1 23.899 477 319 10 3 468 40 483 7.60e-29 120
Msa0574250 AT3G05155.2 26.946 334 220 6 6 339 17 326 1.97e-28 115
Msa0574250 AT1G54730.11 25.893 336 230 6 4 339 18 334 3.55e-28 115
Msa0574250 AT2G48020.4 24.566 346 236 6 1 346 17 337 2.46e-27 114
Msa0574250 AT3G51490.2 30.242 248 160 6 16 252 2 247 2.79e-27 116
Msa0574250 AT3G51490.2 28.333 240 146 7 243 471 496 720 3.90e-13 72.8
Msa0574250 AT3G51490.1 30.242 248 160 6 16 252 2 247 3.27e-27 116
Msa0574250 AT1G08920.3 26.179 424 288 9 6 425 18 420 4.14e-27 114
Msa0574250 AT2G48020.3 24.571 350 239 6 1 350 17 341 9.44e-27 111
Msa0574250 AT1G20840.2 32.353 204 132 3 20 220 6 206 1.23e-26 114
Msa0574250 AT1G20840.2 30.172 232 139 9 253 471 498 719 5.26e-11 65.9
Msa0574250 AT1G20840.1 32.353 204 132 3 20 220 6 206 1.23e-26 114
Msa0574250 AT1G20840.1 30.172 232 139 9 253 471 498 719 5.26e-11 65.9
Msa0574250 AT1G54730.10 25.305 328 225 7 4 331 18 325 1.58e-24 104
Msa0574250 AT1G54730.6 25.305 328 225 7 4 331 18 325 1.58e-24 104
Msa0574250 AT1G54730.8 24.060 399 253 8 4 397 18 371 5.76e-24 104
Msa0574250 AT4G35300.4 32.653 196 126 4 29 220 15 208 3.43e-23 104
Msa0574250 AT4G35300.4 27.193 228 151 4 253 471 505 726 3.87e-13 72.8
Msa0574250 AT4G35300.8 32.653 196 126 4 29 220 15 208 3.43e-23 104
Msa0574250 AT4G35300.8 27.193 228 151 4 253 471 505 726 3.87e-13 72.8
Msa0574250 AT4G35300.6 32.653 196 126 4 29 220 15 208 3.43e-23 104
Msa0574250 AT4G35300.6 27.193 228 151 4 253 471 505 726 3.87e-13 72.8
Msa0574250 AT4G35300.11 32.653 196 126 4 29 220 15 208 3.43e-23 104
Msa0574250 AT4G35300.11 27.193 228 151 4 253 471 505 726 3.87e-13 72.8
Msa0574250 AT4G35300.1 32.653 196 126 4 29 220 15 208 3.43e-23 104
Msa0574250 AT4G35300.1 27.193 228 151 4 253 471 505 726 3.87e-13 72.8
Msa0574250 AT4G35300.10 32.653 196 126 4 29 220 15 208 3.43e-23 104
Msa0574250 AT4G35300.10 27.193 228 151 4 253 471 505 726 3.87e-13 72.8
Msa0574250 AT4G35300.7 32.653 196 126 4 29 220 15 208 3.43e-23 104
Msa0574250 AT4G35300.7 27.193 228 151 4 253 471 505 726 3.87e-13 72.8
Msa0574250 AT4G35300.9 32.653 196 126 4 29 220 15 208 3.80e-23 103
Msa0574250 AT4G35300.9 27.193 228 151 4 253 471 495 716 4.08e-13 72.4
Msa0574250 AT4G35300.2 32.653 196 126 4 29 220 15 208 3.80e-23 103
Msa0574250 AT4G35300.2 27.193 228 151 4 253 471 495 716 4.08e-13 72.4
Msa0574250 AT4G35300.3 32.653 196 126 4 29 220 15 208 3.80e-23 103
Msa0574250 AT4G35300.3 27.193 228 151 4 253 471 495 716 4.08e-13 72.4
Msa0574250 AT3G51490.3 30.645 186 120 4 75 252 13 197 1.36e-22 102
Msa0574250 AT3G51490.3 28.333 240 146 7 243 471 446 670 4.72e-13 72.4
Msa0574250 AT1G79820.3 33.831 201 127 3 23 220 59 256 1.00e-20 95.5
Msa0574250 AT4G35300.5 26.695 236 158 4 245 471 300 529 5.50e-13 71.6

Find 121 sgRNAs with CRISPR-Local

Find 362 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCGATTTATTTGGATAAATT+TGG 0.096076 4_1:+77595535 Msa0574250:CDS
CTTTGTGTTGGCAGGAATTT+TGG 0.167779 4_1:+77595876 Msa0574250:CDS
CAGAGCATGCATGGTTTCTT+TGG 0.188254 4_1:+77594066 Msa0574250:five_prime_UTR
ATTCGGAGTTAATGTGATTA+TGG 0.219057 4_1:+77595480 Msa0574250:CDS
GCAGCAGCCACATTCTTAAT+TGG 0.236384 4_1:+77594833 Msa0574250:CDS
GAGAATCATGCTTGCGATTT+CGG 0.251888 4_1:+77595090 Msa0574250:CDS
CGACCCATGGGCCTGGAAAT+TGG 0.255935 4_1:+77595284 Msa0574250:CDS
AGCCTTAGTTCAGCTTCTTC+TGG 0.257644 4_1:-77595232 None:intergenic
TTGGGCTTGGGCCTATTACT+TGG 0.257763 4_1:+77595713 Msa0574250:CDS
AGAAATCAACATACGCTTAA+TGG 0.268855 4_1:-77595353 None:intergenic
AGGGTTCGGGGAAGCCTGTT+TGG 0.273220 4_1:+77595638 Msa0574250:CDS
ATTCTCCAACCAAGGTTTAT+AGG 0.276627 4_1:-77595073 None:intergenic
AACAAACGACCTATAATTTC+AGG 0.278138 4_1:+77594117 Msa0574250:five_prime_UTR
CGTATGTTGATTTCTGCTAT+TGG 0.288959 4_1:+77595361 Msa0574250:CDS
CGATTTATTTGGATAAATTT+GGG 0.299699 4_1:+77595536 Msa0574250:CDS
ATTTCGAAGAAGATAACTTT+TGG 0.302177 4_1:+77595844 Msa0574250:CDS
TTCCGGTGCTTGTAATCTAA+TGG 0.303488 4_1:+77596359 Msa0574250:CDS
TTCTTCTAATGTCTTGCCTT+TGG 0.309108 4_1:-77595938 None:intergenic
GTCGTTGTTTGGGCTTGGTT+TGG 0.311988 4_1:+77595600 Msa0574250:CDS
AATGTCTTGCCTTTGGTCTC+TGG 0.312037 4_1:-77595931 None:intergenic
CCTTGACCATTCCAATTTCC+AGG 0.320701 4_1:-77595295 None:intergenic
TAACAATAGTAATGAGAAAC+AGG 0.322736 4_1:+77595999 Msa0574250:CDS
CACGATAAGGGTGTGGAAAA+AGG 0.325380 4_1:+77596027 Msa0574250:CDS
GGTATGGCTGTGTCGTTGTT+TGG 0.329531 4_1:+77595589 Msa0574250:CDS
GTATGTTGATTTCTGCTATT+GGG 0.330958 4_1:+77595362 Msa0574250:CDS
TTCGGAGTTAATGTGATTAT+GGG 0.336573 4_1:+77595481 Msa0574250:CDS
CATGATTTCGCCTCTCTATA+CGG 0.336929 4_1:+77594940 Msa0574250:CDS
GTGATCAAACCTGAAATTAT+AGG 0.338776 4_1:-77594126 None:intergenic
ACAAGCCAATGAGGAGATTC+AGG 0.340207 4_1:-77595154 None:intergenic
ATTGGAATGGTCAAGGTGTT+TGG 0.342294 4_1:+77595302 Msa0574250:CDS
GGGTTCGGGGAAGCCTGTTT+GGG 0.343937 4_1:+77595639 Msa0574250:CDS
AGGCAAGACATTAGAAGAAA+TGG 0.351728 4_1:+77595942 Msa0574250:CDS
CATACGCTTAATGGGCTTGC+TGG 0.352250 4_1:-77595344 None:intergenic
AGAGGCTAGTGATCCGATTA+AGG 0.360619 4_1:-77594765 None:intergenic
GACGAATAAACCCAAGTAAT+AGG 0.376349 4_1:-77595724 None:intergenic
CTCAACGTGTGTTCCTTAAT+CGG 0.385617 4_1:+77594752 Msa0574250:CDS
ATCACTCTTGGAATTCTCAT+TGG 0.388963 4_1:+77595019 Msa0574250:CDS
AATTTCTTCATGCAAGCATC+TGG 0.394503 4_1:+77595388 Msa0574250:CDS
GTATGGCTGTGTCGTTGTTT+GGG 0.398304 4_1:+77595590 Msa0574250:CDS
GAAATCAACATACGCTTAAT+GGG 0.401834 4_1:-77595352 None:intergenic
TCGTTGTTTGGGCTTGGTTT+GGG 0.403167 4_1:+77595601 Msa0574250:CDS
GGAATGTTCTTTGTGTTGGC+AGG 0.406998 4_1:+77595868 Msa0574250:CDS
TGGGCTTGGGCCTATTACTT+GGG 0.410541 4_1:+77595714 Msa0574250:CDS
CCAAGAGTGATGAATACTTC+AGG 0.413010 4_1:-77595007 None:intergenic
ACGAATTCAACAAGAAATAC+TGG 0.415231 4_1:+77594721 Msa0574250:CDS
CCTTGAGCTCTAAGCCTCAT+AGG 0.421634 4_1:-77595757 None:intergenic
CCTGAAGTATTCATCACTCT+TGG 0.429913 4_1:+77595007 Msa0574250:CDS
TTATGCCTGAATCTCCTCAT+TGG 0.433079 4_1:+77595149 Msa0574250:CDS
GCTGTGTCGTTGTTTGGGCT+TGG 0.434203 4_1:+77595595 Msa0574250:CDS
CCCTCATATGACTCATGCTT+CGG 0.436869 4_1:+77596309 Msa0574250:CDS
AATGATTCGACCCATGGGCC+TGG 0.450651 4_1:+77595277 Msa0574250:CDS
GAGGAAACCACGTGTGGTGG+TGG 0.452634 4_1:-77594975 None:intergenic
TTCTACCAGTTAAGATGAAA+AGG 0.454141 4_1:-77594886 None:intergenic
GGAAACCACGTGTGGTGGTG+GGG 0.460413 4_1:-77594973 None:intergenic
ACCGAAGCATGAGTCATATG+AGG 0.463108 4_1:-77596310 None:intergenic
AAGTGAAAGAAGAACACGTT+TGG 0.463421 4_1:-77595200 None:intergenic
GTATTGCAATTTCAGTGAAT+CGG 0.469528 4_1:+77595785 Msa0574250:CDS
TTAACTGGTAGAATGATTGC+CGG 0.471849 4_1:+77594896 Msa0574250:CDS
TTTAAAGCTGCTGGGATTCA+CGG 0.473398 4_1:+77595445 Msa0574250:CDS
GGCAAAACCTCCGACACAAT+CGG 0.474469 4_1:+77594788 Msa0574250:CDS
CACACCACAACAGCCCAAAC+AGG 0.478548 4_1:-77595652 None:intergenic
ATCTTCCTATAAACCTTGGT+TGG 0.480684 4_1:+77595068 Msa0574250:CDS
GTGACCGTAGCCGAGGAGAA+TGG 0.490976 4_1:-77594525 None:intergenic
TGCATAACCAACGCCAATGC+CGG 0.491265 4_1:-77594915 None:intergenic
CATTCCAATTTCCAGGCCCA+TGG 0.493226 4_1:-77595288 None:intergenic
GAAACAGGGTAGTCACGATA+AGG 0.493974 4_1:+77596014 Msa0574250:CDS
GAAACCACGTGTGGTGGTGG+GGG 0.497288 4_1:-77594972 None:intergenic
GGTAGAATGATTGCCGGCAT+TGG 0.499470 4_1:+77594902 Msa0574250:CDS
TATTACTTGGGTTTATTCGT+CGG 0.500169 4_1:+77595726 Msa0574250:CDS
CCTATGAGGCTTAGAGCTCA+AGG 0.502005 4_1:+77595757 Msa0574250:CDS
GTTGATTGGGTCGTTTGGTA+TGG 0.503246 4_1:+77595573 Msa0574250:CDS
GAAGCCTGTTTGGGCTGTTG+TGG 0.508508 4_1:+77595648 Msa0574250:CDS
CATACAAACATAAAAGAAAC+CGG 0.512615 4_1:-77595908 None:intergenic
ATACGCTTAATGGGCTTGCT+GGG 0.514483 4_1:-77595343 None:intergenic
AACGACCCAATCAACAAAAG+AGG 0.515727 4_1:-77595565 None:intergenic
CTCCAGAAGAAGCTGAACTA+AGG 0.515892 4_1:+77595230 Msa0574250:CDS
AGGAAACCACGTGTGGTGGT+GGG 0.518887 4_1:-77594974 None:intergenic
AACCATTAGATTACAAGCAC+CGG 0.519177 4_1:-77596361 None:intergenic
TCAGTGAATCGGTTGGTAAG+TGG 0.520141 4_1:+77595796 Msa0574250:CDS
CCGTGGTTGCAGAGCATGCA+TGG 0.523667 4_1:+77594057 Msa0574250:five_prime_UTR
ATGATTGCCGGCATTGGCGT+TGG 0.525057 4_1:+77594908 Msa0574250:CDS
TGCAATTTCAGTGAATCGGT+TGG 0.526155 4_1:+77595789 Msa0574250:CDS
CCATGCATGCTCTGCAACCA+CGG 0.526360 4_1:-77594057 None:intergenic
AAACAGGGTAGTCACGATAA+GGG 0.529928 4_1:+77596015 Msa0574250:CDS
AACTCCATTCTCCTCGGCTA+CGG 0.533061 4_1:+77594521 Msa0574250:CDS
ACAGATCTTCCTATAAACCT+TGG 0.534847 4_1:+77595064 Msa0574250:CDS
TTCCGGTGAGTAATATATAA+CGG 0.540717 4_1:-77595419 None:intergenic
CCAAAAGCAATTAAAATCGC+AGG 0.554301 4_1:-77595118 None:intergenic
CAAGCATGATTCTCCAACCA+AGG 0.566441 4_1:-77595081 None:intergenic
ATTCCAATTTCCAGGCCCAT+GGG 0.576951 4_1:-77595287 None:intergenic
TTAATCGGATCACTAGCCTC+TGG 0.576984 4_1:+77594767 Msa0574250:CDS
ATTTGGATAAATTTGGGAGG+CGG 0.578238 4_1:+77595542 Msa0574250:CDS
GCAGATATTGGAGTTATGAG+TGG 0.580027 4_1:+77594662 Msa0574250:intron
CCTTTGAAAACAAGCCAATG+AGG 0.580197 4_1:-77595163 None:intergenic
ATGCTCTGCAACCACGGTCA+AGG 0.580764 4_1:-77594051 None:intergenic
GCGTCGTCCGATTGTGTCGG+AGG 0.585672 4_1:-77594795 None:intergenic
GGCTGTTGTGGTGTGCATTG+TGG 0.586509 4_1:+77595660 Msa0574250:CDS
CATGGGCCTGGAAATTGGAA+TGG 0.589396 4_1:+77595289 Msa0574250:CDS
GATAGCTCCAATTAAGAATG+TGG 0.593155 4_1:-77594840 None:intergenic
GTAGCCGAGGAGAATGGAGT+TGG 0.596763 4_1:-77594519 None:intergenic
GGGTAGTCACGATAAGGGTG+TGG 0.598862 4_1:+77596020 Msa0574250:CDS
ACCAGTTAAGATGAAAAGGA+AGG 0.603097 4_1:-77594882 None:intergenic
TCAACCAACTCCATTCTCCT+CGG 0.608495 4_1:+77594515 Msa0574250:CDS
AGTGTGAGTGACCGTAGCCG+AGG 0.610877 4_1:-77594532 None:intergenic
TGCCGTTATATATTACTCAC+CGG 0.612747 4_1:+77595417 Msa0574250:CDS
GTTTGTATGCCAGAGACCAA+AGG 0.616705 4_1:+77595922 Msa0574250:CDS
CCTGGAAATTGGAATGGTCA+AGG 0.618100 4_1:+77595295 Msa0574250:CDS
GAGAGTTCTGCCGTATAGAG+AGG 0.619005 4_1:-77594950 None:intergenic
ATTCAACAAGAAATACTGGT+AGG 0.623074 4_1:+77594725 Msa0574250:CDS
CCGAAGCATGAGTCATATGA+GGG 0.626889 4_1:-77596309 None:intergenic
GTATCTGTTGATGCGAATTG+AGG 0.627690 4_1:-77594468 None:intergenic
CGATTAAGGAACACACGTTG+AGG 0.637851 4_1:-77594751 None:intergenic
GTAGCGTCGTCCGATTGTGT+CGG 0.643886 4_1:-77594798 None:intergenic
TTTATTTGGATAAATTTGGG+AGG 0.646571 4_1:+77595539 Msa0574250:CDS
ATACTTCAGGAAGCGAAGTG+AGG 0.648850 4_1:-77594994 None:intergenic
AGTGAGGAAACCACGTGTGG+TGG 0.676857 4_1:-77594978 None:intergenic
CGAAGTGAGGAAACCACGTG+TGG 0.678253 4_1:-77594981 None:intergenic
AATGGAAACTCTCTTCGTCG+AGG 0.684483 4_1:+77595960 Msa0574250:CDS
GAATCGGTTGGTAAGTGGAG+TGG 0.690356 4_1:+77595801 Msa0574250:CDS
AACAATAGTAATGAGAAACA+GGG 0.691089 4_1:+77596000 Msa0574250:CDS
TTGACGAGAAAAGAGCACAG+AGG 0.775973 4_1:-77594496 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTGTTTATATTAGTAAAG+TGG + chr4_1:77594207-77594226 Msa0574250:intron 15.0%
!!! ACCATCATAAATTATTTTAT+AGG + chr4_1:77596271-77596290 Msa0574250:intron 15.0%
!! ACCTATAAAATAATTTATGA+TGG - chr4_1:77596275-77596294 None:intergenic 15.0%
!!! TTTTGTTTATATTAGTAAAG+TGG + chr4_1:77594207-77594226 Msa0574250:intron 15.0%
!!! ACCATCATAAATTATTTTAT+AGG + chr4_1:77596271-77596290 Msa0574250:intron 15.0%
!! ACCTATAAAATAATTTATGA+TGG - chr4_1:77596275-77596294 None:intergenic 15.0%
!! TCAACTTATTGAATTTAACA+AGG + chr4_1:77594283-77594302 Msa0574250:intron 20.0%
!! ATTTATGAACATTAATAAGC+TGG - chr4_1:77594339-77594358 None:intergenic 20.0%
!! AAAGTCATAAATAGAAAGAT+GGG - chr4_1:77594608-77594627 None:intergenic 20.0%
!!! GAGTTTTTTTGTTTTTCTTT+CGG + chr4_1:77595513-77595532 Msa0574250:CDS 20.0%
!! CGATTTATTTGGATAAATTT+GGG + chr4_1:77595536-77595555 Msa0574250:CDS 20.0%
!! TCAACTTATTGAATTTAACA+AGG + chr4_1:77594283-77594302 Msa0574250:intron 20.0%
!! ATTTATGAACATTAATAAGC+TGG - chr4_1:77594339-77594358 None:intergenic 20.0%
!! AAAGTCATAAATAGAAAGAT+GGG - chr4_1:77594608-77594627 None:intergenic 20.0%
!!! GAGTTTTTTTGTTTTTCTTT+CGG + chr4_1:77595513-77595532 Msa0574250:CDS 20.0%
!! CGATTTATTTGGATAAATTT+GGG + chr4_1:77595536-77595555 Msa0574250:CDS 20.0%
! ACTTATTGAATTTAACAAGG+AGG + chr4_1:77594286-77594305 Msa0574250:intron 25.0%
! CAAAGTCATAAATAGAAAGA+TGG - chr4_1:77594609-77594628 None:intergenic 25.0%
! TTATAATGCATTGCAGATAT+TGG + chr4_1:77594650-77594669 Msa0574250:intron 25.0%
!!! TTTGGAAAGAGCTTTTTTTA+AGG + chr4_1:77595320-77595339 Msa0574250:CDS 25.0%
! GCGATTTATTTGGATAAATT+TGG + chr4_1:77595535-77595554 Msa0574250:CDS 25.0%
! TTTATTTGGATAAATTTGGG+AGG + chr4_1:77595539-77595558 Msa0574250:CDS 25.0%
!! ATGTTTCGTTCTTTTCTATT+GGG + chr4_1:77595695-77595714 Msa0574250:CDS 25.0%
!! ATTTCGAAGAAGATAACTTT+TGG + chr4_1:77595844-77595863 Msa0574250:CDS 25.0%
!! TTTCGAAGAAGATAACTTTT+GGG + chr4_1:77595845-77595864 Msa0574250:CDS 25.0%
! CATACAAACATAAAAGAAAC+CGG - chr4_1:77595911-77595930 None:intergenic 25.0%
! TAACAATAGTAATGAGAAAC+AGG + chr4_1:77595999-77596018 Msa0574250:CDS 25.0%
! AACAATAGTAATGAGAAACA+GGG + chr4_1:77596000-77596019 Msa0574250:CDS 25.0%
!!! TCTACATCGTTTTTTTTTTC+CGG + chr4_1:77596342-77596361 Msa0574250:CDS 25.0%
! ACTTATTGAATTTAACAAGG+AGG + chr4_1:77594286-77594305 Msa0574250:intron 25.0%
! CAAAGTCATAAATAGAAAGA+TGG - chr4_1:77594609-77594628 None:intergenic 25.0%
! TTATAATGCATTGCAGATAT+TGG + chr4_1:77594650-77594669 Msa0574250:intron 25.0%
!!! TTTGGAAAGAGCTTTTTTTA+AGG + chr4_1:77595320-77595339 Msa0574250:CDS 25.0%
! GCGATTTATTTGGATAAATT+TGG + chr4_1:77595535-77595554 Msa0574250:CDS 25.0%
! TTTATTTGGATAAATTTGGG+AGG + chr4_1:77595539-77595558 Msa0574250:CDS 25.0%
!! ATGTTTCGTTCTTTTCTATT+GGG + chr4_1:77595695-77595714 Msa0574250:CDS 25.0%
!! ATTTCGAAGAAGATAACTTT+TGG + chr4_1:77595844-77595863 Msa0574250:CDS 25.0%
!! TTTCGAAGAAGATAACTTTT+GGG + chr4_1:77595845-77595864 Msa0574250:CDS 25.0%
! CATACAAACATAAAAGAAAC+CGG - chr4_1:77595911-77595930 None:intergenic 25.0%
! TAACAATAGTAATGAGAAAC+AGG + chr4_1:77595999-77596018 Msa0574250:CDS 25.0%
! AACAATAGTAATGAGAAACA+GGG + chr4_1:77596000-77596019 Msa0574250:CDS 25.0%
!!! TCTACATCGTTTTTTTTTTC+CGG + chr4_1:77596342-77596361 Msa0574250:CDS 25.0%
AACAAACGACCTATAATTTC+AGG + chr4_1:77594117-77594136 Msa0574250:five_prime_UTR 30.0%
GTGATCAAACCTGAAATTAT+AGG - chr4_1:77594129-77594148 None:intergenic 30.0%
ACGAATTCAACAAGAAATAC+TGG + chr4_1:77594721-77594740 Msa0574250:CDS 30.0%
ATTCAACAAGAAATACTGGT+AGG + chr4_1:77594725-77594744 Msa0574250:CDS 30.0%
TTCTACCAGTTAAGATGAAA+AGG - chr4_1:77594889-77594908 None:intergenic 30.0%
GAAATCAACATACGCTTAAT+GGG - chr4_1:77595355-77595374 None:intergenic 30.0%
AGAAATCAACATACGCTTAA+TGG - chr4_1:77595356-77595375 None:intergenic 30.0%
!! GTATGTTGATTTCTGCTATT+GGG + chr4_1:77595362-77595381 Msa0574250:CDS 30.0%
TTCCGGTGAGTAATATATAA+CGG - chr4_1:77595422-77595441 None:intergenic 30.0%
ATTCGGAGTTAATGTGATTA+TGG + chr4_1:77595480-77595499 Msa0574250:CDS 30.0%
TTCGGAGTTAATGTGATTAT+GGG + chr4_1:77595481-77595500 Msa0574250:CDS 30.0%
! TTTTCTTTCGGCGATTTATT+TGG + chr4_1:77595525-77595544 Msa0574250:CDS 30.0%
! GATGTTTCGTTCTTTTCTAT+TGG + chr4_1:77595694-77595713 Msa0574250:CDS 30.0%
TATTACTTGGGTTTATTCGT+CGG + chr4_1:77595726-77595745 Msa0574250:CDS 30.0%
GTATTGCAATTTCAGTGAAT+CGG + chr4_1:77595785-77595804 Msa0574250:CDS 30.0%
! TTCGAAGAAGATAACTTTTG+GGG + chr4_1:77595846-77595865 Msa0574250:CDS 30.0%
TTCAATCCACAAATACAGTT+TGG - chr4_1:77596191-77596210 None:intergenic 30.0%
AAACTACCAATGTTATGAGA+AGG + chr4_1:77596232-77596251 Msa0574250:intron 30.0%
AACAAACGACCTATAATTTC+AGG + chr4_1:77594117-77594136 Msa0574250:five_prime_UTR 30.0%
GTGATCAAACCTGAAATTAT+AGG - chr4_1:77594129-77594148 None:intergenic 30.0%
ACGAATTCAACAAGAAATAC+TGG + chr4_1:77594721-77594740 Msa0574250:CDS 30.0%
ATTCAACAAGAAATACTGGT+AGG + chr4_1:77594725-77594744 Msa0574250:CDS 30.0%
TTCTACCAGTTAAGATGAAA+AGG - chr4_1:77594889-77594908 None:intergenic 30.0%
GAAATCAACATACGCTTAAT+GGG - chr4_1:77595355-77595374 None:intergenic 30.0%
AGAAATCAACATACGCTTAA+TGG - chr4_1:77595356-77595375 None:intergenic 30.0%
!! GTATGTTGATTTCTGCTATT+GGG + chr4_1:77595362-77595381 Msa0574250:CDS 30.0%
TTCCGGTGAGTAATATATAA+CGG - chr4_1:77595422-77595441 None:intergenic 30.0%
ATTCGGAGTTAATGTGATTA+TGG + chr4_1:77595480-77595499 Msa0574250:CDS 30.0%
TTCGGAGTTAATGTGATTAT+GGG + chr4_1:77595481-77595500 Msa0574250:CDS 30.0%
! TTTTCTTTCGGCGATTTATT+TGG + chr4_1:77595525-77595544 Msa0574250:CDS 30.0%
! GATGTTTCGTTCTTTTCTAT+TGG + chr4_1:77595694-77595713 Msa0574250:CDS 30.0%
TATTACTTGGGTTTATTCGT+CGG + chr4_1:77595726-77595745 Msa0574250:CDS 30.0%
GTATTGCAATTTCAGTGAAT+CGG + chr4_1:77595785-77595804 Msa0574250:CDS 30.0%
! TTCGAAGAAGATAACTTTTG+GGG + chr4_1:77595846-77595865 Msa0574250:CDS 30.0%
TTCAATCCACAAATACAGTT+TGG - chr4_1:77596191-77596210 None:intergenic 30.0%
AAACTACCAATGTTATGAGA+AGG + chr4_1:77596232-77596251 Msa0574250:intron 30.0%
! TGAGATACAGTTACTGGTTA+TGG - chr4_1:77594250-77594269 None:intergenic 35.0%
GATAGCTCCAATTAAGAATG+TGG - chr4_1:77594843-77594862 None:intergenic 35.0%
! TCCTTCCTTTTCATCTTAAC+TGG + chr4_1:77594881-77594900 Msa0574250:CDS 35.0%
ACCAGTTAAGATGAAAAGGA+AGG - chr4_1:77594885-77594904 None:intergenic 35.0%
TTAACTGGTAGAATGATTGC+CGG + chr4_1:77594896-77594915 Msa0574250:CDS 35.0%
ATCACTCTTGGAATTCTCAT+TGG + chr4_1:77595019-77595038 Msa0574250:CDS 35.0%
ACAGATCTTCCTATAAACCT+TGG + chr4_1:77595064-77595083 Msa0574250:CDS 35.0%
ATCTTCCTATAAACCTTGGT+TGG + chr4_1:77595068-77595087 Msa0574250:CDS 35.0%
ATTCTCCAACCAAGGTTTAT+AGG - chr4_1:77595076-77595095 None:intergenic 35.0%
CCAAAAGCAATTAAAATCGC+AGG - chr4_1:77595121-77595140 None:intergenic 35.0%
!!! CCTGCGATTTTAATTGCTTT+TGG + chr4_1:77595118-77595137 Msa0574250:CDS 35.0%
AAGTGAAAGAAGAACACGTT+TGG - chr4_1:77595203-77595222 None:intergenic 35.0%
AACAAAAATGATTCGACCCA+TGG + chr4_1:77595271-77595290 Msa0574250:CDS 35.0%
ACAAAAATGATTCGACCCAT+GGG + chr4_1:77595272-77595291 Msa0574250:CDS 35.0%
!! CGTATGTTGATTTCTGCTAT+TGG + chr4_1:77595361-77595380 Msa0574250:CDS 35.0%
AATTTCTTCATGCAAGCATC+TGG + chr4_1:77595388-77595407 Msa0574250:CDS 35.0%
TGCCGTTATATATTACTCAC+CGG + chr4_1:77595417-77595436 Msa0574250:CDS 35.0%
CACGGTAAGAAAAAGCTATT+CGG + chr4_1:77595463-77595482 Msa0574250:CDS 35.0%
ATTTGGATAAATTTGGGAGG+CGG + chr4_1:77595542-77595561 Msa0574250:CDS 35.0%
TTTGGGCTCAAAAATTCTAG+AGG + chr4_1:77595618-77595637 Msa0574250:CDS 35.0%
TTGGGCTCAAAAATTCTAGA+GGG + chr4_1:77595619-77595638 Msa0574250:CDS 35.0%
! CTCAAAAATTCTAGAGGGTT+CGG + chr4_1:77595624-77595643 Msa0574250:CDS 35.0%
! TCAAAAATTCTAGAGGGTTC+GGG + chr4_1:77595625-77595644 Msa0574250:CDS 35.0%
GACGAATAAACCCAAGTAAT+AGG - chr4_1:77595727-77595746 None:intergenic 35.0%
! TCGAAGAAGATAACTTTTGG+GGG + chr4_1:77595847-77595866 Msa0574250:CDS 35.0%
TTCTTCTAATGTCTTGCCTT+TGG - chr4_1:77595941-77595960 None:intergenic 35.0%
AGGCAAGACATTAGAAGAAA+TGG + chr4_1:77595942-77595961 Msa0574250:CDS 35.0%
TTTAGGGGAAGAAAATGTGT+TGG + chr4_1:77596055-77596074 Msa0574250:intron 35.0%
ATACCACCTTCTCATAACAT+TGG - chr4_1:77596241-77596260 None:intergenic 35.0%
! TGAGATACAGTTACTGGTTA+TGG - chr4_1:77594250-77594269 None:intergenic 35.0%
GATAGCTCCAATTAAGAATG+TGG - chr4_1:77594843-77594862 None:intergenic 35.0%
! TCCTTCCTTTTCATCTTAAC+TGG + chr4_1:77594881-77594900 Msa0574250:CDS 35.0%
ACCAGTTAAGATGAAAAGGA+AGG - chr4_1:77594885-77594904 None:intergenic 35.0%
TTAACTGGTAGAATGATTGC+CGG + chr4_1:77594896-77594915 Msa0574250:CDS 35.0%
ATCACTCTTGGAATTCTCAT+TGG + chr4_1:77595019-77595038 Msa0574250:CDS 35.0%
ACAGATCTTCCTATAAACCT+TGG + chr4_1:77595064-77595083 Msa0574250:CDS 35.0%
ATCTTCCTATAAACCTTGGT+TGG + chr4_1:77595068-77595087 Msa0574250:CDS 35.0%
ATTCTCCAACCAAGGTTTAT+AGG - chr4_1:77595076-77595095 None:intergenic 35.0%
CCAAAAGCAATTAAAATCGC+AGG - chr4_1:77595121-77595140 None:intergenic 35.0%
!!! CCTGCGATTTTAATTGCTTT+TGG + chr4_1:77595118-77595137 Msa0574250:CDS 35.0%
AAGTGAAAGAAGAACACGTT+TGG - chr4_1:77595203-77595222 None:intergenic 35.0%
AACAAAAATGATTCGACCCA+TGG + chr4_1:77595271-77595290 Msa0574250:CDS 35.0%
ACAAAAATGATTCGACCCAT+GGG + chr4_1:77595272-77595291 Msa0574250:CDS 35.0%
!! CGTATGTTGATTTCTGCTAT+TGG + chr4_1:77595361-77595380 Msa0574250:CDS 35.0%
AATTTCTTCATGCAAGCATC+TGG + chr4_1:77595388-77595407 Msa0574250:CDS 35.0%
TGCCGTTATATATTACTCAC+CGG + chr4_1:77595417-77595436 Msa0574250:CDS 35.0%
CACGGTAAGAAAAAGCTATT+CGG + chr4_1:77595463-77595482 Msa0574250:CDS 35.0%
ATTTGGATAAATTTGGGAGG+CGG + chr4_1:77595542-77595561 Msa0574250:CDS 35.0%
TTTGGGCTCAAAAATTCTAG+AGG + chr4_1:77595618-77595637 Msa0574250:CDS 35.0%
TTGGGCTCAAAAATTCTAGA+GGG + chr4_1:77595619-77595638 Msa0574250:CDS 35.0%
! CTCAAAAATTCTAGAGGGTT+CGG + chr4_1:77595624-77595643 Msa0574250:CDS 35.0%
! TCAAAAATTCTAGAGGGTTC+GGG + chr4_1:77595625-77595644 Msa0574250:CDS 35.0%
GACGAATAAACCCAAGTAAT+AGG - chr4_1:77595727-77595746 None:intergenic 35.0%
! TCGAAGAAGATAACTTTTGG+GGG + chr4_1:77595847-77595866 Msa0574250:CDS 35.0%
TTCTTCTAATGTCTTGCCTT+TGG - chr4_1:77595941-77595960 None:intergenic 35.0%
AGGCAAGACATTAGAAGAAA+TGG + chr4_1:77595942-77595961 Msa0574250:CDS 35.0%
TTTAGGGGAAGAAAATGTGT+TGG + chr4_1:77596055-77596074 Msa0574250:intron 35.0%
ATACCACCTTCTCATAACAT+TGG - chr4_1:77596241-77596260 None:intergenic 35.0%
GACTTGTGAGATACAGTTAC+TGG - chr4_1:77594256-77594275 None:intergenic 40.0%
TTCGACCACTCTATCTTCTT+TGG + chr4_1:77594310-77594329 Msa0574250:intron 40.0%
GGATTCCAAAGAAGATAGAG+TGG - chr4_1:77594318-77594337 None:intergenic 40.0%
GTATCTGTTGATGCGAATTG+AGG - chr4_1:77594471-77594490 None:intergenic 40.0%
GCAGATATTGGAGTTATGAG+TGG + chr4_1:77594662-77594681 Msa0574250:intron 40.0%
CTCAACGTGTGTTCCTTAAT+CGG + chr4_1:77594752-77594771 Msa0574250:CDS 40.0%
CATGATTTCGCCTCTCTATA+CGG + chr4_1:77594940-77594959 Msa0574250:CDS 40.0%
CCAAGAGTGATGAATACTTC+AGG - chr4_1:77595010-77595029 None:intergenic 40.0%
! CCTGAAGTATTCATCACTCT+TGG + chr4_1:77595007-77595026 Msa0574250:CDS 40.0%
GAGAATCATGCTTGCGATTT+CGG + chr4_1:77595090-77595109 Msa0574250:CDS 40.0%
TTATGCCTGAATCTCCTCAT+TGG + chr4_1:77595149-77595168 Msa0574250:CDS 40.0%
! CCTTTGAAAACAAGCCAATG+AGG - chr4_1:77595166-77595185 None:intergenic 40.0%
!!! CCTCATTGGCTTGTTTTCAA+AGG + chr4_1:77595163-77595182 Msa0574250:CDS 40.0%
! ATTGGAATGGTCAAGGTGTT+TGG + chr4_1:77595302-77595321 Msa0574250:CDS 40.0%
!! CCAGCAGCTTTAAAAACTTC+CGG - chr4_1:77595439-77595458 None:intergenic 40.0%
!!! CGGAAGTTTTTAAAGCTGCT+GGG + chr4_1:77595437-77595456 Msa0574250:CDS 40.0%
! TTTAAAGCTGCTGGGATTCA+CGG + chr4_1:77595445-77595464 Msa0574250:CDS 40.0%
AACGACCCAATCAACAAAAG+AGG - chr4_1:77595568-77595587 None:intergenic 40.0%
!! CTTTTGTTGATTGGGTCGTT+TGG + chr4_1:77595568-77595587 Msa0574250:CDS 40.0%
! CAAAAATTCTAGAGGGTTCG+GGG + chr4_1:77595626-77595645 Msa0574250:CDS 40.0%
! TCGTTCTTTTCTATTGGGCT+TGG + chr4_1:77595700-77595719 Msa0574250:CDS 40.0%
! CGTTCTTTTCTATTGGGCTT+GGG + chr4_1:77595701-77595720 Msa0574250:CDS 40.0%
TGCAATTTCAGTGAATCGGT+TGG + chr4_1:77595789-77595808 Msa0574250:CDS 40.0%
!! CTTTGTGTTGGCAGGAATTT+TGG + chr4_1:77595876-77595895 Msa0574250:CDS 40.0%
AAACAGGGTAGTCACGATAA+GGG + chr4_1:77596015-77596034 Msa0574250:CDS 40.0%
!! TGTGGAAAAAGGAGGTGTTT+AGG + chr4_1:77596038-77596057 Msa0574250:intron 40.0%
!! GTGGAAAAAGGAGGTGTTTA+GGG + chr4_1:77596039-77596058 Msa0574250:intron 40.0%
!! TGGAAAAAGGAGGTGTTTAG+GGG + chr4_1:77596040-77596059 Msa0574250:intron 40.0%
GCTAGACCAAACTGTATTTG+TGG + chr4_1:77596182-77596201 Msa0574250:intron 40.0%
CTACCAATGTTATGAGAAGG+TGG + chr4_1:77596235-77596254 Msa0574250:intron 40.0%
GACTTGTGAGATACAGTTAC+TGG - chr4_1:77594256-77594275 None:intergenic 40.0%
TTCGACCACTCTATCTTCTT+TGG + chr4_1:77594310-77594329 Msa0574250:intron 40.0%
GGATTCCAAAGAAGATAGAG+TGG - chr4_1:77594318-77594337 None:intergenic 40.0%
GTATCTGTTGATGCGAATTG+AGG - chr4_1:77594471-77594490 None:intergenic 40.0%
GCAGATATTGGAGTTATGAG+TGG + chr4_1:77594662-77594681 Msa0574250:intron 40.0%
CTCAACGTGTGTTCCTTAAT+CGG + chr4_1:77594752-77594771 Msa0574250:CDS 40.0%
CATGATTTCGCCTCTCTATA+CGG + chr4_1:77594940-77594959 Msa0574250:CDS 40.0%
CCAAGAGTGATGAATACTTC+AGG - chr4_1:77595010-77595029 None:intergenic 40.0%
! CCTGAAGTATTCATCACTCT+TGG + chr4_1:77595007-77595026 Msa0574250:CDS 40.0%
GAGAATCATGCTTGCGATTT+CGG + chr4_1:77595090-77595109 Msa0574250:CDS 40.0%
TTATGCCTGAATCTCCTCAT+TGG + chr4_1:77595149-77595168 Msa0574250:CDS 40.0%
! CCTTTGAAAACAAGCCAATG+AGG - chr4_1:77595166-77595185 None:intergenic 40.0%
!!! CCTCATTGGCTTGTTTTCAA+AGG + chr4_1:77595163-77595182 Msa0574250:CDS 40.0%
! ATTGGAATGGTCAAGGTGTT+TGG + chr4_1:77595302-77595321 Msa0574250:CDS 40.0%
!! CCAGCAGCTTTAAAAACTTC+CGG - chr4_1:77595439-77595458 None:intergenic 40.0%
!!! CGGAAGTTTTTAAAGCTGCT+GGG + chr4_1:77595437-77595456 Msa0574250:CDS 40.0%
! TTTAAAGCTGCTGGGATTCA+CGG + chr4_1:77595445-77595464 Msa0574250:CDS 40.0%
AACGACCCAATCAACAAAAG+AGG - chr4_1:77595568-77595587 None:intergenic 40.0%
!! CTTTTGTTGATTGGGTCGTT+TGG + chr4_1:77595568-77595587 Msa0574250:CDS 40.0%
! CAAAAATTCTAGAGGGTTCG+GGG + chr4_1:77595626-77595645 Msa0574250:CDS 40.0%
! TCGTTCTTTTCTATTGGGCT+TGG + chr4_1:77595700-77595719 Msa0574250:CDS 40.0%
! CGTTCTTTTCTATTGGGCTT+GGG + chr4_1:77595701-77595720 Msa0574250:CDS 40.0%
TGCAATTTCAGTGAATCGGT+TGG + chr4_1:77595789-77595808 Msa0574250:CDS 40.0%
!! CTTTGTGTTGGCAGGAATTT+TGG + chr4_1:77595876-77595895 Msa0574250:CDS 40.0%
AAACAGGGTAGTCACGATAA+GGG + chr4_1:77596015-77596034 Msa0574250:CDS 40.0%
!! TGTGGAAAAAGGAGGTGTTT+AGG + chr4_1:77596038-77596057 Msa0574250:intron 40.0%
!! GTGGAAAAAGGAGGTGTTTA+GGG + chr4_1:77596039-77596058 Msa0574250:intron 40.0%
!! TGGAAAAAGGAGGTGTTTAG+GGG + chr4_1:77596040-77596059 Msa0574250:intron 40.0%
GCTAGACCAAACTGTATTTG+TGG + chr4_1:77596182-77596201 Msa0574250:intron 40.0%
CTACCAATGTTATGAGAAGG+TGG + chr4_1:77596235-77596254 Msa0574250:intron 40.0%
CAGAGCATGCATGGTTTCTT+TGG + chr4_1:77594066-77594085 Msa0574250:five_prime_UTR 45.0%
TCTCCTCAGTGACGCAAAAA+TGG + chr4_1:77594421-77594440 Msa0574250:exon 45.0%
!! AGTCCATTTTTGCGTCACTG+AGG - chr4_1:77594427-77594446 None:intergenic 45.0%
! GACGCAAAAATGGACTCCAA+CGG + chr4_1:77594431-77594450 Msa0574250:exon 45.0%
! GGCATTTTCTTCTTTGCCGT+TGG - chr4_1:77594450-77594469 None:intergenic 45.0%
! TTGACGAGAAAAGAGCACAG+AGG - chr4_1:77594499-77594518 None:intergenic 45.0%
TCAACCAACTCCATTCTCCT+CGG + chr4_1:77594515-77594534 Msa0574250:CDS 45.0%
CGATTAAGGAACACACGTTG+AGG - chr4_1:77594754-77594773 None:intergenic 45.0%
AGAGGCTAGTGATCCGATTA+AGG - chr4_1:77594768-77594787 None:intergenic 45.0%
! TTAATCGGATCACTAGCCTC+TGG + chr4_1:77594767-77594786 Msa0574250:CDS 45.0%
GCAGCAGCCACATTCTTAAT+TGG + chr4_1:77594833-77594852 Msa0574250:CDS 45.0%
ATACTTCAGGAAGCGAAGTG+AGG - chr4_1:77594997-77595016 None:intergenic 45.0%
CAAGCATGATTCTCCAACCA+AGG - chr4_1:77595084-77595103 None:intergenic 45.0%
ACAAGCCAATGAGGAGATTC+AGG - chr4_1:77595157-77595176 None:intergenic 45.0%
CTCCAGAAGAAGCTGAACTA+AGG + chr4_1:77595230-77595249 Msa0574250:CDS 45.0%
AGCCTTAGTTCAGCTTCTTC+TGG - chr4_1:77595235-77595254 None:intergenic 45.0%
ATTCCAATTTCCAGGCCCAT+GGG - chr4_1:77595290-77595309 None:intergenic 45.0%
CCTTGACCATTCCAATTTCC+AGG - chr4_1:77595298-77595317 None:intergenic 45.0%
CCTGGAAATTGGAATGGTCA+AGG + chr4_1:77595295-77595314 Msa0574250:CDS 45.0%
!! ATACGCTTAATGGGCTTGCT+GGG - chr4_1:77595346-77595365 None:intergenic 45.0%
!!! CCGGAAGTTTTTAAAGCTGC+TGG + chr4_1:77595436-77595455 Msa0574250:CDS 45.0%
GTTGATTGGGTCGTTTGGTA+TGG + chr4_1:77595573-77595592 Msa0574250:CDS 45.0%
! GTATGGCTGTGTCGTTGTTT+GGG + chr4_1:77595590-77595609 Msa0574250:CDS 45.0%
! TCGTTGTTTGGGCTTGGTTT+GGG + chr4_1:77595601-77595620 Msa0574250:CDS 45.0%
! CGTCGGAGATTTTTCCTATG+AGG + chr4_1:77595743-77595762 Msa0574250:CDS 45.0%
!! TCAGTGAATCGGTTGGTAAG+TGG + chr4_1:77595796-77595815 Msa0574250:CDS 45.0%
TGGGGGAATGTTCTTTGTGT+TGG + chr4_1:77595864-77595883 Msa0574250:CDS 45.0%
! GGAATGTTCTTTGTGTTGGC+AGG + chr4_1:77595868-77595887 Msa0574250:CDS 45.0%
!! TGTGTTGGCAGGAATTTTGG+TGG + chr4_1:77595879-77595898 Msa0574250:CDS 45.0%
GTTTGTATGCCAGAGACCAA+AGG + chr4_1:77595922-77595941 Msa0574250:CDS 45.0%
AATGTCTTGCCTTTGGTCTC+TGG - chr4_1:77595934-77595953 None:intergenic 45.0%
AATGGAAACTCTCTTCGTCG+AGG + chr4_1:77595960-77595979 Msa0574250:CDS 45.0%
GAAACAGGGTAGTCACGATA+AGG + chr4_1:77596014-77596033 Msa0574250:CDS 45.0%
! CACGATAAGGGTGTGGAAAA+AGG + chr4_1:77596027-77596046 Msa0574250:CDS 45.0%
! GATAAGGGTGTGGAAAAAGG+AGG + chr4_1:77596030-77596049 Msa0574250:CDS 45.0%
CCGAAGCATGAGTCATATGA+GGG - chr4_1:77596312-77596331 None:intergenic 45.0%
CCCTCATATGACTCATGCTT+CGG + chr4_1:77596309-77596328 Msa0574250:CDS 45.0%
ACCGAAGCATGAGTCATATG+AGG - chr4_1:77596313-77596332 None:intergenic 45.0%
CAGAGCATGCATGGTTTCTT+TGG + chr4_1:77594066-77594085 Msa0574250:five_prime_UTR 45.0%
TCTCCTCAGTGACGCAAAAA+TGG + chr4_1:77594421-77594440 Msa0574250:exon 45.0%
!! AGTCCATTTTTGCGTCACTG+AGG - chr4_1:77594427-77594446 None:intergenic 45.0%
! GACGCAAAAATGGACTCCAA+CGG + chr4_1:77594431-77594450 Msa0574250:exon 45.0%
! GGCATTTTCTTCTTTGCCGT+TGG - chr4_1:77594450-77594469 None:intergenic 45.0%
! TTGACGAGAAAAGAGCACAG+AGG - chr4_1:77594499-77594518 None:intergenic 45.0%
TCAACCAACTCCATTCTCCT+CGG + chr4_1:77594515-77594534 Msa0574250:CDS 45.0%
CGATTAAGGAACACACGTTG+AGG - chr4_1:77594754-77594773 None:intergenic 45.0%
AGAGGCTAGTGATCCGATTA+AGG - chr4_1:77594768-77594787 None:intergenic 45.0%
! TTAATCGGATCACTAGCCTC+TGG + chr4_1:77594767-77594786 Msa0574250:CDS 45.0%
GCAGCAGCCACATTCTTAAT+TGG + chr4_1:77594833-77594852 Msa0574250:CDS 45.0%
ATACTTCAGGAAGCGAAGTG+AGG - chr4_1:77594997-77595016 None:intergenic 45.0%
CAAGCATGATTCTCCAACCA+AGG - chr4_1:77595084-77595103 None:intergenic 45.0%
ACAAGCCAATGAGGAGATTC+AGG - chr4_1:77595157-77595176 None:intergenic 45.0%
CTCCAGAAGAAGCTGAACTA+AGG + chr4_1:77595230-77595249 Msa0574250:CDS 45.0%
AGCCTTAGTTCAGCTTCTTC+TGG - chr4_1:77595235-77595254 None:intergenic 45.0%
ATTCCAATTTCCAGGCCCAT+GGG - chr4_1:77595290-77595309 None:intergenic 45.0%
CCTTGACCATTCCAATTTCC+AGG - chr4_1:77595298-77595317 None:intergenic 45.0%
CCTGGAAATTGGAATGGTCA+AGG + chr4_1:77595295-77595314 Msa0574250:CDS 45.0%
!! ATACGCTTAATGGGCTTGCT+GGG - chr4_1:77595346-77595365 None:intergenic 45.0%
!!! CCGGAAGTTTTTAAAGCTGC+TGG + chr4_1:77595436-77595455 Msa0574250:CDS 45.0%
GTTGATTGGGTCGTTTGGTA+TGG + chr4_1:77595573-77595592 Msa0574250:CDS 45.0%
! GTATGGCTGTGTCGTTGTTT+GGG + chr4_1:77595590-77595609 Msa0574250:CDS 45.0%
! TCGTTGTTTGGGCTTGGTTT+GGG + chr4_1:77595601-77595620 Msa0574250:CDS 45.0%
! CGTCGGAGATTTTTCCTATG+AGG + chr4_1:77595743-77595762 Msa0574250:CDS 45.0%
!! TCAGTGAATCGGTTGGTAAG+TGG + chr4_1:77595796-77595815 Msa0574250:CDS 45.0%
TGGGGGAATGTTCTTTGTGT+TGG + chr4_1:77595864-77595883 Msa0574250:CDS 45.0%
! GGAATGTTCTTTGTGTTGGC+AGG + chr4_1:77595868-77595887 Msa0574250:CDS 45.0%
!! TGTGTTGGCAGGAATTTTGG+TGG + chr4_1:77595879-77595898 Msa0574250:CDS 45.0%
GTTTGTATGCCAGAGACCAA+AGG + chr4_1:77595922-77595941 Msa0574250:CDS 45.0%
AATGTCTTGCCTTTGGTCTC+TGG - chr4_1:77595934-77595953 None:intergenic 45.0%
AATGGAAACTCTCTTCGTCG+AGG + chr4_1:77595960-77595979 Msa0574250:CDS 45.0%
GAAACAGGGTAGTCACGATA+AGG + chr4_1:77596014-77596033 Msa0574250:CDS 45.0%
! CACGATAAGGGTGTGGAAAA+AGG + chr4_1:77596027-77596046 Msa0574250:CDS 45.0%
! GATAAGGGTGTGGAAAAAGG+AGG + chr4_1:77596030-77596049 Msa0574250:CDS 45.0%
CCGAAGCATGAGTCATATGA+GGG - chr4_1:77596312-77596331 None:intergenic 45.0%
CCCTCATATGACTCATGCTT+CGG + chr4_1:77596309-77596328 Msa0574250:CDS 45.0%
ACCGAAGCATGAGTCATATG+AGG - chr4_1:77596313-77596332 None:intergenic 45.0%
AACTCCATTCTCCTCGGCTA+CGG + chr4_1:77594521-77594540 Msa0574250:CDS 50.0%
GGCAAAACCTCCGACACAAT+CGG + chr4_1:77594788-77594807 Msa0574250:CDS 50.0%
GGTAGAATGATTGCCGGCAT+TGG + chr4_1:77594902-77594921 Msa0574250:CDS 50.0%
TGCATAACCAACGCCAATGC+CGG - chr4_1:77594918-77594937 None:intergenic 50.0%
GAGAGTTCTGCCGTATAGAG+AGG - chr4_1:77594953-77594972 None:intergenic 50.0%
CATTCCAATTTCCAGGCCCA+TGG - chr4_1:77595291-77595310 None:intergenic 50.0%
CATGGGCCTGGAAATTGGAA+TGG + chr4_1:77595289-77595308 Msa0574250:CDS 50.0%
!! CATACGCTTAATGGGCTTGC+TGG - chr4_1:77595347-77595366 None:intergenic 50.0%
! AGGCGGCCTCTTTTGTTGAT+TGG + chr4_1:77595559-77595578 Msa0574250:CDS 50.0%
!! GGCGGCCTCTTTTGTTGATT+GGG + chr4_1:77595560-77595579 Msa0574250:CDS 50.0%
! GGTATGGCTGTGTCGTTGTT+TGG + chr4_1:77595589-77595608 Msa0574250:CDS 50.0%
! GTCGTTGTTTGGGCTTGGTT+TGG + chr4_1:77595600-77595619 Msa0574250:CDS 50.0%
TTGGGCTTGGGCCTATTACT+TGG + chr4_1:77595713-77595732 Msa0574250:CDS 50.0%
TGGGCTTGGGCCTATTACTT+GGG + chr4_1:77595714-77595733 Msa0574250:CDS 50.0%
!! CCTTGAGCTCTAAGCCTCAT+AGG - chr4_1:77595760-77595779 None:intergenic 50.0%
CCTATGAGGCTTAGAGCTCA+AGG + chr4_1:77595757-77595776 Msa0574250:CDS 50.0%
!! GAATCGGTTGGTAAGTGGAG+TGG + chr4_1:77595801-77595820 Msa0574250:CDS 50.0%
!! GTTGGCAGGAATTTTGGTGG+TGG + chr4_1:77595882-77595901 Msa0574250:CDS 50.0%
!!! GGAATTTTGGTGGTGGCTAC+CGG + chr4_1:77595889-77595908 Msa0574250:CDS 50.0%
AACTCCATTCTCCTCGGCTA+CGG + chr4_1:77594521-77594540 Msa0574250:CDS 50.0%
GGCAAAACCTCCGACACAAT+CGG + chr4_1:77594788-77594807 Msa0574250:CDS 50.0%
GGTAGAATGATTGCCGGCAT+TGG + chr4_1:77594902-77594921 Msa0574250:CDS 50.0%
TGCATAACCAACGCCAATGC+CGG - chr4_1:77594918-77594937 None:intergenic 50.0%
GAGAGTTCTGCCGTATAGAG+AGG - chr4_1:77594953-77594972 None:intergenic 50.0%
CATTCCAATTTCCAGGCCCA+TGG - chr4_1:77595291-77595310 None:intergenic 50.0%
CATGGGCCTGGAAATTGGAA+TGG + chr4_1:77595289-77595308 Msa0574250:CDS 50.0%
!! CATACGCTTAATGGGCTTGC+TGG - chr4_1:77595347-77595366 None:intergenic 50.0%
! AGGCGGCCTCTTTTGTTGAT+TGG + chr4_1:77595559-77595578 Msa0574250:CDS 50.0%
!! GGCGGCCTCTTTTGTTGATT+GGG + chr4_1:77595560-77595579 Msa0574250:CDS 50.0%
! GGTATGGCTGTGTCGTTGTT+TGG + chr4_1:77595589-77595608 Msa0574250:CDS 50.0%
! GTCGTTGTTTGGGCTTGGTT+TGG + chr4_1:77595600-77595619 Msa0574250:CDS 50.0%
TTGGGCTTGGGCCTATTACT+TGG + chr4_1:77595713-77595732 Msa0574250:CDS 50.0%
TGGGCTTGGGCCTATTACTT+GGG + chr4_1:77595714-77595733 Msa0574250:CDS 50.0%
!! CCTTGAGCTCTAAGCCTCAT+AGG - chr4_1:77595760-77595779 None:intergenic 50.0%
CCTATGAGGCTTAGAGCTCA+AGG + chr4_1:77595757-77595776 Msa0574250:CDS 50.0%
!! GAATCGGTTGGTAAGTGGAG+TGG + chr4_1:77595801-77595820 Msa0574250:CDS 50.0%
!! GTTGGCAGGAATTTTGGTGG+TGG + chr4_1:77595882-77595901 Msa0574250:CDS 50.0%
!!! GGAATTTTGGTGGTGGCTAC+CGG + chr4_1:77595889-77595908 Msa0574250:CDS 50.0%
ATGCTCTGCAACCACGGTCA+AGG - chr4_1:77594054-77594073 None:intergenic 55.0%
CCATGCATGCTCTGCAACCA+CGG - chr4_1:77594060-77594079 None:intergenic 55.0%
GTAGCCGAGGAGAATGGAGT+TGG - chr4_1:77594522-77594541 None:intergenic 55.0%
! TGTGTCGGAGGTTTTGCCAG+AGG - chr4_1:77594786-77594805 None:intergenic 55.0%
GTAGCGTCGTCCGATTGTGT+CGG - chr4_1:77594801-77594820 None:intergenic 55.0%
!! ATGATTGCCGGCATTGGCGT+TGG + chr4_1:77594908-77594927 Msa0574250:CDS 55.0%
AGGAAACCACGTGTGGTGGT+GGG - chr4_1:77594977-77594996 None:intergenic 55.0%
AGTGAGGAAACCACGTGTGG+TGG - chr4_1:77594981-77595000 None:intergenic 55.0%
CGAAGTGAGGAAACCACGTG+TGG - chr4_1:77594984-77595003 None:intergenic 55.0%
AATGATTCGACCCATGGGCC+TGG + chr4_1:77595277-77595296 Msa0574250:CDS 55.0%
! GCTGTGTCGTTGTTTGGGCT+TGG + chr4_1:77595595-77595614 Msa0574250:CDS 55.0%
GAAGCCTGTTTGGGCTGTTG+TGG + chr4_1:77595648-77595667 Msa0574250:CDS 55.0%
CACACCACAACAGCCCAAAC+AGG - chr4_1:77595655-77595674 None:intergenic 55.0%
GGCTGTTGTGGTGTGCATTG+TGG + chr4_1:77595660-77595679 Msa0574250:CDS 55.0%
GGGTAGTCACGATAAGGGTG+TGG + chr4_1:77596020-77596039 Msa0574250:CDS 55.0%
ATGCTCTGCAACCACGGTCA+AGG - chr4_1:77594054-77594073 None:intergenic 55.0%
CCATGCATGCTCTGCAACCA+CGG - chr4_1:77594060-77594079 None:intergenic 55.0%
GTAGCCGAGGAGAATGGAGT+TGG - chr4_1:77594522-77594541 None:intergenic 55.0%
! TGTGTCGGAGGTTTTGCCAG+AGG - chr4_1:77594786-77594805 None:intergenic 55.0%
GTAGCGTCGTCCGATTGTGT+CGG - chr4_1:77594801-77594820 None:intergenic 55.0%
!! ATGATTGCCGGCATTGGCGT+TGG + chr4_1:77594908-77594927 Msa0574250:CDS 55.0%
AGGAAACCACGTGTGGTGGT+GGG - chr4_1:77594977-77594996 None:intergenic 55.0%
AGTGAGGAAACCACGTGTGG+TGG - chr4_1:77594981-77595000 None:intergenic 55.0%
CGAAGTGAGGAAACCACGTG+TGG - chr4_1:77594984-77595003 None:intergenic 55.0%
AATGATTCGACCCATGGGCC+TGG + chr4_1:77595277-77595296 Msa0574250:CDS 55.0%
! GCTGTGTCGTTGTTTGGGCT+TGG + chr4_1:77595595-77595614 Msa0574250:CDS 55.0%
GAAGCCTGTTTGGGCTGTTG+TGG + chr4_1:77595648-77595667 Msa0574250:CDS 55.0%
CACACCACAACAGCCCAAAC+AGG - chr4_1:77595655-77595674 None:intergenic 55.0%
GGCTGTTGTGGTGTGCATTG+TGG + chr4_1:77595660-77595679 Msa0574250:CDS 55.0%
GGGTAGTCACGATAAGGGTG+TGG + chr4_1:77596020-77596039 Msa0574250:CDS 55.0%
CCGTGGTTGCAGAGCATGCA+TGG + chr4_1:77594057-77594076 Msa0574250:five_prime_UTR 60.0%
GTGACCGTAGCCGAGGAGAA+TGG - chr4_1:77594528-77594547 None:intergenic 60.0%
AGTGTGAGTGACCGTAGCCG+AGG - chr4_1:77594535-77594554 None:intergenic 60.0%
!! GAAACCACGTGTGGTGGTGG+GGG - chr4_1:77594975-77594994 None:intergenic 60.0%
! GGAAACCACGTGTGGTGGTG+GGG - chr4_1:77594976-77594995 None:intergenic 60.0%
GAGGAAACCACGTGTGGTGG+TGG - chr4_1:77594978-77594997 None:intergenic 60.0%
CGACCCATGGGCCTGGAAAT+TGG + chr4_1:77595284-77595303 Msa0574250:CDS 60.0%
AGGGTTCGGGGAAGCCTGTT+TGG + chr4_1:77595638-77595657 Msa0574250:CDS 60.0%
GGGTTCGGGGAAGCCTGTTT+GGG + chr4_1:77595639-77595658 Msa0574250:CDS 60.0%
CCGTGGTTGCAGAGCATGCA+TGG + chr4_1:77594057-77594076 Msa0574250:five_prime_UTR 60.0%
GTGACCGTAGCCGAGGAGAA+TGG - chr4_1:77594528-77594547 None:intergenic 60.0%
AGTGTGAGTGACCGTAGCCG+AGG - chr4_1:77594535-77594554 None:intergenic 60.0%
!! GAAACCACGTGTGGTGGTGG+GGG - chr4_1:77594975-77594994 None:intergenic 60.0%
! GGAAACCACGTGTGGTGGTG+GGG - chr4_1:77594976-77594995 None:intergenic 60.0%
GAGGAAACCACGTGTGGTGG+TGG - chr4_1:77594978-77594997 None:intergenic 60.0%
CGACCCATGGGCCTGGAAAT+TGG + chr4_1:77595284-77595303 Msa0574250:CDS 60.0%
AGGGTTCGGGGAAGCCTGTT+TGG + chr4_1:77595638-77595657 Msa0574250:CDS 60.0%
GGGTTCGGGGAAGCCTGTTT+GGG + chr4_1:77595639-77595658 Msa0574250:CDS 60.0%
GCGTCGTCCGATTGTGTCGG+AGG - chr4_1:77594798-77594817 None:intergenic 65.0%
GCGTCGTCCGATTGTGTCGG+AGG - chr4_1:77594798-77594817 None:intergenic 65.0%
CTCTCCCCCACCACCACACG+TGG + chr4_1:77594968-77594987 Msa0574250:CDS 70.0%
CTCTCCCCCACCACCACACG+TGG + chr4_1:77594968-77594987 Msa0574250:CDS 70.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 77594045 77596378 77594045 ID=Msa0574250;Name=Msa0574250
chr4_1 mRNA 77594045 77596378 77594045 ID=Msa0574250-mRNA-1;Parent=Msa0574250;Name=Msa0574250-mRNA-1;_AED=0.04;_eAED=0.04;_QI=119|0.66|0.5|1|0.33|0.25|4|0|524
chr4_1 exon 77594045 77594138 77594045 ID=Msa0574250-mRNA-1:exon:27381;Parent=Msa0574250-mRNA-1
chr4_1 exon 77594415 77594542 77594415 ID=Msa0574250-mRNA-1:exon:27382;Parent=Msa0574250-mRNA-1
chr4_1 exon 77594666 77596051 77594666 ID=Msa0574250-mRNA-1:exon:27383;Parent=Msa0574250-mRNA-1
chr4_1 exon 77596293 77596378 77596293 ID=Msa0574250-mRNA-1:exon:27384;Parent=Msa0574250-mRNA-1
chr4_1 five_prime_UTR 77594045 77594138 77594045 ID=Msa0574250-mRNA-1:five_prime_utr;Parent=Msa0574250-mRNA-1
chr4_1 five_prime_UTR 77594415 77594439 77594415 ID=Msa0574250-mRNA-1:five_prime_utr;Parent=Msa0574250-mRNA-1
chr4_1 CDS 77594440 77594542 77594440 ID=Msa0574250-mRNA-1:cds;Parent=Msa0574250-mRNA-1
chr4_1 CDS 77594666 77596051 77594666 ID=Msa0574250-mRNA-1:cds;Parent=Msa0574250-mRNA-1
chr4_1 CDS 77596293 77596378 77596293 ID=Msa0574250-mRNA-1:cds;Parent=Msa0574250-mRNA-1
Gene Sequence

>Msa0574250

ATGGACTCCAACGGCAAAGAAGAAAATGCCTCAATTCGCATCAACAGATACACACTCCTCTGTGCTCTTTTCTCGTCAACCAACTCCATTCTCCTCGGCTACGATATTGGAGTTATGAGTGGAGCAAGCATGTTGATAAAAGAAAATCTAAAAATCTCACGAATTCAACAAGAAATACTGGTAGGCAGCCTCAACGTGTGTTCCTTAATCGGATCACTAGCCTCTGGCAAAACCTCCGACACAATCGGACGACGCTACACAATCGTCTTAGCAGCAGCCACATTCTTAATTGGAGCTATCTTCATGTCACTTGCACATTCCTTCCTTTTCATCTTAACTGGTAGAATGATTGCCGGCATTGGCGTTGGTTATGCACTCATGATTTCGCCTCTCTATACGGCAGAACTCTCCCCCACCACCACACGTGGTTTCCTCACTTCGCTTCCTGAAGTATTCATCACTCTTGGAATTCTCATTGGTTATGTTATCAACTACGCTTTAACAGATCTTCCTATAAACCTTGGTTGGAGAATCATGCTTGCGATTTCGGCTCTACCTGCGATTTTAATTGCTTTTGGTGTTATTTTTATGCCTGAATCTCCTCATTGGCTTGTTTTCAAAGGAAGAGTTTCTGAAGCCAAACGTGTTCTTCTTTCACTTTCAACTACTCCAGAAGAAGCTGAACTAAGGCTTCAAGAAATAGTAACAAACAAAAATGATTCGACCCATGGGCCTGGAAATTGGAATGGTCAAGGTGTTTGGAAAGAGCTTTTTTTAAGGCCCAGCAAGCCCATTAAGCGTATGTTGATTTCTGCTATTGGGATTAATTTCTTCATGCAAGCATCTGGAAACGATGCCGTTATATATTACTCACCGGAAGTTTTTAAAGCTGCTGGGATTCACGGTAAGAAAAAGCTATTCGGAGTTAATGTGATTATGGGCTTGTCAAAGAGTTTTTTTGTTTTTCTTTCGGCGATTTATTTGGATAAATTTGGGAGGCGGCCTCTTTTGTTGATTGGGTCGTTTGGTATGGCTGTGTCGTTGTTTGGGCTTGGTTTGGGCTCAAAAATTCTAGAGGGTTCGGGGAAGCCTGTTTGGGCTGTTGTGGTGTGCATTGTGGCTGTTTGCGCTGATGTTTCGTTCTTTTCTATTGGGCTTGGGCCTATTACTTGGGTTTATTCGTCGGAGATTTTTCCTATGAGGCTTAGAGCTCAAGGTTCGAGTATTGCAATTTCAGTGAATCGGTTGGTAAGTGGAGTGGTGTCTATGACGTTCTTGAGCATTTCGAAGAAGATAACTTTTGGGGGAATGTTCTTTGTGTTGGCAGGAATTTTGGTGGTGGCTACCGGTTTCTTTTATGTTTGTATGCCAGAGACCAAAGGCAAGACATTAGAAGAAATGGAAACTCTCTTCGTCGAGGATGATGATGATAATAATAACAATAGTAATGAGAAACAGGGTAGTCACGATAAGGGTGTGGAAAAAGGAGGTCTCATTGCAGTTCGCCCTCATATGACTCATGCTTCGGTGCTTGTAGATCTACATCGTTTTTTTTTTCCGGTGCTTGTAATCTAA
Protein sequence

>Msa0574250

MDSNGKEENASIRINRYTLLCALFSSTNSILLGYDIGVMSGASMLIKENLKISRIQQEILVGSLNVCSLIGSLASGKTSDTIGRRYTIVLAAATFLIGAIFMSLAHSFLFILTGRMIAGIGVGYALMISPLYTAELSPTTTRGFLTSLPEVFITLGILIGYVINYALTDLPINLGWRIMLAISALPAILIAFGVIFMPESPHWLVFKGRVSEAKRVLLSLSTTPEEAELRLQEIVTNKNDSTHGPGNWNGQGVWKELFLRPSKPIKRMLISAIGINFFMQASGNDAVIYYSPEVFKAAGIHGKKKLFGVNVIMGLSKSFFVFLSAIYLDKFGRRPLLLIGSFGMAVSLFGLGLGSKILEGSGKPVWAVVVCIVAVCADVSFFSIGLGPITWVYSSEIFPMRLRAQGSSIAISVNRLVSGVVSMTFLSISKKITFGGMFFVLAGILVVATGFFYVCMPETKGKTLEEMETLFVEDDDDNNNNSNEKQGSHDKGVEKGGLIAVRPHMTHASVLVDLHRFFFPVLVI*