Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0577650 | XP_013446588.1 | 100.000 | 70 | 0 | 0 | 8 | 77 | 1 | 70 | 4.88e-39 | 134 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0577650 | A0A072U446 | 100.000 | 70 | 0 | 0 | 8 | 77 | 1 | 70 | 2.33e-39 | 134 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0104570 | Msa0577650 | 0.803571 | 3.271963e-49 | -8.615850e-47 |
| Msa0577650 | Msa0577740 | 0.998271 | 1.929403e-260 | -8.615850e-47 |
| Msa0577650 | Msa0616230 | 0.816041 | 6.783141e-52 | -8.615850e-47 |
| Msa0577650 | Msa0699560 | 0.805782 | 1.130376e-49 | -8.615850e-47 |
| Msa0577650 | Msa0706690 | 0.806644 | 7.444186e-50 | -8.615850e-47 |
| Msa0577650 | Msa0741970 | 0.830250 | 3.263984e-55 | -8.615850e-47 |
| Msa0577650 | Msa0786230 | 0.836860 | 7.307138e-57 | -8.615850e-47 |
| Msa0577650 | Msa0823170 | 0.838164 | 3.382648e-57 | -8.615850e-47 |
| Msa0577650 | Msa1343460 | 0.804073 | 2.573836e-49 | -8.615850e-47 |
| Msa0577650 | Msa1443210 | 0.994968 | 8.227753e-212 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0577650 | MtrunA17_Chr8g0377521 | 100.000 | 70 | 0 | 0 | 8 | 77 | 1 | 70 | 4.49e-43 | 134 |
| Msa0577650 | MtrunA17_Chr3g0122331 | 76.471 | 68 | 16 | 0 | 10 | 77 | 2 | 69 | 1.69e-33 | 109 |
| Msa0577650 | MtrunA17_Chr8g0386301 | 72.059 | 68 | 19 | 0 | 10 | 77 | 2 | 69 | 6.61e-33 | 108 |
| Msa0577650 | MtrunA17_Chr7g0225171 | 67.647 | 68 | 22 | 0 | 10 | 77 | 2 | 69 | 9.75e-31 | 102 |
| Msa0577650 | MtrunA17_Chr7g0225011 | 66.176 | 68 | 23 | 0 | 10 | 77 | 2 | 69 | 1.14e-28 | 97.4 |
| Msa0577650 | MtrunA17_Chr8g0347211 | 64.706 | 68 | 24 | 0 | 10 | 77 | 2 | 69 | 6.46e-28 | 95.5 |
| Msa0577650 | MtrunA17_Chr7g0224981 | 66.176 | 68 | 23 | 0 | 10 | 77 | 2 | 69 | 7.86e-28 | 95.5 |
| Msa0577650 | MtrunA17_Chr7g0224941 | 66.176 | 68 | 23 | 0 | 10 | 77 | 2 | 69 | 7.86e-28 | 95.5 |
| Msa0577650 | MtrunA17_Chr8g0377511 | 61.765 | 68 | 26 | 0 | 10 | 77 | 2 | 69 | 1.89e-27 | 94.4 |
| Msa0577650 | MtrunA17_Chr7g0225061 | 61.765 | 68 | 26 | 0 | 8 | 75 | 1 | 68 | 5.33e-27 | 93.2 |
| Msa0577650 | MtrunA17_Chr7g0225041 | 60.294 | 68 | 27 | 0 | 8 | 75 | 1 | 68 | 5.69e-27 | 93.2 |
| Msa0577650 | MtrunA17_Chr7g0225141 | 57.353 | 68 | 29 | 0 | 10 | 77 | 2 | 69 | 1.21e-24 | 87.4 |
| Msa0577650 | MtrunA17_Chr3g0122341 | 55.224 | 67 | 30 | 0 | 11 | 77 | 3 | 69 | 1.98e-23 | 84.3 |
| Msa0577650 | MtrunA17_Chr7g0225151 | 41.538 | 65 | 38 | 0 | 11 | 75 | 3 | 67 | 1.45e-12 | 56.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0577650 | AT3G48660.1 | 77.941 | 68 | 15 | 0 | 10 | 77 | 2 | 69 | 5.63e-34 | 112 |
| Msa0577650 | AT5G63500.1 | 76.471 | 68 | 16 | 0 | 10 | 77 | 2 | 69 | 8.64e-33 | 108 |
| Msa0577650 | AT3G27027.1 | 61.765 | 68 | 26 | 0 | 8 | 75 | 1 | 68 | 1.99e-26 | 92.0 |
| Msa0577650 | AT5G08391.1 | 55.882 | 68 | 30 | 0 | 10 | 77 | 2 | 69 | 1.48e-25 | 90.1 |
| Msa0577650 | AT3G27030.1 | 58.667 | 75 | 31 | 0 | 3 | 77 | 68 | 142 | 4.78e-25 | 90.9 |
| Msa0577650 | AT3G27030.1 | 63.636 | 66 | 24 | 0 | 11 | 76 | 3 | 68 | 2.08e-24 | 89.4 |
| Msa0577650 | AT5G40980.1 | 68.421 | 57 | 18 | 0 | 8 | 64 | 1 | 57 | 6.36e-24 | 85.9 |
| Msa0577650 | AT3G01950.1 | 54.286 | 70 | 32 | 0 | 8 | 77 | 1 | 70 | 6.75e-24 | 85.9 |
| Msa0577650 | AT5G14110.1 | 52.941 | 68 | 32 | 0 | 8 | 75 | 1 | 68 | 1.68e-22 | 82.4 |
| Msa0577650 | AT3G01940.1 | 65.152 | 66 | 23 | 0 | 10 | 75 | 4 | 69 | 2.62e-20 | 76.6 |
| Msa0577650 | AT5G50660.1 | 59.016 | 61 | 25 | 0 | 10 | 70 | 2 | 62 | 4.52e-15 | 63.5 |
| Msa0577650 | AT5G50560.1 | 59.016 | 61 | 25 | 0 | 10 | 70 | 2 | 62 | 4.52e-15 | 63.5 |
| Msa0577650 | AT5G40960.1 | 40.909 | 66 | 39 | 0 | 11 | 76 | 3 | 68 | 5.30e-11 | 53.1 |
Find 32 sgRNAs with CRISPR-Local
Find 236 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGGGGAGGGTGGTAGCTTT+TGG | 0.170404 | 4_1:-81982459 | Msa0577650:CDS |
| GTTAGAAAAGAATAGCAATT+TGG | 0.188910 | 4_1:-81982574 | Msa0577650:intron |
| AACAAGTGGTCTCTCTATTT+TGG | 0.192974 | 4_1:-81982427 | Msa0577650:CDS |
| CAAAGTGATGGCTGCTGATT+GGG | 0.288404 | 4_1:-81982550 | Msa0577650:CDS |
| TTAGAAAAGAATAGCAATTT+GGG | 0.330584 | 4_1:-81982573 | Msa0577650:intron |
| TTGATTATCCAGAGTAGATA+TGG | 0.359173 | 4_1:+81982349 | None:intergenic |
| GTCCATACCATCATCTTCTT+CGG | 0.384903 | 4_1:-81982405 | Msa0577650:CDS |
| ACTGTTCCAGCTCCCGGCTA+AGG | 0.387885 | 4_1:-81982478 | Msa0577650:CDS |
| TGCTGATTGGGCTCCGGTGG+TGG | 0.391799 | 4_1:-81982538 | Msa0577650:CDS |
| GCAAAGTGATGGCTGCTGAT+TGG | 0.392576 | 4_1:-81982551 | Msa0577650:CDS |
| CCCTCCCCTTAGCCGGGAGC+TGG | 0.420899 | 4_1:+81982472 | None:intergenic |
| CTGTTCCAGCTCCCGGCTAA+GGG | 0.432627 | 4_1:-81982477 | Msa0577650:CDS |
| CTGTTTGTGCTACTAAGTCC+AGG | 0.452174 | 4_1:-81982504 | Msa0577650:CDS |
| CCAGCTCCCGGCTAAGGGGA+GGG | 0.482266 | 4_1:-81982472 | Msa0577650:CDS |
| GCTACCACCCTCCCCTTAGC+CGG | 0.484903 | 4_1:+81982465 | None:intergenic |
| CTACCACCCTCCCCTTAGCC+GGG | 0.486618 | 4_1:+81982466 | None:intergenic |
| AGGGCTACTGTTCCAGCTCC+CGG | 0.497556 | 4_1:-81982484 | Msa0577650:CDS |
| GGCTGCTGATTGGGCTCCGG+TGG | 0.498987 | 4_1:-81982541 | Msa0577650:CDS |
| TCCAGCTCCCGGCTAAGGGG+AGG | 0.518990 | 4_1:-81982473 | Msa0577650:CDS |
| GTCCGAAGAAGATGATGGTA+TGG | 0.522758 | 4_1:+81982403 | None:intergenic |
| GATGGCTGCTGATTGGGCTC+CGG | 0.524505 | 4_1:-81982544 | Msa0577650:CDS |
| ATTGGTGTCCATATCTACTC+TGG | 0.527323 | 4_1:-81982357 | Msa0577650:CDS |
| GGGAGCTGGAACAGTAGCCC+TGG | 0.543144 | 4_1:+81982486 | None:intergenic |
| GGCTCCGGTGGTGGTATCTG+TGG | 0.570677 | 4_1:-81982529 | Msa0577650:CDS |
| GCTCCCGGCTAAGGGGAGGG+TGG | 0.576467 | 4_1:-81982469 | Msa0577650:CDS |
| TAGCAATTTGGGCAAAGTGA+TGG | 0.580819 | 4_1:-81982562 | Msa0577650:CDS |
| TGTTCCAGCTCCCGGCTAAG+GGG | 0.589394 | 4_1:-81982476 | Msa0577650:CDS |
| AACGAGTCCGAAGAAGATGA+TGG | 0.602203 | 4_1:+81982398 | None:intergenic |
| AGCACCACAGATACCACCAC+CGG | 0.611357 | 4_1:+81982525 | None:intergenic |
| TTTGGGAGCATGCAAACAAG+TGG | 0.621437 | 4_1:-81982441 | Msa0577650:CDS |
| TGTTTGTGCTACTAAGTCCA+GGG | 0.634532 | 4_1:-81982503 | Msa0577650:CDS |
| AGAGTAGATATGGACACCAA+TGG | 0.644712 | 4_1:+81982359 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATTAATATAACTGAAT+GGG | + | chr4_1:81982418-81982437 | None:intergenic | 10.0% |
| !! | AAAATATTAATATAACTGAA+TGG | + | chr4_1:81982419-81982438 | None:intergenic | 10.0% |
| !!! | TTTTTTATTTAAACATGTAA+AGG | - | chr4_1:81982438-81982457 | Msa0577650:CDS | 10.0% |
| !!! | AAAAATGATTAAATATTTTG+AGG | + | chr4_1:81982611-81982630 | None:intergenic | 10.0% |
| !!! | GAAGTATTTTTTTAATAATA+AGG | + | chr4_1:81982648-81982667 | None:intergenic | 10.0% |
| !! | TGTATATTAGTATAAAAATA+CGG | - | chr4_1:81983249-81983268 | Msa0577650:intron | 10.0% |
| !! | AAATATTAATATAACTGAAT+GGG | + | chr4_1:81982418-81982437 | None:intergenic | 10.0% |
| !! | AAAATATTAATATAACTGAA+TGG | + | chr4_1:81982419-81982438 | None:intergenic | 10.0% |
| !!! | TTTTTTATTTAAACATGTAA+AGG | - | chr4_1:81982438-81982457 | Msa0577650:CDS | 10.0% |
| !!! | AAAAATGATTAAATATTTTG+AGG | + | chr4_1:81982611-81982630 | None:intergenic | 10.0% |
| !!! | GAAGTATTTTTTTAATAATA+AGG | + | chr4_1:81982648-81982667 | None:intergenic | 10.0% |
| !! | TGTATATTAGTATAAAAATA+CGG | - | chr4_1:81983249-81983268 | Msa0577650:intron | 10.0% |
| !!! | AAACATTATTTTTGACTAAA+AGG | + | chr4_1:81982565-81982584 | None:intergenic | 15.0% |
| !!! | TTTTAGTCAAAAATAATGTT+TGG | - | chr4_1:81982564-81982583 | Msa0577650:intron | 15.0% |
| !!! | GTATTTTTTTAATAATAAGG+AGG | + | chr4_1:81982645-81982664 | None:intergenic | 15.0% |
| !! | TTATCAATATCATATTTGTT+TGG | - | chr4_1:81982895-81982914 | Msa0577650:intron | 15.0% |
| !! | ACAAAACGTAAAAAAAAAAT+TGG | - | chr4_1:81982930-81982949 | Msa0577650:intron | 15.0% |
| !!! | AAAAGGTTAAACTTTATTTA+CGG | - | chr4_1:81982972-81982991 | Msa0577650:intron | 15.0% |
| !! | AATAATATCATATAAGATGT+TGG | + | chr4_1:81983223-81983242 | None:intergenic | 15.0% |
| !!! | AAACATTATTTTTGACTAAA+AGG | + | chr4_1:81982565-81982584 | None:intergenic | 15.0% |
| !!! | TTTTAGTCAAAAATAATGTT+TGG | - | chr4_1:81982564-81982583 | Msa0577650:intron | 15.0% |
| !!! | GTATTTTTTTAATAATAAGG+AGG | + | chr4_1:81982645-81982664 | None:intergenic | 15.0% |
| !! | TTATCAATATCATATTTGTT+TGG | - | chr4_1:81982895-81982914 | Msa0577650:intron | 15.0% |
| !! | ACAAAACGTAAAAAAAAAAT+TGG | - | chr4_1:81982930-81982949 | Msa0577650:intron | 15.0% |
| !!! | AAAAGGTTAAACTTTATTTA+CGG | - | chr4_1:81982972-81982991 | Msa0577650:intron | 15.0% |
| !! | AATAATATCATATAAGATGT+TGG | + | chr4_1:81983223-81983242 | None:intergenic | 15.0% |
| !!! | AGATAACATGATTTTGAAAA+AGG | - | chr4_1:81982375-81982394 | Msa0577650:CDS | 20.0% |
| !!! | GATAACATGATTTTGAAAAA+GGG | - | chr4_1:81982376-81982395 | Msa0577650:CDS | 20.0% |
| !! | ATCTACGAAAAATTCTAATA+CGG | + | chr4_1:81982713-81982732 | None:intergenic | 20.0% |
| !!! | GATATTGATAAACTTTTACA+AGG | + | chr4_1:81982886-81982905 | None:intergenic | 20.0% |
| !! | TAAAGATAAAAAATGTGCAT+TGG | + | chr4_1:81983131-81983150 | None:intergenic | 20.0% |
| !! | AAAATTGTATATTGTCAAAC+AGG | - | chr4_1:81983289-81983308 | Msa0577650:intron | 20.0% |
| !! | TTATATATGGATTTGTCTAT+TGG | - | chr4_1:81983398-81983417 | Msa0577650:intron | 20.0% |
| !! | TATATATGGATTTGTCTATT+GGG | - | chr4_1:81983399-81983418 | Msa0577650:intron | 20.0% |
| !! | ATATCATTTCTATTCTACTT+GGG | + | chr4_1:81983570-81983589 | None:intergenic | 20.0% |
| !! | AATATCATTTCTATTCTACT+TGG | + | chr4_1:81983571-81983590 | None:intergenic | 20.0% |
| !! | TTAGAAAAGAATAGCAATTT+GGG | - | chr4_1:81983949-81983968 | Msa0577650:intron | 20.0% |
| !!! | AGATAACATGATTTTGAAAA+AGG | - | chr4_1:81982375-81982394 | Msa0577650:CDS | 20.0% |
| !!! | GATAACATGATTTTGAAAAA+GGG | - | chr4_1:81982376-81982395 | Msa0577650:CDS | 20.0% |
| !! | ATCTACGAAAAATTCTAATA+CGG | + | chr4_1:81982713-81982732 | None:intergenic | 20.0% |
| !!! | GATATTGATAAACTTTTACA+AGG | + | chr4_1:81982886-81982905 | None:intergenic | 20.0% |
| !! | TAAAGATAAAAAATGTGCAT+TGG | + | chr4_1:81983131-81983150 | None:intergenic | 20.0% |
| !! | AAAATTGTATATTGTCAAAC+AGG | - | chr4_1:81983289-81983308 | Msa0577650:intron | 20.0% |
| !! | TTATATATGGATTTGTCTAT+TGG | - | chr4_1:81983398-81983417 | Msa0577650:intron | 20.0% |
| !! | TATATATGGATTTGTCTATT+GGG | - | chr4_1:81983399-81983418 | Msa0577650:intron | 20.0% |
| !! | ATATCATTTCTATTCTACTT+GGG | + | chr4_1:81983570-81983589 | None:intergenic | 20.0% |
| !! | AATATCATTTCTATTCTACT+TGG | + | chr4_1:81983571-81983590 | None:intergenic | 20.0% |
| !! | TTAGAAAAGAATAGCAATTT+GGG | - | chr4_1:81983949-81983968 | Msa0577650:intron | 20.0% |
| !!! | TTTTTTCCTTCTCTTTTCTA+AGG | - | chr4_1:81982857-81982876 | Msa0577650:intron | 25.0% |
| !! | ACTTTATTTACGGAATTTAC+AGG | - | chr4_1:81982982-81983001 | Msa0577650:intron | 25.0% |
| ! | GTGAGATGACAAATTATATA+TGG | - | chr4_1:81983385-81983404 | Msa0577650:intron | 25.0% |
| ! | AATCGTACAAATATCATTTC+TGG | - | chr4_1:81983699-81983718 | Msa0577650:intron | 25.0% |
| !!! | TACAAATATCATTTCTGGTT+TGG | - | chr4_1:81983704-81983723 | Msa0577650:intron | 25.0% |
| !! | TTTATTTGTTTCTTCGAAGA+TGG | - | chr4_1:81983780-81983799 | Msa0577650:intron | 25.0% |
| !! | TTATTTGTTTCTTCGAAGAT+GGG | - | chr4_1:81983781-81983800 | Msa0577650:intron | 25.0% |
| ! | GTTAGAAAAGAATAGCAATT+TGG | - | chr4_1:81983948-81983967 | Msa0577650:intron | 25.0% |
| !!! | TTTTTTCCTTCTCTTTTCTA+AGG | - | chr4_1:81982857-81982876 | Msa0577650:intron | 25.0% |
| !! | ACTTTATTTACGGAATTTAC+AGG | - | chr4_1:81982982-81983001 | Msa0577650:intron | 25.0% |
| ! | GTGAGATGACAAATTATATA+TGG | - | chr4_1:81983385-81983404 | Msa0577650:intron | 25.0% |
| ! | AATCGTACAAATATCATTTC+TGG | - | chr4_1:81983699-81983718 | Msa0577650:intron | 25.0% |
| !!! | TACAAATATCATTTCTGGTT+TGG | - | chr4_1:81983704-81983723 | Msa0577650:intron | 25.0% |
| !! | TTTATTTGTTTCTTCGAAGA+TGG | - | chr4_1:81983780-81983799 | Msa0577650:intron | 25.0% |
| !! | TTATTTGTTTCTTCGAAGAT+GGG | - | chr4_1:81983781-81983800 | Msa0577650:intron | 25.0% |
| ! | GTTAGAAAAGAATAGCAATT+TGG | - | chr4_1:81983948-81983967 | Msa0577650:intron | 25.0% |
| !! | AACATGATTTTGAAAAAGGG+AGG | - | chr4_1:81982379-81982398 | Msa0577650:CDS | 30.0% |
| TTGTTGTGTTCATTTACCAT+GGG | + | chr4_1:81982538-81982557 | None:intergenic | 30.0% | |
| ATTGTTGTGTTCATTTACCA+TGG | + | chr4_1:81982539-81982558 | None:intergenic | 30.0% | |
| AAAAATTCTAATACGGTCAC+CGG | + | chr4_1:81982706-81982725 | None:intergenic | 30.0% | |
| !!! | ATTGATGTTGTAGCCTTTTT+TGG | - | chr4_1:81982790-81982809 | Msa0577650:intron | 30.0% |
| AAATTGGTTGTCTAAAAGTG+TGG | - | chr4_1:81982946-81982965 | Msa0577650:intron | 30.0% | |
| ! | AATTGGTTGTCTAAAAGTGT+GGG | - | chr4_1:81982947-81982966 | Msa0577650:intron | 30.0% |
| GAGCAGAATTAAAATTTGAG+AGG | - | chr4_1:81983004-81983023 | Msa0577650:intron | 30.0% | |
| !!! | GGAGTACTACTTTTTTACTT+GGG | + | chr4_1:81983065-81983084 | None:intergenic | 30.0% |
| TCAACTAGGTCATCTAATAA+GGG | + | chr4_1:81983094-81983113 | None:intergenic | 30.0% | |
| TCATCTCACTTTACTCTTAT+TGG | + | chr4_1:81983374-81983393 | None:intergenic | 30.0% | |
| ! | AAAAAGTAGTTTGTAACGTG+AGG | + | chr4_1:81983763-81983782 | None:intergenic | 30.0% |
| CTTGTTAAATAGGAACGAAA+AGG | + | chr4_1:81983870-81983889 | None:intergenic | 30.0% | |
| !! | CCATTGTAAGCTTGTTAAAT+AGG | + | chr4_1:81983880-81983899 | None:intergenic | 30.0% |
| CCTATTTAACAAGCTTACAA+TGG | - | chr4_1:81983877-81983896 | Msa0577650:intron | 30.0% | |
| !! | AACATGATTTTGAAAAAGGG+AGG | - | chr4_1:81982379-81982398 | Msa0577650:CDS | 30.0% |
| TTGTTGTGTTCATTTACCAT+GGG | + | chr4_1:81982538-81982557 | None:intergenic | 30.0% | |
| ATTGTTGTGTTCATTTACCA+TGG | + | chr4_1:81982539-81982558 | None:intergenic | 30.0% | |
| AAAAATTCTAATACGGTCAC+CGG | + | chr4_1:81982706-81982725 | None:intergenic | 30.0% | |
| !!! | ATTGATGTTGTAGCCTTTTT+TGG | - | chr4_1:81982790-81982809 | Msa0577650:intron | 30.0% |
| AAATTGGTTGTCTAAAAGTG+TGG | - | chr4_1:81982946-81982965 | Msa0577650:intron | 30.0% | |
| ! | AATTGGTTGTCTAAAAGTGT+GGG | - | chr4_1:81982947-81982966 | Msa0577650:intron | 30.0% |
| GAGCAGAATTAAAATTTGAG+AGG | - | chr4_1:81983004-81983023 | Msa0577650:intron | 30.0% | |
| !!! | GGAGTACTACTTTTTTACTT+GGG | + | chr4_1:81983065-81983084 | None:intergenic | 30.0% |
| TCAACTAGGTCATCTAATAA+GGG | + | chr4_1:81983094-81983113 | None:intergenic | 30.0% | |
| TCATCTCACTTTACTCTTAT+TGG | + | chr4_1:81983374-81983393 | None:intergenic | 30.0% | |
| ! | AAAAAGTAGTTTGTAACGTG+AGG | + | chr4_1:81983763-81983782 | None:intergenic | 30.0% |
| CTTGTTAAATAGGAACGAAA+AGG | + | chr4_1:81983870-81983889 | None:intergenic | 30.0% | |
| !! | CCATTGTAAGCTTGTTAAAT+AGG | + | chr4_1:81983880-81983899 | None:intergenic | 30.0% |
| CCTATTTAACAAGCTTACAA+TGG | - | chr4_1:81983877-81983896 | Msa0577650:intron | 30.0% | |
| ! | GTGACCAAACACTATTTCTT+TGG | - | chr4_1:81982679-81982698 | Msa0577650:intron | 35.0% |
| ! | CAAACACTATTTCTTTGGTC+CGG | - | chr4_1:81982684-81982703 | Msa0577650:intron | 35.0% |
| AGGCTAACAACAACCAAAAA+AGG | + | chr4_1:81982806-81982825 | None:intergenic | 35.0% | |
| ! | ATTGGTTGTCTAAAAGTGTG+GGG | - | chr4_1:81982948-81982967 | Msa0577650:intron | 35.0% |
| !!! | GGGAGTACTACTTTTTTACT+TGG | + | chr4_1:81983066-81983085 | None:intergenic | 35.0% |
| GTCAACTAGGTCATCTAATA+AGG | + | chr4_1:81983095-81983114 | None:intergenic | 35.0% | |
| AAATACGGTCAAAGTATGTC+AGG | - | chr4_1:81983264-81983283 | Msa0577650:intron | 35.0% | |
| TTATTGGAGTTGTTCTTGGA+TGG | + | chr4_1:81983358-81983377 | None:intergenic | 35.0% | |
| ACTCTTATTGGAGTTGTTCT+TGG | + | chr4_1:81983362-81983381 | None:intergenic | 35.0% | |
| ATGTGTAACATCAATGTGCA+AGG | - | chr4_1:81983735-81983754 | Msa0577650:intron | 35.0% | |
| ! | AACAAGTGGTCTCTCTATTT+TGG | - | chr4_1:81984095-81984114 | Msa0577650:intron | 35.0% |
| !! | ACCATTTTTCTACTTGCCAT+TGG | - | chr4_1:81984147-81984166 | Msa0577650:intron | 35.0% |
| ACCAATGGCAAGTAGAAAAA+TGG | + | chr4_1:81984151-81984170 | None:intergenic | 35.0% | |
| ! | GTGACCAAACACTATTTCTT+TGG | - | chr4_1:81982679-81982698 | Msa0577650:intron | 35.0% |
| ! | CAAACACTATTTCTTTGGTC+CGG | - | chr4_1:81982684-81982703 | Msa0577650:intron | 35.0% |
| AGGCTAACAACAACCAAAAA+AGG | + | chr4_1:81982806-81982825 | None:intergenic | 35.0% | |
| ! | ATTGGTTGTCTAAAAGTGTG+GGG | - | chr4_1:81982948-81982967 | Msa0577650:intron | 35.0% |
| !!! | GGGAGTACTACTTTTTTACT+TGG | + | chr4_1:81983066-81983085 | None:intergenic | 35.0% |
| GTCAACTAGGTCATCTAATA+AGG | + | chr4_1:81983095-81983114 | None:intergenic | 35.0% | |
| AAATACGGTCAAAGTATGTC+AGG | - | chr4_1:81983264-81983283 | Msa0577650:intron | 35.0% | |
| TTATTGGAGTTGTTCTTGGA+TGG | + | chr4_1:81983358-81983377 | None:intergenic | 35.0% | |
| ACTCTTATTGGAGTTGTTCT+TGG | + | chr4_1:81983362-81983381 | None:intergenic | 35.0% | |
| ATGTGTAACATCAATGTGCA+AGG | - | chr4_1:81983735-81983754 | Msa0577650:intron | 35.0% | |
| ! | AACAAGTGGTCTCTCTATTT+TGG | - | chr4_1:81984095-81984114 | Msa0577650:intron | 35.0% |
| !! | ACCATTTTTCTACTTGCCAT+TGG | - | chr4_1:81984147-81984166 | Msa0577650:intron | 35.0% |
| ACCAATGGCAAGTAGAAAAA+TGG | + | chr4_1:81984151-81984170 | None:intergenic | 35.0% | |
| CTTGAACTATGACTTACACG+TGG | + | chr4_1:81982487-81982506 | None:intergenic | 40.0% | |
| GTGTTCATTTACCATGGGAA+AGG | + | chr4_1:81982533-81982552 | None:intergenic | 40.0% | |
| CGGACCAAAGAAATAGTGTT+TGG | + | chr4_1:81982686-81982705 | None:intergenic | 40.0% | |
| ! | GCTTCAAGTCTGATTTGTCT+TGG | - | chr4_1:81982755-81982774 | Msa0577650:intron | 40.0% |
| !! | TTGGTTGTTGTTAGCCTTTG+TGG | - | chr4_1:81982809-81982828 | Msa0577650:intron | 40.0% |
| AGGTGTCCTTAGAAAAGAGA+AGG | + | chr4_1:81982866-81982885 | None:intergenic | 40.0% | |
| ! | TTGGTTGTCTAAAAGTGTGG+GGG | - | chr4_1:81982949-81982968 | Msa0577650:intron | 40.0% |
| CTAGGTCATCTAATAAGGGA+CGG | + | chr4_1:81983090-81983109 | None:intergenic | 40.0% | |
| ACAGGCCATCTAATAAGAGA+CGG | - | chr4_1:81983307-81983326 | Msa0577650:intron | 40.0% | |
| TCCTTCCGTCTCTTATTAGA+TGG | + | chr4_1:81983315-81983334 | None:intergenic | 40.0% | |
| ! | CTATTCTACTTGGGTGTTGT+TGG | + | chr4_1:81983561-81983580 | None:intergenic | 40.0% |
| ATGTGTGAGGCAATTGATTG+AGG | + | chr4_1:81983835-81983854 | None:intergenic | 40.0% | |
| GTGATTCTGATCTATGTGTG+AGG | + | chr4_1:81983848-81983867 | None:intergenic | 40.0% | |
| TAGCAATTTGGGCAAAGTGA+TGG | - | chr4_1:81983960-81983979 | Msa0577650:intron | 40.0% | |
| ! | TGTTTGTGCTACTAAGTCCA+GGG | - | chr4_1:81984019-81984038 | Msa0577650:intron | 40.0% |
| GTCCATACCATCATCTTCTT+CGG | - | chr4_1:81984117-81984136 | Msa0577650:intron | 40.0% | |
| AGAGTAGATATGGACACCAA+TGG | + | chr4_1:81984166-81984185 | None:intergenic | 40.0% | |
| ! | ATTGGTGTCCATATCTACTC+TGG | - | chr4_1:81984165-81984184 | Msa0577650:intron | 40.0% |
| CTTGAACTATGACTTACACG+TGG | + | chr4_1:81982487-81982506 | None:intergenic | 40.0% | |
| GTGTTCATTTACCATGGGAA+AGG | + | chr4_1:81982533-81982552 | None:intergenic | 40.0% | |
| CGGACCAAAGAAATAGTGTT+TGG | + | chr4_1:81982686-81982705 | None:intergenic | 40.0% | |
| ! | GCTTCAAGTCTGATTTGTCT+TGG | - | chr4_1:81982755-81982774 | Msa0577650:intron | 40.0% |
| !! | TTGGTTGTTGTTAGCCTTTG+TGG | - | chr4_1:81982809-81982828 | Msa0577650:intron | 40.0% |
| AGGTGTCCTTAGAAAAGAGA+AGG | + | chr4_1:81982866-81982885 | None:intergenic | 40.0% | |
| ! | TTGGTTGTCTAAAAGTGTGG+GGG | - | chr4_1:81982949-81982968 | Msa0577650:intron | 40.0% |
| CTAGGTCATCTAATAAGGGA+CGG | + | chr4_1:81983090-81983109 | None:intergenic | 40.0% | |
| ACAGGCCATCTAATAAGAGA+CGG | - | chr4_1:81983307-81983326 | Msa0577650:intron | 40.0% | |
| TCCTTCCGTCTCTTATTAGA+TGG | + | chr4_1:81983315-81983334 | None:intergenic | 40.0% | |
| ! | CTATTCTACTTGGGTGTTGT+TGG | + | chr4_1:81983561-81983580 | None:intergenic | 40.0% |
| ATGTGTGAGGCAATTGATTG+AGG | + | chr4_1:81983835-81983854 | None:intergenic | 40.0% | |
| GTGATTCTGATCTATGTGTG+AGG | + | chr4_1:81983848-81983867 | None:intergenic | 40.0% | |
| TAGCAATTTGGGCAAAGTGA+TGG | - | chr4_1:81983960-81983979 | Msa0577650:intron | 40.0% | |
| ! | TGTTTGTGCTACTAAGTCCA+GGG | - | chr4_1:81984019-81984038 | Msa0577650:intron | 40.0% |
| GTCCATACCATCATCTTCTT+CGG | - | chr4_1:81984117-81984136 | Msa0577650:intron | 40.0% | |
| AGAGTAGATATGGACACCAA+TGG | + | chr4_1:81984166-81984185 | None:intergenic | 40.0% | |
| ! | ATTGGTGTCCATATCTACTC+TGG | - | chr4_1:81984165-81984184 | Msa0577650:intron | 40.0% |
| AGTCATAGTTCAAGTGCACC+TGG | - | chr4_1:81982493-81982512 | Msa0577650:CDS | 45.0% | |
| ATAGTTCAAGTGCACCTGGT+GGG | - | chr4_1:81982497-81982516 | Msa0577650:CDS | 45.0% | |
| GAAAGGATTCTCCTTTCCCA+TGG | - | chr4_1:81982519-81982538 | Msa0577650:CDS | 45.0% | |
| GACGAACAAGAAAGCCACAA+AGG | + | chr4_1:81982826-81982845 | None:intergenic | 45.0% | |
| ! | GTCTAAAAGTGTGGGGGAAA+AGG | - | chr4_1:81982955-81982974 | Msa0577650:intron | 45.0% |
| GTCATCTAATAAGGGACGGA+GGG | + | chr4_1:81983086-81983105 | None:intergenic | 45.0% | |
| TACGTGTGTCAGAGTCAACT+AGG | + | chr4_1:81983108-81983127 | None:intergenic | 45.0% | |
| GCCATCTAATAAGAGACGGA+AGG | - | chr4_1:81983311-81983330 | Msa0577650:intron | 45.0% | |
| AGGCAATTGATTGAGGCTGA+TGG | + | chr4_1:81983828-81983847 | None:intergenic | 45.0% | |
| ATGGATCACACAGCAGATTG+TGG | - | chr4_1:81983896-81983915 | Msa0577650:intron | 45.0% | |
| ! | CAAAGTGATGGCTGCTGATT+GGG | - | chr4_1:81983972-81983991 | Msa0577650:intron | 45.0% |
| ! | CTGTTTGTGCTACTAAGTCC+AGG | - | chr4_1:81984018-81984037 | Msa0577650:intron | 45.0% |
| ! | TTTGGGAGCATGCAAACAAG+TGG | - | chr4_1:81984081-81984100 | Msa0577650:intron | 45.0% |
| ! | GTCCGAAGAAGATGATGGTA+TGG | + | chr4_1:81984122-81984141 | None:intergenic | 45.0% |
| AACGAGTCCGAAGAAGATGA+TGG | + | chr4_1:81984127-81984146 | None:intergenic | 45.0% | |
| AGTCATAGTTCAAGTGCACC+TGG | - | chr4_1:81982493-81982512 | Msa0577650:CDS | 45.0% | |
| ATAGTTCAAGTGCACCTGGT+GGG | - | chr4_1:81982497-81982516 | Msa0577650:CDS | 45.0% | |
| GAAAGGATTCTCCTTTCCCA+TGG | - | chr4_1:81982519-81982538 | Msa0577650:CDS | 45.0% | |
| GACGAACAAGAAAGCCACAA+AGG | + | chr4_1:81982826-81982845 | None:intergenic | 45.0% | |
| ! | GTCTAAAAGTGTGGGGGAAA+AGG | - | chr4_1:81982955-81982974 | Msa0577650:intron | 45.0% |
| GTCATCTAATAAGGGACGGA+GGG | + | chr4_1:81983086-81983105 | None:intergenic | 45.0% | |
| TACGTGTGTCAGAGTCAACT+AGG | + | chr4_1:81983108-81983127 | None:intergenic | 45.0% | |
| GCCATCTAATAAGAGACGGA+AGG | - | chr4_1:81983311-81983330 | Msa0577650:intron | 45.0% | |
| AGGCAATTGATTGAGGCTGA+TGG | + | chr4_1:81983828-81983847 | None:intergenic | 45.0% | |
| ATGGATCACACAGCAGATTG+TGG | - | chr4_1:81983896-81983915 | Msa0577650:intron | 45.0% | |
| ! | CAAAGTGATGGCTGCTGATT+GGG | - | chr4_1:81983972-81983991 | Msa0577650:intron | 45.0% |
| ! | CTGTTTGTGCTACTAAGTCC+AGG | - | chr4_1:81984018-81984037 | Msa0577650:intron | 45.0% |
| ! | TTTGGGAGCATGCAAACAAG+TGG | - | chr4_1:81984081-81984100 | Msa0577650:intron | 45.0% |
| ! | GTCCGAAGAAGATGATGGTA+TGG | + | chr4_1:81984122-81984141 | None:intergenic | 45.0% |
| AACGAGTCCGAAGAAGATGA+TGG | + | chr4_1:81984127-81984146 | None:intergenic | 45.0% | |
| CATAGTTCAAGTGCACCTGG+TGG | - | chr4_1:81982496-81982515 | Msa0577650:CDS | 50.0% | |
| AAGGAGAATCCTTTCCCACC+AGG | + | chr4_1:81982514-81982533 | None:intergenic | 50.0% | |
| GGTCATCTAATAAGGGACGG+AGG | + | chr4_1:81983087-81983106 | None:intergenic | 50.0% | |
| GATTGAGGCTGATGGAAGCA+AGG | + | chr4_1:81983820-81983839 | None:intergenic | 50.0% | |
| GCAAAGTGATGGCTGCTGAT+TGG | - | chr4_1:81983971-81983990 | Msa0577650:intron | 50.0% | |
| CATAGTTCAAGTGCACCTGG+TGG | - | chr4_1:81982496-81982515 | Msa0577650:CDS | 50.0% | |
| AAGGAGAATCCTTTCCCACC+AGG | + | chr4_1:81982514-81982533 | None:intergenic | 50.0% | |
| GGTCATCTAATAAGGGACGG+AGG | + | chr4_1:81983087-81983106 | None:intergenic | 50.0% | |
| GATTGAGGCTGATGGAAGCA+AGG | + | chr4_1:81983820-81983839 | None:intergenic | 50.0% | |
| GCAAAGTGATGGCTGCTGAT+TGG | - | chr4_1:81983971-81983990 | Msa0577650:intron | 50.0% | |
| CTTACACGTGGCAGTAGAGC+AGG | + | chr4_1:81982475-81982494 | None:intergenic | 55.0% | |
| TCAAGTGCACCTGGTGGGAA+AGG | - | chr4_1:81982502-81982521 | Msa0577650:CDS | 55.0% | |
| AGCACCACAGATACCACCAC+CGG | + | chr4_1:81984000-81984019 | None:intergenic | 55.0% | |
| ! | AAGGGGAGGGTGGTAGCTTT+TGG | - | chr4_1:81984063-81984082 | Msa0577650:intron | 55.0% |
| ! | AGGGGAGGGTGGTAGCTTTT+GGG | - | chr4_1:81984064-81984083 | Msa0577650:intron | 55.0% |
| CTTACACGTGGCAGTAGAGC+AGG | + | chr4_1:81982475-81982494 | None:intergenic | 55.0% | |
| TCAAGTGCACCTGGTGGGAA+AGG | - | chr4_1:81982502-81982521 | Msa0577650:CDS | 55.0% | |
| AGCACCACAGATACCACCAC+CGG | + | chr4_1:81984000-81984019 | None:intergenic | 55.0% | |
| ! | AAGGGGAGGGTGGTAGCTTT+TGG | - | chr4_1:81984063-81984082 | Msa0577650:intron | 55.0% |
| ! | AGGGGAGGGTGGTAGCTTTT+GGG | - | chr4_1:81984064-81984083 | Msa0577650:intron | 55.0% |
| ! | GATGGCTGCTGATTGGGCTC+CGG | - | chr4_1:81983978-81983997 | Msa0577650:intron | 60.0% |
| AGGGCTACTGTTCCAGCTCC+CGG | - | chr4_1:81984038-81984057 | Msa0577650:intron | 60.0% | |
| ACTGTTCCAGCTCCCGGCTA+AGG | - | chr4_1:81984044-81984063 | Msa0577650:intron | 60.0% | |
| CTGTTCCAGCTCCCGGCTAA+GGG | - | chr4_1:81984045-81984064 | Msa0577650:intron | 60.0% | |
| TGTTCCAGCTCCCGGCTAAG+GGG | - | chr4_1:81984046-81984065 | Msa0577650:intron | 60.0% | |
| ! | GATGGCTGCTGATTGGGCTC+CGG | - | chr4_1:81983978-81983997 | Msa0577650:intron | 60.0% |
| AGGGCTACTGTTCCAGCTCC+CGG | - | chr4_1:81984038-81984057 | Msa0577650:intron | 60.0% | |
| ACTGTTCCAGCTCCCGGCTA+AGG | - | chr4_1:81984044-81984063 | Msa0577650:intron | 60.0% | |
| CTGTTCCAGCTCCCGGCTAA+GGG | - | chr4_1:81984045-81984064 | Msa0577650:intron | 60.0% | |
| TGTTCCAGCTCCCGGCTAAG+GGG | - | chr4_1:81984046-81984065 | Msa0577650:intron | 60.0% | |
| ! | TGCTGATTGGGCTCCGGTGG+TGG | - | chr4_1:81983984-81984003 | Msa0577650:intron | 65.0% |
| ! | GGCTCCGGTGGTGGTATCTG+TGG | - | chr4_1:81983993-81984012 | Msa0577650:intron | 65.0% |
| GGGAGCTGGAACAGTAGCCC+TGG | + | chr4_1:81984039-81984058 | None:intergenic | 65.0% | |
| CTACCACCCTCCCCTTAGCC+GGG | + | chr4_1:81984059-81984078 | None:intergenic | 65.0% | |
| GCTACCACCCTCCCCTTAGC+CGG | + | chr4_1:81984060-81984079 | None:intergenic | 65.0% | |
| ! | TGCTGATTGGGCTCCGGTGG+TGG | - | chr4_1:81983984-81984003 | Msa0577650:intron | 65.0% |
| ! | GGCTCCGGTGGTGGTATCTG+TGG | - | chr4_1:81983993-81984012 | Msa0577650:intron | 65.0% |
| GGGAGCTGGAACAGTAGCCC+TGG | + | chr4_1:81984039-81984058 | None:intergenic | 65.0% | |
| CTACCACCCTCCCCTTAGCC+GGG | + | chr4_1:81984059-81984078 | None:intergenic | 65.0% | |
| GCTACCACCCTCCCCTTAGC+CGG | + | chr4_1:81984060-81984079 | None:intergenic | 65.0% | |
| ! | GGCTGCTGATTGGGCTCCGG+TGG | - | chr4_1:81983981-81984000 | Msa0577650:intron | 70.0% |
| TCCAGCTCCCGGCTAAGGGG+AGG | - | chr4_1:81984049-81984068 | Msa0577650:intron | 70.0% | |
| CCAGCTCCCGGCTAAGGGGA+GGG | - | chr4_1:81984050-81984069 | Msa0577650:intron | 70.0% | |
| ! | GGCTGCTGATTGGGCTCCGG+TGG | - | chr4_1:81983981-81984000 | Msa0577650:intron | 70.0% |
| TCCAGCTCCCGGCTAAGGGG+AGG | - | chr4_1:81984049-81984068 | Msa0577650:intron | 70.0% | |
| CCAGCTCCCGGCTAAGGGGA+GGG | - | chr4_1:81984050-81984069 | Msa0577650:intron | 70.0% | |
| CCCTCCCCTTAGCCGGGAGC+TGG | + | chr4_1:81984053-81984072 | None:intergenic | 75.0% | |
| GCTCCCGGCTAAGGGGAGGG+TGG | - | chr4_1:81984053-81984072 | Msa0577650:intron | 75.0% | |
| CCCTCCCCTTAGCCGGGAGC+TGG | + | chr4_1:81984053-81984072 | None:intergenic | 75.0% | |
| GCTCCCGGCTAAGGGGAGGG+TGG | - | chr4_1:81984053-81984072 | Msa0577650:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 81982353 | 81984191 | 81982353 | ID=Msa0577650;Name=Msa0577650 |
| chr4_1 | mRNA | 81982353 | 81984191 | 81982353 | ID=Msa0577650-mRNA-1;Parent=Msa0577650;Name=Msa0577650-mRNA-1;_AED=0.32;_eAED=0.32;_QI=0|0|0|0.5|0|0|2|0|77 |
| chr4_1 | exon | 81984187 | 81984191 | 81984187 | ID=Msa0577650-mRNA-1:exon:29599;Parent=Msa0577650-mRNA-1 |
| chr4_1 | exon | 81982353 | 81982581 | 81982353 | ID=Msa0577650-mRNA-1:exon:29598;Parent=Msa0577650-mRNA-1 |
| chr4_1 | CDS | 81984187 | 81984191 | 81984187 | ID=Msa0577650-mRNA-1:cds;Parent=Msa0577650-mRNA-1 |
| chr4_1 | CDS | 81982353 | 81982581 | 81982353 | ID=Msa0577650-mRNA-1:cds;Parent=Msa0577650-mRNA-1 |
| Gene Sequence |
| Protein sequence |
